Citrus Sinensis ID: 031493

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGTLEEAFFWTLLQFSCTTANGFFPYLNCCIPKL
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHHHHHHHHccccccEEEEccccccEEEEEEccccEEEEEEEccccccccccccccccccccHHHHHHHEEEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHcccEEccccccHHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHHHHHHHHHHHcccEEcccccccccccEEEHHHHHHEEEEEEccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
MFRWFQIELARDMGYTaarfghvmfpenvyePALECAELLLQGvgkgwasrayfsdnGSTAIEIALKMAFRKFSFDHDVLVDFLGKDTTEKCVELKHLKDHIMVILWvpwklkhhhltqgfcsnhgtlEEAFFWTLLQFSCttangffpylnccipkl
Flexible Loop (DISEMBL)
MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGTLEEAFFWTLLQFSCTTANGFFPYLNCCIPKL
Low Complexity Region (SEG)
MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGTLEEAFFWTLLQFSCTTANGFFPYLNCCIPKL
Disordered region (IsUnstruct)
*FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGTLEEAFFWTLLQFSCTTANGFFPYLNCCI***
Disordered Region (DISOPRED)
MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLV*******TEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGTLEEAFFWTLLQFSCTTANGFFPYLNCCIPKL
Disordered Region (DISEMBL)
MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGTLEEAFFWTLLQFSCTTANGFFPYLNCCIPKL
Disordered Region (DISPRO)
MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGTLEEAFFWTLLQFSCTTANGFFPYLNCCIPKL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGTLEEAFFWTLLQFSCTTANGFFPYLNCCIPKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	158	2.2.26 [Sep-21-2011]
Q6ZKV8	821	Bifunctional dethiobiotin	yes	no	0.594	0.114	0.723	2e-34
B0F481	833	Bifunctional dethiobiotin	yes	no	0.468	0.088	0.891	1e-33
P44426	430	Adenosylmethionine-8-amin	yes	no	0.335	0.123	0.407	1e-05
Q64VX4	748	Biotin biosynthesis bifun	yes	no	0.335	0.070	0.407	0.0003
Q5LEY1	748	Biotin biosynthesis bifun	yes	no	0.335	0.070	0.407	0.0003
E1WTS4	748	Biotin biosynthesis bifun	yes	no	0.335	0.070	0.407	0.0003
E6SRG2	744	Biotin biosynthesis bifun	yes	no	0.335	0.071	0.407	0.0005
P22805	455	Adenosylmethionine-8-amin	yes	no	0.392	0.136	0.333	0.0009

>sp|Q6ZKV8|BIODA_ORYSJ Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial OS=Oryza sativa subsp. japonica GN=BIO3-BIO1 PE=2 SV=1

 Score =  144 bits (363), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 68/94 (72%), Positives = 75/94 (79%)

Query: 5   FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 64
            QIELARDMGY AAR+GHVMFPENV+EPAL CAELLL GVGK WASR YFSDNGSTAIEI
Sbjct: 383 LQIELARDMGYAAARYGHVMFPENVHEPALRCAELLLGGVGKDWASRVYFSDNGSTAIEI 442

Query: 65  ALKMAFRKFSFDHDVLVDFLGKDTTEKCVELKHL 98
           ALKMAFRK++ DH ++VD      +E  V  K L
Sbjct: 443 ALKMAFRKYACDHGIIVDSEKDIRSEGSVHFKVL 476

Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 6EC: 2

>sp|B0F481|BIODA_ARATH Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial OS=Arabidopsis thaliana GN=BIO3-BIO1 PE=1 SV=1

 Score =  142 bits (357), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/74 (89%), Positives = 69/74 (93%)

Query: 5   FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 64
           FQ ELAR+MGYTAARFGHVMFPENVYEPAL+CAELLL GVGKGWASR YFSDNGSTAIEI
Sbjct: 400 FQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEI 459

Query: 65  ALKMAFRKFSFDHD 78
           ALKMAFRKF  DH+
Sbjct: 460 ALKMAFRKFCVDHN 473

Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 2

>sp|P44426|BIOA_HAEIN Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=bioA PE=3 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 38/54 (70%), Gaps = 1/54 (1%)

Query: 18  ARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR 71
           A+  H+MF    ++PA+E A+LL+Q +  G   + +F+D+GS A+E+A+KMA +
Sbjct: 75  AKMSHIMFGGFTHDPAVELAQLLVQILPNGL-DKIFFADSGSVAVEVAMKMAIQ 127

Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor.

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 2

>sp|Q64VX4|BIOAB_BACFR Biotin biosynthesis bifunctional protein BioAB OS=Bacteroides fragilis (strain YCH46) GN=bioB PE=3 SV=1

 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 18  ARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR 71
           +R  HVMF    ++PA+E  +LLL  V      + +++D+GS A+E+ALKMA +
Sbjct: 389 SRMSHVMFGGLTHDPAIELGKLLLPLVPPSM-QKIFYADSGSVAVEVALKMAVQ 441

Catalyzes two activities which are involved in the biotine biosynthesis: the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism, and the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA).

Bacteroides fragilis (strain YCH46) (taxid: 295405)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 2

>sp|Q5LEY1|BIOAB_BACFN Biotin biosynthesis bifunctional protein BioAB OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=bioB PE=3 SV=1

 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 18  ARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR 71
           +R  HVMF    ++PA+E  +LLL  V      + +++D+GS A+E+ALKMA +
Sbjct: 389 SRMSHVMFGGLTHDPAIELGKLLLPLVPPSM-QKIFYADSGSVAVEVALKMAVQ 441

Catalyzes two activities which are involved in the biotine biosynthesis: the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism, and the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA).

Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) (taxid: 272559)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 2

>sp|E1WTS4|BIOAB_BACF6 Biotin biosynthesis bifunctional protein BioAB OS=Bacteroides fragilis (strain 638R) GN=bioB PE=3 SV=1

 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 18  ARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR 71
           +R  HVMF    ++PA+E  +LLL  V      + +++D+GS A+E+ALKMA +
Sbjct: 389 SRMSHVMFGGLTHDPAIELGKLLLPLVPPSM-QKIFYADSGSVAVEVALKMAVQ 441

Catalyzes two activities which are involved in the biotine biosynthesis: the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism, and the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA).

Bacteroides fragilis (strain 638R) (taxid: 862962)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 2

>sp|E6SRG2|BIOAB_BACT6 Biotin biosynthesis bifunctional protein BioAB OS=Bacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108) GN=bioB PE=3 SV=1

 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 18  ARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR 71
            +  HVMF    +EPA+E  +LLL  V      + +++D+GS A+E+ALKMA +
Sbjct: 389 GKMSHVMFGGLTHEPAIELGKLLLPLVPPSM-QKIFYADSGSVAVEVALKMAVQ 441

Catalyzes two activities which are involved in the biotine biosynthesis: the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism, and the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA).

Bacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108) (taxid: 693979)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 2

>sp|P22805|BIOA_LYSSH Adenosylmethionine-8-amino-7-oxononanoate aminotransferase OS=Lysinibacillus sphaericus GN=bioA PE=1 SV=1

 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 9   LARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKM 68
           +++ +   A    H +F    +EPA++ A+ L+  +      + +F+DNGS+AIE+ALKM
Sbjct: 69  ISQALSEQAFTLEHTIFANFSHEPAIKLAQKLV-ALTPQSLQKVFFADNGSSAIEVALKM 127

Query: 69  AFR 71
           +F+
Sbjct: 128 SFQ 130

Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor.

Lysinibacillus sphaericus (taxid: 1421)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
255570551	400	adenosylmethionine-8-amino-7-oxononanoat	0.594	0.235	0.744	5e-37
255581340	254	adenosylmethionine-8-amino-7-oxononanoat	0.594	0.370	0.755	9e-37
225446128	863	PREDICTED: uncharacterized protein LOC10	0.582	0.106	0.760	5e-35
357145329	825	PREDICTED: adenosylmethionine-8-amino-7-	0.594	0.113	0.723	6e-34
356550752	819	PREDICTED: l-Lysine-8-amino-7-oxononanoa	0.575	0.111	0.769	6e-33
115475515	821	Os08g0245400 [Oryza sativa Japonica Grou	0.594	0.114	0.723	1e-32
218200750	821	hypothetical protein OsI_28414 [Oryza sa	0.594	0.114	0.723	1e-32
297796671	839	mitochondrial bifunctional diaminopelarg	0.569	0.107	0.776	1e-32
51969346	451	adenosylmethionine-8-amino-7-oxononanoat	0.493	0.172	0.858	2e-32
357479743	890	Adenosylmethionine-8-amino-7-oxononanoat	0.575	0.102	0.758	2e-32

>gi|255570551|ref|XP_002526233.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase, putative [Ricinus communis] gi|223534472|gb|EEF36174.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase, putative [Ricinus communis]

 Score =  159 bits (401), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 70/94 (74%), Positives = 81/94 (86%)

Query: 3   RWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 62
           RW Q ELARDMGY A RFGHVMFPENVYEPALECAELL++GVG+GWASR YFSDNGSTAI
Sbjct: 304 RWLQTELARDMGYAAGRFGHVMFPENVYEPALECAELLVEGVGRGWASRTYFSDNGSTAI 363

Query: 63  EIALKMAFRKFSFDHDVLVDFLGKDTTEKCVELK 96
           EIALKMAFRK+  D+ +L+D    +T E+C++LK
Sbjct: 364 EIALKMAFRKYFVDNRILLDSANNNTAERCIDLK 397

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581340|ref|XP_002531480.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase, putative [Ricinus communis] gi|223528907|gb|EEF30904.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase, putative [Ricinus communis]

 Score =  157 bits (398), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 71/94 (75%), Positives = 80/94 (85%)

Query: 3   RWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAI 62
           RW Q ELARDMGY A RFGHVMFPENVYEPALECAELLL+GVG+GWASR YFSDNGST I
Sbjct: 158 RWLQTELARDMGYAAVRFGHVMFPENVYEPALECAELLLEGVGRGWASRTYFSDNGSTDI 217

Query: 63  EIALKMAFRKFSFDHDVLVDFLGKDTTEKCVELK 96
           EIALKMAFRK+  D+ +L+D    DT E+C++LK
Sbjct: 218 EIALKMAFRKYFVDNRILLDSANNDTAEQCIDLK 251

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446128|ref|XP_002270551.1| PREDICTED: uncharacterized protein LOC100259784 [Vitis vinifera] gi|297735352|emb|CBI17792.3| unnamed protein product [Vitis vinifera]

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 70/92 (76%), Positives = 80/92 (86%)

Query: 5   FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 64
            QIELARD+GY AARFGHVMFPENVYEPALECAELLL+GVGKGWASR +FSDNGSTAIE+
Sbjct: 424 LQIELARDVGYAAARFGHVMFPENVYEPALECAELLLEGVGKGWASRTFFSDNGSTAIEV 483

Query: 65  ALKMAFRKFSFDHDVLVDFLGKDTTEKCVELK 96
           ALKMAFRKFS DH +++D    +T  K +E+K
Sbjct: 484 ALKMAFRKFSLDHGIILDSTDPNTIGKFIEVK 515

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357145329|ref|XP_003573605.1| PREDICTED: adenosylmethionine-8-amino-7-oxononanoate aminotransferase-like [Brachypodium distachyon]

 Score =  148 bits (374), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 68/94 (72%), Positives = 77/94 (81%)

Query: 5   FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 64
            Q+ELARDMGY A R+GHVMFPEN +EPAL CAELLL GVGK WASR Y+SDNGSTAIEI
Sbjct: 384 LQMELARDMGYAAGRYGHVMFPENAHEPALRCAELLLGGVGKDWASRVYYSDNGSTAIEI 443

Query: 65  ALKMAFRKFSFDHDVLVDFLGKDTTEKCVELKHL 98
           ALKMAFRKFSFDH +L+D     T E+ ++LK L
Sbjct: 444 ALKMAFRKFSFDHGILLDSDKSMTNERNIQLKVL 477

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550752|ref|XP_003543748.1| PREDICTED: l-Lysine-8-amino-7-oxononanoate aminotransferase-like [Glycine max]

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 70/91 (76%), Positives = 75/91 (82%)

Query: 5   FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 64
            Q ELAR+MGY AARFGHVMFPENV+EPAL CAELLLQGVGKGWASR YFSDNGSTAIEI
Sbjct: 383 MQTELAREMGYAAARFGHVMFPENVHEPALNCAELLLQGVGKGWASRTYFSDNGSTAIEI 442

Query: 65  ALKMAFRKFSFDHDVLVDFLGKDTTEKCVEL 95
           ALKMAFRKFS DH ++V      T E+  EL
Sbjct: 443 ALKMAFRKFSVDHGLIVHCHEDTTNERSTEL 473

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115475515|ref|NP_001061354.1| Os08g0245400 [Oryza sativa Japonica Group] gi|75294322|sp|Q6ZKV8.1|BIODA_ORYSJ RecName: Full=Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial; AltName: Full=Bifunctional BIO3-BIO1 protein; Includes: RecName: Full=Dethiobiotin synthetase; AltName: Full=DTB synthetase; Short=DTBS; AltName: Full=Protein BIOTIN AUXOTROPH 3; Includes: RecName: Full=7,8-diamino-pelargonic acid aminotransferase; Short=DAPA AT; Short=DAPA aminotransferase; AltName: Full=7,8-diaminononanoate synthase; Short=DANS; AltName: Full=Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; AltName: Full=Diaminopelargonic acid synthase; AltName: Full=Protein BIOTIN AUXOTROPH 1; Flags: Precursor gi|40253229|dbj|BAD05190.1| putative adenosylmethionine-8-amino-7- oxononanoate aminotransferase [Oryza sativa Japonica Group] gi|113623323|dbj|BAF23268.1| Os08g0245400 [Oryza sativa Japonica Group] gi|215704816|dbj|BAG94844.1| unnamed protein product [Oryza sativa Japonica Group] gi|222640185|gb|EEE68317.1| hypothetical protein OsJ_26590 [Oryza sativa Japonica Group]

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/94 (72%), Positives = 75/94 (79%)

Query: 5   FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 64
            QIELARDMGY AAR+GHVMFPENV+EPAL CAELLL GVGK WASR YFSDNGSTAIEI
Sbjct: 383 LQIELARDMGYAAARYGHVMFPENVHEPALRCAELLLGGVGKDWASRVYFSDNGSTAIEI 442

Query: 65  ALKMAFRKFSFDHDVLVDFLGKDTTEKCVELKHL 98
           ALKMAFRK++ DH ++VD      +E  V  K L
Sbjct: 443 ALKMAFRKYACDHGIIVDSEKDIRSEGSVHFKVL 476

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218200750|gb|EEC83177.1| hypothetical protein OsI_28414 [Oryza sativa Indica Group]

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/94 (72%), Positives = 75/94 (79%)

Query: 5   FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 64
            QIELARDMGY AAR+GHVMFPENV+EPAL CAELLL GVGK WASR YFSDNGSTAIEI
Sbjct: 383 LQIELARDMGYAAARYGHVMFPENVHEPALRCAELLLGGVGKDWASRVYFSDNGSTAIEI 442

Query: 65  ALKMAFRKFSFDHDVLVDFLGKDTTEKCVELKHL 98
           ALKMAFRK++ DH ++VD      +E  V  K L
Sbjct: 443 ALKMAFRKYACDHGIIVDSEKDIRSEGSVHFKVL 476

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796671|ref|XP_002866220.1| mitochondrial bifunctional diaminopelargonate synthetase [Arabidopsis lyrata subsp. lyrata] gi|297312055|gb|EFH42479.1| mitochondrial bifunctional diaminopelargonate synthetase [Arabidopsis lyrata subsp. lyrata]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/94 (77%), Positives = 77/94 (81%), Gaps = 4/94 (4%)

Query: 5   FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 64
           FQ ELAR+MGYTAARFGHVMFPENVYEPAL+CAELLL GVGKGWASR YFSDNGSTAIEI
Sbjct: 405 FQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEI 464

Query: 65  ALKMAFRKFSFDHDVLVDFLGKDTTEKCVELKHL 98
           ALKMAFRKF  DH    DF  K   EK + +K L
Sbjct: 465 ALKMAFRKFCVDH----DFCEKREEEKHIVVKVL 494

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51969346|dbj|BAD43365.1| adenosylmethionine-8-amino-7-oxononanoate aminotransferase-like protein [Arabidopsis thaliana] gi|126215756|gb|ABN80998.1| DAPA aminotransferase [Arabidopsis thaliana] gi|156125021|gb|ABU50829.1| dethiobiotin synthetase [Arabidopsis thaliana]

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 67/78 (85%), Positives = 71/78 (91%)

Query: 1  MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGST 60
          + R FQ ELAR+MGYTAARFGHVMFPENVYEPAL+CAELLL GVGKGWASR YFSDNGST
Sbjct: 14 LSRLFQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGST 73

Query: 61 AIEIALKMAFRKFSFDHD 78
          AIEIALKMAFRKF  DH+
Sbjct: 74 AIEIALKMAFRKFCVDHN 91

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479743|ref|XP_003610157.1| Adenosylmethionine-8-amino-7-oxononanoate aminotransferase-like protein [Medicago truncatula] gi|355511212|gb|AES92354.1| Adenosylmethionine-8-amino-7-oxononanoate aminotransferase-like protein [Medicago truncatula]

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/91 (75%), Positives = 76/91 (83%)

Query: 5   FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 64
            Q ELAR+MGYTAARFGHVMFPENV+EPAL+ AELLLQGVGKGWASR YFSDNGSTAIEI
Sbjct: 388 LQAELAREMGYTAARFGHVMFPENVHEPALDSAELLLQGVGKGWASRVYFSDNGSTAIEI 447

Query: 65  ALKMAFRKFSFDHDVLVDFLGKDTTEKCVEL 95
           ALKMAFRKFS +H ++ D     T E+  EL
Sbjct: 448 ALKMAFRKFSVEHGLIPDCHEDATNERSTEL 478

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
TAIR|locus:2174532	833	BIO1 "AT5G57590" [Arabidopsis	0.468	0.088	0.891	6.5e-31
ASPGD|ASPL0000002022	787	biA [Emericella nidulans (taxi	0.398	0.080	0.507	3.2e-11
TIGR_CMR|ECH_0666	426	ECH_0666 "adenosylmethionine-8	0.354	0.131	0.410	0.00022

TAIR|locus:2174532 BIO1 "AT5G57590" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.5e-31, P = 6.5e-31
 Identities = 66/74 (89%), Positives = 69/74 (93%)

Query:     5 FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 64
             FQ ELAR+MGYTAARFGHVMFPENVYEPAL+CAELLL GVGKGWASR YFSDNGSTAIEI
Sbjct:   400 FQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEI 459

Query:    65 ALKMAFRKFSFDHD 78
             ALKMAFRKF  DH+
Sbjct:   460 ALKMAFRKFCVDHN 473

GO:0004015 "adenosylmethionine-8-amino-7-oxononanoate transaminase activity" evidence=IGI;IDA

GO:0004141 "dethiobiotin synthase activity" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009102 "biotin biosynthetic process" evidence=IGI;IDA

GO:0006260 "DNA replication" evidence=RCA

GO:0006270 "DNA replication initiation" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

ASPGD|ASPL0000002022 biA [Emericella nidulans (taxid:162425)]

 Score = 166 (63.5 bits), Expect = 3.2e-11, P = 3.2e-11
 Identities = 32/63 (50%), Positives = 42/63 (66%)

Query:     9 LARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKM 68
             LA    Y A R+GHVMFP N++EPAL  AE LL+ V      + +++DNGST +E+ALKM
Sbjct:   335 LALSAAYAAGRYGHVMFPGNIHEPALALAESLLKTVDNPRLQKVFYTDNGSTGMEVALKM 394

Query:    69 AFR 71
               R
Sbjct:   395 GLR 397

GO:0009102 "biotin biosynthetic process" evidence=IMP

GO:0005575 "cellular_component" evidence=ND

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

TIGR_CMR|ECH_0666 ECH_0666 "adenosylmethionine-8-amino-7-oxononanoate aminotransferase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 105 (42.0 bits), Expect = 0.00022, Sum P(2) = 0.00022
 Identities = 23/56 (41%), Positives = 35/56 (62%)

Query:    18 ARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKF 73
             A+  HVMF    +E +   A  L++   K   SR +FSD+GSTA+E+A+KMA + +
Sbjct:    76 AKLSHVMFSGLAHEQSYVLASRLVKISPKQKMSRVFFSDSGSTAVEVAMKMAVQYY 131

GO:0004015 "adenosylmethionine-8-amino-7-oxononanoate transaminase activity" evidence=ISS

GO:0009102 "biotin biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6ZKV8	BIODA_ORYSJ	2, ., 6, ., 1, ., 6, 2	0.7234	0.5949	0.1144	yes	no
B0F481	BIODA_ARATH	2, ., 6, ., 1, ., 6, 2	0.8918	0.4683	0.0888	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	158
PLN02974	817	PLN02974, PLN02974, adenosylmethionine-8-amino-7-o	7e-49
TIGR00508	417	TIGR00508, bioA, adenosylmethionine-8-amino-7-oxon	1e-11
PRK05964	423	PRK05964, PRK05964, adenosylmethionine--8-amino-7-	2e-11
COG0161	449	COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon	9e-10
pfam00202	338	pfam00202, Aminotran_3, Aminotransferase class-III	2e-08
cd00610	413	cd00610, OAT_like, Acetyl ornithine aminotransfera	5e-08
PRK08742	472	PRK08742, PRK08742, adenosylmethionine--8-amino-7-	3e-07
PRK05630	422	PRK05630, PRK05630, adenosylmethionine--8-amino-7-	3e-07
PRK07030	466	PRK07030, PRK07030, adenosylmethionine--8-amino-7-	3e-07
PRK06916	460	PRK06916, PRK06916, adenosylmethionine--8-amino-7-	7e-07
PRK06173	429	PRK06173, PRK06173, adenosylmethionine--8-amino-7-	9e-07
PRK03244	398	PRK03244, argD, acetylornithine aminotransferase;	3e-06
COG0160	447	COG0160, GabT, 4-aminobutyrate aminotransferase an	4e-06
PRK06943	453	PRK06943, PRK06943, adenosylmethionine--8-amino-7-	2e-05
PRK07483	443	PRK07483, PRK07483, hypothetical protein; Provisio	1e-04
PRK05093	403	PRK05093, argD, bifunctional N-succinyldiaminopime	5e-04
TIGR03246	397	TIGR03246, arg_catab_astC, succinylornithine trans	6e-04
PRK05769	441	PRK05769, PRK05769, 4-aminobutyrate aminotransfera	7e-04
PRK06082	459	PRK06082, PRK06082, 4-aminobutyrate aminotransfera	0.003
PRK12381	406	PRK12381, PRK12381, bifunctional succinylornithine	0.004

>gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate transaminase

 Score =  167 bits (424), Expect = 7e-49
 Identities = 59/92 (64%), Positives = 67/92 (72%)

Query: 5   FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 64
            Q ELAR + Y A R+GHVMFPENV+EPAL  AELLL G GKGWASR +FSDNGSTAIE+
Sbjct: 383 LQPELARAVAYAAGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEV 442

Query: 65  ALKMAFRKFSFDHDVLVDFLGKDTTEKCVELK 96
           ALKMAFRKF  DH  L +   +      +ELK
Sbjct: 443 ALKMAFRKFIVDHGFLENSGNEKRGGDLIELK 474

Length = 817

>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate transaminase

 Score = 61.0 bits (149), Expect = 1e-11
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 17  AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF 70
             +  HVMF    +EPA+E AE L++   +G   + +FSD+GS A+E+ALKMA 
Sbjct: 60  LDKLEHVMFGGLTHEPAIELAERLVEITPEGLE-KVFFSDSGSVAVEVALKMAL 112

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 417

>gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 60.2 bits (147), Expect = 2e-11
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 17  AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF 70
             R  HV+F    +EPA   A+ L+     G     +FSD+GS A+E+ALKMA 
Sbjct: 71  LDRLDHVIFAGFTHEPAERLAQRLVALTPGGL-DHVFFSDSGSVAVEVALKMAL 123

Length = 423

>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

 Score = 55.6 bits (135), Expect = 9e-10
 Identities = 25/63 (39%), Positives = 36/63 (57%)

Query: 8   ELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 67
           E+A  +     +  HVMF    +EPA+E AE L +   +G     +F+D+GS A+E ALK
Sbjct: 64  EIAEAIKKQLDKLPHVMFGGFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALK 123

Query: 68  MAF 70
           MA 
Sbjct: 124 MAL 126

Length = 449

>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 17 AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR 71
          A +  H  F     EPAL+ AE L Q    G   R +F ++GS A E A+K+A +
Sbjct: 45 ADKLTHTSFRAFTTEPALQLAEKLAQLTPGG-LDRVFFMNSGSEANETAIKLARQ 98

Length = 338

>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family

 Score = 50.6 bits (122), Expect = 5e-08
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 17  AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 76
            A+  H        EPA+E AELLL    +G   + +F ++G+ A+E ALK+A R ++  
Sbjct: 65  LAKLTHFSLGFFYNEPAVELAELLLALTPEG-LDKVFFVNSGTEAVEAALKLA-RAYTGR 122

Query: 77  HDVLV 81
             ++ 
Sbjct: 123 KKIIS 127

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413

>gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 48.4 bits (115), Expect = 3e-07
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 17  AARFGHVMFPENVYEPALECAELLL----QGVGKGWASRAYFSDNGSTAIEIALKMAFRK 72
           A     VM     +EPA++ AE LL    +  G+   S+ +++DNGS  +E+ALKMAF  
Sbjct: 93  AGELEQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHY 152

Query: 73  F 73
           F
Sbjct: 153 F 153

Length = 472

>gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 19  RFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR 71
              HVMF    +EPA++    LL     G     ++SD+GS ++E+A+KMA +
Sbjct: 71  TMSHVMFGGLTHEPAIKLTRKLLNLTDNGL-DHVFYSDSGSVSVEVAIKMALQ 122

Length = 422

>gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 22/49 (44%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 22  HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF 70
           HV+     +EP +E +E L++    G  SR +++DNGS+AIE+ALKM+F
Sbjct: 81  HVILAGFSHEPVIELSERLVKITPPG-LSRCFYADNGSSAIEVALKMSF 128

Length = 466

>gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 47.0 bits (112), Expect = 7e-07
 Identities = 18/40 (45%), Positives = 31/40 (77%), Gaps = 1/40 (2%)

Query: 32  PALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR 71
           P++  AE L++ V +G   + ++SD+G+TA+EIA+KMAF+
Sbjct: 100 PSILLAEKLIEVVPEG-LKKVFYSDSGATAVEIAIKMAFQ 138

Length = 460

>gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 47.1 bits (112), Expect = 9e-07
 Identities = 21/52 (40%), Positives = 36/52 (69%), Gaps = 1/52 (1%)

Query: 18  ARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 69
           A+  H+MF    +EPA+E A+ LL+ +     ++ +F+D+GS A+E+A+KMA
Sbjct: 74  AKMSHIMFGGFTHEPAVELAQKLLEILPPS-LNKIFFADSGSVAVEVAMKMA 124

Length = 429

>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 17  AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 69
            A  GHV    N++  EP +  AE L++ +G     R +F ++G+ A E A K+A
Sbjct: 72  LATLGHV---SNLFATEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLA 123

Length = 398

>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

 Score = 45.3 bits (108), Expect = 4e-06
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 17  AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 76
            A+  H    +  YEP +E AE L          + +F ++G+ A+E A+K+A R ++  
Sbjct: 85  LAKLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIA-RAYTGR 143

Query: 77  HDVLVDFLG 85
             V+  F G
Sbjct: 144 PGVIA-FDG 151

Length = 447

>gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 22  HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF 70
           H M     +EPA+E AE L    G G    A+F+ +G++A+EIALKM+F
Sbjct: 88  HAMLAGCTHEPAIELAERLAALTG-GTLGHAFFASDGASAVEIALKMSF 135

Length = 453

>gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 31  EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 69
           EPA   A+ L+     G     YF   GS A+E ALK+A
Sbjct: 73  EPAEALADRLVAAAPAG-LEHVYFVSGGSEAVEAALKLA 110

Length = 443

>gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 6/52 (11%)

Query: 28  NVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDH 77
           NV+  EPAL  A+ L   +   +A R +F+++G+ A E A K+A R+++ D 
Sbjct: 77  NVFTNEPALRLAKKL---IDATFAERVFFANSGAEANEAAFKLA-RRYACDR 124

Length = 403

>gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family

 Score = 38.6 bits (90), Expect = 6e-04
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 9/71 (12%)

Query: 8   ELARDMGYTAARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 65
           EL + +   A +  H+    N Y  EP L  A+ L   V   +A + +F ++G+ A E A
Sbjct: 55  ELVKALIEQADKLWHI---GNGYTNEPVLRLAKKL---VDATFADKVFFCNSGAEANEAA 108

Query: 66  LKMAFRKFSFD 76
           LK+A R+++ D
Sbjct: 109 LKLA-RRYALD 118

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397

>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 17  AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD 76
           A +F H    +  YEPA+E AE L++    G+  + +F+++G+ + E A+K+A  ++   
Sbjct: 83  AEKFLHYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIA--RYHTG 140

Query: 77  HDVLVDFLG 85
              ++ FLG
Sbjct: 141 RKYIIAFLG 149

Length = 441

>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 31  EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL 80
           E A+ECAE L +  G G  +R  F+  G++AI +ALK+A R  + +  V+
Sbjct: 113 ETAIECAEKLTEIAG-GELNRVLFAPGGTSAIGMALKLA-RHITGNFKVV 160

Length = 459

>gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 9/72 (12%)

Query: 8   ELARDMGYTAARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIA 65
            L   +   A++F H     N Y  EP L  A+ L+      +A R +F ++G+ A E A
Sbjct: 59  ALREALNEQASKFWHT---GNGYTNEPVLRLAKKLIDAT---FADRVFFCNSGAEANEAA 112

Query: 66  LKMAFRKFSFDH 77
           LK+A RK++ D 
Sbjct: 113 LKLA-RKYAHDR 123

Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	158
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.95
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	99.94
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.92
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	99.9
PRK07482	461	hypothetical protein; Provisional	99.9
PRK07483	443	hypothetical protein; Provisional	99.89
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.89
PRK05965	459	hypothetical protein; Provisional	99.89
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.89
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.89
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.89
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.89
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.89
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.89
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	99.89
PRK06917	447	hypothetical protein; Provisional	99.88
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.88
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.88
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.88
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.88
PRK06541	460	hypothetical protein; Provisional	99.88
PRK07481	449	hypothetical protein; Provisional	99.88
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.88
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.88
PRK07480	456	putative aminotransferase; Validated	99.88
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.88
PRK06062	451	hypothetical protein; Provisional	99.88
PRK06105	460	aminotransferase; Provisional	99.88
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	99.87
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.87
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.87
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.87
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.87
PRK07036	466	hypothetical protein; Provisional	99.87
PRK08297	443	L-lysine aminotransferase; Provisional	99.86
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.86
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.86
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.86
PRK07678	451	aminotransferase; Validated	99.86
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	99.86
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.86
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.85
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.85
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.85
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.85
PLN00144	382	acetylornithine transaminase	99.85
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.85
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.84
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.84
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	99.84
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.84
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.84
PRK12403	460	putative aminotransferase; Provisional	99.84
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.84
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.83
PRK06148	1013	hypothetical protein; Provisional	99.83
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.82
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.82
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.81
PLN02624	474	ornithine-delta-aminotransferase	99.8
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.79
PRK07046	453	aminotransferase; Validated	99.79
PRK06149	972	hypothetical protein; Provisional	99.79
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.78
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.78
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.78
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.77
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.74
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.74
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	99.74
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	99.73
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.72
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.69
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.68
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.68
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.67
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.67
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.65
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	99.64
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.61
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.58
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.46
PRK04260	375	acetylornithine aminotransferase; Provisional	99.42
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.42
PRK02627	396	acetylornithine aminotransferase; Provisional	99.39
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	98.97
PRK07505	402	hypothetical protein; Provisional	98.94
PRK13393	406	5-aminolevulinate synthase; Provisional	98.6
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	98.06
PRK09064	407	5-aminolevulinate synthase; Validated	97.82
PRK07179	407	hypothetical protein; Provisional	97.6
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	97.09
PRK13392	410	5-aminolevulinate synthase; Provisional	96.91
PRK13520	371	L-tyrosine decarboxylase; Provisional	96.64
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	96.62
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	96.38
PLN02822	481	serine palmitoyltransferase	96.25
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	96.17
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	95.47
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	94.22
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	93.24
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	93.11
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	91.82
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	90.86
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	90.45
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	90.37
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	90.35
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	90.24
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	90.12
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	89.93
PRK06225	380	aspartate aminotransferase; Provisional	89.76
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	89.64
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	89.41
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	89.24
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	89.11
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	88.92
PLN02651	364	cysteine desulfurase	88.9
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	87.57
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	87.47
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	87.24
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	87.08
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	86.72
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	86.31
PLN02955	476	8-amino-7-oxononanoate synthase	85.9
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	85.14
PLN03032	374	serine decarboxylase; Provisional	84.91
PRK13034	416	serine hydroxymethyltransferase; Reviewed	84.84
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	84.84
PLN02721	353	threonine aldolase	84.09
PRK02948	381	cysteine desulfurase; Provisional	83.64
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	83.19
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	83.06
PRK14012	404	cysteine desulfurase; Provisional	82.48
PRK10534	333	L-threonine aldolase; Provisional	82.21
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	81.56
cd00609	350	AAT_like Aspartate aminotransferase family. This f	81.12
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	81.08
PLN02263	470	serine decarboxylase	81.04
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	81.03
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	80.32
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	80.3
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	80.23
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	80.04

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.95  E-value=4.7e-28  Score=210.21  Aligned_cols=116  Identities=27%  Similarity=0.230  Sum_probs=100.4

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCccc
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLV   81 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~   81 (158)
                      +||+||+|++|+++|++++.+.+ ..|.+++..+||++|++.+| . +++|||+|||+||||+|||+||+|+.   +.  
T Consensus        56 lGH~hP~iv~al~~Q~~kl~h~s-n~~~~~~~~~la~~L~~~s~-~-~d~vff~NSGaEA~EaAiKlARk~~~---~~--  127 (404)
T COG4992          56 LGHCHPALVEALKEQAEKLWHVS-NLFYNEPQAELAEKLVELSP-F-ADRVFFCNSGAEANEAALKLARKYTG---DP--  127 (404)
T ss_pred             cCCCCHHHHHHHHHHHHHhhhcc-cccCChHHHHHHHHHHhhCc-c-ccEEEEcCCcHHHHHHHHHHHHHHcC---CC--
Confidence            79999999999999999999986 57899999999999999998 6 89999999999999999999999853   11  


Q ss_pred             cccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC--CcccccccccccccccccCC
Q 031493           82 DFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG--TLEEAFFWTLLQFSCTTANG  146 (158)
Q Consensus        82 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~--~~~~~~~~~~~~~~~~~~~~  146 (158)
                        .|         .+||+          |.++|||||+|++|.++  +|++.|.+....|..++.|+
T Consensus       128 --~k---------~~Iia----------~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnD  173 (404)
T COG4992         128 --EK---------SKIIA----------FENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFND  173 (404)
T ss_pred             --CC---------cEEEE----------EcCCcCCccceeeeccCChhhccCCCCCCCCceecCCCC
Confidence              33         48999          99999999999999866  47888885555677766665

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=99.94  E-value=1e-26  Score=204.83  Aligned_cols=125  Identities=26%  Similarity=0.217  Sum_probs=102.0

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcC-CCCCCcEEEeCChHHHHHHHHHHHHhcccccCCc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG-KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDV   79 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P-~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~   79 (158)
                      .+||+||+|.+|+++|+++|.|+++..+.++++++||++|++++| ++ +++|||++|||||||.|||||++| ++.+|+
T Consensus        57 ~~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t~~Pa~~LA~~L~~~aP~~~-l~~vFf~~sGSeAvEtAlKma~qY-~~~~G~  134 (449)
T COG0161          57 NHGHGRPEIAEAIKKQLDKLPHVMFGGFTHEPAIELAEKLAELAPEGG-LDHVFFTDSGSEAVETALKMALQY-WRARGQ  134 (449)
T ss_pred             hcCcCCHHHHHHHHHHHHhCCchhhcccCCchHHHHHHHHHHhCCCCC-ccEEEEeCCchHHHHHHHHHHHHH-HHhcCC
Confidence            379999999999999999999997778889999999999999999 55 999999999999999999999986 455676


Q ss_pred             cccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCCc-cc--ccccccccccccccCCccc
Q 031493           80 LVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGTL-EE--AFFWTLLQFSCTTANGFFP  149 (158)
Q Consensus        80 ~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~~-~~--~~~~~~~~~~~~~~~~~~~  149 (158)
                        + +|         .++|+          +++||||.|+|++|..|.. ..  .++..+....+.+.+..|+
T Consensus       135 --p-~r---------~~~Is----------r~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~  185 (449)
T COG0161         135 --P-QR---------KKFIS----------RRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYR  185 (449)
T ss_pred             --C-cc---------eEEEE----------eccCcCcccchheeccCchhhhhhhccccccCceecCCCcccc
Confidence              2 34         47999          9999999999999998842 22  2233333444555555543

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.92  E-value=6.4e-25  Score=193.73  Aligned_cols=98  Identities=21%  Similarity=0.218  Sum_probs=86.5

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCccc
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLV   81 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~   81 (158)
                      +|||||+|++|+++|++++.|++...+..++.+++||+|.+++|...++++||+||||||||+|||+||.++    |+  
T Consensus        70 ~GH~hP~Vv~Av~~q~~~~~h~~~~~~~~e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~T----gr--  143 (447)
T COG0160          70 LGHNHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYT----GR--  143 (447)
T ss_pred             cCCCCHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHh----CC--
Confidence            699999999999999999998875344559999999999999997338999999999999999999999874    44  


Q ss_pred             cccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCCc
Q 031493           82 DFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGTL  128 (158)
Q Consensus        82 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~~  128 (158)
                                   ..||+          |.++|||+|.+++|.++..
T Consensus       144 -------------~~via----------f~~afHG~T~galslT~~~  167 (447)
T COG0160         144 -------------PGVIA----------FDGAFHGRTLGALSLTGSK  167 (447)
T ss_pred             -------------CcEEE----------ECCcccccchhhHHhccCc
Confidence                         26999          9999999999999987753

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=99.90  E-value=5.5e-24  Score=183.80  Aligned_cols=105  Identities=18%  Similarity=0.096  Sum_probs=92.6

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCccc
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLV   81 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~   81 (158)
                      +|||||+|++|+.+|+.++.|.. ..|.+++..+|||+|++.+|++ ++++||+||||||||+|+||||.|+    +.  
T Consensus        64 lGHchP~v~~a~~kQl~~l~H~t-~~~~~~pi~~~Ae~L~s~~P~~-l~~vfF~nsGsEANelal~mar~Yt----~~--  135 (442)
T KOG1404|consen   64 LGHCHPDVVAAAVKQLKKLYHTT-SGYLNPPIHDLAEALVSKLPGD-LKVVFFVNSGSEANELALKMARLYT----GN--  135 (442)
T ss_pred             cCCCChHHHHHHHHhhhhhEEee-ccccCCcHHHHHHHHHHhCCCC-ceEEEEecCCchHHHHHHHHHHHhc----CC--
Confidence            69999999999999999898875 4789999999999999999988 9999999999999999999999874    32  


Q ss_pred             cccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCCcccccccccc
Q 031493           82 DFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGTLEEAFFWTLL  137 (158)
Q Consensus        82 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~~~~~~~~~~~  137 (158)
                                   .+||+          ++++|||.|..++|.++.-..++..+..
T Consensus       136 -------------~diIa----------~r~~YHG~t~~t~glt~~~~~k~~~~~~  168 (442)
T KOG1404|consen  136 -------------LDIIA----------RRNSYHGNTLYTLGLTGLSPWKQNFPGV  168 (442)
T ss_pred             -------------ceEEE----------eeccccCCchhhcccccCCcccccCCCC
Confidence                         47999          9999999999999988765545555554

>PRK07482 hypothetical protein; Provisional

Probab=99.90  E-value=1.3e-23  Score=185.80  Aligned_cols=103  Identities=16%  Similarity=0.082  Sum_probs=86.9

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCC-CCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDV   79 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~-~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~   79 (158)
                      .+||+||+|++|+++|++++.+.+. ..+.+++.++|||+|++++|.+ +++|+|+||||||||+|||+||+++.. +|+
T Consensus        63 ~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGSEAve~AlKlAr~~~~~-~g~  140 (461)
T PRK07482         63 NVGYGRTEVAEAIAEQAKELAYYHTYVGHGTEASITLSKRIIDRAPAG-MSKVYYGLSGSDANETQIKLVWYYNNV-LGR  140 (461)
T ss_pred             cCCCCCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCchHHHHHHHHHHHHHHHHh-cCC
Confidence            4899999999999999999876542 2578999999999999999876 899999999999999999999986432 343


Q ss_pred             cccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           80 LVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        80 ~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                        + .|         .+||+          |+++|||+|++++|.++.
T Consensus       141 --~-~r---------~~Ii~----------~~~~YHG~t~ga~s~~~~  166 (461)
T PRK07482        141 --P-EK---------KKIIS----------RWRGYHGSGVVTGSLTGL  166 (461)
T ss_pred             --C-CC---------ceEEE----------ecCccCCccHhhhhccCC
Confidence              1 23         38999          999999999998887664

>PRK07483 hypothetical protein; Provisional

Probab=99.89  E-value=4.5e-23  Score=181.54  Aligned_cols=103  Identities=21%  Similarity=0.200  Sum_probs=87.1

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+++...+.+++..+|||+|++++|.+ +++|+|+||||||||+|||+||+++. .+|+ 
T Consensus        43 ~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGsEAve~AlklAr~~~~-~~g~-  119 (443)
T PRK07483         43 CLGHSHPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLVAAAPAG-LEHVYFVSGGSEAVEAALKLARQYFV-EIGQ-  119 (443)
T ss_pred             ccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEcCCcHHHHHHHHHHHHHHHH-hcCC-
Confidence            48999999999999999998765533467899999999999999876 89999999999999999999998743 2343 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                       + .|         .+||+          |+++|||+|.+++|.++.
T Consensus       120 -~-~r---------~~Ii~----------~~~~YHG~t~~a~s~s~~  145 (443)
T PRK07483        120 -P-QR---------RHFIA----------RRQSYHGNTLGALAIGGN  145 (443)
T ss_pred             -C-CC---------cEEEE----------ECCCcCCcCHHHhhhcCC
Confidence             1 23         37999          999999999998887664

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.89  E-value=4.6e-23  Score=181.42  Aligned_cols=103  Identities=17%  Similarity=0.107  Sum_probs=87.3

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.....+.+++..+|||+|++++|.+ +++|+|+||||||||+|||+||+++.. +|+ 
T Consensus        59 ~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~AlklAr~~~~~-~g~-  135 (442)
T PRK13360         59 NAGHGRPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIAEIAPGG-LNHVFFTNSGSESVDTALKIALAYHRA-RGE-  135 (442)
T ss_pred             ccCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHHHHHHHh-cCC-
Confidence            37999999999999999998876544578999999999999999876 899999999999999999999987432 232 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                       + .|         .+||+          |+++|||+|.|++|.++.
T Consensus       136 -~-~r---------~~ii~----------~~~~yHG~t~gals~tg~  161 (442)
T PRK13360        136 -G-SR---------TRLIG----------RERGYHGVGFGGISVGGI  161 (442)
T ss_pred             -C-CC---------cEEEE----------EcCCcCCccHhhhhccCC
Confidence             0 12         37999          999999999999887764

>PRK05965 hypothetical protein; Provisional

Probab=99.89  E-value=3.7e-23  Score=182.75  Aligned_cols=103  Identities=13%  Similarity=0.041  Sum_probs=86.3

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCC-CCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDV   79 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~-~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~   79 (158)
                      .+||+||+|++|+++|++++.+... ..+.+++.++|||+|++++|.+ +++|+|+||||||||+|||+||+|+. .+|+
T Consensus        59 ~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGSEAve~AlKlAr~~~~-~~g~  136 (459)
T PRK05965         59 NVGYGQESIVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAERAPGS-LNHVYFTLGGSDAVDSAVRFIRHYWN-ATGR  136 (459)
T ss_pred             cCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCChhHHHHHHHHHHHHHHH-hcCC
Confidence            4799999999999999999887542 2467899999999999999876 89999999999999999999998743 2343


Q ss_pred             cccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           80 LVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        80 ~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                        + .|         .+||+          +.++|||.|.+++|..+.
T Consensus       137 --~-~r---------~kii~----------~~~~YHG~t~~a~s~t~~  162 (459)
T PRK05965        137 --P-SK---------KQFIS----------LERGYHGSSSVGAGLTAL  162 (459)
T ss_pred             --C-Cc---------cEEEE----------ecCCcCcccHHHHHhcCC
Confidence              1 23         38999          999999999987776553

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.89  E-value=6.4e-23  Score=181.29  Aligned_cols=103  Identities=25%  Similarity=0.290  Sum_probs=87.3

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      ++||+||+|++|+++|++++.+.....+.+++..+|||+|++++|.+ +++|+|+||||||||+|||+||+++.. +|. 
T Consensus        69 ~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseAve~AlklAr~~~~~-~g~-  145 (460)
T PRK06916         69 VHGHQVPELDEAIREQLNKIAHSTLLGLANVPSILLAEKLIEVVPEG-LKKVFYSDSGATAVEIAIKMAFQYWQN-KGK-  145 (460)
T ss_pred             hcCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHHHHHHHh-cCC-
Confidence            48999999999999999998876544578999999999999999876 789999999999999999999987532 232 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                       + .|         .+||+          |+++|||+|.+++|.++.
T Consensus       146 -t-gr---------~~ii~----------~~~~YHG~t~~als~s~~  171 (460)
T PRK06916        146 -P-KK---------QRFVT----------LKNAYHGDTIGAVSVGAI  171 (460)
T ss_pred             -C-CC---------cEEEE----------ECCcCCcccHHhHhccCC
Confidence             1 22         37999          999999999998887653

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.89  E-value=6.4e-23  Score=182.15  Aligned_cols=104  Identities=26%  Similarity=0.326  Sum_probs=87.3

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCC----CCCcEEEeCChHHHHHHHHHHHHhccccc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG----WASRAYFSDNGSTAIEIALKMAFRKFSFD   76 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~----~l~~v~f~~SGSEA~E~AlKlAR~~~~~~   76 (158)
                      .+||+||+|++|+++|++++.+.....+.+++..+|||+|++++|..    ++++|+|+||||||||+|||+||+|+.. 
T Consensus        77 ~lGh~~p~i~~Ai~~q~~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~~~-  155 (472)
T PRK08742         77 LFGHAEPRIGAAIAAQAGELEQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYFHN-  155 (472)
T ss_pred             cCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHHHh-
Confidence            48999999999999999998876544678999999999999998751    2789999999999999999999997543 


Q ss_pred             CCccccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           77 HDVLVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        77 ~g~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                      +|+  + .|         .+||+          |+++|||+|++++|.++.
T Consensus       156 ~g~--~-~r---------~~ii~----------~~~syHG~t~gals~~~~  184 (472)
T PRK08742        156 RGE--H-RR---------TRFIA----------LENGYHGETIGALAVGDI  184 (472)
T ss_pred             cCC--C-CC---------cEEEE----------ECCCcCCCchhhhhccCC
Confidence            243  1 22         38999          999999999999887664

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.89  E-value=6.3e-23  Score=180.03  Aligned_cols=102  Identities=25%  Similarity=0.269  Sum_probs=87.2

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+..+..+.+++..+|||+|++.+|.+ +++|+|++|||||||+|||+||+++.. +|+ 
T Consensus        57 ~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~AlklAr~~~~~-~g~-  133 (429)
T PRK06173         57 LHGYNHPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILPPS-LNKIFFADSGSVAVEVAMKMALQYQQA-KGE-  133 (429)
T ss_pred             cCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCCchHHHHHHHHHHHHHHHH-hCC-
Confidence            47999999999999999998876544578999999999999999876 899999999999999999999987432 343 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                       + .|         .+||+          ++++|||+|.+++|.++
T Consensus       134 -~-~r---------~~ii~----------~~~~yHG~t~~a~s~~~  158 (429)
T PRK06173        134 -V-QR---------TKFAT----------IRSGYHGDTWHAMSVCD  158 (429)
T ss_pred             -C-CC---------cEEEE----------ECCCcCCcchhhhccCC
Confidence             1 22         37999          99999999999888755

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.89  E-value=8.1e-23  Score=178.94  Aligned_cols=102  Identities=25%  Similarity=0.273  Sum_probs=87.1

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .|||+||+|++|+++|++++.+..+..+.+++..+|||+|++++|.+ +++|+|++|||||||+|||+||+++.. +|+ 
T Consensus        53 ~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~AlklAr~~~~~-~g~-  129 (422)
T PRK05630         53 AHGHGHPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKLLNLTDNG-LDHVFYSDSGSVSVEVAIKMALQYSKG-QGH-  129 (422)
T ss_pred             cCCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHhhCCCC-cCEEEEeCCcHHHHHHHHHHHHHHHHh-cCC-
Confidence            48999999999999999998876544578999999999999999876 899999999999999999999987532 233 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                       + .|         .+||+          ++++|||+|.+++|..+
T Consensus       130 -~-~r---------~~ii~----------~~~~yHG~t~~als~~~  154 (422)
T PRK05630        130 -P-ER---------TRLLT----------WRSGYHGDTFAAMSVCD  154 (422)
T ss_pred             -C-CC---------cEEEE----------ECCCcCCccHHHhccCC
Confidence             1 22         37999          99999999999888755

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.89  E-value=8.7e-23  Score=180.23  Aligned_cols=103  Identities=24%  Similarity=0.284  Sum_probs=87.5

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.....+.+++..+|||+|++++|.. +++|+|+||||||||+|||+||+++.. +|. 
T Consensus        67 ~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGseAve~AlKlA~~~~~~-rg~-  143 (453)
T PRK06943         67 LFGHANPRINAALKDQLDTLEHAMLAGCTHEPAIELAERLAALTGGT-LGHAFFASDGASAVEIALKMSFHAWRN-RGR-  143 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCCHHHHHHHHHHHHHHHHH-hCC-
Confidence            48999999999999999998876544678999999999999999866 789999999999999999999987532 232 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                       + .|         .+||+          ++++|||+|+|++|.++.
T Consensus       144 -~-~r---------~~Ii~----------~~~~yHG~t~gals~~~~  169 (453)
T PRK06943        144 -G-DK---------REFVC----------LANGYHGETIGALGVTDV  169 (453)
T ss_pred             -C-CC---------CEEEE----------ECCCcCCCcHHhhcccCC
Confidence             1 22         37999          999999999998887764

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.89  E-value=8.6e-23  Score=180.91  Aligned_cols=103  Identities=25%  Similarity=0.330  Sum_probs=87.7

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      ++||+||+|++|+++|++++.+.....+.++...+|||+|++++|.+ +++|+|+||||||||+|||+||+++.. +|+ 
T Consensus        60 ~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGsEAve~AlKlAr~~~~~-~g~-  136 (466)
T PRK07030         60 VFGHANPRINQRIKDQVDQLEHVILAGFSHEPVIELSERLVKITPPG-LSRCFYADNGSSAIEVALKMSFHYWRN-RGK-  136 (466)
T ss_pred             cCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHHHHHHHH-hCC-
Confidence            48999999999999999998876544678999999999999999866 899999999999999999999987532 243 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                       + .|         .+||+          ++++|||+|.+++|.++.
T Consensus       137 -t-~r---------~~ii~----------~~~~yHG~t~ga~s~~~~  162 (466)
T PRK07030        137 -P-RK---------KRFVT----------LTNSYHGETLAAMSVGDV  162 (466)
T ss_pred             -C-CC---------cEEEE----------ECCCcCcccHHHHhccCC
Confidence             1 22         37999          999999999998887654

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.89  E-value=6.6e-23  Score=191.98  Aligned_cols=113  Identities=55%  Similarity=0.748  Sum_probs=87.5

Q ss_pred             CC-CCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            2 FR-WFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         2 ~G-h~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      +| |+||+|++|+++|++++.|+++..+.++++++|||+|++..|.+++++|||++|||||||+||||||++++.++|+ 
T Consensus       379 lG~h~~p~I~~Ai~~Qa~rl~hv~~~~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~-  457 (817)
T PLN02974        379 PDPTLQPELARAVAYAAGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGF-  457 (817)
T ss_pred             CCcCCCHHHHHHHHHHHhhCCccccCccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCC-
Confidence            67 6899999999999999999876578899999999999996553347899999999999999999998655544453 


Q ss_pred             ccccC-C-CcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLG-K-DTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~-~-~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                       +..+ . .........+||+          ++++|||.|+|++|..+
T Consensus       458 -~~~~~~~~~~~~~~r~kIIa----------~~gsYHG~T~GAms~sg  494 (817)
T PLN02974        458 -LENSGNEKRGGDLIELKVLA----------LDGSYHGDTLGAMEAQA  494 (817)
T ss_pred             -CcccccccccccCCCCEEEE----------ECCCcCCCCHHHHhhCC
Confidence             1000 0 0000001158999          99999999999998765

>PRK06917 hypothetical protein; Provisional

Probab=99.88  E-value=1.1e-22  Score=179.24  Aligned_cols=103  Identities=24%  Similarity=0.200  Sum_probs=86.6

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.....+.+++..+|||+|++++|.. +++++|+||||||||+|||+||+++.. +|+ 
T Consensus        44 ~lGh~hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGsEAve~AlklAr~~~~~-rg~-  120 (447)
T PRK06917         44 GIGHGVKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSPGD-LNWSFFVNSGSEANETAMKIAIQHFQE-RGI-  120 (447)
T ss_pred             cCCCCCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCChHHHHHHHHHHHHHHHHh-cCC-
Confidence            48999999999999999998765433578999999999999999876 789999999999999999999987532 343 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                       + .|         .+||+          |+++|||.|.++++..+.
T Consensus       121 -t-~r---------~~ii~----------~~~~yHG~t~~als~~~~  146 (447)
T PRK06917        121 -Q-GK---------HKILS----------RWMSYHGITMGALSMSGH  146 (447)
T ss_pred             -C-CC---------CEEEE----------ECCCcCCccHHHHHhcCC
Confidence             1 22         37999          999999999998876553

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.88  E-value=9.5e-23  Score=179.82  Aligned_cols=99  Identities=15%  Similarity=0.041  Sum_probs=85.1

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.. ..+.++...+|||+|+++.|.+ +++|+|+||||||||+|+|+||+++. .+|+ 
T Consensus        88 ~lGh~hp~v~~Av~~ql~~l~~~~-~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~SGsEA~e~AlklAr~~t~-~~gr-  163 (442)
T TIGR03372        88 NVGHRNPNVIAAVENQLAKQPLHS-QELLDPLRALLAKTLAALTPGK-LKYSFFCNSGTESVEAALKLAKAYQS-PRGK-  163 (442)
T ss_pred             hcCCCCHHHHHHHHHHHHhCCCcc-cccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCchHHHHHHHHHHHHHHh-hcCC-
Confidence            379999999999999999987654 2467899999999999999977 78999999999999999999998742 1233 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                                    .+||+          +.++|||+|.+++|.++.
T Consensus       164 --------------~~ii~----------~~~~yHG~t~~~ls~t~~  186 (442)
T TIGR03372       164 --------------FTFIA----------ASGAFHGKSLGALSATAK  186 (442)
T ss_pred             --------------cEEEE----------ECCCccCCCHHHhhccCC
Confidence                          37999          999999999998887653

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.88  E-value=1.1e-22  Score=178.80  Aligned_cols=96  Identities=19%  Similarity=0.163  Sum_probs=84.1

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCC-CcEEEeCChHHHHHHHHHHHHhcccccCCc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWA-SRAYFSDNGSTAIEIALKMAFRKFSFDHDV   79 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l-~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~   79 (158)
                      .+||+||+|++|+++|++++.+.....+.+++..+|||+|++++|.+ + ++|+|+||||||||+|||+||+++    |+
T Consensus        67 ~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~-~~~~v~f~~sGseA~e~AlklAr~~t----gr  141 (451)
T PRK06918         67 NVGHSHPKVKEALHKQVDQYIHTGFNVMMYEPYIELAEKLAALAPGS-FDKKVLFLNSGAEAVENAVKIARKYT----KR  141 (451)
T ss_pred             CCCCCCHHHHHHHHHHHHhccCccccccccHHHHHHHHHHHHhCCCC-CCCEEEEcCCcHHHHHHHHHHHHHHh----CC
Confidence            48999999999999999998876544567899999999999999865 5 599999999999999999999873    43


Q ss_pred             cccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           80 LVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        80 ~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                                     .+||+          |+++|||+|.+++|..+
T Consensus       142 ---------------~~ii~----------~~~~yHG~t~~~ls~~~  163 (451)
T PRK06918        142 ---------------QGIIS----------FSRGFHGRTLMTMTMTS  163 (451)
T ss_pred             ---------------CcEEE----------ECCCcCccchhhhhhcC
Confidence                           27999          99999999999888765

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.88  E-value=1.4e-22  Score=176.53  Aligned_cols=103  Identities=26%  Similarity=0.266  Sum_probs=86.8

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+..+..+.++...+|||+|++.+|.+ +++|+|++|||||||+|||+||+++.. +|+ 
T Consensus        55 ~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseA~e~A~klar~~~~~-~~~-  131 (423)
T PRK05964         55 THGHNHPYIDQAIREQLDRLDHVIFAGFTHEPAERLAQRLVALTPGG-LDHVFFSDSGSVAVEVALKMALQYWRN-RGE-  131 (423)
T ss_pred             cCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHHHHHHHh-cCC-
Confidence            48999999999999999998876543578999999999999999866 889999999999999999999987432 333 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                       + .|         .+||+          +.++|||+|.+++|..+.
T Consensus       132 -~-~r---------~~ii~----------~~~~yHG~t~~~ls~~~~  157 (423)
T PRK05964        132 -P-GR---------SRFLS----------LRGGYHGDTIGTMSVGDR  157 (423)
T ss_pred             -C-CC---------cEEEE----------EcCCcCCccHHHHhcCCC
Confidence             1 22         38999          999999999998876553

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.88  E-value=1.3e-22  Score=178.15  Aligned_cols=101  Identities=24%  Similarity=0.278  Sum_probs=86.4

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.....+.+++..+|||+|++++|.+ +++|+|+||||||||+|||+||+++.. +|. 
T Consensus        56 ~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~-~~~v~f~~SGsEAve~AlklAr~~~~~-~g~-  132 (428)
T PRK07986         56 IHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKLVAMTPQP-LECVFLADSGSVAVEVAMKMALQYWQA-KGE-  132 (428)
T ss_pred             cCCCCCHHHHHHHHHHHhhcCCccccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCCcHHHHHHHHHHHHHHHHh-cCC-
Confidence            47999999999999999998876544568999999999999999876 899999999999999999999987432 222 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                         .|         .+||+          ++++|||+|.+++|..+
T Consensus       133 ---~r---------~kii~----------~~~~yHG~t~~a~s~~~  156 (428)
T PRK07986        133 ---PR---------QRFLT----------LRHGYHGDTFGAMSVCD  156 (428)
T ss_pred             ---CC---------cEEEE----------ECCCcCCCcHhhhcccC
Confidence               22         37999          99999999999888755

>PRK06541 hypothetical protein; Provisional

Probab=99.88  E-value=1.9e-22  Score=178.43  Aligned_cols=103  Identities=25%  Similarity=0.202  Sum_probs=87.3

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.....+.+++..+||++|++++|.+ +++|+|+||||||||+|||+||+++. .+|+ 
T Consensus        65 ~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~v~f~~sGseAve~AlklAr~~~~-~~g~-  141 (460)
T PRK06541         65 QVGHGRAELAEAAAKQAGTLAFFPLWSYAHPPAIELAERLAALAPGD-LNRVFFTTGGSEAVESAWKLAKQYFK-LTGK-  141 (460)
T ss_pred             cCCCCCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCCCC-cCEEEEcCCcHHHHHHHHHHHHHHHH-hcCC-
Confidence            38999999999999999998876434678999999999999999876 89999999999999999999998742 2343 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                       + .|         .+||+          |+++|||+|.+++|..+.
T Consensus       142 -~-~r---------~~ii~----------~~~~yHG~t~~a~s~~~~  167 (460)
T PRK06541        142 -P-GK---------HKVIS----------RAIAYHGTTQGALAITGL  167 (460)
T ss_pred             -C-Cc---------cEEEE----------EcCcccCcchhhhcCcCC
Confidence             1 22         37999          999999999998887654

>PRK07481 hypothetical protein; Provisional

Probab=99.88  E-value=2.3e-22  Score=177.20  Aligned_cols=104  Identities=19%  Similarity=0.139  Sum_probs=85.8

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCC-CCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDV   79 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~-~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~   79 (158)
                      .+||+||+|++|+++|++++.+... ..+.+++.++|||+|++++|++++++|+|++|||||||+|||+||+++.. +|+
T Consensus        55 ~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~~~~-~g~  133 (449)
T PRK07481         55 NVGHNREEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKV-RGQ  133 (449)
T ss_pred             cCCCCCHHHHHHHHHHHHhccceecccccCCHHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHHh-cCC
Confidence            4899999999999999999887542 25689999999999999984322889999999999999999999987532 343


Q ss_pred             cccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           80 LVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        80 ~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                        + .|         .+||+          ++++|||+|.+++|.++.
T Consensus       134 --~-~r---------~~ii~----------~~~~yHG~t~ga~s~~~~  159 (449)
T PRK07481        134 --P-ER---------TKFIS----------LKQGYHGTHFGGASVNGN  159 (449)
T ss_pred             --C-CC---------cEEEE----------ECCCcCCcchhhhccCCC
Confidence              1 22         37999          999999999998887653

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.88  E-value=2.3e-22  Score=177.15  Aligned_cols=103  Identities=19%  Similarity=0.128  Sum_probs=87.7

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.....+.+++..+|||+|++++|.+ +++|+|+||||||||+|||+||+++.. +|+ 
T Consensus        62 ~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~L~~~~p~~-~~~v~f~~sGseAve~AlklAr~~~~~-~g~-  138 (445)
T PRK09221         62 NAGHGRPEIVEAVARQAATLDYAPAFQMGHPLAFELAERLAELAPGG-LDHVFFTNSGSESVDTALKIALAYHRA-RGQ-  138 (445)
T ss_pred             cCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHHHHHHHh-cCC-
Confidence            48999999999999999998876544578999999999999999876 899999999999999999999987532 232 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                       + .|         .+||+          |+++|||+|.|++|.++.
T Consensus       139 -~-~r---------~~ii~----------~~~~yHG~t~gals~~~~  164 (445)
T PRK09221        139 -G-TR---------TRLIG----------RERGYHGVGFGGISVGGI  164 (445)
T ss_pred             -C-CC---------cEEEE----------ECCCcCccchhhhccCCC
Confidence             1 12         37999          999999999999887764

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.88  E-value=1.5e-22  Score=178.99  Aligned_cols=96  Identities=21%  Similarity=0.123  Sum_probs=82.8

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.....+.++...+|||+|++.+|.+ +++|+|+||||||||+|||+||+++    |+ 
T Consensus        66 ~lGh~~p~i~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGsEA~e~AlklAr~~t----gr-  139 (457)
T PRK05639         66 STGYSHPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISPIE-NPKVLFGLSGSDAVDMAIKVSKFST----RR-  139 (457)
T ss_pred             ccCCCCHHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHhhCCCC-cCEEEEeCchHHHHHHHHHHHHHhc----CC-
Confidence            48999999999999999998776533345788999999999999866 7899999999999999999999863    43 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                                    .+||+          |+++|||+|.+++|..+
T Consensus       140 --------------~~ii~----------~~~~yHG~t~~a~s~~~  161 (457)
T PRK05639        140 --------------PWILA----------FIGAYHGQTLGATSVAA  161 (457)
T ss_pred             --------------CeEEE----------ECCCcCCccHHHHHHcC
Confidence                          27999          99999999999877654

>PRK07480 putative aminotransferase; Validated

Probab=99.88  E-value=2.8e-22  Score=177.11  Aligned_cols=103  Identities=19%  Similarity=0.115  Sum_probs=86.6

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCC-CCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDV   79 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~-~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~   79 (158)
                      .+||+||+|++|+++|++++.+... ..+.++...+|||+|++.+|.+ +++|+|++|||||||+|||+||+++. .+|+
T Consensus        63 ~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~AlklAr~~~~-~~g~  140 (456)
T PRK07480         63 NVGYGRKELADAAARQMRELPYYNTFFKTTHPPAIELAAKLAEVAPPG-FNHVFFTNSGSEANDTVLRMVRHYWA-LKGK  140 (456)
T ss_pred             cCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHHHHHHH-hcCC
Confidence            4899999999999999999876532 2468999999999999999876 89999999999999999999998743 2343


Q ss_pred             cccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           80 LVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        80 ~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                        + .|         .+||+          +.++|||+|++++|.++.
T Consensus       141 --~-~r---------~~ii~----------~~~~yHG~tl~a~s~~g~  166 (456)
T PRK07480        141 --P-QK---------KVIIS----------RKNGYHGSTVAGASLGGM  166 (456)
T ss_pred             --C-CC---------cEEEE----------ECCCcCCcchhhhhccCC
Confidence              1 22         37999          999999999998887664

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.88  E-value=2.2e-22  Score=177.02  Aligned_cols=97  Identities=23%  Similarity=0.277  Sum_probs=84.1

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.....+.+++..+|||+|++++|.+++++|+|+||||||||+|||+||++    +|+ 
T Consensus        67 ~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~~----tgr-  141 (441)
T PRK05769         67 NVGHAHPKVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYH----TGR-  141 (441)
T ss_pred             ccCCCCHHHHHHHHHHHHhccCccCcccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHH----hCC-
Confidence            489999999999999999988765445678999999999999998543689999999999999999999987    343 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                                    .+||+          +.++|||.|.+++|..+
T Consensus       142 --------------~~Ii~----------~~~~yHG~t~~~ls~t~  163 (441)
T PRK05769        142 --------------KYIIA----------FLGAFHGRTYGSLSLTA  163 (441)
T ss_pred             --------------CeEEE----------ECCCcCCccHHHHHhcC
Confidence                          27999          99999999999887654

>PRK06062 hypothetical protein; Provisional

Probab=99.88  E-value=1.8e-22  Score=178.10  Aligned_cols=96  Identities=21%  Similarity=0.149  Sum_probs=85.7

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.+. .+.+++..+|||+|++++|.+ +++|+|+||||||||+|||+||+++    |+ 
T Consensus        66 ~lGh~~p~v~~Ai~~q~~~~~~~~~-~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGsEAve~AlklAr~~t----gr-  138 (451)
T PRK06062         66 NIGHQHPKVVAAIQEQAARLCTVAP-AHANDARSEAARLIAERAPGD-LSKVFFTNGGADANEHAVRMARLHT----GR-  138 (451)
T ss_pred             cCCCCCHHHHHHHHHHHHhcCCcCC-ccCCHHHHHHHHHHHHhCCCC-CCEEEEcCChHHHHHHHHHHHHHhh----CC-
Confidence            4899999999999999999887754 678999999999999999876 8999999999999999999999873    43 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                                    .+||+          +.++|||+|.+++|.++.
T Consensus       139 --------------~~ii~----------~~~~yHG~t~~als~~~~  161 (451)
T PRK06062        139 --------------PKVLS----------AYRSYHGGTGSAINLTGD  161 (451)
T ss_pred             --------------ceEEE----------EeCCCCCCCHHHHhhcCC
Confidence                          27999          999999999998887653

>PRK06105 aminotransferase; Provisional

Probab=99.88  E-value=3.7e-22  Score=176.44  Aligned_cols=102  Identities=16%  Similarity=0.154  Sum_probs=85.2

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCC-CCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDV   79 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~-~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~   79 (158)
                      .+||+||+|++|+++|++++.+.+. ..+.++..++|||+|++++|.+ +++|+|+||||||||+|||+||+++. .+|.
T Consensus        61 ~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseAve~AlKlar~~~~-~~g~  138 (460)
T PRK06105         61 ALGFSEQRLVEAAARQMKKLPFYHTFSHKSHGPVIDLAEKLVAMAPVP-MSKVFFTNSGSEANDTVVKLVWYYNN-ALGR  138 (460)
T ss_pred             cCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCcHHHHHHHHHHHHHHHH-hcCC
Confidence            4899999999999999999876432 2467999999999999999876 89999999999999999999997642 2232


Q ss_pred             cccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           80 LVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        80 ~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                        + .|         .+||+          +.++|||+|++++|.++
T Consensus       139 --t-~r---------~~il~----------~~~~yHG~t~~a~s~t~  163 (460)
T PRK06105        139 --P-EK---------KKIIS----------RQRGYHGVTIASASLTG  163 (460)
T ss_pred             --C-CC---------cEEEE----------ecCccCCcchhheeccC
Confidence              1 22         37999          99999999999888765

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.87  E-value=2.2e-22  Score=174.46  Aligned_cols=109  Identities=29%  Similarity=0.292  Sum_probs=89.4

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCccc
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLV   81 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~   81 (158)
                      +||+||+|.+|+.+|+.++.|.+. .+.+.++++++++|.+....++.++|||+||||||||.|||+||+++...++.  
T Consensus        70 ~Ghanpev~ral~~q~~k~~hs~~-~~~t~eav~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~--  146 (433)
T KOG1401|consen   70 LGHANPEVARALAEQAKKLGHSSN-GYFTLEAVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKKHPE--  146 (433)
T ss_pred             cCCCCHHHHHHHHHHHhhheeccC-ccccHHHHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhhcccCCc--
Confidence            799999999999999999999864 44455599999999998766568999999999999999999999986543322  


Q ss_pred             cccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC--Cccccccc
Q 031493           82 DFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG--TLEEAFFW  134 (158)
Q Consensus        82 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~--~~~~~~~~  134 (158)
                         ++        ++||+          |+|+|||+|+|++|..+  .|.-+|+.
T Consensus       147 ---~~--------t~~Ia----------f~nsyHG~tlgals~~~~s~y~~~~~p  180 (433)
T KOG1401|consen  147 ---KK--------TKFIA----------FENSYHGRTLGALSVTGNSKYGLPFDP  180 (433)
T ss_pred             ---cc--------eeEEE----------EecCcCCcchhHHHhhcccccCCCCCC
Confidence               21        58999          99999999999999543  45555544

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.87  E-value=3.7e-22  Score=176.67  Aligned_cols=99  Identities=15%  Similarity=0.028  Sum_probs=85.3

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.+ ..+.++...+|||+|++++|.+ +++|+|+||||||||+|||+||+++.. +|+ 
T Consensus        95 ~lGH~~p~v~~Ai~~ql~~l~~~~-~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGsEAve~AlklAr~~t~~-~gr-  170 (459)
T PRK11522         95 NVGHRNPVVVSAVQNQLAKQPLHS-QELLDPLRAMLAKTLAALTPGK-LKYSFFCNSGTESVEAALKLAKAYQSP-RGK-  170 (459)
T ss_pred             hcCCCCHHHHHHHHHHHhhCcccc-cccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCchHHHHHHHHHHHHHhcc-CCC-
Confidence            489999999999999999987764 3567999999999999999977 889999999999999999999987421 122 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                                    .+||+          ++++|||+|.+++|.++.
T Consensus       171 --------------~~ii~----------~~~~yHG~t~~~ls~~~~  193 (459)
T PRK11522        171 --------------FTFIA----------TSGAFHGKSLGALSATAK  193 (459)
T ss_pred             --------------cEEEE----------ecCCCCCCcHHHhhhcCC
Confidence                          37999          999999999998887653

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.87  E-value=3.6e-22  Score=173.89  Aligned_cols=97  Identities=19%  Similarity=0.123  Sum_probs=83.8

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.....+.+++..+|||+|++++|..++++|+|++|||||||+|||+||++    +|+ 
T Consensus        46 ~lGh~~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~----tgr-  120 (420)
T TIGR00700        46 NIGHSHPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSY----TGR-  120 (420)
T ss_pred             cCCCCCHHHHHHHHHHHHhccCccccccCChHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHh----cCC-
Confidence            489999999999999999988765434678889999999999998532689999999999999999999987    344 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                                    .+||+          |.++|||+|.+++|.++
T Consensus       121 --------------~~ii~----------~~~~yHG~t~~~~~~~~  142 (420)
T TIGR00700       121 --------------PGVVA----------FDHGFHGRTNMTMALTA  142 (420)
T ss_pred             --------------CcEEE----------ECCCcCCCcHHHHHhcC
Confidence                          26999          99999999999887655

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.87  E-value=3.7e-22  Score=174.84  Aligned_cols=97  Identities=22%  Similarity=0.119  Sum_probs=83.5

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.....+.++...+|||+|++.+|.+..++|+|+||||||||+|||+||++    +|+ 
T Consensus        53 ~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr~~----tgr-  127 (425)
T PRK07495         53 NTGHRHPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAA----TGR-  127 (425)
T ss_pred             ccCCCCHHHHHHHHHHHhhccCcccCccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHh----hCC-
Confidence            479999999999999999988764335778999999999999998652379999999999999999999987    344 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                                    .+||+          |+++|||+|+++++..+
T Consensus       128 --------------~~ii~----------~~~~yHG~t~~~~~~~~  149 (425)
T PRK07495        128 --------------SAVIA----------FGGGFHGRTFMGMSLTG  149 (425)
T ss_pred             --------------CeEEE----------ECCCcCCccHHHhhhcC
Confidence                          27999          99999999999877654

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.87  E-value=3.7e-22  Score=175.69  Aligned_cols=97  Identities=19%  Similarity=0.032  Sum_probs=84.8

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.+...+.++..++|||+|++++|.+ +++|+|+||||||||+|||+||+++    |+ 
T Consensus        54 ~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p~~-~~~v~f~~sGsEAve~AlklAr~~t----gr-  127 (443)
T PRK08360         54 NVGHNNPRVVKAIKEQTDKLIHYTPIYGFPVEPLLLAEKLIEIAPGD-NPKVSFGLSGSDANDGAIKFARAYT----KR-  127 (443)
T ss_pred             ccCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCC-CCEEEEcCCHHHHHHHHHHHHHHhc----CC-
Confidence            48999999999999999998876543456889999999999999876 7899999999999999999999873    43 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                                    .+||+          +.++|||.|.+++|.++.
T Consensus       128 --------------~~ii~----------~~~~yHG~t~~a~s~~~~  150 (443)
T PRK08360        128 --------------RKILS----------YLRSYYGSTYGAMSLTGL  150 (443)
T ss_pred             --------------CeEEE----------EeCCcCCcCHHHHHhcCC
Confidence                          27999          999999999998877653

>PRK07036 hypothetical protein; Provisional

Probab=99.87  E-value=7e-22  Score=175.02  Aligned_cols=103  Identities=19%  Similarity=0.109  Sum_probs=86.3

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCC-CCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPE-NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDV   79 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~-~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~   79 (158)
                      .+||+||+|++|+++|++++.+..... +.+++..+|||+|++++|.+ +++|+|+||||||||+|||+||+++.. +|+
T Consensus        64 ~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~AlklAr~~~~~-~g~  141 (466)
T PRK07036         64 NVGYGREEMADAIADQARRLPYYTPFGDMTNAPAAELAAKLAELAPGD-LNHVFLTTGGSTAVDSALRFVHYYFNV-RGR  141 (466)
T ss_pred             cCCCCCHHHHHHHHHHHHhCcccccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCchHHHHHHHHHHHHHHHh-cCC
Confidence            489999999999999999987754333 78999999999999999877 899999999999999999999986422 342


Q ss_pred             cccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           80 LVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        80 ~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                        + .|         .+||+          |.++|||.|.+++|.++.
T Consensus       142 --t-~r---------~~Ii~----------~~~~YHG~t~~a~s~~~~  167 (466)
T PRK07036        142 --P-AK---------KHIIT----------RGDAYHGSTYLTASLTGK  167 (466)
T ss_pred             --C-Cc---------cEEEE----------EcCccCCccHhhhcccCC
Confidence              1 22         37999          999999999998887664

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.86  E-value=7.8e-22  Score=173.69  Aligned_cols=105  Identities=19%  Similarity=0.109  Sum_probs=84.7

Q ss_pred             CCCCCcHHHHH--HHHHHHHhcCcc--CCCCCCChHHHHHHHHHHhhc-CCCCCCcEEEeCChHHHHHHHHHHHHhcccc
Q 031493            1 MFRWFQIELAR--DMGYTAARFGHV--MFPENVYEPALECAELLLQGV-GKGWASRAYFSDNGSTAIEIALKMAFRKFSF   75 (158)
Q Consensus         1 ~~Gh~hP~Iv~--Av~eQl~~l~~~--~~~~~~~~~~~~LAe~L~~~~-P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~   75 (158)
                      .+||+||+|++  |+++|++++.+.  ....+.++...+|+|+|++++ |++ +++|+|+||||||||+|||+||+|+..
T Consensus        58 ~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~~~~~p~~-~~~v~f~~SGsEAve~AlKlAr~~~~~  136 (443)
T PRK08297         58 ALGMNHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFARVLGDPE-LPHLFFVDGGALAVENALKVAFDWKSR  136 (443)
T ss_pred             cCCCCChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHHhhcCCCC-CCEEEEeCchHHHHHHHHHHHHHHhhc
Confidence            48999999999  999999987642  222577899999999999998 656 899999999999999999999987532


Q ss_pred             ---cCCccccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           76 ---DHDVLVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        76 ---~~g~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                         .+|+..+ .|         .+||+          |+++|||+|.+++|.++
T Consensus       137 ~~~~~g~~~~-~r---------~kii~----------~~~~yHG~t~~als~~~  170 (443)
T PRK08297        137 KNEARGIDPA-LG---------TKVLH----------LRGAFHGRSGYTLSLTN  170 (443)
T ss_pred             cccccCCCCC-CC---------ceEEE----------ECCCcCCcchhhhhhcC
Confidence               1232000 12         38999          99999999999888765

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.86  E-value=1e-21  Score=171.53  Aligned_cols=97  Identities=15%  Similarity=0.062  Sum_probs=83.8

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.....+.+++.++|||+|++++|..++++++|+||||||||+|||+||++    +|+ 
T Consensus        53 ~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~----tgr-  127 (421)
T PRK06777         53 NTGHRHPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAY----TGR-  127 (421)
T ss_pred             ccCCCCHHHHHHHHHHHhhcccccccccCChHHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHh----hCC-
Confidence            489999999999999999988765444678999999999999988422689999999999999999999986    344 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                                    .+||+          |+++|||+|.+++|.++
T Consensus       128 --------------~~ii~----------~~~~yHG~t~~~~s~t~  149 (421)
T PRK06777        128 --------------PGVIA----------FGGAFHGRTLLTMALTG  149 (421)
T ss_pred             --------------CeEEE----------EcCCcCCccHHHHhhcC
Confidence                          27999          99999999999887655

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.86  E-value=1e-21  Score=172.86  Aligned_cols=97  Identities=20%  Similarity=0.088  Sum_probs=84.1

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.....+.++...+|||+|+++.|....++|+|+||||||||+|||+||+++    |+ 
T Consensus        55 ~lGH~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~t----gr-  129 (445)
T PRK08593         55 NVGHAPPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYT----GR-  129 (445)
T ss_pred             cCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhh----CC-
Confidence            3899999999999999999887654346799999999999999986523699999999999999999999873    43 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                                    .+||+          ++++|||.|.+++|.++
T Consensus       130 --------------~~ii~----------~~~~YHG~t~~als~s~  151 (445)
T PRK08593        130 --------------PYIIS----------FTNAYHGSTYGSLSMSG  151 (445)
T ss_pred             --------------CeEEE----------ECCCcCCCcHHHHhhcC
Confidence                          27999          99999999999887665

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.86  E-value=1.4e-21  Score=170.63  Aligned_cols=97  Identities=18%  Similarity=0.103  Sum_probs=83.9

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.....+.+++.++|||+|+++.|..++++++|++|||||||+|||+||++    +|+ 
T Consensus        53 ~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~----tgr-  127 (421)
T PRK09792         53 NTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAH----TGR-  127 (421)
T ss_pred             cCCCCCHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHh----cCC-
Confidence            489999999999999999988765445689999999999999987432579999999999999999999986    344 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                                    .+||+          +.++|||.|.+++|.++
T Consensus       128 --------------~~ii~----------~~~~yHG~t~~~~s~~~  149 (421)
T PRK09792        128 --------------PGVIA----------FSGGFHGRTYMTMALTG  149 (421)
T ss_pred             --------------CeEEE----------ECCCcCCccHHHHhhcC
Confidence                          27999          99999999999888755

>PRK07678 aminotransferase; Validated

Probab=99.86  E-value=1.6e-21  Score=171.96  Aligned_cols=101  Identities=23%  Similarity=0.184  Sum_probs=85.0

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+... .+.+++..+|||+|++++|.  .++|+|+||||||||+|||+||+++.. +|+ 
T Consensus        60 ~lGh~~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~lae~l~~~~~~--~~~v~f~~sGseA~e~AlklAr~~t~~-~g~-  134 (451)
T PRK07678         60 NVGYGRKELAEAAYEQLKTLSYFPL-TQSHEPAIKLAEKLNEWLGG--EYVIFFSNSGSEANETAFKIARQYHAQ-KGE-  134 (451)
T ss_pred             cCCCCCHHHHHHHHHHHHhcCcccc-ccCCHHHHHHHHHHHHhCCC--CCEEEEeCCcHHHHHHHHHHHHHHHHh-cCC-
Confidence            4799999999999999999887653 56889999999999999874  469999999999999999999987532 343 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                       + .|         .+||+          |+++|||+|.+++|..+.
T Consensus       135 -~-~r---------~~ii~----------~~~~yHG~t~~als~~~~  160 (451)
T PRK07678        135 -P-HR---------YKFIS----------RYRAYHGNSMGALAATGQ  160 (451)
T ss_pred             -C-CC---------cEEEE----------ECCCcCCccHHHhhcCCC
Confidence             1 22         37999          999999999998887654

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=99.86  E-value=3e-22  Score=170.46  Aligned_cols=102  Identities=27%  Similarity=0.241  Sum_probs=83.6

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      +|||+||+|.+|+++|++++.+.+...+.++...+|+++|.+.+|++ +++|+|++|||||||+|||+||+++.. ++. 
T Consensus        29 ~lGh~~p~i~~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~-~~~v~f~~sGseAve~Alkla~~~~~~-~~~-  105 (339)
T PF00202_consen   29 NLGHNHPEIAEAIAEQANKLNYVSFSGFTHPEAAELAEKLAELFPGG-LDRVFFANSGSEAVEAALKLARQYHNK-RAY-  105 (339)
T ss_dssp             TT-BT-HHHHHHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHHHSSTT-EEEEEEESSHHHHHHHHHHHHHHHHHH-THH-
T ss_pred             ecCCCccccchhHHHHhhhcccccccceeccchhhhhhhhhhccccc-cceeeeccCchHHHHHHHHHhhccccc-ccc-
Confidence            58999999999999999999887655788999999999999999876 899999999999999999999954322 121 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                       + .|         .+||+          |+++|||+|++++|..+
T Consensus       106 -~-~r---------~~il~----------~~~~yHG~t~~~~s~~~  130 (339)
T PF00202_consen  106 -T-GR---------RKILA----------FEGSYHGRTLGALSLTG  130 (339)
T ss_dssp             -H-TT---------TEEEE----------ETTTB-TSSHHHHHHSS
T ss_pred             -c-CC---------ceEEE----------eeeeeeccCcccccccC
Confidence             1 22         38999          99999999999877543

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.86  E-value=1.5e-21  Score=170.25  Aligned_cols=102  Identities=17%  Similarity=0.118  Sum_probs=84.6

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+... .+.+++..+|+|+|+++.|.  .++|+|++|||||||+|||+||+++. .+|+ 
T Consensus        53 ~lGh~~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~la~~L~~~~~~--~~~v~f~~sGseA~e~AlklAr~~~~-~~g~-  127 (408)
T PRK04612         53 GLGHNDPDLVAALTEQAGKLWHTSN-VFYSAPPLKLAEELVTASRF--AEKVFLCNSGTEANEAAIKLVRKWAS-SQGR-  127 (408)
T ss_pred             cCCCCCHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHHHhhCCC--CCEEEEcCchHHHHHHHHHHHHHHHH-hhCC-
Confidence            4899999999999999999877642 46789999999999999873  57999999999999999999998753 2343 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                       +..|         .+||+          |+++|||+|.+++|..+.
T Consensus       128 -~~~r---------~~ii~----------~~~~yHG~t~~~~s~~~~  154 (408)
T PRK04612        128 -PADK---------RVIVT----------FRGSFHGRTLAAVTATAQ  154 (408)
T ss_pred             -CCCC---------cEEEE----------ECCCcCCccHHHHHhcCC
Confidence             1122         37999          999999999998876653

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.85  E-value=3.7e-21  Score=167.97  Aligned_cols=96  Identities=24%  Similarity=0.138  Sum_probs=83.4

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.....+.++...+|+|+|++++|+. +++|+|+||||||||+|||+||+++    |+ 
T Consensus        56 ~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~~~~-~~~v~f~~SGseA~e~AlklAr~~t----gr-  129 (433)
T PRK08117         56 NVGHRHPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEITPGG-LDCFFFSNSGAEAIEGALKLAKHVT----KR-  129 (433)
T ss_pred             cCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCcHHHHHHHHHHHHHHhc----CC-
Confidence            48999999999999999998776433467899999999999999866 8899999999999999999999873    43 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                                    .+||+          +.++|||+|.+++|..+
T Consensus       130 --------------~~ii~----------~~~~yHG~t~~~~s~~~  151 (433)
T PRK08117        130 --------------PYIIS----------FTGCFHGRTLGALSVTT  151 (433)
T ss_pred             --------------CeEEE----------ECCCcCCcCHHHHhhcC
Confidence                          27999          99999999999876544

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.85  E-value=3.5e-21  Score=172.33  Aligned_cols=119  Identities=16%  Similarity=0.087  Sum_probs=90.4

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCC-CCCCChHHHHHHHHHHhhcC-CCCCCcEEEeCChHHHHHHHHHHHHhcccccCC
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMF-PENVYEPALECAELLLQGVG-KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHD   78 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~-~~~~~~~~~~LAe~L~~~~P-~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g   78 (158)
                      .+||+||+|++|+++|++++.+.+. ..+.+++.++|||+|+++++ .+ +++|+|+||||||||+|||+||+|+. .+|
T Consensus       102 ~lGh~hp~v~~Av~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~-~~~v~f~~SGsEA~e~AlKlAr~~~~-~~g  179 (504)
T PLN02760        102 ALGGSEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLEMFTARK-MGKVFFTNSGSEANDTQVKLVWYYNN-ALG  179 (504)
T ss_pred             ccCCCCHHHHHHHHHHHhhccceecccccCcHHHHHHHHHHHhhcCCCC-CCEEEEeCChHHHHHHHHHHHHHHHH-hcC
Confidence            4899999999999999999876532 14578999999999999854 44 78999999999999999999998642 234


Q ss_pred             ccccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC--cccccccccccccccc
Q 031493           79 VLVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT--LEEAFFWTLLQFSCTT  143 (158)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~--~~~~~~~~~~~~~~~~  143 (158)
                      +  + .|         .+||+          +.++|||+|++++|..+.  +...|.++...+...+
T Consensus       180 ~--~-~r---------~~iI~----------~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~  224 (504)
T PLN02760        180 R--P-NK---------KKFIA----------RSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTD  224 (504)
T ss_pred             C--C-CC---------cEEEE----------ECCCccCChHhhhhccCChhhccCCCCCCCCcEEeC
Confidence            3  1 22         37999          999999999998876653  3334444433333333

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.85  E-value=3.3e-21  Score=168.86  Aligned_cols=106  Identities=16%  Similarity=0.082  Sum_probs=84.5

Q ss_pred             CCCCCcHHHH--HHHHHHHHhcCcc--CCCCCCChHHHHHHHHHHhhc-CCCCCCcEEEeCChHHHHHHHHHHHHhcccc
Q 031493            1 MFRWFQIELA--RDMGYTAARFGHV--MFPENVYEPALECAELLLQGV-GKGWASRAYFSDNGSTAIEIALKMAFRKFSF   75 (158)
Q Consensus         1 ~~Gh~hP~Iv--~Av~eQl~~l~~~--~~~~~~~~~~~~LAe~L~~~~-P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~   75 (158)
                      .+||+||+|+  +|+++|++++.+.  ....+.+++..+++++|++++ |++ +++|+|+||||||||+|||+||+|+.+
T Consensus        51 ~lGh~~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~v~f~~sGsEAve~AlklAr~~t~~  129 (431)
T TIGR03251        51 ALGMNHPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFVDTFARVLGDPA-LPHLFFIEGGALAVENALKTAFDWKSR  129 (431)
T ss_pred             CCCCCChhhhHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHhcCCCC-cCEEEEeCCcHHHHHHHHHHHHHHhhc
Confidence            4899999999  9999999987542  223567888999999999987 555 899999999999999999999997532


Q ss_pred             ---cCCccccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           76 ---DHDVLVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        76 ---~~g~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                         .+|+..+ .|         .+||+          |.++|||+|.+++|.++.
T Consensus       130 ~~~~~g~~~~-~~---------~~ii~----------~~~~yHG~t~~als~~~~  164 (431)
T TIGR03251       130 HNQARGIPAA-LG---------TQVLH----------LRQAFHGRSGYTLSLTNT  164 (431)
T ss_pred             chhhcCCCCC-CC---------ceEEE----------ECCccCCcchhhhhccCC
Confidence               1343100 12         37999          999999999998887663

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.85  E-value=3.7e-21  Score=168.05  Aligned_cols=96  Identities=19%  Similarity=0.157  Sum_probs=79.2

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhc--CCCCCC-cEEE-eCChHHHHHHHHHHHHhccccc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGV--GKGWAS-RAYF-SDNGSTAIEIALKMAFRKFSFD   76 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~--P~~~l~-~v~f-~~SGSEA~E~AlKlAR~~~~~~   76 (158)
                      .+||+||+|++|+++|++++.+.+...+.++...+|||+|++++  |.+ ++ +++| +||||||||+|||+||++    
T Consensus        52 ~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~-~~~~~~f~~~sGseA~e~AlklAr~~----  126 (425)
T PRK09264         52 NYGHNNPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEETILKPRG-LDYKVQFTGPTGTNAVEAALKLARKV----  126 (425)
T ss_pred             cCCCCCHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHhhcCCcC-CCceEEEeCCCHHHHHHHHHHHHHHh----
Confidence            48999999999999999987665433467889999999999974  433 44 6766 589999999999999987    


Q ss_pred             CCccccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           77 HDVLVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        77 ~g~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                      +|+               .+||+          ++++|||+|.+++|..+
T Consensus       127 tgr---------------~~ii~----------~~~~yHG~t~~~ls~~~  151 (425)
T PRK09264        127 TGR---------------TNIVA----------FTNGFHGMTLGSLAVTG  151 (425)
T ss_pred             cCC---------------CeEEE----------ECCccCCccHHHHHhcC
Confidence            343               27999          99999999999888755

>PLN00144 acetylornithine transaminase

Probab=99.85  E-value=3.5e-21  Score=166.18  Aligned_cols=107  Identities=19%  Similarity=0.174  Sum_probs=84.2

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+... .+.+++..+|||+|++..|   .++|+|++|||||||+|||+||+++.+ +++ 
T Consensus        28 ~lGh~~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~la~~l~~~~~---~~~v~f~~sGseA~e~AlklAr~~~~~-~~~-  101 (382)
T PLN00144         28 ALGHGDPDWVKAVAEQAGTLAHVSN-VYHTIPQVELAKRLVASSF---ADRVFFCNSGTEANEAAIKFARKYQRV-RAP-  101 (382)
T ss_pred             cCCCCCHHHHHHHHHHHHhcCCccc-cccCHHHHHHHHHHHhcCC---CCeEEEeCCcHHHHHHHHHHHHHHHhc-cCC-
Confidence            4899999999999999999887653 4568999999999999865   679999999999999999999987543 222 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                       + .+  ..+++...+||+          ++++|||+|.+++|..+.
T Consensus       102 -~-~~--~~~~~~r~~ii~----------~~~~yHG~t~~~~s~~~~  134 (382)
T PLN00144        102 -D-KK--DPAASSATEFVS----------FSNSFHGRTLGALALTSK  134 (382)
T ss_pred             -C-Cc--cccccccceEEE----------ECCCcccccHHHHhcCCC
Confidence             0 10  011111248999          999999999998876653

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.85  E-value=5.2e-21  Score=169.20  Aligned_cols=96  Identities=23%  Similarity=0.232  Sum_probs=84.1

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.. ..+.++...+|+|+|++++|.+ +++|+|++|||||||+|+|+||++    +|+ 
T Consensus        84 ~lGh~~p~v~~Ai~~ql~~~~~~~-~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~sGseAve~AlklAr~~----tgr-  156 (459)
T PRK06082         84 QLGYGHPHVIEKVKEQMAKLPFSP-RRFTNETAIECAEKLTEIAGGE-LNRVLFAPGGTSAIGMALKLARHI----TGN-  156 (459)
T ss_pred             ccCCCCHHHHHHHHHHHHhCCCcc-CccCCHHHHHHHHHHHHhCCCC-CCEEEECCCcHHHHHHHHHHHHHh----cCC-
Confidence            389999999999999999987654 3578999999999999999866 789999999999999999999987    343 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                                    .+||+          |.++|||+|.++++..+.
T Consensus       157 --------------~~ii~----------~~~~yHG~t~~a~s~~~~  179 (459)
T PRK06082        157 --------------FKVVS----------LWDSFHGASLDAISVGGE  179 (459)
T ss_pred             --------------CEEEE----------EeCCCcCccHHHHhhcCC
Confidence                          27999          999999999998876653

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.84  E-value=9.7e-21  Score=166.40  Aligned_cols=97  Identities=14%  Similarity=0.020  Sum_probs=81.0

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCC--CCCcEEEeCChHHHHHHHHHHHHhcccccCC
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG--WASRAYFSDNGSTAIEIALKMAFRKFSFDHD   78 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~--~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g   78 (158)
                      .+||+||+|++|+++|++++.+.+...+.++..++|||+|++++|..  ...++||+||||||||+|||+||++    +|
T Consensus        52 ~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~----tg  127 (442)
T TIGR00709        52 ALGHNHPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTY----TG  127 (442)
T ss_pred             cCCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHh----cC
Confidence            48999999999999999987765433477899999999999999842  1245677899999999999999987    34


Q ss_pred             ccccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           79 VLVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                      +               .+||+          +.++|||.|.++++..+
T Consensus       128 r---------------~~Ii~----------~~~~yHG~t~~~~s~t~  150 (442)
T TIGR00709       128 R---------------TNVIS----------FSGGFHGMTIGALAVTG  150 (442)
T ss_pred             C---------------CeEEE----------EcCCcCCchHHHHhhcC
Confidence            3               27999          99999999999887765

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.84  E-value=8.4e-21  Score=165.34  Aligned_cols=96  Identities=21%  Similarity=0.180  Sum_probs=78.4

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhc--CCCCC-CcEEE-eCChHHHHHHHHHHHHhccccc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGV--GKGWA-SRAYF-SDNGSTAIEIALKMAFRKFSFD   76 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~--P~~~l-~~v~f-~~SGSEA~E~AlKlAR~~~~~~   76 (158)
                      .+||+||+|++|+++|++++.+.+...+.++...+|||+|++++  |.+ + ++++| +||||||||+|||+||++    
T Consensus        48 ~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~-~~~~~~f~~~sGseA~e~AlklAr~~----  122 (412)
T TIGR02407        48 NYGHNNPKLKQALIDYLADDGIIHSLDMATEAKREFLETFNEIILKPRG-LDYKVQFPGPTGTNAVESALKLARKV----  122 (412)
T ss_pred             cCCCCCHHHHHHHHHHHhhccceeccccCcHHHHHHHHHHHHhccCccC-CCceEEEeCCCchHHHHHHHHHHhhh----
Confidence            48999999999999999987665433456899999999999975  433 3 35655 699999999999999986    


Q ss_pred             CCccccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           77 HDVLVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        77 ~g~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                      +|+               .+||+          |+++|||+|.+++|..+
T Consensus       123 tgr---------------~~ii~----------~~~~yHG~t~~als~~~  147 (412)
T TIGR02407       123 TGR---------------SNVVS----------FTNAFHGMTLGSLSVTG  147 (412)
T ss_pred             cCC---------------CeEEE----------ECCCcCCchHHHHHhcC
Confidence            343               27999          99999999999887655

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=99.84  E-value=6.6e-21  Score=169.21  Aligned_cols=113  Identities=20%  Similarity=0.185  Sum_probs=80.8

Q ss_pred             CCCCCcHHHHHHHHHH--HHhcCccCCCCCCChHHHHHHHHHHh----hcCCCCCCcEEEeCChHHHHHHHHHHHHhccc
Q 031493            1 MFRWFQIELARDMGYT--AARFGHVMFPENVYEPALECAELLLQ----GVGKGWASRAYFSDNGSTAIEIALKMAFRKFS   74 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQ--l~~l~~~~~~~~~~~~~~~LAe~L~~----~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~   74 (158)
                      .+||+||+|++|+++|  .+.+.+.  ..+.+++..+||++|.+    ++|.+ +++|+|+||||||||+|||+||+|+.
T Consensus        71 ~lGh~~p~i~~Ai~~q~~~~~l~~~--~~~~~~~~~~la~~l~~~l~~~~p~~-~~~v~f~~SGsEAvE~AlKlAr~~~~  147 (464)
T TIGR00699        71 PIGYNNPALLKAAQSPEMATTLINR--PALGNFPSKDWAKILKEGILKVAPKG-QDQVWTGMSGSDANELAFKAAFMYYR  147 (464)
T ss_pred             cCCCCCHHHHHHHHHHHHHHhhccc--ccCCcHHHHHHHHHHHHhHHhhCCCC-cCEEEEeCCcHHHHHHHHHHHHHHHH
Confidence            4899999999999996  4445443  24678888999999854    67866 89999999999999999999998753


Q ss_pred             ccCCcccc--c-cCC------CcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           75 FDHDVLVD--F-LGK------DTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        75 ~~~g~~~~--~-~~~------~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                      . +++..+  + .|+      ...++.+..+||+          |+++|||+|.+++|..+.
T Consensus       148 ~-~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~----------~~~syHG~t~~als~t~~  198 (464)
T TIGR00699       148 S-KQRGYQADFSEEENESCMDNQAPGSPDLSILS----------FKGAFHGRLFGSLSTTRS  198 (464)
T ss_pred             h-cCCCcccccccccccccccccccCCcCCEEEE----------ECCCcCCccHHHHHhcCC
Confidence            2 111000  0 000      0011112248999          999999999998887653

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.84  E-value=1.1e-20  Score=167.52  Aligned_cols=96  Identities=16%  Similarity=0.087  Sum_probs=79.3

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCC---CcEEEe-CChHHHHHHHHHHHHhccccc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWA---SRAYFS-DNGSTAIEIALKMAFRKFSFD   76 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l---~~v~f~-~SGSEA~E~AlKlAR~~~~~~   76 (158)
                      .+||+||+|++|+++|+++..+.....+.++...+||++|++.+|.+ +   ++++|+ ||||||||+|||+||++    
T Consensus        76 ~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p~~-~~~~~~v~f~~~SGSEAve~AlklAr~~----  150 (464)
T PRK06938         76 ALGHNHPVVIEAIQQVLADELPLHTLDLTTPVKDQFVQDLFASLPEA-FAREAKIQFCGPTGTDAVEAALKLVKTA----  150 (464)
T ss_pred             ccCCCCHHHHHHHHHHHHhhhcccccccCCHHHHHHHHHHHHhCccc-ccccceEEEeCCCcHHHHHHHHHHHHHh----
Confidence            48999999999999999864433222578999999999999999865 4   377665 89999999999999986    


Q ss_pred             CCccccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           77 HDVLVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        77 ~g~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                      +|+               .+||+          +.++|||+|.+++|.++
T Consensus       151 tgr---------------~~ii~----------~~~~yHG~t~~als~t~  175 (464)
T PRK06938        151 TGR---------------STVLS----------FQGGYHGMSQGALSLMG  175 (464)
T ss_pred             hCC---------------CeEEE----------ECCccCCccHHHHhhcC
Confidence            343               27999          99999999999888655

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.84  E-value=1.2e-20  Score=165.74  Aligned_cols=97  Identities=20%  Similarity=0.111  Sum_probs=82.6

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+..+..+.++...+|||+|++..|....++++|++|||||||+|+|+||+++    |+ 
T Consensus        69 ~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~t----gr-  143 (443)
T PRK06058         69 SVGNSAPRVVEAVREQVARFTHTCFMVTPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSYT----GR-  143 (443)
T ss_pred             ccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhh----CC-
Confidence            4899999999999999999876544345788999999999999985424799999999999999999999873    43 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                                    .+||+          +.++|||.|.+++|.++
T Consensus       144 --------------~~ii~----------~~~~yHG~t~~al~~~~  165 (443)
T PRK06058        144 --------------QAVVV----------FDHAYHGRTNLTMALTA  165 (443)
T ss_pred             --------------CeEEE----------ECCCcCcChHHHHhhcC
Confidence                          27999          99999999999887654

>PRK12403 putative aminotransferase; Provisional

Probab=99.84  E-value=1.5e-20  Score=166.22  Aligned_cols=103  Identities=16%  Similarity=0.071  Sum_probs=85.4

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCC-CCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFP-ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDV   79 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~-~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~   79 (158)
                      .+||+||+|++|+++|++++.+.+.. ...++...+|+|+|++.+|.. +++|+|+||||||||+|||+||+|+. .+|+
T Consensus        67 ~lGh~hp~v~~A~~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~-~~~v~f~~SGseA~e~AiklAr~~~~-~~g~  144 (460)
T PRK12403         67 NLGYGRKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELLFSLLPGH-YSHAIYTNSGSEANEVLIRTVRRYWQ-VLGK  144 (460)
T ss_pred             cCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHHHHHHH-hhCC
Confidence            37999999999999999998765421 346889999999999999876 78999999999999999999998742 2343


Q ss_pred             cccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           80 LVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        80 ~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                        + .|         .+||+          +.++|||+|++++|.++.
T Consensus       145 --~-~r---------~~ii~----------~~~~yHG~t~~~~s~s~~  170 (460)
T PRK12403        145 --P-QK---------KIMIG----------RWNGYHGSTLAATALGGM  170 (460)
T ss_pred             --C-CC---------cEEEE----------ECCCcCcccHhhhhcCCC
Confidence              1 22         37889          999999999998887663

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.84  E-value=9.5e-21  Score=165.74  Aligned_cols=92  Identities=14%  Similarity=0.118  Sum_probs=80.9

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.   .+.++...+|||+|++.+| + +++|+|+||||||||+|||+||++    +|+ 
T Consensus        66 ~lGh~~p~v~~ai~~q~~~~~~~---~~~~~~~~~la~~l~~~~p-~-~~~v~f~~sGseA~e~AlklAr~~----tgr-  135 (428)
T PRK12389         66 ITGHAHPHITKAITEAAENGVLY---GTPTELEIEFAKMLKEAIP-S-LEKVRFVNSGTEAVMTTIRVARAY----TGR-  135 (428)
T ss_pred             ccCCCCHHHHHHHHHHHHhCCcc---CCCCHHHHHHHHHHHHhCC-C-CcEEEEeCCHHHHHHHHHHHHHHh----hCC-
Confidence            48999999999999999987542   4678999999999999988 4 789999999999999999999987    344 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                                    .+||+          |+++|||+|.+++|..+
T Consensus       136 --------------~~ii~----------~~~~yHG~t~~~~~~~~  157 (428)
T PRK12389        136 --------------TKIIK----------FAGCYHGHSDLVLVAAG  157 (428)
T ss_pred             --------------CEEEE----------ECCCcCCChHHHHHhcC
Confidence                          27999          99999999999887654

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.83  E-value=1.8e-20  Score=165.74  Aligned_cols=98  Identities=13%  Similarity=0.043  Sum_probs=79.3

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCC--CCcEEEeCChHHHHHHHHHHHHhcccccCC
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGW--ASRAYFSDNGSTAIEIALKMAFRKFSFDHD   78 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~--l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g   78 (158)
                      .+||+||+|++|+++|+++..+.....+.++...+|||+|++.+|...  ...+||+||||||||+|||+||++    +|
T Consensus        71 ~lGH~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~----tg  146 (459)
T PRK06931         71 ALGHNHPDVLQSIQDVLTSGLPLHTLDLTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTY----TG  146 (459)
T ss_pred             cCCCCCHHHHHHHHHHHhhhccccccccCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHh----cC
Confidence            489999999999999998744332234678999999999999998531  134677899999999999999987    34


Q ss_pred             ccccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           79 VLVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                      +               .+||+          |+++|||+|.+++|.++.
T Consensus       147 r---------------~~Ii~----------~~~~yHG~t~~als~t~~  170 (459)
T PRK06931        147 R---------------SNVIS----------FSGGYHGMTHGALAVTGN  170 (459)
T ss_pred             C---------------CeEEE----------ECCCcCCccHHHHhhcCC
Confidence            4               27999          999999999998876553

>PRK06148 hypothetical protein; Provisional

Probab=99.83  E-value=1.8e-20  Score=179.04  Aligned_cols=94  Identities=18%  Similarity=0.172  Sum_probs=82.9

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.  ..+.++...+|||+|++++|.+ +++|+|+||||||||+|||+||++    +|+ 
T Consensus       635 ~lGH~hp~v~~Ai~~q~~~l~~~--~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~nSGsEA~e~AlklAr~~----tGr-  706 (1013)
T PRK06148        635 HVGHAHPRVVAAAARQAARLNTN--TRYLHDAIVAYAERLTATLPDG-LTVAFFVNSGSEANSLALRLARAH----TGQ-  706 (1013)
T ss_pred             hcCCCCHHHHHHHHHHHhhcCCc--CCcCCHHHHHHHHHHHHhCCCC-cCEEEEeCCcHHHHHHHHHHHHHh----cCC-
Confidence            48999999999999999987543  2578999999999999999976 899999999999999999999987    354 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                                    .+||+          +.++|||+|.+++|.++
T Consensus       707 --------------~~ii~----------~~~~YHG~t~~a~s~s~  728 (1013)
T PRK06148        707 --------------RDAIV----------LDHAYHGTTTELIDLSP  728 (1013)
T ss_pred             --------------CeEEE----------EcCCccCCCcchhhcCc
Confidence                          27999          99999999999888755

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.82  E-value=5.3e-20  Score=161.93  Aligned_cols=93  Identities=16%  Similarity=0.025  Sum_probs=80.0

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      +|||+||+|++|+++|++++..   ..+.++...+|||+|++.+|.. .++|+|++|||||||+|||+||++    +|+ 
T Consensus        66 ~lGh~~p~v~~ai~~q~~~~~~---~~~~~~~~~~la~~L~~~~~~~-~~~v~f~~SGsEA~e~AiklAr~~----tgr-  136 (433)
T PRK00615         66 IHGHSHPKICDAIQQGAERGTS---YGLTSEQEILFAEELFSYLGLE-DHKIRFVSSGTEATMTAVRLARGI----TGR-  136 (433)
T ss_pred             ccCCCCHHHHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHHhCCCC-cCEEEEeCchHHHHHHHHHHHHHh----hCC-
Confidence            4899999999999999998753   2567899999999999999865 689999999999999999999987    344 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcC---cccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLT---QGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T---~g~~s~~~  126 (158)
                                    .+||+          |+++|||.|   +++++.++
T Consensus       137 --------------~~ii~----------~~~~yHG~td~~~~~~~~~~  161 (433)
T PRK00615        137 --------------SIIIK----------FLGCYHGHADTLLQGISFSE  161 (433)
T ss_pred             --------------CEEEE----------EcCccCCCCcccCcccccCC
Confidence                          27999          999999988   67666554

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.82  E-value=8.2e-20  Score=157.56  Aligned_cols=93  Identities=20%  Similarity=0.078  Sum_probs=81.9

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+... .+.+++..+|+++|++..+   +++++|+||||||||+|+|+||.+    +|+ 
T Consensus        37 ~lGh~~p~v~~ai~~ql~~~~~~~~-~~~~~~~~~la~~l~~~~~---~~~v~~~~SGseA~e~Alklar~~----~gr-  107 (364)
T PRK04013         37 VLGHNHPEWVEEMSEQLEKLVVAGP-MFEHEEKEEMLEELSKWVN---YEYVYMGNSGTEAVEAALKFARLY----TGR-  107 (364)
T ss_pred             cCCCCCHHHHHHHHHHHHhcCCccC-CcCCHHHHHHHHHHHhhcC---CCEEEEeCchHHHHHHHHHHHHHH----hCC-
Confidence            4899999999999999999887653 6789999999999999874   689999999999999999999986    343 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                                    .+||+          +.++|||+|.++++..+
T Consensus       108 --------------~~Ii~----------~~~syHG~t~~~ls~~~  129 (364)
T PRK04013        108 --------------KEIIA----------MTNAFHGRTMGALSATW  129 (364)
T ss_pred             --------------CEEEE----------ECCccccCchhhccCCC
Confidence                          27999          99999999999888655

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.81  E-value=8.9e-20  Score=159.78  Aligned_cols=102  Identities=25%  Similarity=0.286  Sum_probs=86.2

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+..+..+.++...+|+++|++++|.+ +++|+|++|||||||+|+|+||.++.. +|+ 
T Consensus        58 ~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~f~~sGseA~e~AlklAr~~~~~-~~~-  134 (427)
T TIGR00508        58 IHGYNHPRLNAAAQKQIDKMSHVMFGGFTHKPAIELCQKLVKMTPNA-LDCVFLADSGSVAVEVALKMALQYWQA-KGE-  134 (427)
T ss_pred             cCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCC-CCEEEEeCCcHHHHHHHHHHHHHHHHh-hCC-
Confidence            47999999999999999998876544568899999999999999877 899999999999999999999987532 232 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                       + .|         .+||+          |.++|||.|.++++..+
T Consensus       135 -~-~r---------~~il~----------~~~~yHG~t~~~~s~~~  159 (427)
T TIGR00508       135 -K-NR---------QKFLT----------IRSGYHGDTFGAMSVCD  159 (427)
T ss_pred             -C-Cc---------cEEEE----------EcCCcCCccHhhhcccC
Confidence             1 12         37999          99999999999887655

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PLN02624 ornithine-delta-aminotransferase

Probab=99.80  E-value=3.2e-19  Score=158.18  Aligned_cols=102  Identities=14%  Similarity=-0.036  Sum_probs=84.1

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.+. .+.+++..+|+|+|+++.|   +++++|+||||||||+|||+||+++...+|. 
T Consensus        88 ~~Gh~~p~v~~ai~~ql~~~~~~~~-~~~~~~~~~la~~L~~~~~---~~~~~f~~SGseA~e~AlklAr~~~~~~~g~-  162 (474)
T PLN02624         88 NQGHCHPKIIKALTEQAEKLTLSSR-AFYNDKFPEFAEYLTSMFG---YDMVLPMNTGAEGVETAIKLARKWGYEKKGI-  162 (474)
T ss_pred             cCCCCCHHHHHHHHHHHHhcCCccc-ccCCHHHHHHHHHHHhhcC---CCeEEEeCChHHHHHHHHHHHHHHHHhhcCC-
Confidence            3799999999999999999887653 5788999999999999875   6799999999999999999999874432332 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                       +..+         .+||+          +.++|||+|.+++|..+.
T Consensus       163 -~~~~---------~~ii~----------~~~~yHG~t~~~~s~~~~  189 (474)
T PLN02624        163 -PKNE---------AIIVS----------CCGCFHGRTLAAISMSCD  189 (474)
T ss_pred             -CCCC---------cEEEE----------ECCCcCCCCHHHhhcCCC
Confidence             1012         37999          999999999998876553

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.79  E-value=3.6e-19  Score=154.16  Aligned_cols=100  Identities=24%  Similarity=0.196  Sum_probs=82.5

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .|||+||+|++|+++|++++.+.. ..+.+++..+|+++|+++.+   .++|+|++|||||||+|+|+||+++.+ ++. 
T Consensus        52 ~lGh~~p~v~~A~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~~---~~~v~~~~sGseA~e~Alk~ar~~~~~-~~~-  125 (406)
T PRK12381         52 ALGHAHPALREALNEQASKFWHTG-NGYTNEPVLRLAKKLIDATF---ADRVFFCNSGAEANEAALKLARKYAHD-RYG-  125 (406)
T ss_pred             cCCCCCHHHHHHHHHHHhhccccc-CccCCHHHHHHHHHHHhhCC---CCeEEEcCCcHHHHHHHHHHHHHHHhh-cCC-
Confidence            489999999999999999876654 35678889999999999875   579999999999999999999987532 222 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                       + .|         .+||+          +.++|||+|.++++.++.
T Consensus       126 -~-~r---------~~ii~----------~~~~yHG~t~~~~~~~~~  151 (406)
T PRK12381        126 -S-HK---------SGIVA----------FKNAFHGRTLFTVSAGGQ  151 (406)
T ss_pred             -C-CC---------CeEEE----------ECCCcCCcchhHHhhcCC
Confidence             1 22         37999          999999999998776553

>PRK07046 aminotransferase; Validated

Probab=99.79  E-value=5.9e-19  Score=155.98  Aligned_cols=87  Identities=20%  Similarity=0.042  Sum_probs=75.6

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      ++||+||+|++|+++|+++..+.   .+.++..++|||+|+++.|   +++|+|+||||||||+|+|+||.+    +|+ 
T Consensus        88 ~lGh~~p~i~~Av~~q~~~~~~~---~~~~~~~~~lAe~l~~~~~---~~~v~F~nSGtEA~e~AlrlAR~~----TGr-  156 (453)
T PRK07046         88 MFGHSPAPVARALAEQARRGLTT---MLPSEDAAWVGEELARRFG---LPYWQVATTATDANRFVLRWARAV----TGR-  156 (453)
T ss_pred             ccCCCCHHHHHHHHHHHHhCCCC---CCCCHHHHHHHHHHHHHhC---CCEEEEECCHHHHHHHHHHHHHHh----hCC-
Confidence            58999999999999999987542   4678999999999999875   789999999999999999999987    354 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccc
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFC  122 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~  122 (158)
                                    .+||+          |.++|||.+.+++
T Consensus       157 --------------~~ii~----------~~g~YHG~~d~~l  174 (453)
T PRK07046        157 --------------PKILV----------FNGCYHGTVDDVF  174 (453)
T ss_pred             --------------CEEEE----------ECCCCCCCcHHhH
Confidence                          27999          9999999975543

>PRK06149 hypothetical protein; Provisional

Probab=99.79  E-value=3e-19  Score=170.00  Aligned_cols=94  Identities=15%  Similarity=0.085  Sum_probs=81.8

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.+  .+.++...+|+|+|++++|.+ +++|+|+||||||||+|||+||+++    |+ 
T Consensus       596 ~lGh~hp~v~~Ai~~q~~~l~~~~--~~~~~~~~elae~L~~~~p~~-~~~v~f~~SGsEA~e~AlklAr~~t----gr-  667 (972)
T PRK06149        596 VLGHGHPRLAAAAARQWSLLNTNS--RFHYAAVAEFSERLAALAPDG-LDTVFLVNSGSEANDLAIRLAWAAS----GR-  667 (972)
T ss_pred             ccCCCCHHHHHHHHHHHHhccccc--cccCHHHHHHHHHHHHhCCCC-cCEEEEeCCchHHHHHHHHHHHHhc----CC-
Confidence            389999999999999999886542  467889999999999999877 8999999999999999999999873    43 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                                    .+||+          +.++|||+|+|++|..+
T Consensus       668 --------------~~ii~----------~~~~yHG~t~ga~~~s~  689 (972)
T PRK06149        668 --------------RDVVS----------VLEAYHGWTVATDAVST  689 (972)
T ss_pred             --------------CeEEE----------EeCCCCCcChhHhhhcC
Confidence                          27999          99999999999766543

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.78  E-value=7.8e-19  Score=151.18  Aligned_cols=101  Identities=14%  Similarity=-0.040  Sum_probs=82.1

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.+. .+.+++..+|+|+|+++.|   .++++|++|||||||+|||+||+++...+|. 
T Consensus        53 ~lGh~~p~v~~ai~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~-  127 (396)
T PRK04073         53 NQGHRHPKIIQALKDQADKVTLTSR-AFHSDQLGPWYEKVAKLTG---KDMVLPMNTGAEAVETAIKAARRWAYDVKGV-  127 (396)
T ss_pred             cCCCCCHHHHHHHHHHHhhcccccc-ccCCHHHHHHHHHHHhcCC---CCeEEEcCChHHHHHHHHHHHHHHhhhccCC-
Confidence            4899999999999999999877543 5678889999999999875   5799999999999999999999874332232 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                       +..|         .+||+          +.++|||+|.++++..+
T Consensus       128 -~~~r---------~~ii~----------~~~~~HG~~~~~~~~~~  153 (396)
T PRK04073        128 -EPNK---------AEIIA----------CEGNFHGRTMAAVSLSS  153 (396)
T ss_pred             -CCCC---------CEEEE----------ECCCcCCCCHHHHhhcC
Confidence             0022         27999          99999999998776554

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.78  E-value=6.8e-19  Score=156.64  Aligned_cols=86  Identities=15%  Similarity=0.061  Sum_probs=75.2

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      ++||+||+|++|+++|++++...   ...++...+|||+|++.+| + +++|+|+||||||||+|||+||+++    |+ 
T Consensus       112 ~lGh~~p~v~~av~~ql~~~~~~---~~~~~~~~~lAe~l~~~~p-~-~~~v~f~~SGsEA~e~AlklAR~~t----gr-  181 (474)
T PLN02482        112 IIGHADDEVLAALAETMKKGTSF---GAPCLLENVLAEMVIDAVP-S-VEMVRFVNSGTEACMGVLRLARAYT----GR-  181 (474)
T ss_pred             ccCCCCHHHHHHHHHHHhhCCCC---CCCCHHHHHHHHHHHHhCC-C-CCEEEEeCChHHHHHHHHHHHHHhc----CC-
Confidence            48999999999999999987643   4578899999999999998 4 7899999999999999999999873    44 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcc
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQG  120 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g  120 (158)
                                    .+||+          |.++|||.|..
T Consensus       182 --------------~~Ii~----------~~g~YHG~~~~  197 (474)
T PLN02482        182 --------------EKIIK----------FEGCYHGHADS  197 (474)
T ss_pred             --------------CEEEE----------ECCccCCCcch
Confidence                          27999          99999997743

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.78  E-value=8.1e-19  Score=151.60  Aligned_cols=99  Identities=25%  Similarity=0.218  Sum_probs=81.6

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.. ..+.++...+|+|+|++..+   .++++|++|||||||+|||+||+++..+.+. 
T Consensus        48 ~lGh~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~L~~~~~---~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~-  122 (397)
T TIGR03246        48 ALGHAHPELVKALIEQADKLWHIG-NGYTNEPVLRLAKKLVDATF---ADKVFFCNSGAEANEAALKLARRYALDKHGA-  122 (397)
T ss_pred             cCCCCCHHHHHHHHHHHHhccccc-CccCCHHHHHHHHHHHhhCC---CCEEEEeCCcHHHHHHHHHHHHHHHHhcCCC-
Confidence            489999999999999999876554 25678889999999999875   4699999999999999999999875432111 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                         .|         .+||+          +.++|||+|.++++.++
T Consensus       123 ---~r---------~~ii~----------~~~~yHG~~~~~~~~~~  146 (397)
T TIGR03246       123 ---DK---------SEIVA----------FKNSFHGRTLFTVSVGG  146 (397)
T ss_pred             ---CC---------CEEEE----------ECCCcCCccHHHHHhcC
Confidence               22         37999          99999999998777655

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.77  E-value=1.9e-18  Score=149.95  Aligned_cols=99  Identities=19%  Similarity=0.180  Sum_probs=81.4

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.. ..+.+++..+||++|.+..+   .++++|++|||||||+|+|+||+++.+  ++ 
T Consensus        49 ~lGh~~p~v~~a~~~q~~~~~~~~-~~~~~~~~~~la~~l~~~~~---~~~v~f~~SGseA~e~Aik~ar~~~~~--~~-  121 (395)
T PRK03715         49 CLGHCNPGMVEALAAQAEKLINPS-PAFYNEPMAKLAGLLTQHSC---FDKVFFANSGAEANEGAIKLARKWGRK--HK-  121 (395)
T ss_pred             cCCCCCHHHHHHHHHHHHhccccc-ccccCHHHHHHHHHHhhccC---CCEEEEeCCcHHHHHHHHHHHHHHhhc--cC-
Confidence            489999999999999999887654 25678899999999998753   689999999999999999999986421  11 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                       + .|         .+||+          ++++|||+|.++++..+.
T Consensus       122 -~-~r---------~~ii~----------~~~~yHG~t~~~~~~s~~  147 (395)
T PRK03715        122 -N-GA---------YEIIT----------FDHSFHGRTLATMSASGK  147 (395)
T ss_pred             -C-CC---------cEEEE----------ECCCcCCChHHHHhhcCC
Confidence             1 22         37999          999999999998877653

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.74  E-value=8.1e-18  Score=146.65  Aligned_cols=97  Identities=22%  Similarity=0.208  Sum_probs=81.2

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+..+..+.++...+||++|++..|.+..++++|++|||||||.|+|+||.++    ++ 
T Consensus        54 ~lGh~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~~----~r-  128 (425)
T PRK08088         54 NTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAAT----KR-  128 (425)
T ss_pred             CCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHHh----CC-
Confidence            3799999999999999999876544345688899999999998876522699999999999999999999863    33 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                                    .+||+          +.++|||.|.++.+..+
T Consensus       129 --------------~~iv~----------~~~~yHG~~~~~~~~~~  150 (425)
T PRK08088        129 --------------SGVIA----------FTGAYHGRTHYTLALTG  150 (425)
T ss_pred             --------------CeEEE----------ECCccCCccHHHHHhhC
Confidence                          26999          99999999999777554

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.74  E-value=1.1e-17  Score=146.80  Aligned_cols=85  Identities=20%  Similarity=0.158  Sum_probs=74.7

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      +|||+||.|++|+++|+++-..   .+.+++..+++||.|++..| . +++|.|+||||||+..|||+||.++    || 
T Consensus        66 ilGH~~p~V~~Av~~~l~~G~~---fg~Pte~Ei~~Aell~~~~p-~-~e~vrfvnSGTEAtmsAiRlARa~T----gR-  135 (432)
T COG0001          66 ILGHAHPAVVEAVQEQLERGLS---FGAPTELEVELAELLIERVP-S-IEKVRFVNSGTEATMSAIRLARAYT----GR-  135 (432)
T ss_pred             ccCCCCHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHHhcC-c-ccEEEEecchhHHHHHHHHHHHHhh----CC-
Confidence            6999999999999999988543   25689999999999999998 3 6899999999999999999999984    54 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCc
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQ  119 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~  119 (158)
                            +        |||.          |.|+|||..-
T Consensus       136 ------~--------kIik----------F~G~YHG~~D  150 (432)
T COG0001         136 ------D--------KIIK----------FEGCYHGHSD  150 (432)
T ss_pred             ------C--------eEEE----------EcCCCCCCcc
Confidence                  2        7999          9999999654

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.74  E-value=5.6e-18  Score=144.62  Aligned_cols=101  Identities=17%  Similarity=0.071  Sum_probs=86.0

Q ss_pred             CCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcccc
Q 031493            3 RWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLVD   82 (158)
Q Consensus         3 Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~~   82 (158)
                      |||||.|++|+.+|+++|...+ -.|.++...+++|.+.++++   +++|.-+|+|.||+|.|+||||++.++.++.  |
T Consensus        74 Ghchpki~~aLqeq~~kLtlss-rafYnd~~~~f~~~vt~lf~---~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~i--p  147 (427)
T KOG1402|consen   74 GHCHPKIIKALQEQADKLTLSS-RAFYNDVLGEFAEYVTKLFG---YDKVLPMNTGAEAVETACKLARKWGYRKKNI--P  147 (427)
T ss_pred             CCCCHHHHHHHHHHHhHhhhhh-HHHhhhhHHHHHHHHHHhcC---cceeeecccchhHHHHHHHHHHHHHHhhccC--C
Confidence            9999999999999999987665 36788999999999999986   7899999999999999999999986655554  2


Q ss_pred             ccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCCc
Q 031493           83 FLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGTL  128 (158)
Q Consensus        83 ~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~~  128 (158)
                        +++       .+||+          -.|.|||||+|+.|.++..
T Consensus       148 --~nk-------a~il~----------~~~nFhGrT~~ais~s~d~  174 (427)
T KOG1402|consen  148 --KNK-------AKILS----------AENNFHGRTLGAISLSTDP  174 (427)
T ss_pred             --ccc-------eeEEE----------ecccccCceeeeEEecCCc
Confidence              222       58999          9999999999987766543

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=99.73  E-value=2e-18  Score=148.53  Aligned_cols=127  Identities=23%  Similarity=0.167  Sum_probs=95.9

Q ss_pred             CCCCcHHHHHHHHH-HHHhcCccCC---CCCC-ChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhccccc
Q 031493            2 FRWFQIELARDMGY-TAARFGHVMF---PENV-YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD   76 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~e-Ql~~l~~~~~---~~~~-~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~   76 (158)
                      +|||||.+++++.+ |.-+. .++.   ..|+ .+....|-+.|+.++|.+ ++.|+++-+||.|||+|+|.|+.||...
T Consensus        90 lGYn~P~LvK~a~~p~~~~~-lvnRPALg~fP~kd~~~~l~~~ll~~APKG-~~~v~tm~cGs~aNEnA~K~afiwy~~k  167 (484)
T KOG1405|consen   90 LGYNNPALVKAAQQPQNATM-LVNRPALGNFPPKDFAEKLRQSLLSIAPKG-QKQVITMLCGSCANENAYKTAFIWYRAK  167 (484)
T ss_pred             cCCCCHHHHHHhcChHHHHH-HhccccccCCChhhHHHHHHHHHHhhCcch-HHHHHHHhccccccHHHHHHHHHHHHhh
Confidence            69999999999865 33221 1221   2344 344555667788889988 9999999999999999999999887643


Q ss_pred             -CCccccccCCC-------cccccccceeEecccccccccCCCCCcCCcCcccccC------CCCcccccccccccccc
Q 031493           77 -HDVLVDFLGKD-------TTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSN------HGTLEEAFFWTLLQFSC  141 (158)
Q Consensus        77 -~g~~~~~~~~~-------~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~------~~~~~~~~~~~~~~~~~  141 (158)
                       +|. .+++.++       ++||+|++.|++          |+++|||||+|++|.      |....++|+||++.|.-
T Consensus       168 ~rg~-~~~s~~e~eScm~n~aPg~P~lsvls----------F~gaFHGR~~g~lstT~SKpIHKldiPaFdWPiA~fP~  235 (484)
T KOG1405|consen  168 ERGQ-AGFSAEELESCMINQAPGAPDLSVLS----------FKGAFHGRTFGSLSTTHSKPIHKLDIPAFDWPIAPFPR  235 (484)
T ss_pred             cCCC-CCCCHHHHHHHHhcCCCCCCceeeee----------eccccccccccccccccCccccccCCCCCCCCCCCCcc
Confidence             442 3445433       899999999999          999999999997774      23456789999988764

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.72  E-value=2.3e-17  Score=142.33  Aligned_cols=99  Identities=23%  Similarity=0.220  Sum_probs=79.9

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      ++||+||+|++|+.+|+++..+... .+.+++..+|+++|++..+   .++++|++|||||||+|+|+||+++...++. 
T Consensus        53 ~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~~~~~~sGseA~e~a~klar~~~~~~~~~-  127 (403)
T PRK05093         53 ALGHCHPALVKALKEQGEKLWHISN-VFTNEPALRLAKKLIDATF---AERVFFANSGAEANEAAFKLARRYACDRHGP-  127 (403)
T ss_pred             cCCCCCHHHHHHHHHHHHhcCcccC-ccCCHHHHHHHHHHHhhCC---CCEEEEeCchHHHHHHHHHHHHHHHhhcCCC-
Confidence            4899999999999999988665432 3567888999999999864   5799999999999999999999875432221 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                         .+         .+||+          +.++|||+|.++++..+
T Consensus       128 ---~~---------~~ii~----------~~~~~HG~~~~~~~~~~  151 (403)
T PRK05093        128 ---EK---------TEIIA----------FHNSFHGRTLFTVSVGG  151 (403)
T ss_pred             ---CC---------CeEEE----------EcCCcCCchhhhHhhcC
Confidence               22         37999          99999999998766543

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.69  E-value=1.9e-16  Score=138.42  Aligned_cols=90  Identities=17%  Similarity=0.062  Sum_probs=76.1

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|+++..  . ..+.++...+|+++|+++.| + +++|+|++|||||||+|+|+||.+.    |+ 
T Consensus        63 ~lGh~~p~i~~a~~~~~~~~~--~-~~~~~~~~~~la~~L~~~~~-~-~~~v~~~~sGseA~e~Aik~a~~~~----g~-  132 (426)
T PRK00062         63 ILGHAHPEVVEAVIEAAEKGL--S-FGAPTELEVELAELVIELVP-S-IEMVRMVNSGTEATMSAIRLARGYT----GR-  132 (426)
T ss_pred             hcCCCCHHHHHHHHHHHHhCC--c-CCCCCHHHHHHHHHHHHhCC-C-CCEEEEecCHHHHHHHHHHHHHHHh----CC-
Confidence            389999999999999998843  2 24578888999999999887 4 6899999999999999999999862    33 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSN  124 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~  124 (158)
                                    .+||+          |.++|||.|.++.+.
T Consensus       133 --------------~~ii~----------~~~~yHG~t~~~~~~  152 (426)
T PRK00062        133 --------------DKIIK----------FEGCYHGHADSLLVK  152 (426)
T ss_pred             --------------CeEEE----------EcCccCCchhhhhhc
Confidence                          26999          999999999775554

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.68  E-value=1.5e-16  Score=136.21  Aligned_cols=100  Identities=19%  Similarity=0.151  Sum_probs=81.7

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+... .+.++...+|+|+|++..+   .++|+|++|||||||+|+|+||+++.. .|. 
T Consensus        44 ~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~~~~---~~~v~~~~sGseA~~~al~~ar~~~~~-~G~-  117 (389)
T PRK01278         44 SLGHAHPHLVEALKEQAEKLWHVSN-LYRIPEQERLAERLVENSF---ADKVFFTNSGAEAVECAIKTARRYHYG-KGH-  117 (389)
T ss_pred             cCCCCCHHHHHHHHHHHHhcCcccc-ccCChHHHHHHHHHHhhCC---CCEEEEcCCcHHHHHHHHHHHHHHHHh-cCC-
Confidence            4899999999999999998776542 4678889999999999875   579999999999999999999986432 332 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                       + .|         .+||.          +.++|||.|.++++..+.
T Consensus       118 -~-~r---------~~vi~----------~~~~yhg~~~~~~~~~~~  143 (389)
T PRK01278        118 -P-ER---------YRIIT----------FEGAFHGRTLATIAAGGQ  143 (389)
T ss_pred             -C-CC---------CEEEE----------ECCCcCCCcHHHHhccCC
Confidence             1 22         37999          999999999987766543

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.68  E-value=2.2e-16  Score=136.81  Aligned_cols=89  Identities=13%  Similarity=0.056  Sum_probs=75.7

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      ++||+||+|++|+++|++++.+   ..+.++...+|+|+|++..|.  .++|+|++|||||||+|+|+||.++    |+ 
T Consensus        61 ~lGh~~p~v~~ai~~q~~~~~~---~~~~~~~~~~lae~l~~~~~~--~~~v~~~~sGseA~e~Alk~ar~~~----gr-  130 (423)
T TIGR00713        61 ILGHAHPRVVEAVKEALERGTS---YGAPTEAEILLAKEIISRVPS--VEMVRFVNSGTEATMSAVRLARGYT----GR-  130 (423)
T ss_pred             ccCCCCHHHHHHHHHHHHhCCc---CCCCCHHHHHHHHHHHHhCCc--ccEEEEeCCHHHHHHHHHHHHHHhh----CC-
Confidence            4899999999999999998653   245788899999999999874  4799999999999999999999873    43 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCccccc
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCS  123 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s  123 (158)
                                    .+||+          +.++|||.|.+..+
T Consensus       131 --------------~~ii~----------~~~~yhG~~~~~~~  149 (423)
T TIGR00713       131 --------------DKIIK----------FEGCYHGHHDALLV  149 (423)
T ss_pred             --------------CEEEE----------EcCCCCCChhhhhc
Confidence                          27999          99999999876544

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.67  E-value=2.1e-16  Score=138.62  Aligned_cols=67  Identities=19%  Similarity=0.138  Sum_probs=57.9

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRK   72 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~   72 (158)
                      .+||+||+|++|+++|++++...   ...++...+|||+|++++| + .++|+|+||||||||+|+|+||++
T Consensus        61 ~lGh~~p~v~~Ai~~q~~~~~~~---~~~~~~~~~la~~l~~~~p-~-~~~v~f~~sGseA~e~AlklAr~~  127 (431)
T PRK06209         61 GLGHAYPPVVEAVREALQDGCNF---TRPSAIELDAAESFLELID-G-ADMVKFCKNGSDATSAAVRLARAY  127 (431)
T ss_pred             hcCCCCHHHHHHHHHHHHhCcCC---CCCCHHHHHHHHHHHHhCC-c-cceEEEecCHHHHHHHHHHHHHHH
Confidence            48999999999999999987532   3345566789999999987 3 689999999999999999999987

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.67  E-value=3.1e-16  Score=135.12  Aligned_cols=100  Identities=16%  Similarity=0.034  Sum_probs=80.7

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCccc
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLV   81 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~   81 (158)
                      +||+||+|++|+++|++++.+... .+.++...+|+++|++..+   .++++|++||+||||+|||+||.++.+.+|.  
T Consensus        51 ~Gh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~--  124 (401)
T TIGR01885        51 QGHCHPKIVKALTEQAQKLTLSSR-AFYNDVFGEFAEYVTKLFG---YDKVLPMNTGAEAVETAIKLARKWGYKVKGI--  124 (401)
T ss_pred             CCCCCHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHHHhhcC---CCEEEEeCccHHHHHHHHHHHHHHhhhhcCC--
Confidence            799999999999999998776542 3467888999999999875   5799999999999999999999875432221  


Q ss_pred             cccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           82 DFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        82 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                      . .++        .+|++          ++++|||+|.++++..+
T Consensus       125 ~-~~~--------~~i~~----------~~~~yhg~~~~~~~~~~  150 (401)
T TIGR01885       125 P-ENQ--------AIIVS----------AKGNFHGRTLGAISMST  150 (401)
T ss_pred             C-CCC--------CEEEE----------ECCCcCcccHHHHhCcC
Confidence            1 111        37999          99999999999777654

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.65  E-value=5e-16  Score=133.32  Aligned_cols=100  Identities=14%  Similarity=-0.044  Sum_probs=79.9

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+... .+.++...+|+++|++..+   .++++|++||+||||+|||+||.++...+|. 
T Consensus        54 ~~Gh~~~~i~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~-  128 (401)
T PRK00854         54 NQGHCHPKILAAMVEQAGRLTLTSR-AFRNDQLAPLYEELAALTG---SHKVLPMNSGAEAVETAIKAVRKWGYEVKGV-  128 (401)
T ss_pred             cCCCCCHHHHHHHHHHHhhcccccc-ccCCHHHHHHHHHHHhhCC---CCEEEEeCCcHHHHHHHHHHHHHHHHhccCC-
Confidence            3799999999999999999876542 4678889999999999875   4699999999999999999999864322232 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNH  125 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~  125 (158)
                       +..|         .+||+          +.++|||+|.+.++..
T Consensus       129 -~~~~---------~~vi~----------~~~~~HG~~~~~~~~~  153 (401)
T PRK00854        129 -PEGQ---------AEIIV----------CADNFHGRTLSIVGFS  153 (401)
T ss_pred             -CCCC---------ceEEE----------ECCCcCCccHHHHhcc
Confidence             1112         27999          9999999998866543

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=99.64  E-value=4.8e-16  Score=132.00  Aligned_cols=87  Identities=18%  Similarity=0.188  Sum_probs=75.7

Q ss_pred             CCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcccc
Q 031493            3 RWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLVD   82 (158)
Q Consensus         3 Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~~   82 (158)
                      ||+||+|++|+..|+..+...  ..|.++...+.|++|...+|+  ++.+||+|||||||+.|+||||.++    +.   
T Consensus        60 ghchp~VV~A~~kQmat~~tN--~RFlhd~lv~cA~~l~stlPe--Lsvc~F~NSGSEANDLALRLAR~ft----kh---  128 (452)
T KOG1403|consen   60 GHCHPEVVRAGAKQMATISTN--NRFLHDELVQCARTLTSTLPE--LSVCFFVNSGSEANDLALRLARNFT----KH---  128 (452)
T ss_pred             ccCCHHHHHHHHHHHhHhccc--chhhHHHHHHHHHHHhhcCCC--ceEEEEecCCchhhHHHHHHHHhhc----cc---
Confidence            999999999999999887654  378899999999999999984  8999999999999999999999984    22   


Q ss_pred             ccCCCcccccccceeEecccccccccCCCCCcCCcCcccc
Q 031493           83 FLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFC  122 (158)
Q Consensus        83 ~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~  122 (158)
                                  ..+|.          ...+|||.-...+
T Consensus       129 ------------qDvIt----------ldHAYHGHl~s~m  146 (452)
T KOG1403|consen  129 ------------QDVIT----------LDHAYHGHLQSVM  146 (452)
T ss_pred             ------------CceEE----------Eechhccceeeee
Confidence                        25888          9999999766544

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.61  E-value=3.2e-15  Score=127.90  Aligned_cols=101  Identities=14%  Similarity=-0.032  Sum_probs=76.3

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.+. .+.++...++.++|.++.  + .++++|++|||||||+|||++|++....+|. 
T Consensus        44 ~~Gh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~--~-~~~~~~~~SGs~A~e~al~~~~~~~~~~~~~-  118 (400)
T PTZ00125         44 NQGHCHPKILAALINQAQKLTLTSR-AFYNDVLGLAEKYITDLF--G-YDKVLPMNSGAEAGETALKFARKWGYEVKGI-  118 (400)
T ss_pred             cCCcCCHHHHHHHHHHHHhcccccc-cccCHHHHHHHHHHHhCC--C-CCEEEEeCCcHHHHHHHHHHHHHHHHhccCC-
Confidence            3899999999999999998876542 345666666666666653  3 6899999999999999999999764322222 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                       +..+         .+||+          +.++|||++.+.++..+
T Consensus       119 -~~~~---------~~vl~----------~~~~~Hg~~~~~~~~~~  144 (400)
T PTZ00125        119 -PENQ---------AKIIF----------CNGNFSGRTIGACSAST  144 (400)
T ss_pred             -CCCC---------CeEEE----------ECCCcCCccHHHHhhcC
Confidence             1012         37999          99999999998776543

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.58  E-value=8.8e-15  Score=124.50  Aligned_cols=93  Identities=22%  Similarity=0.203  Sum_probs=77.1

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.+ ..+.++...+|+++|.+..|   .++++|++||+||||+|+|+||.+.    |+ 
T Consensus        42 ~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~~---~~~~~~~~sG~~a~~~A~~~a~~~~----g~-  112 (377)
T PRK02936         42 NLGHCHPTVTKAVQEQLDDIWHVS-NLFTNSLQEEVASLLAENSA---GDLVFFCNSGAEANEAALKLARKHT----GK-  112 (377)
T ss_pred             cCCCCCHHHHHHHHHHHHhccccc-cccCCHHHHHHHHHHHhcCC---CCEEEEeCCcHHHHHHHHHHHHHhc----CC-
Confidence            389999999999999999875543 24567888999999998765   4689999999999999999999762    33 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                                    .+||+          +.++|||.|.++++..+
T Consensus       113 --------------~~vi~----------~~~~~Hg~~~~~~~~~~  134 (377)
T PRK02936        113 --------------SKIVT----------FEQSFHGRTFGTMSATG  134 (377)
T ss_pred             --------------CeEEE----------ECCCcCCCcHHhhhccC
Confidence                          26999          99999999998776544

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.46  E-value=5e-13  Score=114.66  Aligned_cols=94  Identities=24%  Similarity=0.244  Sum_probs=77.7

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCccc
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLV   81 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~   81 (158)
                      |||+||+|++|+++|+++..+.. ..+.++...+|+++|++..+....++++|++||+||||+|+|+++..     |+  
T Consensus        57 lG~~~p~v~~ai~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~~-----g~--  128 (398)
T PRK03244         57 LGHAHPAVVEAVTRQLATLGHVS-NLFATEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLT-----GR--  128 (398)
T ss_pred             CCCCCHHHHHHHHHHHHhccCcc-CccCCHHHHHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHHH-----CC--
Confidence            79999999999999999876543 35678888999999999876322479999999999999999999963     32  


Q ss_pred             cccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           82 DFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        82 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                                   .+||.          +.++|||.|.++++..+
T Consensus       129 -------------~~ii~----------~~~~yhg~~~~~~~~~~  150 (398)
T PRK03244        129 -------------TKIVA----------AEGGFHGRTMGALALTG  150 (398)
T ss_pred             -------------CeEEE----------ECCCcCCccHHHHhccC
Confidence                         16888          88999999988776554

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.42  E-value=7.6e-13  Score=113.01  Aligned_cols=91  Identities=20%  Similarity=0.199  Sum_probs=71.5

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .||| ||+|++|+.+|++++.+.. ..+.++...+++++|...   . ..+++|++|||||||+|+|+||++.    ++ 
T Consensus        42 ~lG~-~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~---~-~~~~~~~~SGseA~~~Al~~ar~~~----~~-  110 (375)
T PRK04260         42 NLGF-HPQVQQALQKQAGLIWHSP-NLYLNSLQEEVAQKLIGD---K-DYLAFFCNSGAEANEAAIKIARKAT----GK-  110 (375)
T ss_pred             cCCC-CHHHHHHHHHHHHhcCccc-CccCCHHHHHHHHHHhcC---c-CCEEEEcCccHHHHHHHHHHHHHhc----CC-
Confidence            3899 9999999999998865433 245577778888888652   2 3478999999999999999999762    32 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                                    .+||+          +.++|||.+.+.++..+
T Consensus       111 --------------~~vv~----------~~~~yHg~~~~~~~~~~  132 (375)
T PRK04260        111 --------------QEIIT----------FQNSFHGRTFGSMSATG  132 (375)
T ss_pred             --------------CeEEE----------ECCCcCcccHHHHhccC
Confidence                          26999          99999999988766544

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.42  E-value=8.9e-13  Score=112.61  Aligned_cols=94  Identities=28%  Similarity=0.278  Sum_probs=77.0

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|+++..+.......++...+++++|++..|.+ .++++|++||+|||++|++++|.+.    ++ 
T Consensus        49 ~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~v~~~~sgsea~~~al~~~~~~~----~~-  122 (413)
T cd00610          49 NLGHNHPEVVEALKEQLAKLTHFSLGFFYNEPAVELAELLLALTPEG-LDKVFFVNSGTEAVEAALKLARAYT----GR-  122 (413)
T ss_pred             ccCCCCHHHHHHHHHHHHhCcCccCcccCCHHHHHHHHHHHHhCCCC-CCEEEEcCcHHHHHHHHHHHHHHHc----CC-
Confidence            37999999999999999877654322235788899999999998755 7899999999999999999999753    22 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSN  124 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~  124 (158)
                                    .+||.          +.++|||.+.+.++.
T Consensus       123 --------------~~ii~----------~~~~yhg~~~~~~~~  142 (413)
T cd00610         123 --------------KKIIS----------FEGAYHGRTLGALSL  142 (413)
T ss_pred             --------------CeEEE----------ECCCcCCccHHHHHh
Confidence                          16898          999999999875544

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.39  E-value=1.8e-12  Score=110.57  Aligned_cols=97  Identities=22%  Similarity=0.179  Sum_probs=77.4

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|.+|+++|+++..+.. ..+.++...+|+++|.+..  + .++++|++||+||+|+|+|+||.+..+ .+. 
T Consensus        52 ~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~--~-~~~v~~~~gg~eA~~~al~~a~~~~~~-~~~-  125 (396)
T PRK02627         52 NLGHCHPKLVEAIQEQAAKLIHTS-NLYYIEPQEELAEKLVELS--G-MDKVFFCNSGAEANEAAIKLARKYGHK-KGI-  125 (396)
T ss_pred             cCCCCCHHHHHHHHHHHhhccccc-cccCCHHHHHHHHHHHhhc--C-CCEEEECCCcHHHHHHHHHHHHHHhcc-cCC-
Confidence            379999999999999998876543 2456888999999999985  3 689999999999999999999986421 111 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNH  125 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~  125 (158)
                         .+         .+|+.          +.++|||.+.+.++..
T Consensus       126 ---~~---------~~ii~----------~~~~yhg~~~~~~~~~  148 (396)
T PRK02627        126 ---EK---------PEIIT----------AENSFHGRTLATLSAT  148 (396)
T ss_pred             ---CC---------CeEEE----------ECCCcCcccHHHHHhc
Confidence               11         26999          9999999998866544

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=98.97  E-value=2.8e-09  Score=90.22  Aligned_cols=94  Identities=27%  Similarity=0.260  Sum_probs=73.8

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCccc
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLV   81 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~   81 (158)
                      +||+||.|.+++.+++++..+.. ..+.++...+|+++|.+..+   .+++++++||+||++.|++++|.+..+ .|.  
T Consensus        41 lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~g---~~~~~~~~sg~~a~~~a~~~~~~~~~~-~~~--  113 (379)
T TIGR00707        41 LGHAHPKLVEALKEQLEKLVHVS-NLYYTEPQEELAEKLVEHSG---ADRVFFCNSGAEANEAALKLARKYTGD-KGK--  113 (379)
T ss_pred             CCCCCHHHHHHHHHHHhhccccc-cccCCHHHHHHHHHHHhhCC---CCEEEEeCCcHHHHHHHHHHHHHHhhc-cCC--
Confidence            79999999999999998865432 24567888999999999874   579999999999999999999875321 110  


Q ss_pred             cccCCCcccccccceeEecccccccccCCCCCcCCcCccccc
Q 031493           82 DFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCS  123 (158)
Q Consensus        82 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s  123 (158)
                        .+         .+||.          +..+|||.+.....
T Consensus       114 --~~---------~~vi~----------~~~~yh~~~~~~~~  134 (379)
T TIGR00707       114 --EK---------KKIIA----------FENSFHGRTMGALS  134 (379)
T ss_pred             --CC---------CeEEE----------ECCCcCCccHHHHH
Confidence              11         26888          99999998876443

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK07505 hypothetical protein; Provisional

Probab=98.94  E-value=3.6e-09  Score=91.26  Aligned_cols=87  Identities=13%  Similarity=-0.067  Sum_probs=65.4

Q ss_pred             CC-CCcHHHHHHHHHHHHhcCc---cCC-CCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhccccc
Q 031493            2 FR-WFQIELARDMGYTAARFGH---VMF-PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD   76 (158)
Q Consensus         2 ~G-h~hP~Iv~Av~eQl~~l~~---~~~-~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~   76 (158)
                      +| |+||+|++|+++|+++..+   ... ..+.++...+++++|++..+   . ++++.+||+||+|.|+|++++...  
T Consensus        57 lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~~---~-~~~~~~sG~~a~~~ai~~~~~~~~--  130 (402)
T PRK07505         57 LGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELFG---A-SVLTFTSCSAAHLGILPLLASGHL--  130 (402)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHhC---C-CEEEECChHHHHHHHHHHHHhccc--
Confidence            57 9999999999999988541   111 12356778999999999875   4 788888999999999999875321  


Q ss_pred             CCccccccCCCcccccccceeEecccccccccCCCCCcCCcC
Q 031493           77 HDVLVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLT  118 (158)
Q Consensus        77 ~g~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T  118 (158)
                      ++.     +         .+||.          +.++|||..
T Consensus       131 ~~~-----~---------~~vi~----------~~~~~H~s~  148 (402)
T PRK07505        131 TGG-----V---------PPHMV----------FDKNAHASL  148 (402)
T ss_pred             CCC-----C---------CCEEE----------EchhhhHhH
Confidence            111     1         25888          999999953

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=98.60  E-value=9.9e-08  Score=82.45  Aligned_cols=89  Identities=11%  Similarity=-0.079  Sum_probs=65.7

Q ss_pred             CCC-CcHHHHHHHHHHHHhcCccC---CC-CCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHH-HHHhcccc
Q 031493            2 FRW-FQIELARDMGYTAARFGHVM---FP-ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK-MAFRKFSF   75 (158)
Q Consensus         2 ~Gh-~hP~Iv~Av~eQl~~l~~~~---~~-~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlK-lAR~~~~~   75 (158)
                      +|- +||+|++|+.+|+++..+..   .. ...++...+|.++|+++.+   .++++|.+||++||+.|++ +++.+   
T Consensus        56 lgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g---~~~~~~~~SG~~An~~ai~~l~~~~---  129 (406)
T PRK13393         56 LGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHG---KEAALLFTSGYVSNWAALSTLGSRL---  129 (406)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhC---CCcEEEeCCcHHHHHHHHHHhhcCC---
Confidence            455 79999999999999876431   11 1234567899999999986   4688999999999999999 66532   


Q ss_pred             cCCccccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccC
Q 031493           76 DHDVLVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSN  124 (158)
Q Consensus        76 ~~g~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~  124 (158)
                       +|                 .+|.          ....|||.+...+..
T Consensus       130 -~g-----------------~~I~----------~~~~~H~s~~~~~~~  150 (406)
T PRK13393        130 -PG-----------------CVIL----------SDELNHASMIEGIRH  150 (406)
T ss_pred             -CC-----------------CEEE----------EccchhHHHHHHHHH
Confidence             11                 2555          677899988765443

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=98.06  E-value=1e-05  Score=69.60  Aligned_cols=65  Identities=18%  Similarity=0.104  Sum_probs=51.3

Q ss_pred             CcHHHHHHHHHHHHhcCccCC----CCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhc
Q 031493            5 FQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRK   72 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~----~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~   72 (158)
                      +||+|++|+.+|+++..+...    ....++...+|.++|++..+   .+.+++.+||++||+.|+++++..
T Consensus        60 ~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g---~~~~l~~~sG~~an~~ai~~l~~~  128 (402)
T TIGR01821        60 QHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHG---KESALVFTSGYVANDATLATLAKI  128 (402)
T ss_pred             CCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhC---CCeEEEECchHHHHHHHHHHhhCC
Confidence            489999999999998664321    01246678899999999986   356888899999999999998753

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK09064 5-aminolevulinate synthase; Validated

Probab=97.82  E-value=8.8e-05  Score=63.88  Aligned_cols=68  Identities=13%  Similarity=-0.019  Sum_probs=52.6

Q ss_pred             CCCC-cHHHHHHHHHHHHhcCccCC---CC-CCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhc
Q 031493            2 FRWF-QIELARDMGYTAARFGHVMF---PE-NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRK   72 (158)
Q Consensus         2 ~Gh~-hP~Iv~Av~eQl~~l~~~~~---~~-~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~   72 (158)
                      +|+. ||+|++|+.+++++..+...   .. ..++...+|.++|++..+   .+..++.+||++||+.|+++++.+
T Consensus        57 lgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g---~~~~~~~~sG~~an~~ai~~l~~~  129 (407)
T PRK09064         57 LGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHG---KEAALVFTSGYVSNDATLSTLAKL  129 (407)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhC---CCcEEEECcHHHHHHHHHHHHhCC
Confidence            5666 99999999999988654211   11 246778899999999875   356778899999999999988753

>PRK07179 hypothetical protein; Provisional

Probab=97.60  E-value=0.00027  Score=61.00  Aligned_cols=62  Identities=11%  Similarity=-0.016  Sum_probs=47.9

Q ss_pred             CcHHHHHHHHHHHHhcC---ccCCCCCC--ChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFG---HVMFPENV--YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~---~~~~~~~~--~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      +||+|++|+.+|+++..   +.+ ..+.  .+...+|.++|++..+   .+.++|++||+|||+.+++...
T Consensus        69 ~~p~v~~a~~~~~~~~~~~~~~s-~~~~~~~~~~~~le~~la~~~g---~~~~~~~~sG~~An~~~l~~l~  135 (407)
T PRK07179         69 GHPDIIKAQIAALQEEGDSLVMS-AVFLHDDSPKPQFEKKLAAFTG---FESCLLCQSGWAANVGLLQTIA  135 (407)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCcc-ccccCCchHHHHHHHHHHHHhC---CCcEEEECCHHHHHHHHHHHhC
Confidence            69999999999998863   212 1222  3567888999999875   4578889999999999999654

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=97.09  E-value=0.00086  Score=57.12  Aligned_cols=67  Identities=16%  Similarity=0.189  Sum_probs=47.1

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCC-------CCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHh
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPE-------NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR   71 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~-------~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~   71 (158)
                      .||+||++++++.+|+ .. +.....       -..+...+++++|.++.+.+ .+.+.++++|+++.+.+++.++.
T Consensus        30 ~~~~~p~~~~~~~~~~-~~-~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~-~~~v~~~~~g~~~~~~~~~~~~~  103 (398)
T cd00613          30 YKHNPPAVIKRNILEN-EF-YTAYTPYQPEISQGRLQALFELQTMLCELTGMD-VANASLQDEATAAAEAAGLAAIR  103 (398)
T ss_pred             cCCcCcHHHHHHhccc-cC-cccCCCCChhhhhhHHHHHHHHHHHHHHHHCCC-ccceeccCchHHHHHHHHHHHHh
Confidence            5899999999988887 32 111111       01234567888888887543 45788888888888999998874

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=96.91  E-value=0.0039  Score=53.90  Aligned_cols=61  Identities=16%  Similarity=0.104  Sum_probs=45.8

Q ss_pred             CcHHHHHHHHHHHHhcCccC---CCCC-CChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVM---FPEN-VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKM   68 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~---~~~~-~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKl   68 (158)
                      +||+|++|+.+++++.....   ...+ ..+...+|.++|++..+   ....++.+||++||+.+++.
T Consensus        61 ~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g---~~~~i~~~sG~~a~~~~i~~  125 (410)
T PRK13392         61 QHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHG---KESALLFTSGYVSNDAALST  125 (410)
T ss_pred             CCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhC---CCCEEEECcHHHHHHHHHHH
Confidence            59999999999998865321   0112 23467889999999886   34667778999999999993

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=96.64  E-value=0.01  Score=49.93  Aligned_cols=68  Identities=12%  Similarity=-0.132  Sum_probs=47.3

Q ss_pred             CCCcHHHHHHHHHHHHhcCccCCCCCCC--hHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhc
Q 031493            3 RWFQIELARDMGYTAARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRK   72 (158)
Q Consensus         3 Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~--~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~   72 (158)
                      -|.||++++++.++++...... ..+..  +...++.+.|.++..-+ -..+.|+++|+||++.|++.++..
T Consensus        30 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~g~~-~~~~~~~~ggt~a~~~a~~~~~~~   99 (371)
T PRK13520         30 TEPHPIARKAHEMFLETNLGDP-GLFPGTAKLEEEAVEMLGELLHLP-DAYGYITSGGTEANIQAVRAARNL   99 (371)
T ss_pred             cCchHHHHHHHHHHHhcCCCCc-ccCccHHHHHHHHHHHHHHHhCCC-CCCeEEecCcHHHHHHHHHHHHhh
Confidence            4789999999999987532211 12222  22357788888877533 245788999999999999988753

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=96.62  E-value=0.011  Score=49.01  Aligned_cols=66  Identities=15%  Similarity=0.014  Sum_probs=47.6

Q ss_pred             CCCC-cHHHHHHHHHHHHhcCccCC----CCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            2 FRWF-QIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         2 ~Gh~-hP~Iv~Av~eQl~~l~~~~~----~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      +|+. ||+|.+|+++++++......    .....+...++.+.|.+..+   .+...+.+||++++.++++...
T Consensus        12 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~---~~~~iv~~sg~~a~~~~~~~~~   82 (349)
T cd06454          12 LGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHG---KEAALVFSSGYAANDGVLSTLA   82 (349)
T ss_pred             cccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhC---CCCEEEeccHHHHHHHHHHHhc
Confidence            6888 99999999999987432110    01235566788888888875   3456777899999999886553

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=96.38  E-value=0.021  Score=48.00  Aligned_cols=65  Identities=20%  Similarity=0.075  Sum_probs=46.6

Q ss_pred             CCC-CcHHHHHHHHHHHHhcCccCC----CCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            2 FRW-FQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         2 ~Gh-~hP~Iv~Av~eQl~~l~~~~~----~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      +|| .+|+|++++++++++......    .....+...++.+++++...   .+.+++.++|++++..+++..
T Consensus        50 ~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~---~~~~i~~~~g~~~~~~~l~~~  119 (385)
T PRK05958         50 LGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFG---AERALLFSSGYAANLAVLTAL  119 (385)
T ss_pred             ccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC---CCcEEEECcHHHHHHHHHHHh
Confidence            576 789999999999977432110    01235567788899988874   346777789999999888643

>PLN02822 serine palmitoyltransferase

Probab=96.25  E-value=0.012  Score=52.71  Aligned_cols=60  Identities=12%  Similarity=0.108  Sum_probs=44.6

Q ss_pred             CcHHHHHHHHHHHHhcCccCC----CCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK   67 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~----~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlK   67 (158)
                      +||+|++|+.+++++......    ...+++...+|.|+|++..+.  -+.++|+++++ ++.+|++
T Consensus       124 ~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~--~~~i~~s~G~~-a~~sai~  187 (481)
T PLN02822        124 GNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGT--PDSILYSYGLS-TIFSVIP  187 (481)
T ss_pred             CCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCC--CCEEEECCHHH-HHHHHHH
Confidence            699999999999998554211    012467788999999999874  36788876555 7888877

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=96.17  E-value=0.034  Score=47.15  Aligned_cols=65  Identities=12%  Similarity=-0.008  Sum_probs=47.4

Q ss_pred             CCC-CcHHHHHHHHHHHHhcCccCC----CCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            2 FRW-FQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         2 ~Gh-~hP~Iv~Av~eQl~~l~~~~~----~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      +|| .+|++++++.+++++......    ..-..+...+++++|.+..+   .+..++.+||++|+++|++..
T Consensus        44 ~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g---~~~~i~~~sG~~a~~~a~~~~  113 (385)
T TIGR01825        44 LGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKK---TEAALVFQSGFNTNQGVLSAL  113 (385)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhC---CCcEEEECcHHHHHHHHHHHh
Confidence            588 899999999999876433110    01134567788999988765   345677789999999998865

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=95.47  E-value=0.099  Score=43.36  Aligned_cols=65  Identities=15%  Similarity=0.032  Sum_probs=45.2

Q ss_pred             CCC-CcHHHHHHHHHHHHhcCccCC-CC--C-CChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            2 FRW-FQIELARDMGYTAARFGHVMF-PE--N-VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         2 ~Gh-~hP~Iv~Av~eQl~~l~~~~~-~~--~-~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      ||+ .+|+|++++.+++++...... ..  + ..+...++.++|++...   .+..++.++|++++..+++..
T Consensus        27 ~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~---~~~~i~~~~G~~~~~~~l~~~   96 (360)
T TIGR00858        27 LGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKG---TEAALLFSSGYLANVGVISAL   96 (360)
T ss_pred             ccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC---CCCEEEECchHHHHHHHHHHh
Confidence            684 889999999999976443210 01  1 23557778899988764   235666778999999887654

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=94.22  E-value=0.3  Score=41.23  Aligned_cols=65  Identities=15%  Similarity=-0.013  Sum_probs=44.4

Q ss_pred             CCC-CcHHHHHHHHHHHHhcCccC-CCCC---CChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            2 FRW-FQIELARDMGYTAARFGHVM-FPEN---VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         2 ~Gh-~hP~Iv~Av~eQl~~l~~~~-~~~~---~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      +|| .+|++.+++++++++..+.. ...+   ..+...++++.|.+..+   .+...+.+||++|++.+++..
T Consensus        53 ~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g---~~~~i~~tsG~~a~~~~~~~l  122 (397)
T PRK06939         53 LGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLG---TEDAILYSSCFDANGGLFETL  122 (397)
T ss_pred             cccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhC---CCcEEEEcChHHHHHHHHHHh
Confidence            467 68999999999987743321 1111   23455678888888764   335566778999999998754

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=93.24  E-value=0.29  Score=35.50  Aligned_cols=37  Identities=30%  Similarity=0.278  Sum_probs=28.4

Q ss_pred             HHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHh
Q 031493           34 LECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR   71 (158)
Q Consensus        34 ~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~   71 (158)
                      .++.++|++....+ .+.+.++++|++|++.+++.++.
T Consensus         3 ~~~~~~l~~~~~~~-~~~~~~~~~~t~a~~~~~~~~~~   39 (170)
T cd01494           3 EELEEKLARLLQPG-NDKAVFVPSGTGANEAALLALLG   39 (170)
T ss_pred             HHHHHHHHHHcCCC-CCcEEEeCCcHHHHHHHHHHhCC
Confidence            45667777776323 56899999999999999998753

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=93.11  E-value=0.4  Score=41.10  Aligned_cols=57  Identities=11%  Similarity=-0.042  Sum_probs=44.8

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKM   68 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKl   68 (158)
                      +||+|.+|..+.+++..     + ..+...+|.++|++...-+ .+.++.++||++||..++..
T Consensus        34 ~~~~~~~~~~~~~~~~~-----g-~~~~~~~Le~~lA~~~g~~-~e~ilv~~gg~~a~~~~~~a   90 (346)
T TIGR03576        34 GGFKIDEEDLELLETYV-----G-PAIFEEKVQELGREHLGGP-EEKILVFNRTSSAILATILA   90 (346)
T ss_pred             CChhHHHHHHHHHHHhc-----C-CHHHHHHHHHHHHHHcCCC-cceEEEECCHHHHHHHHHHH
Confidence            59999999999987742     1 3466778888998887533 37899999999999998863

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=91.82  E-value=0.96  Score=38.36  Aligned_cols=64  Identities=16%  Similarity=0.105  Sum_probs=42.4

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCC------ChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPENV------YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~------~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      -.+.|.+++.+.++.. ..+.....      .+...++-+++.+++.-+ .+.+.|+++|+||++.|++...
T Consensus        11 ~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~i~~t~~~t~a~~~al~~~~   80 (379)
T TIGR03402        11 VDPEVLEAMLPYFTEY-FGNPSSMHSFGGEVGKAVEEAREQVAKLLGAE-PDEIIFTSGGTESDNTAIKSAL   80 (379)
T ss_pred             CCHHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCcHHHHHHHHHHHHH
Confidence            4688999998887642 11111111      122345557777776544 4679999999999999999775

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=90.86  E-value=1.1  Score=37.28  Aligned_cols=38  Identities=18%  Similarity=0.172  Sum_probs=30.8

Q ss_pred             ChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493           30 YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus        30 ~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .+...++.++|++..+   .+.+.+++||++|++.+++..+
T Consensus        17 ~~~~~~~~~~la~~~~---~~~~~~~~sgt~al~~~l~~l~   54 (352)
T cd00616          17 GPKVREFEKAFAEYLG---VKYAVAVSSGTAALHLALRALG   54 (352)
T ss_pred             CHHHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHHcC
Confidence            4567788889998875   3578888999999999998664

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=90.45  E-value=1.5  Score=36.74  Aligned_cols=64  Identities=8%  Similarity=-0.015  Sum_probs=42.1

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCC-------hHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVY-------EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~-------~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      -++.+.+|+.+.++.... ......+       +...++.++|+++..-+ .+.+.|+++++||++.+++...
T Consensus        10 ~~~~v~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~v~~~~g~t~a~~~~l~~l~   80 (353)
T TIGR03235        10 IDPAVAEAMLPWLLEEFG-NPSSRTHEFGHNAKKAVERARKQVAEALGAD-TEEVIFTSGATESNNLAILGLA   80 (353)
T ss_pred             CCHHHHHHHHHHHHhcCC-CCCchhhHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCCHHHHHHHHHHHHH
Confidence            468899999888754221 1111111       22456667777777533 4579999999999999997654

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=90.37  E-value=0.96  Score=40.24  Aligned_cols=65  Identities=17%  Similarity=-0.080  Sum_probs=39.0

Q ss_pred             cHHHHHHHHHHHHhcCccCCCCCC--ChHHHHHHHHHHhhcCCCCC-CcEEE--eCChHHHHHHHHHHHHh
Q 031493            6 QIELARDMGYTAARFGHVMFPENV--YEPALECAELLLQGVGKGWA-SRAYF--SDNGSTAIEIALKMAFR   71 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~~~~--~~~~~~LAe~L~~~~P~~~l-~~v~f--~~SGSEA~E~AlKlAR~   71 (158)
                      +|++.+++.+.+++... ++...+  .+...+.-+.|.+++..+.- +.+.|  +++|||||-.||+.||.
T Consensus        54 ~p~~~~~~~~~l~~~~~-np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~  123 (431)
T TIGR01788        54 EPEARKLMDETINKNMI-DKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKW  123 (431)
T ss_pred             CHHHHHHHHHHHhcCCC-CcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHH
Confidence            78888888887764221 111222  23334455566666542200 23544  78999999999998874

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=90.35  E-value=0.65  Score=41.13  Aligned_cols=64  Identities=14%  Similarity=0.039  Sum_probs=41.6

Q ss_pred             cHHHHHHHHHHHHhcCccCCCC---CC---ChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHh
Q 031493            6 QIELARDMGYTAARFGHVMFPE---NV---YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR   71 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~~---~~---~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~   71 (158)
                      +|++++++...+... +.+...   +-   ....++.-+.+++++.-. ...++|+++|+|+|-.|||=+..
T Consensus        14 ~~~v~~~m~~~~~~~-fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~-~~eIiFTSG~TEsnNlaI~g~~~   83 (386)
T COG1104          14 DPEVLEAMLPYLTEV-FGNPSSLHSFGREARKAVEEAREQIAKLLGAD-PEEIIFTSGATESNNLAIKGAAL   83 (386)
T ss_pred             CHHHHHHHHHHHHhh-cCCccchhHhHHHHHHHHHHHHHHHHHHhCCC-CCeEEEecCCcHHHHHHHHhhHH
Confidence            689999999988765 222111   11   111223334555666544 46899999999999999996543

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=90.24  E-value=0.62  Score=40.28  Aligned_cols=41  Identities=24%  Similarity=0.198  Sum_probs=33.1

Q ss_pred             CCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493           26 PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus        26 ~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      ..+.++...+|.++|+++.+   .+.+++++||++|++++++..
T Consensus        49 ~r~~~p~~~~le~~la~l~g---~~~~~~~~sG~~Ai~~al~al   89 (380)
T TIGR01325        49 SRYANPTVAAFEERIAALEG---AERAVATATGMSAIQAALMTL   89 (380)
T ss_pred             ecCCCchHHHHHHHHHHHhC---CCcEEEECCHHHHHHHHHHHH
Confidence            35677788899999999864   457788999999999999644

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=90.12  E-value=1.9  Score=36.59  Aligned_cols=64  Identities=8%  Similarity=-0.069  Sum_probs=42.1

Q ss_pred             CCCC-cHHHHHHHHHHHHhcCc-cCCCCC--C-ChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHH
Q 031493            2 FRWF-QIELARDMGYTAARFGH-VMFPEN--V-YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKM   68 (158)
Q Consensus         2 ~Gh~-hP~Iv~Av~eQl~~l~~-~~~~~~--~-~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKl   68 (158)
                      +|+. +|++++++.+++++... .....+  . .+...+|-++|++...   .+.+...+||++|+..++..
T Consensus        49 lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~g---~~~~ii~~~~~~a~~~~~~~  117 (393)
T TIGR01822        49 LGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLG---TEDTILYASCFDANGGLFET  117 (393)
T ss_pred             cccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhC---CCcEEEECchHHHHHHHHHH
Confidence            3666 89999999999987422 111111  1 3445667788888775   23555558999999977653

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=89.93  E-value=1.1  Score=38.33  Aligned_cols=57  Identities=14%  Similarity=-0.046  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            7 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         7 P~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .+..+++.+.++.-..    ....+...+|-+++.+.++   ...+..++||+.|.++|++...
T Consensus         5 ~e~~~~v~~~l~s~~~----~~~g~~~~~fE~~~a~~~g---~~~~~~~~sgt~Al~~al~~l~   61 (363)
T PF01041_consen    5 EEEIDAVLEVLRSGWL----STYGPYVEEFEKEFAEYFG---VKYAVAVSSGTSALHLALRALG   61 (363)
T ss_dssp             HHHHHHHHHHHHHTCC----SSSSHHHHHHHHHHHHHHT---SSEEEEESSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCc----cCCCHHHHHHHHHHHHHhC---CCeEEEeCChhHHHHHHHHhcC
Confidence            4556777777765422    1125677889999999885   5689999999999999998743

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PRK06225 aspartate aminotransferase; Provisional

Probab=89.76  E-value=1.5  Score=37.24  Aligned_cols=61  Identities=15%  Similarity=0.088  Sum_probs=42.2

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCC-hHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVY-EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~-~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      -+|++.+++.++++....   ..+.. ....+|-+.+++...-. .+.+.++++|+||+..+++..
T Consensus        42 ~~~~~~~a~~~~~~~~~~---~~y~~~~g~~~lr~~ia~~l~~~-~~~v~~~~g~t~al~~~~~~~  103 (380)
T PRK06225         42 PHEEVREAMIRCIEEGEY---CKYPPPEGFPELRELILKDLGLD-DDEALITAGATESLYLVMRAF  103 (380)
T ss_pred             CCHHHHHHHHHHHhcCCC---CCCCCCcchHHHHHHHHHhcCCC-CCcEEEeCCHHHHHHHHHHHh
Confidence            378999999988764221   12222 22455667777776433 457999999999999998865

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=89.64  E-value=0.95  Score=39.49  Aligned_cols=59  Identities=14%  Similarity=0.062  Sum_probs=42.3

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCC-hHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVY-EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~-~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .+|++.+|+.+.- .. ..  ..|-. +...++.+++.+++.   ...++|+.|||.||..||...-
T Consensus        12 ~~~~m~eam~~a~-~~-~~--~~YG~D~~~~~~e~~~ae~~g---~~a~~Fv~sGT~aN~lal~~~~   71 (342)
T COG2008          12 PTPEMREALAAAN-AV-GD--DVYGEDPTTNALEQRIAELFG---KEAALFVPSGTQANQLALAAHC   71 (342)
T ss_pred             CCHHHHHHHHhcc-cc-CC--CCCCCCHHHHHHHHHHHHHhC---CceEEEecCccHHHHHHHHHhc
Confidence            4799999987542 11 11  23443 445678888888875   4689999999999999998554

>TIGR02006 IscS cysteine desulfurase IscS

Probab=89.41  E-value=2.1  Score=36.83  Aligned_cols=65  Identities=11%  Similarity=0.018  Sum_probs=41.9

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCC-------hHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHh
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVY-------EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR   71 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~-------~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~   71 (158)
                      -++.+.+++.+.++... .+.....+       +...++.++|.++..-+ .+.+.|+++||||++.+++....
T Consensus        15 ~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~v~~~~g~t~a~~~~l~~l~~   86 (402)
T TIGR02006        15 VDPRVAEKMMPYLTEKF-GNPASRSHSFGWEAEEAVENARNQVAELIGAD-SREIVFTSGATESNNLAIKGIAH   86 (402)
T ss_pred             CCHHHHHHHHHHHHhcC-CCCChhhhHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCCHHHHHHHHHHHHHH
Confidence            36889999988775432 11111111       22334556677776533 46799999999999999987653

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=89.24  E-value=2  Score=36.98  Aligned_cols=64  Identities=9%  Similarity=-0.019  Sum_probs=43.2

Q ss_pred             CCCcHHHHHHHHHHHHhcCcc----CCCC-CCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            3 RWFQIELARDMGYTAARFGHV----MFPE-NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         3 Gh~hP~Iv~Av~eQl~~l~~~----~~~~-~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      |--.+++++|+.+........    +... ...+...++-+++++...   .+.+.|+++|++|+++|++..
T Consensus        30 ~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g---~~~~~~~~g~t~a~~~al~~l   98 (387)
T PRK09331         30 GILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLG---MDEARVTHGAREGKFAVMHSL   98 (387)
T ss_pred             CCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhC---CCcEEEeCCHHHHHHHHHHHh
Confidence            566788999998876432111    0111 123446677788888874   467889999999999998755

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=89.11  E-value=2.3  Score=36.23  Aligned_cols=57  Identities=11%  Similarity=-0.008  Sum_probs=39.9

Q ss_pred             CcHHHHHHHHHHHHhcC------ccCCCCC-----CChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHH
Q 031493            5 FQIELARDMGYTAARFG------HVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI   64 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~------~~~~~~~-----~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~   64 (158)
                      .||++.+++.+++++..      -.+..+.     .++...++.++|+++++   .+.+++.+||+.||-.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~---~~~~l~~~sG~~a~~~   86 (370)
T PRK05937         19 RSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHG---APEAFIVPSGYMANLG   86 (370)
T ss_pred             CCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhC---CCeEEEECChHHHHHH
Confidence            48999999999987751      0111111     34567888889999885   3467888999999853

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=88.92  E-value=1.8  Score=36.54  Aligned_cols=64  Identities=9%  Similarity=0.001  Sum_probs=43.3

Q ss_pred             CCCcHHHHHHHHHHHHhcCccCC----CC-CCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            3 RWFQIELARDMGYTAARFGHVMF----PE-NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         3 Gh~hP~Iv~Av~eQl~~l~~~~~----~~-~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      |+-.|++++++.+.........+    .. ...+...++-+++++..+   .+.++++++|+||++.+++..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g---~~~i~~~~g~t~al~~~l~~~   79 (361)
T cd06452          11 GRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLG---MDEARVTPGAREGKFAVMHSL   79 (361)
T ss_pred             CCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcC---CceEEEeCCHHHHHHHHHHHh
Confidence            56778888888766532111110    01 123456788888888874   578999999999999988754

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PLN02651 cysteine desulfurase

Probab=88.90  E-value=1.5  Score=37.17  Aligned_cols=65  Identities=8%  Similarity=0.001  Sum_probs=41.7

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCC--C-----CChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHh
Q 031493            5 FQIELARDMGYTAARFGHVMFPE--N-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR   71 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~--~-----~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~   71 (158)
                      -.+++.+++.+++.... .....  .     ..+...++.++|.++...+ .+.+.|+++||||+..+++.+..
T Consensus        11 ~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~v~~t~~~t~a~~~~l~~~~~   82 (364)
T PLN02651         11 IDPRVLDAMLPFLIEHF-GNPHSRTHLYGWESEDAVEKARAQVAALIGAD-PKEIIFTSGATESNNLAIKGVMH   82 (364)
T ss_pred             CCHHHHHHHHHHHHhCC-CCCChhhhHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCCHHHHHHHHHHHHHH
Confidence            35788899888765321 11000  0     0122445667777776533 45799999999999999988754

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=87.57  E-value=2.1  Score=36.77  Aligned_cols=56  Identities=16%  Similarity=0.176  Sum_probs=42.3

Q ss_pred             cHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .|++.+|+++.++.+  .    -..+...++.+++++...   .+.++++++|++|+.+|++..-
T Consensus        26 ~~~v~~a~~~~~~~~--~----~~~~~~~~~~~~~a~~~g---~~~~~~~~g~t~al~~al~al~   81 (363)
T TIGR01437        26 SDEVADAQKRGAQNY--F----EIKELVNKTGEYIANLLG---VEDAVIVSSASAGIAQSVAAVI   81 (363)
T ss_pred             CHHHHHHHHHHHhcC--C----CHHHHHHHHHHHHHHhhC---CCeEEEEcCHHHHHHHHHHHHh
Confidence            689999999887542  1    123456677788888764   4578999999999999998663

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=87.47  E-value=1.8  Score=36.01  Aligned_cols=58  Identities=10%  Similarity=0.106  Sum_probs=38.5

Q ss_pred             cHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      +|++++|++++++....     +..+...++-+.+++...-+ .+.+.+++++++++..+++..
T Consensus        34 ~~~~~~a~~~~~~~~~~-----y~~~~~~~lr~~ia~~~~~~-~~~i~~~~G~~~~l~~~~~~l   91 (346)
T TIGR01141        34 PPKAKEALRAEADKLHR-----YPDPDPAELKQALADYYGVD-PEQILLGNGSDEIIELLIRAF   91 (346)
T ss_pred             CHHHHHHHHHhHHHhhc-----CCCCCHHHHHHHHHHHhCcC-hHHEEEcCCHHHHHHHHHHHh
Confidence            68999999988754321     22222245556666665422 467999999999998887654

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=87.24  E-value=1.6  Score=38.24  Aligned_cols=42  Identities=14%  Similarity=0.010  Sum_probs=34.6

Q ss_pred             CCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493           26 PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus        26 ~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      ..+.++...+|.++|+++.+   ...+.+++||++|+.++++...
T Consensus        52 sr~~~p~~~~le~~lA~l~g---~~~~v~~~sG~~Ai~~al~~l~   93 (418)
T TIGR01326        52 SRLMNPTTDVLEQRIAALEG---GVAALAVASGQAAITYAILNLA   93 (418)
T ss_pred             ECCCChhHHHHHHHHHHHhC---CCeEEEEccHHHHHHHHHHHHh
Confidence            35677888899999999875   3578889999999999997553

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=87.08  E-value=0.9  Score=38.34  Aligned_cols=59  Identities=19%  Similarity=0.191  Sum_probs=41.7

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCC-ChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHh
Q 031493            5 FQIELARDMGYTAARFGHVMFPENV-YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR   71 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~-~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~   71 (158)
                      .||+|.+|+.+. . ...-   .|. .+...+|.+++.++++   .+.+.|+.||+-||-.|++..-+
T Consensus         7 ~~~~m~~a~~~a-~-~gd~---~Yg~D~~~~~l~~~i~~l~g---~e~a~f~~sGT~An~~al~~~~~   66 (290)
T PF01212_consen    7 PTPAMLEAMAAA-N-VGDD---AYGEDPTTARLEERIAELFG---KEAALFVPSGTMANQLALRAHLR   66 (290)
T ss_dssp             S-HHEEHHHHHT-T-SB-C---CTTSSHHHHHHHHHHHHHHT---SSEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHcc-c-cCCc---ccCCChhHHHHHHHHHHHcC---CCEEEEeCCCChHHHHHHHHHHh
Confidence            478888888432 2 2221   343 4567789999999986   45778999999999999987663

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=86.72  E-value=6.7  Score=34.82  Aligned_cols=37  Identities=19%  Similarity=0.121  Sum_probs=29.9

Q ss_pred             hHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493           31 EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus        31 ~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      +...+|.++|++...   .+.+++++|||+|+..|++...
T Consensus        63 ~~~~~fe~~lA~~~g---~~~~v~~~sGt~al~~aL~al~   99 (438)
T PRK15407         63 RFNDAFEKKLAEFLG---VRYALLVNSGSSANLLAFSALT   99 (438)
T ss_pred             hhHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHHHh
Confidence            345678888888874   4679999999999999998764

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=86.31  E-value=2.4  Score=34.97  Aligned_cols=58  Identities=16%  Similarity=0.058  Sum_probs=40.5

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      .+|++.+++.+.+...   .. ....+...++.+.+.+...   .+.+.++++||||+..+++..
T Consensus        10 ~~~~v~~a~~~~~~~~---~~-~~~~~~~~~l~~~~a~~~g---~~~~~~~~~gt~a~~~~~~~l   67 (338)
T cd06502          10 PTPEMLEAMAAANVGD---DV-YGEDPTTAKLEARAAELFG---KEAALFVPSGTAANQLALAAH   67 (338)
T ss_pred             CCHHHHHHHHhcccCC---cc-cCCCHHHHHHHHHHHHHhC---CCeEEEecCchHHHHHHHHHh
Confidence            4788999988754221   11 1234556788888888775   246788899999999998754

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PLN02955 8-amino-7-oxononanoate synthase

Probab=85.90  E-value=3.9  Score=37.15  Aligned_cols=61  Identities=10%  Similarity=-0.078  Sum_probs=45.6

Q ss_pred             CcHHHHHHHHHHHHhcCccCC-C---CCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMF-P---ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKM   68 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~-~---~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKl   68 (158)
                      +||+|.+++.+.+++...... .   .-.+....+|-++|++...   .+.+.+.+||-.||-.++..
T Consensus       117 ~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g---~e~all~sSGy~AN~~~i~a  181 (476)
T PLN02955        117 SHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKK---KEDCLVCPTGFAANMAAMVA  181 (476)
T ss_pred             CCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHC---CCcEEEECChHHHHHHHHHH
Confidence            699999999999988653211 0   1123455678889999874   56788889999999999875

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=85.14  E-value=3.4  Score=35.41  Aligned_cols=40  Identities=18%  Similarity=0.001  Sum_probs=32.7

Q ss_pred             CCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493           27 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus        27 ~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      .+.++...+|.++|+++.+   .+.+++++||++|+..+++..
T Consensus        36 r~~~p~~~~le~~la~l~g---~~~a~~~~sG~~Ai~~~l~~l   75 (369)
T cd00614          36 RIGNPTVDALEKKLAALEG---GEAALAFSSGMAAISTVLLAL   75 (369)
T ss_pred             CCCChhHHHHHHHHHHHHC---CCCEEEEcCHHHHHHHHHHHH
Confidence            4567888899999999875   356778899999999999865

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PLN03032 serine decarboxylase; Provisional

Probab=84.91  E-value=1.8  Score=37.82  Aligned_cols=38  Identities=5%  Similarity=0.024  Sum_probs=27.5

Q ss_pred             HHHHHHHHhhcCCCCCCc--EEEeCChHHHHHHHHHHHHhc
Q 031493           34 LECAELLLQGVGKGWASR--AYFSDNGSTAIEIALKMAFRK   72 (158)
Q Consensus        34 ~~LAe~L~~~~P~~~l~~--v~f~~SGSEA~E~AlKlAR~~   72 (158)
                      .+..+.+++++..+ -+.  .+|+++|||||-.|++.||..
T Consensus        69 ~~v~~~ia~llg~~-~~~~~G~fTsGGTEaNl~al~~ar~~  108 (374)
T PLN03032         69 VGVLDWFARLWELE-KDEYWGYITTCGTEGNLHGILVGREV  108 (374)
T ss_pred             HHHHHHHHHHhCCC-CccCCEEEeCchHHHHHHHHHHHHHh
Confidence            44556666666432 233  489999999999999999953

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=84.84  E-value=3.4  Score=36.24  Aligned_cols=63  Identities=14%  Similarity=-0.005  Sum_probs=40.8

Q ss_pred             CCcHHHHHHHHHHH-HhcCccC-CCCC--CChHHHHHHH----HHHhhcCCCCCCcE-EEeCChHHHHHHHHHHH
Q 031493            4 WFQIELARDMGYTA-ARFGHVM-FPEN--VYEPALECAE----LLLQGVGKGWASRA-YFSDNGSTAIEIALKMA   69 (158)
Q Consensus         4 h~hP~Iv~Av~eQl-~~l~~~~-~~~~--~~~~~~~LAe----~L~~~~P~~~l~~v-~f~~SGSEA~E~AlKlA   69 (158)
                      |-||++.+|+.+.+ ++..... ...+  .++...+|-+    +++++..   .+.+ ++.+||+.||.+++..-
T Consensus        39 ~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g---~~~alv~~~SG~~A~~~~l~al  110 (416)
T PRK13034         39 FTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFG---CDYANVQPHSGSQANGAVYLAL  110 (416)
T ss_pred             CCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhC---CCceEEecCCcHHHHHHHHHHh
Confidence            45899999999885 5533211 0111  1455566666    8888774   3456 45699999999998643

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=84.84  E-value=3.4  Score=34.73  Aligned_cols=59  Identities=8%  Similarity=0.025  Sum_probs=38.2

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      .+|.+.+|+.++++.+.+.     +.....+|-+.+++...-. .+.++++++++||+..+++..
T Consensus        43 ~~~~v~~a~~~~~~~~~~~-----p~~g~~~lr~~ia~~~~~~-~~~i~~t~G~~~~l~~~~~~~  101 (359)
T PRK03158         43 PSPKVKEAIAAHLDELALY-----PDGYAPELRTKVAKHLGVD-EEQLLFGAGLDEVIQMISRAL  101 (359)
T ss_pred             CCHHHHHHHHHHHHHhhcC-----CCCcHHHHHHHHHHHhCCC-HHHEEECCCHHHHHHHHHHHH
Confidence            3789999999888764332     2222334555555554322 467999999999998776543

>PLN02721 threonine aldolase

Probab=84.09  E-value=3.8  Score=33.94  Aligned_cols=59  Identities=15%  Similarity=0.099  Sum_probs=40.4

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      -.|.+.+|+++.  ......  .+..+...+|-+.|++...   .+.+.+++|||+++..+++...
T Consensus        18 ~~~~~~~a~~~~--~~~~~~--~~~~~~~~~l~~~la~~~~---~~~~~~~~~Gs~a~~~~l~~~~   76 (353)
T PLN02721         18 PTDAMRAAMANA--EVDDDV--LGYDPTALRLEEEMAKIFG---KEAALFVPSGTMGNLISVLVHC   76 (353)
T ss_pred             CCHHHHHHHHhc--cCCCcc--cCCCHHHHHHHHHHHHHhC---CceeEEecCccHHHHHHHHHHc
Confidence            357888888653  222211  2335557788889998875   4567888999999988887643

>PRK02948 cysteine desulfurase; Provisional

Probab=83.64  E-value=7.3  Score=32.99  Aligned_cols=66  Identities=12%  Similarity=0.139  Sum_probs=41.4

Q ss_pred             CCcHHHHHHHHHHHHhcCccCCCCC-----CChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            4 WFQIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         4 h~hP~Iv~Av~eQl~~l~~~~~~~~-----~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .-.+.+.+++.+.++..........     ..+...++.+.|.+....+ .+.+.|+++++||+..+++...
T Consensus        11 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~i~~~~g~t~a~~~~~~~~~   81 (381)
T PRK02948         11 PMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGE-EQGIYFTSGGTESNYLAIQSLL   81 (381)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCcHHHHHHHHHHHHH
Confidence            3467899999887754221110011     1122345556677766433 4689999999999999988765

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=83.19  E-value=3.7  Score=36.28  Aligned_cols=40  Identities=13%  Similarity=0.014  Sum_probs=32.2

Q ss_pred             CCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493           27 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus        27 ~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      ...++...+|.++|+++.+   ...+++.+||++|++++++..
T Consensus        59 r~~~p~~~~le~~lA~l~g---~~~al~~~SG~~Ai~~al~al   98 (427)
T PRK05994         59 RITNPTNAVLEERVAALEG---GTAALAVASGHAAQFLVFHTL   98 (427)
T ss_pred             CCCCccHHHHHHHHHHHhC---CCcEEEEcCHHHHHHHHHHHH
Confidence            4556777889999999875   346888899999999999765

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=83.06  E-value=6.5  Score=32.99  Aligned_cols=63  Identities=22%  Similarity=0.165  Sum_probs=38.9

Q ss_pred             cHHHHHHHHHHHHhcC-ccCCCCCC-----ChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFG-HVMFPENV-----YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKM   68 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~-~~~~~~~~-----~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKl   68 (158)
                      .+.+.+++.+.+++.. ......+.     .+...++-+.|.+.+.....+.++|+++|++|++.++.-
T Consensus        13 p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~   81 (376)
T TIGR01977        13 PDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKG   81 (376)
T ss_pred             CHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHh
Confidence            3578888888776542 11111121     133456667777776432124799999999999988754

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PRK14012 cysteine desulfurase; Provisional

Probab=82.48  E-value=5.5  Score=34.25  Aligned_cols=65  Identities=12%  Similarity=-0.001  Sum_probs=39.9

Q ss_pred             CcHHHHHHHHHHHHhc-CccCCCCCC-------ChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARF-GHVMFPENV-------YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l-~~~~~~~~~-------~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      -++.+.+++.+.+... ...+.....       .+...++-++|++....+ .+.+.|++||+||++.+++...
T Consensus        15 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~-~~~v~~~~g~t~al~~~l~~l~   87 (404)
T PRK14012         15 VDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGAD-PREIVFTSGATESDNLAIKGAA   87 (404)
T ss_pred             CCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcC-cCeEEEeCCHHHHHHHHHHHHH
Confidence            3678888888876511 111110000       122344556677776533 4569999999999999998664

>PRK10534 L-threonine aldolase; Provisional

Probab=82.21  E-value=4.2  Score=33.75  Aligned_cols=56  Identities=14%  Similarity=-0.024  Sum_probs=40.7

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCC-CChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKM   68 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~-~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKl   68 (158)
                      -+|.+++|+.+..+..     ..| +.+...+|.++|.+...   .+.+.++++|++|+-.++..
T Consensus        12 p~~~~~~a~~~~~~~~-----~~Y~~~~~~~~L~~~la~~~g---~~~~~v~~~g~~a~~~~l~~   68 (333)
T PRK10534         12 PSRAMLEAMMAAPVGD-----DVYGDDPTVNALQDYAAELSG---KEAALFLPTGTQANLVALLS   68 (333)
T ss_pred             CCHHHHHHHHhccCCC-----cccCCCHHHHHHHHHHHHHhC---CCeEEEeCchHHHHHHHHHH
Confidence            4688888887643321     234 56677889999999864   56777889999998888864

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=81.56  E-value=5.9  Score=33.95  Aligned_cols=61  Identities=10%  Similarity=-0.048  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHhcCccCCCC----CCCh----HHHHHHHHHHhhcCCCCCCcEEE-eCChHHHHHHHHH
Q 031493            7 IELARDMGYTAARFGHVMFPE----NVYE----PALECAELLLQGVGKGWASRAYF-SDNGSTAIEIALK   67 (158)
Q Consensus         7 P~Iv~Av~eQl~~l~~~~~~~----~~~~----~~~~LAe~L~~~~P~~~l~~v~f-~~SGSEA~E~AlK   67 (158)
                      ..|++|+.+.+......+...    ...+    ...+.-++|.+++..+.-..|+| ..|||+|+|+|+.
T Consensus         5 ~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~   74 (349)
T TIGR01364         5 EEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPL   74 (349)
T ss_pred             HHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHH
Confidence            478888888876433211111    1122    23445566666654210234555 5679999999976

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>cd00609 AAT_like Aspartate aminotransferase family

Probab=81.12  E-value=5.6  Score=32.31  Aligned_cols=36  Identities=17%  Similarity=0.179  Sum_probs=24.4

Q ss_pred             HHHHHHHHhhcC--CCCCCcEEEeCChHHHHHHHHHHHH
Q 031493           34 LECAELLLQGVG--KGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus        34 ~~LAe~L~~~~P--~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .++++.|....+  .+ .+.++++++|++|++.+++...
T Consensus        43 ~~l~~~l~~~~~~~~~-~~~~~~~~~~t~a~~~~~~~~~   80 (350)
T cd00609          43 EAIAEWLGRRGGVDVP-PEEIVVTNGAQEALSLLLRALL   80 (350)
T ss_pred             HHHHHHHHHHhCCCCC-cceEEEecCcHHHHHHHHHHhC
Confidence            345554444321  12 4579999999999999998774

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=81.08  E-value=8.1  Score=33.54  Aligned_cols=61  Identities=11%  Similarity=0.099  Sum_probs=42.3

Q ss_pred             CcHHHHHHHHHHHHhcCccC---CCCC-CChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVM---FPEN-VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKM   68 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~---~~~~-~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKl   68 (158)
                      +||++++++.+++++.....   ...+ ......+|.++|+++..   -+..++.+||..|+-+++..
T Consensus        13 ~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g---~e~al~~~sG~~a~~~~i~~   77 (392)
T PLN03227         13 SSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLG---TESAILYSDGASTTSSTVAA   77 (392)
T ss_pred             CCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhC---CCcEEEecCcHHHHHHHHHH
Confidence            58999999999998743211   1112 23456788899998875   34667778998888877753

>PLN02263 serine decarboxylase

Probab=81.04  E-value=5.4  Score=36.22  Aligned_cols=40  Identities=8%  Similarity=0.037  Sum_probs=27.6

Q ss_pred             HHHHHHHHhhcCCCC-CCcEEEeCChHHHHHHHHHHHHhcc
Q 031493           34 LECAELLLQGVGKGW-ASRAYFSDNGSTAIEIALKMAFRKF   73 (158)
Q Consensus        34 ~~LAe~L~~~~P~~~-l~~v~f~~SGSEA~E~AlKlAR~~~   73 (158)
                      .++.+-+.+++..+. -..-+++++|||||-.||+.||.+.
T Consensus       136 ~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~  176 (470)
T PLN02263        136 VGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVF  176 (470)
T ss_pred             HHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhc
Confidence            345566666654220 1135789999999999999999853

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=81.03  E-value=8.8  Score=32.66  Aligned_cols=63  Identities=10%  Similarity=-0.060  Sum_probs=36.6

Q ss_pred             cHHHHHHHHHHHHhcCccCCC--CCCC------hHHHHHHHHHHhhcCCCCCCcEEEe-CChHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHVMFP--ENVY------EPALECAELLLQGVGKGWASRAYFS-DNGSTAIEIALKM   68 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~--~~~~------~~~~~LAe~L~~~~P~~~l~~v~f~-~SGSEA~E~AlKl   68 (158)
                      ++.|.+|+.+.+......+..  ...+      +...+.-++|.+++.-+.-..|.|+ +|||+|+|+++.-
T Consensus        11 p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~   82 (355)
T cd00611          11 PEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLN   82 (355)
T ss_pred             CHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHh
Confidence            578999998887542211110  1111      3344556667776642112456666 5699999998764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=80.32  E-value=8  Score=33.27  Aligned_cols=55  Identities=11%  Similarity=-0.065  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            7 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         7 P~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      ++-.+++.+.++.-..     ...+...+|-++|++...   .+.+.+++||++|+++|++..
T Consensus        14 ~~e~~~~~~~l~~~~~-----~~g~~~~~le~~la~~~g---~~~~v~~~sgt~al~lal~al   68 (379)
T PRK11658         14 DEELAAVKEVLRSGWI-----TTGPKNQALEQAFCQLTG---NQHAIAVSSATAGMHITLMAL   68 (379)
T ss_pred             HHHHHHHHHHHHcCCc-----cCCHhHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHHc
Confidence            3446666666553211     234556788888988875   456788899999999999754

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=80.30  E-value=5.4  Score=35.28  Aligned_cols=42  Identities=14%  Similarity=0.023  Sum_probs=32.9

Q ss_pred             CCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493           26 PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus        26 ~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      ....++...+|.++|+++.+   -..+.+++||++|++++++...
T Consensus        53 ~r~~~pt~~~Le~~lA~l~g---~~~~l~~ssG~~Ai~~al~al~   94 (425)
T PRK06084         53 TRIMNPTNDVLEQRVAALEG---GVGALAVASGMAAITYAIQTIA   94 (425)
T ss_pred             cCCCCchHHHHHHHHHHHhC---CCceeEehhHHHHHHHHHHHHh
Confidence            35567778899999999864   3456778999999999997553

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=80.23  E-value=7.2  Score=35.16  Aligned_cols=40  Identities=20%  Similarity=0.256  Sum_probs=27.7

Q ss_pred             HHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhccc
Q 031493           35 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS   74 (158)
Q Consensus        35 ~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~   74 (158)
                      ++..-|.+++..+.-..-.|+.+|||||..|+++||..+.
T Consensus       105 ~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~  144 (460)
T COG0076         105 RVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWR  144 (460)
T ss_pred             HHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHH
Confidence            3445555555332123468899999999999999997653

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=80.04  E-value=4.2  Score=35.87  Aligned_cols=53  Identities=13%  Similarity=-0.026  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHH
Q 031493            8 ELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKM   68 (158)
Q Consensus         8 ~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKl   68 (158)
                      +..+++.+.++.-..    . .-+...++-+.+++.++   ...+.-++||+.|.+.|+|.
T Consensus        16 ~e~~~v~~vl~sg~i----~-~G~~v~~FE~~~ae~~G---~k~ava~~sgT~AL~laL~a   68 (374)
T COG0399          16 EELAAVQEVLKSGWL----T-GGPFVRRFEQAFAEYLG---VKYAVAVSSGTAALHLALLA   68 (374)
T ss_pred             HHHHHHHHHHHcCCe----e-cChHHHHHHHHHHHHhC---CCeEEEecChHHHHHHHHHh
Confidence            344555555544221    1 14556678888888875   56888999999999999983

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	158
4a0g_A	831	Structure Of Bifunctional Dapa Aminotransferase-Dtb		1e-34
4a0f_A	831	Structure Of Selenomethionine Substituted Bifunctio		8e-34
3tft_A	457	Crystal Structure Of 7,8-Diaminopelargonic Acid Syn		7e-04
3lv2_A	462	Crystal Structure Of Mycobacterium Tuberculosis 7,8		7e-04
3bv0_A	437	Crystal Structure Of Plp Bound 7,8-Diaminopelargoni		7e-04

>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831

Iteration: 1
 Score =  142 bits (357), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 66/74 (89%), Positives = 69/74 (93%)
Query: 5   FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 64
           FQ ELAR+MGYTAARFGHVMFPENVYEPAL+CAELLL GVGKGWASR YFSDNGSTAIEI
Sbjct: 398 FQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEI 457
Query: 65  ALKMAFRKFSFDHD 78
           ALKMAFRKF  DH+
Sbjct: 458 ALKMAFRKFCVDHN 471

>pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional Dapa Aminotransferase-Dethiobiotin Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831

Iteration: 1
 Score =  139 bits (350), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 63/74 (85%), Positives = 66/74 (89%)
Query: 5   FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEI 64
           FQ ELAR+ GYTAARFGHV FPENVYEPAL+CAELLL GVGKGWASR YFSDNGSTAIEI
Sbjct: 398 FQAELAREXGYTAARFGHVXFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEI 457
Query: 65  ALKMAFRKFSFDHD 78
           ALK AFRKF  DH+
Sbjct: 458 ALKXAFRKFCVDHN 471

>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase (Bioa) From Mycobacterium Tuberculosis, Pre-Reaction Complex With A 3,6- Dihydropyrid-2-One Heterocycle Inhibitor Length = 457

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 22  HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR 71
           HVMF    +EPA   A+LL+     G  +  +FSD+GS ++E+A KMA +
Sbjct: 109 HVMFGGLTHEPAARLAKLLVDITPAGLDT-VFFSDSGSVSVEVAAKMALQ 157

>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis 7,8-Diaminopelargonic Acid Synthase In Complex With Substrate Analog Sinefungin Length = 462

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 22  HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR 71
           HVMF    +EPA   A+LL+     G  +  +FSD+GS ++E+A KMA +
Sbjct: 114 HVMFGGLTHEPAARLAKLLVDITPAGLDT-VFFSDSGSVSVEVAAKMALQ 162

>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid Synthase In Mycobacterium Tuberculosis Length = 437

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 22  HVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR 71
           HVMF    +EPA   A+LL+     G  +  +FSD+GS ++E+A KMA +
Sbjct: 89  HVMFGGLTHEPAARLAKLLVDITPAGLDT-VFFSDSGSVSVEVAAKMALQ 137

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	158
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	7e-21
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	8e-12
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	1e-11
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	8e-11
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	1e-06
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	2e-06
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	3e-06
3nui_A	478	Pyruvate transaminase; amino transferase, transfer	5e-06
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	1e-05
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	2e-05
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	3e-05
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	6e-05
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	7e-05
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	1e-04
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	1e-04
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	1e-04
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	5e-04
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	9e-04

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831

 Score = 87.3 bits (216), Expect = 7e-21
 Identities = 64/72 (88%), Positives = 67/72 (93%)

Query: 8   ELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK 67
           ELAR+MGYTAARFGHVMFPENVYEPAL+CAELLL GVGKGWASR YFSDNGSTAIEIALK
Sbjct: 401 ELAREMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALK 460

Query: 68  MAFRKFSFDHDV 79
           MAFRKF  DH+ 
Sbjct: 461 MAFRKFCVDHNF 472

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Length = 429

 Score = 61.0 bits (149), Expect = 8e-12
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 17  AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF 70
                HVMF    + PA+E    L+    +      + +D+GS A+E+A+KMA 
Sbjct: 72  IDAMSHVMFGGITHAPAIELCRKLVAMTPQPL-ECVFLADSGSVAVEVAMKMAL 124

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* Length = 457

 Score = 60.3 bits (147), Expect = 1e-11
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 17  AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF 70
                HVMF    +EPA   A+LL+     G     +FSD+GS ++E+A KMA 
Sbjct: 104 LRVMNHVMFGGLTHEPAARLAKLLVDITPAGL-DTVFFSDSGSVSVEVAAKMAL 156

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448

 Score = 58.0 bits (141), Expect = 8e-11
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 17  AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF 70
             +  H         PA + AE L+    K   +R ++SD+G+ A+EIALKMAF
Sbjct: 73  LGKIAHSTLLGMTNVPATQLAETLIDISPKK-LTRVFYSDSGAEAMEIALKMAF 125

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 16/64 (25%)

Query: 10  ARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWA---SRAYFSDNGSTAIEIAL 66
            + + Y      H        EPA++ AE L +     W       +FS++GS A E A 
Sbjct: 78  LQTLSYFPMSQSH--------EPAIKLAEKLNE-----WLGGEYVIFFSNSGSEANETAF 124

Query: 67  KMAF 70
           K+A 
Sbjct: 125 KIAR 128

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 17/53 (32%), Positives = 25/53 (47%)

Query: 17  AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 69
           A  F H  F    YE  ++ AELL          R    ++G+ A+E A+K+A
Sbjct: 93  ATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVA 145

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419

 Score = 44.9 bits (107), Expect = 3e-06
 Identities = 13/53 (24%), Positives = 26/53 (49%)

Query: 17  AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 69
             +  H    +    P LE A+ L+      +  + +FS++G+ AIE ++K+ 
Sbjct: 72  MQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVV 124

>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478

 Score = 44.1 bits (105), Expect = 5e-06
 Identities = 8/40 (20%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 31  EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF 70
           +  +  +E L++      + R +++++GS A +  +KM +
Sbjct: 105 DQTVMLSEKLVEVSPFD-SGRVFYTNSGSEANDTMVKMLW 143

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439

 Score = 42.5 bits (101), Expect = 1e-05
 Identities = 14/53 (26%), Positives = 19/53 (35%)

Query: 17  AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 69
           AA             PA+  AE LL         + +F  +GS A E A +  
Sbjct: 72  AANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAI 124

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 17  AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKF--- 73
             +  H  F    YEP LE  E++ Q V   +A +      GS A+E A+K+A R     
Sbjct: 70  LKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA-RAATKR 128

Query: 74  ----SFDH 77
               +F  
Sbjct: 129 SGTIAFSG 136

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 9/57 (15%)

Query: 15  YTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR 71
               ++GH          + + AE +         +  +F+D+GS     A+KM   
Sbjct: 85  SPGFQYGH--------PLSFQLAEKITDLTPGN-LNHVFFTDSGSECALTAVKMVRA 132

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451

 Score = 41.0 bits (97), Expect = 6e-05
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 17  AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 69
              F H  F    YE  +   E L +        R+   ++GS A+E A+K+A
Sbjct: 90  VGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIA 142

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460

 Score = 40.7 bits (96), Expect = 7e-05
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 31  EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF 70
           E ++  A++++    KG  SR YF  +GS A E  +K+ +
Sbjct: 95  EASITLAKMIIDRAPKG-MSRVYFGLSGSDANETNIKLIW 133

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 17  AARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 69
           A +  H +F E +  P ++ A  L      G   RA     G+ + E A++MA
Sbjct: 72  AGKLDH-LFSEMLSRPVVDLATRLANITPPG-LDRALLLSTGAESNEAAIRMA 122

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 7/67 (10%)

Query: 17  AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 74
           A     +             E    L   +     +R +  ++G+ A E ALK A R  +
Sbjct: 74  AETLMAM---PQTLPTPMRGEFYRTLTAILPPE-LNRVFPVNSGTEANEAALKFA-RAHT 128

Query: 75  FDHDVLV 81
                + 
Sbjct: 129 GRKKFVA 135

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 17  AARFGHVMFP---ENVY-EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR 71
           A      +      +VY        E   + +G       +F + G+ A+E ALK AF 
Sbjct: 83  AELMQAALNKPSNSDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFD 141

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430

 Score = 37.9 bits (89), Expect = 5e-04
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 31  EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA 69
           +   E A  L + VG     R +    GS A E A+K+A
Sbjct: 72  DVLEEYAGRLARFVGLPT-FRFWAVSGGSEATESAVKLA 109

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420

 Score = 37.5 bits (88), Expect = 9e-04
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 9/63 (14%)

Query: 17  AARFGHVMFPENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFS 74
                H     NV+  EPAL     L   +   +A R  F ++G+ A E A K+A R ++
Sbjct: 86  GETLWHT---SNVFTNEPALRLGRKL---IDATFAERVLFMNSGTEANETAFKLA-RHYA 138

Query: 75  FDH 77
              
Sbjct: 139 CVR 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	158
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.92
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.89
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.86
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.83
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.71
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.7
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.67
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.67
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.66
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.63
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.62
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.61
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.56
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.55
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.31
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.53
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.51
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.5
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.49
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.46
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.43
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.42
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.39
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.39
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.35
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.34
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.33
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.31
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.25
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.23
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.22
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.18
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.15
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.11
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	98.95
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	98.81
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	98.65
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	98.6
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	98.42
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	98.07
1svv_A	359	Threonine aldolase; structural genomics, structura	97.79
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	97.53
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	97.47
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	97.45
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	97.42
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	97.41
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	97.31
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	97.22
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	97.22
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	97.22
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	97.19
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	97.19
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	97.18
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	97.15
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	97.13
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	97.1
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	97.09
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	97.09
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	97.08
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	97.06
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	97.05
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	97.04
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	97.04
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	97.02
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	97.01
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	97.0
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	96.99
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	96.94
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	96.94
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	96.89
2fnu_A	375	Aminotransferase; protein-product complex, structu	96.86
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	96.83
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	96.83
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	96.82
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	96.82
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	96.8
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	96.75
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	96.73
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	96.73
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	96.73
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	96.71
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	96.69
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	96.67
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	96.67
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	96.64
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	96.63
1vp4_A	425	Aminotransferase, putative; structural genomics, j	96.62
3ele_A	398	Amino transferase; RER070207001803, structural gen	96.61
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	96.58
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	96.56
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	96.55
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	96.55
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	96.54
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	96.53
3nra_A	407	Aspartate aminotransferase; structural genomics, j	96.51
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	96.49
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	96.49
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	96.46
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	96.45
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	96.42
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	96.39
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	96.37
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	96.34
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	96.34
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	96.33
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	96.32
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	96.3
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	96.28
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	96.23
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	96.19
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	95.17
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	96.17
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	96.15
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	96.13
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	96.13
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	96.1
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	96.08
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	96.07
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	96.04
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	95.98
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	95.95
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	95.94
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	95.91
3pj0_A	359	LMO0305 protein; structural genomics, joint center	95.88
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	95.88
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	95.82
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	95.77
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	95.77
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	95.68
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	95.65
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	95.63
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	95.63
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	95.6
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	95.58
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	95.57
1iug_A	352	Putative aspartate aminotransferase; wild type, py	95.54
1o69_A	394	Aminotransferase; structural genomics, unknown fun	95.52
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	95.51
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	95.49
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	95.46
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	95.42
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	95.36
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	95.32
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	95.22
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	95.2
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	95.17
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	95.14
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	95.11
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	95.05
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	94.96
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	94.94
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	94.87
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	94.82
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	94.76
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	94.73
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	94.59
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	94.42
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	94.35
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	94.28
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	94.2
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	94.17
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	94.02
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	93.98
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	93.82
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	93.71
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	93.65
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	93.65
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	93.59
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	93.49
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	93.36
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	92.99
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	92.93
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	92.81
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	92.72
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	92.65
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	92.47
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	92.42
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	92.03
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	91.92
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	91.9
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	91.75
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	91.47
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	90.9
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	90.73
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	90.54
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	90.5
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	90.34
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	90.17
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	89.13
3rq1_A	418	Aminotransferase class I and II; structural genomi	89.11
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	88.7
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	87.1
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	86.44
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	85.81
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	84.87
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	84.52
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	84.28
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	82.72
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	82.4
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	81.76
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	81.05
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	80.93
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	80.29

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.92  E-value=1.1e-25  Score=197.98  Aligned_cols=126  Identities=18%  Similarity=0.163  Sum_probs=101.6

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccC-CCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVM-FPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDV   79 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~-~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~   79 (158)
                      .+||+||+|++|+++|++++.+.+ +..+.+++.++|||+|++++|.+ +++|||+||||||||+|||+||+|+. .+|+
T Consensus        80 ~lGh~~p~v~~Ai~~q~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~~-~~~v~f~~sGsEA~e~AiKlAr~~~~-~~g~  157 (473)
T 4e3q_A           80 VAGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFD-SGRVFYTNSGSEANDTMVKMLWFLHA-AEGK  157 (473)
T ss_dssp             TTCSCCHHHHHHHHHHHHHCCCCCCCTTEEEHHHHHHHHHHHHHSSCS-SCEEEEESSHHHHHHHHHHHHHHHHH-HTTC
T ss_pred             hccCCCHHHHHHHHHHHHhcccccccccccCHHHHHHHHHHHhhCCCC-ccEEEEeCchHHHHHHHHHHHHHHHH-hcCC
Confidence            479999999999999999998753 22456899999999999999987 89999999999999999999998743 3454


Q ss_pred             cccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC-cccccccccccccccccCCcccC
Q 031493           80 LVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT-LEEAFFWTLLQFSCTTANGFFPY  150 (158)
Q Consensus        80 ~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~  150 (158)
                        + .|         .+||+          |+++|||+|.+++|.++. +...+.++...+...+.++++++
T Consensus       158 --~-~r---------~~ii~----------~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~  207 (473)
T 4e3q_A          158 --P-QK---------RKILT----------RWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRY  207 (473)
T ss_dssp             --T-TC---------CEEEE----------ETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHH
T ss_pred             --C-Cc---------ceEEE----------eeceECCCccccccccccccccccCCCCCcccccCCCccccc
Confidence              1 23         38999          999999999998887664 45566676666666666555543

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.89  E-value=1.4e-23  Score=183.86  Aligned_cols=97  Identities=20%  Similarity=0.102  Sum_probs=84.9

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+..+..++++...+|||+|++++|.+.+++|+|+||||||||+|||+||+++    |+ 
T Consensus        77 ~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t----~r-  151 (456)
T 4atq_A           77 SVGASDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLAT----GR-  151 (456)
T ss_dssp             TTCTTCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH----CC-
T ss_pred             hcCCCCHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhh----cC-
Confidence            4899999999999999999988765566789999999999999986447899999999999999999999874    33 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                                    .+||+          |+++|||+|.+++|..+
T Consensus       152 --------------~~ii~----------~~~~yHG~t~~als~t~  173 (456)
T 4atq_A          152 --------------DAVVA----------FDHAYHGRTNLTMALTA  173 (456)
T ss_dssp             --------------CEEEE----------ETTCCCCSSHHHHHHCC
T ss_pred             --------------CeEEE----------EecccCCcccccccccc
Confidence                          27999          99999999999877554

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.86  E-value=1.8e-22  Score=187.82  Aligned_cols=108  Identities=64%  Similarity=0.926  Sum_probs=88.2

Q ss_pred             CCCCC-cHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCc
Q 031493            1 MFRWF-QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDV   79 (158)
Q Consensus         1 ~~Gh~-hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~   79 (158)
                      .+||+ ||+|++|+++|++++.|+++..+.++++++|||+|++++|.+++++|||+||||||||.|||||+++|+..+|.
T Consensus       393 ~lGh~~~p~i~~Ai~~Q~~~l~h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~  472 (831)
T 4a0g_A          393 GPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNF  472 (831)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHSSCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCCCCCCHHHHHHHHHHHhhcccccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCC
Confidence            37999 99999999999999998765567899999999999999985547899999999999999999995434434443


Q ss_pred             ccc-----ccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           80 LVD-----FLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        80 ~~~-----~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                      ..+     +.|         .+||+          ++++|||+|+|++|.++.
T Consensus       473 ~~~~~~~~~~r---------~~iI~----------~~~syHG~T~gals~tg~  506 (831)
T 4a0g_A          473 CEATEEEKHIV---------VKVIA----------LRGSYHGDTLGAMEAQAP  506 (831)
T ss_dssp             ---------CC---------EEEEE----------ETTCCCCSSHHHHHTSCC
T ss_pred             CccccccccCc---------cEEEE----------ecCCcccCceeeeeccCc
Confidence            100     012         48999          999999999998887663

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.83  E-value=1.2e-20  Score=165.62  Aligned_cols=100  Identities=14%  Similarity=0.045  Sum_probs=82.3

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      ++||+||+|++|+++|+++..+.   ..+++...+|+|+|++..| + +++|+|+||||||||.|||+||+++    |+ 
T Consensus       100 ~lGH~hp~v~~Av~~q~~~~~~~---~~~~~~~~~lae~l~~~~p-~-~~~v~f~~SGsEA~e~AiklAr~~t----gr-  169 (454)
T 4ao9_A          100 VYGHSAPEIRDAVIEAMQGGINL---TGHNLLEGRLARLICERFP-Q-IEQLRFTNSGTEANLMALTAALHFT----GR-  169 (454)
T ss_dssp             TTCSCCHHHHHHHHHHHHTCSCC---CSEESSHHHHHHHHHHHST-T-CSEEEEESSHHHHHHHHHHHHHHHH----TC-
T ss_pred             cccCCCHHHHHHHHHHHhcCCCc---cCCcHHHHHHHHHHHHhCC-C-CCEEEEeCchHHHHHHHHHHHHhcc----cC-
Confidence            48999999999999999886553   3356677899999999988 4 8999999999999999999999874    43 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCCccccccc
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGTLEEAFFW  134 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~~~~~~~~  134 (158)
                                    .+||+          |.++|||.|.++++..+...-++++
T Consensus       170 --------------~~ii~----------~~~~yHG~t~~~~~~~~~~~~~~~~  199 (454)
T 4ao9_A          170 --------------RKIVV----------FSGGYHGGVLGFGARPSPTTVPFDF  199 (454)
T ss_dssp             --------------CEEEE----------ETTCBCSTTCBBSSSBCTTSCCSEE
T ss_pred             --------------CeEEE----------EeCCcCCccccccccccCccCCCCc
Confidence                          27999          9999999999987766543333333

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.71  E-value=4e-17  Score=141.81  Aligned_cols=103  Identities=17%  Similarity=0.036  Sum_probs=85.3

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.....+.++...+|+++|++..|.+ +++|+|+||||||||.|||++|+++. .+|. 
T Consensus        67 ~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~~~Aik~a~~~~~-~~g~-  143 (476)
T 3i5t_A           67 QVGYGRREIVDAMAHQAMVLPYASPWYMATSPAARLAEKIATLTPGD-LNRIFFTTGGSTAVDSALRFSEFYNN-VLGR-  143 (476)
T ss_dssp             TTCBCCHHHHHHHHHHHHHCCCCCTTTCBCHHHHHHHHHHHTTSSTT-CCEEEEESSHHHHHHHHHHHHHHHHH-HTTC-
T ss_pred             cCCCCCHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHhcCCCC-cCEEEEeCchHHHHHHHHHHHHHHHH-hcCC-
Confidence            38999999999999999998764322567899999999999999866 88999999999999999999998643 3343 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                       + .+         .+||.          +.++|||.|.++++..+.
T Consensus       144 -~-~~---------~~vi~----------~~~~yHg~~~~~~~~~~~  169 (476)
T 3i5t_A          144 -P-QK---------KRIIV----------RYDGYHGSTALTAACTGR  169 (476)
T ss_dssp             -T-TC---------CEEEE----------ETTCCCCSSHHHHHTCCC
T ss_pred             -C-CC---------CEEEE----------EcCCcCcCChhhccccCC
Confidence             1 22         37999          999999999998776653

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.70  E-value=1.4e-17  Score=144.83  Aligned_cols=103  Identities=17%  Similarity=0.109  Sum_probs=84.8

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCc-cCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCc
Q 031493            1 MFRWFQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDV   79 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~-~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~   79 (158)
                      .+||+||+|++|+++|++++.+ .....+.++...+|+++|++..|.+ .++|+|+|||+||||+|+|+||+++. .+|+
T Consensus        68 ~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~lae~l~~~~~~~-~~~v~~~~sGseA~~~aik~a~~~~~-~~g~  145 (472)
T 3hmu_A           68 NIGYGRDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAPGD-LNHVFFAGGGSEANDTNIRMVRTYWQ-NKGQ  145 (472)
T ss_dssp             TTCBCCHHHHHHHHHHHHHCSCCCSSSSEECHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHHHHHHH-HTTC
T ss_pred             cCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHHHHHHH-hcCC
Confidence            3899999999999999999773 2333567889999999999999866 78999999999999999999998643 2343


Q ss_pred             cccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           80 LVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        80 ~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                        + .+         .+||.          +.++|||.|.++++..+.
T Consensus       146 --~-~~---------~~ii~----------~~~~yHg~t~~~~~~~~~  171 (472)
T 3hmu_A          146 --P-EK---------TVIIS----------RKNAYHGSTVASSALGGM  171 (472)
T ss_dssp             --T-TC---------CEEEE----------ETTCCCCSSHHHHHHSCC
T ss_pred             --C-CC---------CEEEE----------EcCcCCCccHHhhhccCC
Confidence              1 22         37999          999999999998776653

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.67  E-value=1.3e-16  Score=136.98  Aligned_cols=96  Identities=18%  Similarity=0.091  Sum_probs=81.2

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCccc
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLV   81 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~   81 (158)
                      +||+||+|++|+.+|++++.+.....+.++...+|+++|++..|....++|+|+||||||||+|+|+||++.    |+  
T Consensus        75 lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~----g~--  148 (451)
T 3oks_A           75 VGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHT----HK--  148 (451)
T ss_dssp             TCTTCHHHHHHHHHHHTTCSCCTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHH----CC--
T ss_pred             cCCCCHHHHHHHHHHHHhcccccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhc----CC--
Confidence            799999999999999998876544456788899999999999875425799999999999999999999863    32  


Q ss_pred             cccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           82 DFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        82 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                                   .+||+          +.++|||.|.++++..+
T Consensus       149 -------------~~ii~----------~~~~yhG~~~~~~~~~~  170 (451)
T 3oks_A          149 -------------PAVVA----------FDHAYHGRTNLTMALTA  170 (451)
T ss_dssp             -------------CEEEE----------ETTCCCCSSHHHHHHCC
T ss_pred             -------------CeEEE----------EcCCcCCccHHHHHhcC
Confidence                         27999          99999999998776544

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.67  E-value=1.4e-16  Score=137.76  Aligned_cols=101  Identities=26%  Similarity=0.276  Sum_probs=84.5

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+..+..+.++...+|+++|++..|.+ .++|+|+|||+||||+|+|++++++.. +|. 
T Consensus        88 ~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~L~e~la~~~~~~-~~~v~~~~sGseA~~~Alk~a~~~~~~-~g~-  164 (457)
T 3tfu_A           88 IHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAG-LDTVFFSDSGSVSVEVAAKMALQYWRG-RGL-  164 (457)
T ss_dssp             TTCBTCHHHHHHHHHHHHHCSCCCSSSEECHHHHHHHHHHHHHSSTT-EEEEEEESSHHHHHHHHHHHHHHHHHH-TTC-
T ss_pred             ccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCC-cCEEEEeCcHHHHHHHHHHHHHHHHHh-cCC-
Confidence            38999999999999999998776544567899999999999999866 789999999999999999999986432 332 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNH  125 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~  125 (158)
                       + .+         .+||.          +.++|||.|.++++..
T Consensus       165 -~-g~---------~~ii~----------~~~~yhg~~~~~~~~~  188 (457)
T 3tfu_A          165 -P-GK---------RRLMT----------WRGGYHGDTFLAMSIC  188 (457)
T ss_dssp             -T-TC---------CEEEE----------ETTCCCCSSHHHHTTS
T ss_pred             -C-CC---------ceEEE----------EcCCcCCccHHhhccc
Confidence             1 22         37999          9999999999987764

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.66  E-value=3.4e-16  Score=134.65  Aligned_cols=96  Identities=21%  Similarity=0.139  Sum_probs=81.2

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCccc
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLV   81 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~   81 (158)
                      +||+||+|++|+.+|++++.++....+.++...+|+++|++..|....++|+|+||||||||+|||+||++.    |+  
T Consensus        78 lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~----g~--  151 (453)
T 4ffc_A           78 VGASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLAT----GR--  151 (453)
T ss_dssp             TCTTCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH----CC--
T ss_pred             CCCCCHHHHHHHHHHHHhccccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhc----CC--
Confidence            799999999999999999876544456788899999999999874324799999999999999999999763    32  


Q ss_pred             cccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           82 DFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        82 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                                   .+||.          +.++|||.|.++++..+
T Consensus       152 -------------~~ii~----------~~~~yhg~~~~~~~~~~  173 (453)
T 4ffc_A          152 -------------PAVVA----------FDNAYHGRTNLTMALTA  173 (453)
T ss_dssp             -------------CEEEE----------ETTCCCCSSHHHHHHCC
T ss_pred             -------------CEEEE----------EcCccCCcchHHHhhcC
Confidence                         26999          99999999998776544

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.63  E-value=1.1e-15  Score=131.14  Aligned_cols=101  Identities=16%  Similarity=0.165  Sum_probs=82.9

Q ss_pred             CCCCcHHHHHHHHHHHHhcCc-cCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            2 FRWFQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~-~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      +||+||+|++|+.+|++++.+ .....+.++...+|+++|.+..|.+ .++|+|+|||+||||+|+|++++++. .+|+ 
T Consensus        64 lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~ggseA~~~al~~~~~~~~-~~g~-  140 (459)
T 4a6r_A           64 VGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAG-FDRVFYTNSGSESVDTMIRMVRRYWD-VQGK-  140 (459)
T ss_dssp             TCBCCHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSCTT-CCEEEEESSHHHHHHHHHHHHHHHHH-HTTC-
T ss_pred             CCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCchHHHHHHHHHHHHHHHH-hcCC-
Confidence            799999999999999998763 2323567888999999999998866 78999999999999999999998643 2343 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                       + .+         .+||.          +.++|||.|.++++..+
T Consensus       141 -~-~~---------~~vi~----------~~~~yhg~~~~~~~~~~  165 (459)
T 4a6r_A          141 -P-EK---------KTLIG----------RWNGYHGSTIGGASLGG  165 (459)
T ss_dssp             -T-TC---------CEEEE----------ETTCCCCSSHHHHHHSC
T ss_pred             -C-CC---------CEEEE----------ECCCcCCccHHHHhhcC
Confidence             1 22         37999          99999999998776544

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.62  E-value=1e-15  Score=131.31  Aligned_cols=101  Identities=19%  Similarity=0.143  Sum_probs=82.7

Q ss_pred             CCCCcHHHHHHHHHHHHhcCcc-CCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            2 FRWFQIELARDMGYTAARFGHV-MFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~-~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      +||+||+|++|+.+|++++.+. ....+.++...+|+++|++..|.+ .++|+|+|||+||||+|+|++++++. .+|+ 
T Consensus        65 lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~gGseA~~~al~~~~~~~~-~~g~-  141 (460)
T 3gju_A           65 VGYGRQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAPKG-MSRVYFGLSGSDANETNIKLIWYYNN-VLGR-  141 (460)
T ss_dssp             TCBCCHHHHHHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHHHHHHH-HTTC-
T ss_pred             CCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhhCCCC-cCEEEEeCchHHHHHHHHHHHHHHHH-hcCC-
Confidence            7999999999999999987642 223567888999999999998766 78999999999999999999998643 2343 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                       + .+         .+||.          +.++|||.|.++++..+
T Consensus       142 -~-~~---------~~vi~----------~~~~yhg~~~~~~~~~~  166 (460)
T 3gju_A          142 -P-EK---------KKIIS----------RWRGYHGSGVMTGSLTG  166 (460)
T ss_dssp             -T-TC---------CEEEE----------ETTCCCCSSHHHHHHCC
T ss_pred             -C-CC---------CEEEE----------ECCCcCCCCHHHhhccC
Confidence             1 22         37999          99999999998776554

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.61  E-value=1e-15  Score=130.73  Aligned_cols=102  Identities=27%  Similarity=0.295  Sum_probs=70.6

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.....+.++...+|+++|++..|.+ .++|+|+|||+||||+|+|++++++. .+|+ 
T Consensus        57 ~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~v~~~~sGseA~~~al~~~~~~~~-~~G~-  133 (448)
T 3dod_A           57 VHGHRKKELDDAIKKQLGKIAHSTLLGMTNVPATQLAETLIDISPKK-LTRVFYSDSGAEAMEIALKMAFQYWK-NIGK-  133 (448)
T ss_dssp             SSCBSCHHHHHHHHHHHTTCSCCCCSSSEEHHHHHHHHHHHHHSCTT-EEEEEEESSHHHHHHHHHHHHHHHHH-HTTC-
T ss_pred             cCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCchHHHHHHHHHHHHHHHH-hhCC-
Confidence            37999999999999999987664334567788999999999998866 78999999999999999999998632 2342 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                       + .+ +        +||.          +.++|||.+.++++..+
T Consensus       134 -~-~~-~--------~vi~----------~~~~yhg~~~~~~~~~~  158 (448)
T 3dod_A          134 -P-EK-Q--------KFIA----------MKNGYHGDTIGAVSVGS  158 (448)
T ss_dssp             -T-TC-C--------EEEE----------EC---------------
T ss_pred             -C-CC-C--------EEEE----------ECCCCCCccHHHHHhcC
Confidence             1 12 2        7999          99999999999877655

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.56  E-value=1.6e-15  Score=131.68  Aligned_cols=114  Identities=17%  Similarity=0.054  Sum_probs=74.0

Q ss_pred             CCCCCcHHHHHHHHHHHHhc--CccC-CCCC-CChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhccccc
Q 031493            1 MFRWFQIELARDMGYTAARF--GHVM-FPEN-VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD   76 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l--~~~~-~~~~-~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~   76 (158)
                      .+||+||+|++|+.+|+++.  .+.. +... ..+...+++++|.+..|.+ .++|+|+||||||||+|||+||+++..+
T Consensus        76 ~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~~~~-~~~v~f~~sGseA~~~Aik~a~~~~~~~  154 (472)
T 1ohv_A           76 PIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKG-MSQLITMACGSCSNENAFKTIFMWYRSK  154 (472)
T ss_dssp             SSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTT-CCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHhCCCC-cCEEEEeCCchhHHHHHHHHHHHHhhhh
Confidence            38999999999999997543  2221 1111 2455666777777777766 7899999999999999999999764210


Q ss_pred             -CCccccccC-------CCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           77 -HDVLVDFLG-------KDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        77 -~g~~~~~~~-------~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                       +|.. ++.+       ....||.+..+||+          +.++|||.|.++++..+
T Consensus       155 ~~~~~-~~t~~~~~~~~~~~~~g~~r~~ii~----------~~~~yHg~~~~~~~~~g  201 (472)
T 1ohv_A          155 ERGQS-AFSKEELETCMINQAPGCPDYSILS----------FMGAFHGRTMGCLATTH  201 (472)
T ss_dssp             HHTTC-CCCHHHHHHHHTTCTTTSCCCEEEE----------ETTCCCCSSHHHHHHCC
T ss_pred             ccCcc-cccccccccccccccccCCCCeEEE----------ECCCcccccHHHHhcCC
Confidence             1100 0000       00000000037999          99999999999876654

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.55  E-value=1e-14  Score=124.24  Aligned_cols=101  Identities=23%  Similarity=0.175  Sum_probs=81.5

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+.+|++++.+ ....+.++...+|+++|++..|.+ .+ |+|++||+||||.|+|++++++. .+|+ 
T Consensus        62 ~lG~~~p~v~~A~~~~~~~~~~-~~~~~~~~~~~~la~~l~~~~~~~-~~-v~~~~ggseA~~~al~~~~~~~~-~~g~-  136 (452)
T 3n5m_A           62 NSGYGRKELAEAAYKQLQTLSY-FPMSQSHEPAIKLAEKLNEWLGGE-YV-IFFSNSGSEANETAFKIARQYYA-QKGE-  136 (452)
T ss_dssp             TTCBCCHHHHHHHHHHHTTCCC-CCTTSEEHHHHHHHHHHHHHHTSC-EE-EEEESSHHHHHHHHHHHHHHHHH-TTTC-
T ss_pred             cCCCCCHHHHHHHHHHHHhcCC-cccccCCHHHHHHHHHHHHhCCCC-ce-EEEeCchHHHHHHHHHHHHHHHH-hcCC-
Confidence            3799999999999999998766 333567888999999999998865 66 99999999999999999997632 2332 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                       + .+         .+||.          +.++|||.+.++++..+.
T Consensus       137 -~-~~---------~~vi~----------~~~~yhg~~~~~~~~~~~  162 (452)
T 3n5m_A          137 -P-HR---------YKFMS----------RYRGYHGNTMATMAATGQ  162 (452)
T ss_dssp             -T-TC---------CEEEE----------ETTCCCCSSHHHHHSCCC
T ss_pred             -C-CC---------CEEEE----------ECCCcCCCCHHHHhcCCc
Confidence             1 12         27999          999999999887776553

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.31  E-value=4.2e-16  Score=136.69  Aligned_cols=88  Identities=16%  Similarity=0.022  Sum_probs=76.0

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|+++...   ..++++...+|+|+|++..| + .++|+|+|||+||||+|||+||.++    |+ 
T Consensus       113 ~lGh~~p~V~~Av~~q~~~~~~---~~~~~~~~~~Lae~L~~~~p-~-~~~v~~~nSGseA~~~Aik~ar~~t----gr-  182 (465)
T 2yky_A          113 LFGHSHPVIRAAVERALAVGLN---LSTQTENEALFAEAVCDRFP-S-IDLVRFTNSGTEANLMALATATAIT----GR-  182 (465)
Confidence            3799999999999999988432   25678889999999999997 5 7899999999999999999999763    33 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccc
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFC  122 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~  122 (158)
                                    .+||.          +.++|||.|.+.+
T Consensus       183 --------------~~ii~----------~~~~yHG~~~~~~  200 (465)
T 2yky_A          183 --------------KTVLA----------FDGGYHGGLLNFA  200 (465)
Confidence                          26999          9999999999877

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.53  E-value=2.4e-14  Score=121.07  Aligned_cols=89  Identities=13%  Similarity=0.006  Sum_probs=70.6

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+.+|+++..+   ..++++...+|+++|++..| + .++++|+||||||||.|+|+||.+.    ++ 
T Consensus        66 ~lG~~~p~v~~A~~~~~~~~~~---~~~~~~~~~~la~~l~~~~~-~-~~~v~~~~sGsea~~~al~~a~~~~----~~-  135 (429)
T 4e77_A           66 ILGHNHPAIRQAVIEAVERGLS---FGAPTEMEVKMAQLVTDLVP-T-MDMVRMVNSGTEATMSAIRLARGYT----GR-  135 (429)
T ss_dssp             TTCBTCHHHHHHHHHHHTTCSC---CSSCCHHHHHHHHHHHHHST-T-CSEEEEESSHHHHHHHHHHHHHHHH----CC-
T ss_pred             ccCCCCHHHHHHHHHHHHhCcc---cCCCCHHHHHHHHHHHhhCC-C-CCEEEEeCcHHHHHHHHHHHHHHhh----CC-
Confidence            4899999999999999987643   24678889999999999987 4 7899999999999999999999762    22 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCccccc
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCS  123 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s  123 (158)
                                    .+||.          +.++|||.|.+.++
T Consensus       136 --------------~~ii~----------~~~~yhg~~~~~~~  154 (429)
T 4e77_A          136 --------------DKIIK----------FEGCYHGHADCLLV  154 (429)
T ss_dssp             --------------CEEEE----------ETTCCCC-------
T ss_pred             --------------CEEEE----------EcCccCCCChhhhh
Confidence                          26999          99999999986543

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.51  E-value=7.8e-14  Score=118.09  Aligned_cols=92  Identities=17%  Similarity=0.061  Sum_probs=78.1

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+.+|+++..+   ..++++...+|+++|++..| + .++++|+|||||||+.|+|+++.+.    |+ 
T Consensus        66 ~lG~~~p~v~~A~~~~~~~~~~---~~~~~~~~~~l~~~la~~~~-~-~~~v~~~~~Gsea~~~ai~~a~~~~----~~-  135 (429)
T 3k28_A           66 IHGHANDRVVEALKAVAERGTS---FGAPTEIENKLAKLVIERVP-S-IEIVRMVNSGTEATMSALRLARGYT----GR-  135 (429)
T ss_dssp             TTCBSCHHHHHHHHHHHHHCSC---CSSCCHHHHHHHHHHHHHST-T-CSEEEEESSHHHHHHHHHHHHHHHH----TC-
T ss_pred             ccCCCCHHHHHHHHHHHhhCcC---cCCCCHHHHHHHHHHHHhCC-C-CCEEEEeCChHHHHHHHHHHHHHhh----CC-
Confidence            3799999999999999988643   24678889999999999987 4 7899999999999999999999762    22 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                                    .+||.          +.++|||.+.+.++..+
T Consensus       136 --------------~~vi~----------~~~~yhg~~~~~~~~~g  157 (429)
T 3k28_A          136 --------------NKILK----------FIGCYHGHGDSLLIKAG  157 (429)
T ss_dssp             --------------CEEEE----------EETCCCCSCGGGCSSCC
T ss_pred             --------------CEEEE----------ECCCcCCCcHHHHHhcC
Confidence                          26899          99999999998776544

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.50  E-value=1e-13  Score=117.12  Aligned_cols=92  Identities=12%  Similarity=0.078  Sum_probs=76.8

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|+++...   ..++++...+|+++|++..| + .++++|++||||||+.|+|+++.+.    ++ 
T Consensus        68 ~lG~~~p~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~la~~~~-~-~~~v~~~~sGsea~~~ai~~a~~~~----~~-  137 (434)
T 3l44_A           68 ITGHAHPHITKAITTAAENGVL---YGTPTALEVKFAKMLKEAMP-A-LDKVRFVNSGTEAVMTTIRVARAYT----GR-  137 (434)
T ss_dssp             SSCBTCHHHHHHHHHHHHHCSC---CSSCCHHHHHHHHHHHHHCT-T-CSEEEEESSHHHHHHHHHHHHHHHH----CC-
T ss_pred             ccCCCCHHHHHHHHHHHHhCcC---CCCCCHHHHHHHHHHHHhCC-C-CCEEEEeCchHHHHHHHHHHHHHhh----CC-
Confidence            3799999999999999988532   25678889999999999987 5 7899999999999999999999752    22 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                                    .+||.          +.++|||.+.+.++..+
T Consensus       138 --------------~~vi~----------~~~~yhg~~~~~~~~~g  159 (434)
T 3l44_A          138 --------------TKIMK----------FAGCYHGHSDLVLVAAG  159 (434)
T ss_dssp             --------------CEEEE----------ETTCCCCSSGGGGBC--
T ss_pred             --------------CEEEE----------EcCccCCCcHHHHhhcC
Confidence                          26999          99999999988776544

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.49  E-value=1e-13  Score=118.84  Aligned_cols=104  Identities=21%  Similarity=0.140  Sum_probs=81.0

Q ss_pred             CCCCcHHHH-H-HHHH---HHHhcCccCCCCCCChHHHHHHHHHHhhcC-CCCCCcEEEeCChHHHHHHHHHHHHhcccc
Q 031493            2 FRWFQIELA-R-DMGY---TAARFGHVMFPENVYEPALECAELLLQGVG-KGWASRAYFSDNGSTAIEIALKMAFRKFSF   75 (158)
Q Consensus         2 ~Gh~hP~Iv-~-Av~e---Ql~~l~~~~~~~~~~~~~~~LAe~L~~~~P-~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~   75 (158)
                      +||+||+|+ + |+.+   |++++.+.+ ..+.++...+++++|++..+ .+ .++|+|++||+||||+|+|+||.++..
T Consensus        68 lG~~~p~v~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~la~~la~~~~~~~-~~~v~~~~~gseA~~~aik~a~~~~~~  145 (449)
T 2cjg_A           68 LGMNPPALVDDREFHAELMQAALNKPSN-SDVYSVAMARFVETFARVLGDPA-LPHLFFVEGGALAVENALKAAFDWKSR  145 (449)
T ss_dssp             SCBSCHHHHTCHHHHHHHHHHHTCCCCT-TTCCCHHHHHHHHHHHHHHCCTT-CCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCC-cccCCHHHHHHHHHHHHhcCCCC-CCEEEEeCchHHHHHHHHHHHHHHhcc
Confidence            799999999 9 9999   988876544 35678889999999999885 34 689999999999999999999976421


Q ss_pred             c---CCccccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           76 D---HDVLVDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        76 ~---~g~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                      .   .|..-+ .+         .+||.          +.++|||.|.++++..+.
T Consensus       146 ~~~~~~~~~~-~~---------~~Vi~----------~~~~yhg~~~~~~~~~~~  180 (449)
T 2cjg_A          146 HNQAHGIDPA-LG---------TQVLH----------LRGAFHGRSGYTLSLTNT  180 (449)
T ss_dssp             HHHHTTSCTT-CC---------CEEEE----------ETTCCCCSSTTGGGTCCS
T ss_pred             cccccccccC-CC---------CEEEE----------ECCCcCCcccchhhhcCC
Confidence            0   011000 01         37999          999999999998877653

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.46  E-value=2.7e-13  Score=114.25  Aligned_cols=91  Identities=14%  Similarity=0.056  Sum_probs=77.0

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCccc
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLV   81 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~   81 (158)
                      +||+||+|++|+.+|++++.+.   .+.++...+|+++|.+..| + .++++|+|||+||+++|+|+||.+.    |+  
T Consensus        66 lG~~~p~v~~a~~~~~~~~~~~---~~~~~~~~~la~~l~~~~~-~-~~~v~~~~ggsea~~~al~~a~~~~----~~--  134 (427)
T 3fq8_A           66 CGHAHPEVIEALKVAMEKGTSF---GAPCALENVLAEMVNDAVP-S-IEMVRFVNSGTEACMAVLRIMRAYT----GR--  134 (427)
T ss_dssp             TCBTCHHHHHHHHHHHTTCSCC---SSCCHHHHHHHHHHHHHST-T-CSEEEEESSHHHHHHHHHHHHHHHH----CC--
T ss_pred             cCCCCHHHHHHHHHHHHhCCCc---CCCCHHHHHHHHHHHHhCC-C-CCEEEEeCCHHHHHHHHHHHHHHhh----CC--
Confidence            7999999999999999886542   3478889999999999987 4 6899999999999999999999762    22  


Q ss_pred             cccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           82 DFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        82 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                                   .+||.          +.++|||.+.+.++..+
T Consensus       135 -------------~~vi~----------~~~~yhg~~~~~~~~~~  156 (427)
T 3fq8_A          135 -------------DKIIK----------FEGCYHGHADMFLVKAG  156 (427)
T ss_dssp             -------------CEEEE----------EETCCCCSCGGGCSSCC
T ss_pred             -------------CEEEE----------ECCCcCCCCHHHHHhcC
Confidence                         16898          99999999988766544

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.43  E-value=3.8e-13  Score=113.45  Aligned_cols=101  Identities=23%  Similarity=0.132  Sum_probs=71.6

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCccc
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLV   81 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~   81 (158)
                      +||+||+|++|+.+|++++.+.....+..+...+|+++|.+..+.+ .++|+|+|||+|||+.|+|++++++. .+|.  
T Consensus        43 lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~gg~ea~~~al~~~~~~~~-~~g~--  118 (430)
T 3i4j_A           43 IGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLP-TFRFWAVSGGSEATESAVKLARQYHV-ERGE--  118 (430)
T ss_dssp             TCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHHHHTTCT-TCEEEEESSHHHHHHHHHHHHHHHHH-HTTC--
T ss_pred             cCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCcHHHHHHHHHHHHHHHHH-hcCC--
Confidence            7999999999999999987765433567788899999999998766 78999999999999999999997632 2333  


Q ss_pred             cccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           82 DFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        82 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                      + .+         .+||.          +..+|||.+.++++..+
T Consensus       119 ~-~~---------~~vi~----------~~~~yhg~~~~~~~~~~  143 (430)
T 3i4j_A          119 P-GR---------FKVIT----------RVPSYHGASLGSLAASG  143 (430)
T ss_dssp             T-TC---------CEEEE----------ETTC-------------
T ss_pred             C-CC---------cEEEE----------EeCCcCCCCcccccccC
Confidence            1 12         27898          99999999988776554

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.42  E-value=3.7e-13  Score=114.92  Aligned_cols=100  Identities=16%  Similarity=0.015  Sum_probs=68.1

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCccc
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLV   81 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~   81 (158)
                      |||+||+|++|+.+|++++.+.+. .+.++...+|+++|++..+   .++|+|++||+|||++|+|+||++....+|.  
T Consensus        79 lgh~~p~v~~ai~~~~~~~~~~~~-~~~~~~~~~l~~~la~~~g---~~~v~~~~sGseA~~~al~~a~~~~~~~~g~--  152 (433)
T 1z7d_A           79 QGHCHPNILNAMINQAKNLTICSR-AFFSVPLGICERYLTNLLG---YDKVLMMNTGAEANETAYKLCRKWGYEVKKI--  152 (433)
T ss_dssp             TCBTCHHHHHHHHHHHTTCSCCCT-TSEEHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHHHHHHHTSCC--
T ss_pred             cCCCCHHHHHHHHHHHHhCCCccC-CcCCHHHHHHHHHHHhhcC---CCeEEEeCCHHHHHHHHHHHHHHHhhhccCC--
Confidence            799999999999999988765432 4567788999999999874   6799999999999999999999753222221  


Q ss_pred             cccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           82 DFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        82 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                      ++.| +        +||.          +.++|||.+.+.++..+
T Consensus       153 ~~gr-~--------~vi~----------~~~~yhg~~~~~~~~~g  178 (433)
T 1z7d_A          153 PENM-A--------KIVV----------CKNNFSGRTLGCISAST  178 (433)
T ss_dssp             CTTC-C--------EEEE----------ETTC-------------
T ss_pred             CCCC-C--------eEEE----------EeCCcCCcchhhhcccC
Confidence            1011 2        6899          99999999987666544

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.39  E-value=5.4e-13  Score=114.23  Aligned_cols=100  Identities=11%  Similarity=-0.081  Sum_probs=77.2

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCccc
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLV   81 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~   81 (158)
                      |||+||+|++|+.+|++++.+.+ ..+.++...+++++|++..+   .++++|++||+||+++|+|++|++....+|.  
T Consensus        90 lgh~~p~v~~Ai~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~g---~~~v~~~~sGseA~~~al~~~~~~~~~~~g~--  163 (439)
T 2oat_A           90 QGHCHPKIVNALKSQVDKLTLTS-RAFYNNVLGEYEEYITKLFN---YHKVLPMNTGVEAGETACKLARKWGYTVKGI--  163 (439)
T ss_dssp             TCBTCHHHHHHHHHHHTTCSCCC-TTSEESSHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred             CCCCCHHHHHHHHHHHHhcCccc-CccCCHHHHHHHHHHHHhcC---CCEEEEeCCHHHHHHHHHHHHHHHhhhccCC--
Confidence            79999999999999998876543 24556778899999999874   5799999999999999999999753222221  


Q ss_pred             cccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           82 DFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        82 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                      ++.+ +        +||.          +.++|||.+.+.++..+
T Consensus       164 ~~g~-~--------~vi~----------~~~~yhg~~~~~~~~~g  189 (439)
T 2oat_A          164 QKYK-A--------KIVF----------AAGNFWGRTLSAISSST  189 (439)
T ss_dssp             CTTC-C--------EEEE----------ETTCCCCSSHHHHTTCC
T ss_pred             CCCC-C--------eEEE----------EcCCCCCCCHhHhhcCC
Confidence            1011 2        6898          99999999987665544

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.39  E-value=1e-12  Score=111.16  Aligned_cols=95  Identities=19%  Similarity=0.173  Sum_probs=78.1

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCC-CcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWA-SRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l-~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      +||+||+|++|+.+|+++..+.....+.++...+|+++|.+..|.+ . ++++|++||+||++.|+|++|++.    ++ 
T Consensus        57 lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~~v~~~~ggsea~~~al~~~~~~~----~~-  130 (439)
T 3dxv_A           57 LGYGHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGE-GTHKIWFGHSGSDANEAAYRAIVKAT----GR-  130 (439)
T ss_dssp             TCBSCHHHHHHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHHTTTCT-TTEEEEEESSHHHHHHHHHHHHHHHH----SC-
T ss_pred             CCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCC-CCCEEEEeCCHHHHHHHHHHHHHHHh----CC-
Confidence            7999999999999999887655433556788899999999998755 6 699999999999999999999753    22 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                                    .+||.          +.++|||.+.+.++..+
T Consensus       131 --------------~~vi~----------~~~~yhg~~~~~~~~~~  152 (439)
T 3dxv_A          131 --------------SGVIA----------FAGAYHGCTVGSMAFSG  152 (439)
T ss_dssp             --------------CEEEE----------ETTCCCCSSHHHHCC--
T ss_pred             --------------CEEEE----------ECCCCCCCcHHHHhhcC
Confidence                          16888          99999999988766544

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.35  E-value=3.2e-12  Score=108.10  Aligned_cols=89  Identities=17%  Similarity=-0.003  Sum_probs=74.2

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCccc
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLV   81 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~   81 (158)
                      +||+||+|++|+.+|+++..+   ..+.++...+++++|++..| + .++++|++||+||+++|+|+||.+.    ++  
T Consensus        70 lG~~~~~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~la~~~~-~-~~~v~~~~sgseA~~~al~~ar~~~----~~--  138 (434)
T 2epj_A           70 LGHKHPRVLEAVEEALARGWL---YGAPGEAEVLLAEKILGYVK-R-GGMIRFVNSGTEATMTAIRLARGYT----GR--  138 (434)
T ss_dssp             TCBTCHHHHHHHHHHHHTCSC---CSSCCHHHHHHHHHHHHHHC-T-TCEEEEESSHHHHHHHHHHHHHHHH----CC--
T ss_pred             CCCCCHHHHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHHhCC-C-CCEEEEeCCHHHHHHHHHHHHHHhh----CC--
Confidence            799999999999999987432   24678888999999999987 5 7899999999999999999999753    22  


Q ss_pred             cccCCCcccccccceeEecccccccccCCCCCcCCcCcccccC
Q 031493           82 DFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSN  124 (158)
Q Consensus        82 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~  124 (158)
                                   .+||.          +.++|||.+.+.++.
T Consensus       139 -------------~~vi~----------~~~~yhg~~~~~~~~  158 (434)
T 2epj_A          139 -------------DLILK----------FDGCYHGSHDAVLVA  158 (434)
T ss_dssp             -------------CEEEE----------EETCCCCSSGGGSEE
T ss_pred             -------------CeEEE----------EcCCcCCCCHHHHHh
Confidence                         16888          999999999876543

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.34  E-value=6e-12  Score=106.14  Aligned_cols=88  Identities=14%  Similarity=0.004  Sum_probs=73.8

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCccc
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLV   81 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~   81 (158)
                      +||+||+|++|+.+|+++..+   .++.++...+|+++|++..| + .++|+|++||+||+++|+|+||.+.    ++  
T Consensus        66 lG~~~p~v~~a~~~~~~~~~~---~~~~~~~~~~l~~~l~~~~~-~-~~~v~~~~~g~ea~~~al~~ar~~~----~~--  134 (424)
T 2e7u_A           66 LGHAHPKVLARVRETLERGLT---FGAPSPLEVALAKKVKRAYP-F-VDLVRFVNSGTEATMSALRLARGYT----GR--  134 (424)
T ss_dssp             TCBTCHHHHHHHHHHHHTCSC---CSSCCHHHHHHHHHHHHHCT-T-CCEEEEESSHHHHHHHHHHHHHHHH----CC--
T ss_pred             cCCCCHHHHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHHhCC-C-CCEEEEeCCHHHHHHHHHHHHHHhh----CC--
Confidence            699999999999999987432   24677888999999999987 5 7899999999999999999999763    22  


Q ss_pred             cccCCCcccccccceeEecccccccccCCCCCcCCcCccccc
Q 031493           82 DFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCS  123 (158)
Q Consensus        82 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s  123 (158)
                                   .+||.          +.++|||.+.+.++
T Consensus       135 -------------~~vi~----------~~~~yhg~~~~~~~  153 (424)
T 2e7u_A          135 -------------PYIVK----------FRGNYHGHADGLLV  153 (424)
T ss_dssp             -------------CEEEE----------ETTCCCCCCGGGSE
T ss_pred             -------------CEEEE----------ECCCcCCCcHHHHH
Confidence                         16888          99999999987654

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.33  E-value=5.6e-12  Score=106.18  Aligned_cols=93  Identities=20%  Similarity=0.248  Sum_probs=77.2

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCccc
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLV   81 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~   81 (158)
                      +||+||+|++|+.+|+++..+.. ..+.++...+++++|++..|.+ .++|+|++||+||++.|+|+++.+.    |+  
T Consensus        57 lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~gg~ea~~~a~~~~~~~~----~~--  128 (433)
T 1zod_A           57 LGHCHPEIVSVIGEYAGKLDHLF-SEMLSRPVVDLATRLANITPPG-LDRALLLSTGAESNEAAIRMAKLVT----GK--  128 (433)
T ss_dssp             TCBTCHHHHHHHHHHHHHCCCCC-TTCCCHHHHHHHHHHHHHSCTT-CCEEEEESCHHHHHHHHHHHHHHHH----TC--
T ss_pred             cCCCCHHHHHHHHHHHHhCcccc-cccCCHHHHHHHHHHHHhCCCC-cCEEEEeCchHHHHHHHHHHHHHhh----CC--
Confidence            79999999999999998875533 3667888899999999998755 6899999999999999999998642    22  


Q ss_pred             cccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCC
Q 031493           82 DFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNH  125 (158)
Q Consensus        82 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~  125 (158)
                                   .+||.          +..+|||.+.++++..
T Consensus       129 -------------~~vi~----------~~~~yhg~~~~~~~~~  149 (433)
T 1zod_A          129 -------------YEIVG----------FAQSWHGMTGAAASAT  149 (433)
T ss_dssp             -------------CEEEE----------ETTCCCCSSHHHHHTC
T ss_pred             -------------CeEEE----------ECCCcCCCChhHHhhc
Confidence                         16898          9999999998766543

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.31  E-value=6.8e-12  Score=104.30  Aligned_cols=97  Identities=20%  Similarity=0.201  Sum_probs=78.5

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCccc
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLV   81 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~   81 (158)
                      +||+||+|++|+.+|++++.+.. ..+.++...+++++|.+..+   .++++|++||+|||+.|+|++++++.. .|.  
T Consensus        50 lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~~---~~~v~~~~gg~ea~~~al~~~~~~~~~-~g~--  122 (395)
T 3nx3_A           50 LGYNHAKFNAKIKAQVDKLLHTS-NLYYNENIAAAAKNLAKASA---LERVFFTNSGTESIEGAMKTARKYAFN-KGV--  122 (395)
T ss_dssp             TCBSCHHHHHHHHHHHTTCSCCC-TTSBCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHHHHHHH-TTC--
T ss_pred             CCCCCHHHHHHHHHHHHhccccc-cccCCHHHHHHHHHHHHhcC---CCeEEEeCCHHHHHHHHHHHHHHHhhc-cCC--
Confidence            79999999999999998876543 34678888999999999885   579999999999999999999976322 221  


Q ss_pred             cccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           82 DFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        82 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                        .+         .+||.          +..+|||.+.++++..+
T Consensus       123 --~~---------~~vi~----------~~~~yhg~~~~~~~~~~  146 (395)
T 3nx3_A          123 --KG---------GQFIA----------FKHSFHGRTLGALSLTA  146 (395)
T ss_dssp             --TT---------CEEEE----------ETTCCCCSSHHHHTTCC
T ss_pred             --CC---------CEEEE----------EcCCcCCCCHHHHhhcC
Confidence              12         27999          99999999988766554

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.25  E-value=1.1e-11  Score=105.16  Aligned_cols=100  Identities=13%  Similarity=-0.006  Sum_probs=77.3

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCccc
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLV   81 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~   81 (158)
                      +||+||+|++|+.+|+++.....+..+.++...+++++|++..|.+ .++|+|++||+||+++|+|+++.++ ..+|+  
T Consensus        64 lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~ggsea~~~al~~~~~~~-~~~g~--  139 (449)
T 3a8u_X           64 AGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGN-LNHVFFTDSGSECALTAVKMVRAYW-RLKGQ--  139 (449)
T ss_dssp             TCBSCHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTT-EEEEEEESSHHHHHHHHHHHHHHHH-HHTTC--
T ss_pred             CCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCC-CCEEEEcCcHHHHHHHHHHHHHHHH-HhcCC--
Confidence            7999999999999999876411111566788899999999998755 7899999999999999999999754 22332  


Q ss_pred             cccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCC
Q 031493           82 DFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNH  125 (158)
Q Consensus        82 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~  125 (158)
                      + .+         .+||.          +..+|||.+.+.++..
T Consensus       140 ~-~~---------~~vi~----------~~~~yhg~~~~~~~~~  163 (449)
T 3a8u_X          140 A-TK---------TKMIG----------RARGYHGVNIAGTSLG  163 (449)
T ss_dssp             T-TC---------CEEEE----------ETTCCCCSSHHHHHHC
T ss_pred             C-CC---------CEEEE----------ECCCcCCCChhhhhcc
Confidence            1 11         26898          9999999998655443

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.23  E-value=2.2e-11  Score=103.21  Aligned_cols=98  Identities=20%  Similarity=0.168  Sum_probs=76.8

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCccc
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLV   81 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~   81 (158)
                      +||+||+|++|+.+|+++..+.+ ..+.++...+|+++|++..+   .++++|++||+||+++|+|+++.+.. .+|.  
T Consensus        71 lG~~~p~v~~ai~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~g---~~~v~~~~ggteA~~~al~~~~~~~~-~~~~--  143 (420)
T 2pb2_A           71 LGHCHPALVEALKSQGETLWHTS-NVFTNEPALRLGRKLIDATF---AERVLFMNSGTEANETAFKLARHYAC-VRHS--  143 (420)
T ss_dssp             TCBTCHHHHHHHHHHHTTCCCCC-TTSCCHHHHHHHHHHHHHSS---CSEEEEESSHHHHHHHHHHHHHHHHH-HHTC--
T ss_pred             cCCCCHHHHHHHHHHHHhccccc-CccCCHHHHHHHHHHHhhCC---CCeEEEeCCHHHHHHHHHHHHHHHhh-hccC--
Confidence            69999999999999998876543 24667889999999999875   57999999999999999999987532 1221  


Q ss_pred             cccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           82 DFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        82 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                      + .+         .+||.          +..+|||.+.+.++..+
T Consensus       144 ~-g~---------~~vi~----------~~~~yh~~~~~~~~~~g  168 (420)
T 2pb2_A          144 P-FK---------TKIIA----------FHNAFHGRSLFTVSVGG  168 (420)
T ss_dssp             T-TC---------CEEEE----------ETTCCCCSSHHHHHHSS
T ss_pred             C-CC---------CEEEE----------EeCCcCCcCHHHHHhcC
Confidence            0 11         26888          99999999987655433

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.22  E-value=3.6e-11  Score=102.30  Aligned_cols=89  Identities=11%  Similarity=0.023  Sum_probs=64.3

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCccc
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLV   81 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~   81 (158)
                      +||+||+|++|+.+|+++..+   .++.++...++++.|.+..| + .++|+|++||+||+++|+|+||.+.    ++  
T Consensus        71 lg~~~~~v~~a~~~~~~~~~~---~~~~~~~~~~la~~l~~~~~-~-~~~v~~~~gg~eA~~~al~~ar~~~----~~--  139 (453)
T 2cy8_A           71 LGHGHPRVNAAIAEALSHGVQ---YAASHPLEVRWAERIVAAFP-S-IRKLRFTGSGTETTLLALRVARAFT----GR--  139 (453)
T ss_dssp             TCBTCHHHHHHHHHHHTTTCS---SCSSCHHHHHHHHHHHHHCT-T-CSEEEEESCHHHHHHHHHHHHHHHH----CC--
T ss_pred             cCCCCHHHHHHHHHHHHhCCC---CCCCCHHHHHHHHHHHhhCC-C-CCEEEEeCCHHHHHHHHHHHHHHhh----CC--
Confidence            799999999999999977432   24678888999999999887 5 7899999999999999999999753    22  


Q ss_pred             cccCCCcccccccceeEecccccccccCCCCCcCCcCcccccC
Q 031493           82 DFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSN  124 (158)
Q Consensus        82 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~  124 (158)
                                   -+||.          +.++|||.+.+.++.
T Consensus       140 -------------~~vi~----------~~~~yhg~~~~~~~~  159 (453)
T 2cy8_A          140 -------------RMILR----------FEGHYHGWHDFSASG  159 (453)
T ss_dssp             -------------CEEEE----------ECC------------
T ss_pred             -------------CEEEE----------EcCCcCCCchhhHhh
Confidence                         15888          899999999876553

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.18  E-value=7.5e-11  Score=99.35  Aligned_cols=99  Identities=24%  Similarity=0.298  Sum_probs=76.4

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCccc
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLV   81 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~   81 (158)
                      +||.||+|++|+.+|+++..+.....+.++...+++++|++..+.+ .++++|++||+||++.|+|+++.++. .+|.  
T Consensus        57 lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~ggtea~~~ai~~~~~~~~-~~g~--  132 (429)
T 1s0a_A           57 HGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQP-LECVFLADSGSVAVEVAMKMALQYWQ-AKGE--  132 (429)
T ss_dssp             TCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTT-CCEEEEESSHHHHHHHHHHHHHHHHH-HHTC--
T ss_pred             CCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCC-CCEEEEeCCHHHHHHHHHHHHHHHhc-ccCC--
Confidence            6899999999999999876543222456777899999999998755 68999999999999999999986531 1121  


Q ss_pred             cccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCC
Q 031493           82 DFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNH  125 (158)
Q Consensus        82 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~  125 (158)
                        .+         .+||.          +..+|||.+.+.++..
T Consensus       133 --~~---------~~vi~----------~~~~yh~~~~~~~~~~  155 (429)
T 1s0a_A          133 --AR---------QRFLT----------FRNGYHGDTFGAMSVC  155 (429)
T ss_dssp             --CC---------CEEEE----------ETTCCCCSSHHHHTTS
T ss_pred             --CC---------CeEEE----------ECCCCCCCchhhhhhc
Confidence              01         26898          9999999987655543

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.15  E-value=7.6e-11  Score=97.67  Aligned_cols=99  Identities=15%  Similarity=-0.011  Sum_probs=76.5

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCccc
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLV   81 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~   81 (158)
                      +||+||+|.+|+.+++++..+... .+..+...+++++|++..+   .+.++|++||+||++.|+++++......+|.  
T Consensus        50 lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~la~~~g---~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~--  123 (392)
T 3ruy_A           50 QGHRHPKIINALIDQANRVTLTSR-AFHSDQLGPWYEKVAKLTN---KEMVLPMNTGAEAVETAIKTARRWAYDVKKV--  123 (392)
T ss_dssp             TCBTCHHHHHHHHHHHTTCSCCCT-TSEETTHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHHHHHHHTSCC--
T ss_pred             cCCCCHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHHHHhcC---CCEEEEeCcHHHHHHHHHHHHHHhhhhccCC--
Confidence            799999999999999988765432 3556778899999999885   5799999999999999999998652222232  


Q ss_pred             cccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCC
Q 031493           82 DFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNH  125 (158)
Q Consensus        82 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~  125 (158)
                      + .++        .+||.          ...+|||.+.+.++..
T Consensus       124 ~-~~~--------~~vi~----------~~~~~~~~~~~~~~~~  148 (392)
T 3ruy_A          124 E-ANR--------AEIIV----------CEDNFHGRTMGAVSMS  148 (392)
T ss_dssp             C-TTC--------CEEEE----------ETTCCCCSSHHHHHTC
T ss_pred             C-CCC--------cEEEE----------EcCCcCCCCHhhhhcc
Confidence            1 111        27898          9999999998865543

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.11  E-value=2.1e-10  Score=96.82  Aligned_cols=94  Identities=20%  Similarity=0.196  Sum_probs=74.4

Q ss_pred             CCCC-cHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            2 FRWF-QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         2 ~Gh~-hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      +||+ ||+|++|+.+|+++..+.....+.++...+++++|++..+.+..++|+|++||+||++.|+|+++.+.    |. 
T Consensus        56 lG~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~----~~-  130 (419)
T 2eo5_A           56 LGWPSHPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTG----RK-  130 (419)
T ss_dssp             TCBSCCHHHHHHHHHHHTTSCCCSCSCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTS----CC-
T ss_pred             cCCCCCHHHHHHHHHHHhhCccccccccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhh----CC-
Confidence            7899 99999999999987654322346778889999999998864302489999999999999999998642    21 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNH  125 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~  125 (158)
                                     +||.          +..+|||.+.+.++..
T Consensus       131 ---------------~vi~----------~~p~yh~~~~~~~~~~  150 (419)
T 2eo5_A          131 ---------------YIIA----------FLGGFHGRTFGSISLT  150 (419)
T ss_dssp             ---------------EEEE----------ETTCCCCSSHHHHHHC
T ss_pred             ---------------cEEE----------ECCCcCCCCHhhHhhc
Confidence                           6888          9999999998766543

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=98.95  E-value=2.2e-09  Score=88.89  Aligned_cols=98  Identities=26%  Similarity=0.219  Sum_probs=75.6

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCccc
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLV   81 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~   81 (158)
                      +||+||+|.+|+.++++++.+.. ..+..+...+++++|++..+   .+.++|++||+||++.|+++++.++.. +|.  
T Consensus        53 lg~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~~---~~~v~~~~gg~~a~~~al~~~~~~~~~-~~~--  125 (406)
T 4adb_A           53 LGHAHPELREALNEQASKFWHTG-NGYTNEPVLRLAKKLIDATF---ADRVFFCNSGAEANEAALKLARKFAHD-RYG--  125 (406)
T ss_dssp             TCBTCHHHHHHHHHHHTTCSCCC-TTSCCHHHHHHHHHHHHHSS---CSEEEEESSHHHHHHHHHHHHHHHHHH-HTC--
T ss_pred             cCCCCHHHHHHHHHHHHhccccc-CCcCCHHHHHHHHHHHhhCC---CCeEEEeCcHHHHHHHHHHHHHHHHHh-cCC--
Confidence            79999999999999998865543 35677888999999999885   569999999999999999999864221 121  


Q ss_pred             cccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCC
Q 031493           82 DFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHG  126 (158)
Q Consensus        82 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~  126 (158)
                      + .+ +        +||.          ...+|||.+....+..+
T Consensus       126 ~-g~-~--------~vi~----------~~~~y~~~~~~~~~~~~  150 (406)
T 4adb_A          126 S-HK-S--------GIVA----------FKNAFHGRTLFTVSAGG  150 (406)
T ss_dssp             T-TC-C--------EEEE----------ETTCCCCSSHHHHHHSS
T ss_pred             C-CC-c--------EEEE----------ECCCcCCCcHHHhhccC
Confidence            0 11 2        6888          89999999876554433

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=98.81  E-value=6.8e-09  Score=86.58  Aligned_cols=91  Identities=21%  Similarity=0.216  Sum_probs=71.0

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCC-CcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWA-SRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l-~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      +||.+|+|++|+.+++++..+.....+..+...+|.++|++..+++ . +.++|+++|+||+++|+++||.+.    +. 
T Consensus        55 lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~~v~~~~g~~~a~~~~~~~a~~~~----~~-  128 (426)
T 1sff_A           55 TGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGD-FAKKTLLVTTGSEAVENAVKIARAAT----KR-  128 (426)
T ss_dssp             TCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCS-SCEEEEEESSHHHHHHHHHHHHHHHH----TC-
T ss_pred             cCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCcc-cccEEEEeCchHHHHHHHHHHHHHhh----CC-
Confidence            6999999999999998775443222345677889999999998543 4 789999999999999999998652    11 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccc
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFC  122 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~  122 (158)
                          +          +||.          ...+|||.+...+
T Consensus       129 ----~----------~vi~----------~~p~y~~~~~~~~  146 (426)
T 1sff_A          129 ----S----------GTIA----------FSGAYHGRTHYTL  146 (426)
T ss_dssp             ----C----------EEEE----------ETTCCCCSSHHHH
T ss_pred             ----C----------eEEE----------ECCCcCCCchHhh
Confidence                1          5788          8999999986543

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=98.65  E-value=1e-07  Score=78.97  Aligned_cols=93  Identities=22%  Similarity=0.166  Sum_probs=70.3

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCccc
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLV   81 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~   81 (158)
                      +||.+|+|.+|+.+++++..+.. ..+..+...+++++|++..+   .+.++|++||+||+++|++.++.+...  +.  
T Consensus        54 lg~~~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~g---~~~v~~~~gg~~a~~~al~~~~~~~~~--~~--  125 (397)
T 2ord_A           54 LGHSHPRLVEAIKDQAEKLIHCS-NLFWNRPQMELAELLSKNTF---GGKVFFANTGTEANEAAIKIARKYGKK--KS--  125 (397)
T ss_dssp             TCBTCHHHHHHHHHHHHHCSCCC-TTSEEHHHHHHHHHHHHTTT---SCEEEEESSHHHHHHHHHHHHHHHHHH--HC--
T ss_pred             cCCCCHHHHHHHHHHHHhcccCc-cccCCHHHHHHHHHHHHhcC---CCeEEEeCCHHHHHHHHHHHHHHHhhc--CC--
Confidence            68999999999999998865432 23456778899999999874   579999999999999999998754210  10  


Q ss_pred             cccCCCcccccccceeEecccccccccCCCCCcCCcCcccc
Q 031493           82 DFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFC  122 (158)
Q Consensus        82 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~  122 (158)
                       +.+         .+||.          ...+|||.+...+
T Consensus       126 -~~~---------~~vi~----------~~~~yh~~~~~~~  146 (397)
T 2ord_A          126 -EKK---------YRILS----------AHNSFHGRTLGSL  146 (397)
T ss_dssp             -TTC---------CEEEE----------EBTCCCCSSHHHH
T ss_pred             -CCC---------ceEEE----------EcCCcCCCchhhh
Confidence             011         15888          8899999987543

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=98.60  E-value=1.7e-07  Score=77.54  Aligned_cols=91  Identities=18%  Similarity=0.003  Sum_probs=70.5

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCccc
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLV   81 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~   81 (158)
                      |||.+|+|.+|+.+++++..+.. ..+..+...++.++|++..+.+ .+.+++++||+||+++|++.++.+.   .|   
T Consensus        59 ~g~~~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~gg~~a~~~al~~~~~~~---~~---  130 (395)
T 1vef_A           59 LGHGNPEVVEAVKRQAETLMAMP-QTLPTPMRGEFYRTLTAILPPE-LNRVFPVNSGTEANEAALKFARAHT---GR---  130 (395)
T ss_dssp             TCBTCHHHHHHHHHHHHHCCCCC-TTSCCHHHHHHHHHHHHTSCTT-EEEEEEESSHHHHHHHHHHHHHHHH---SC---
T ss_pred             CCCCCHHHHHHHHHHHHhCCCCc-cccCCHHHHHHHHHHHHhcCCC-cCEEEEcCcHHHHHHHHHHHHHHHh---CC---
Confidence            68999999999999998765432 2356777889999999988544 5789999999999999999887431   11   


Q ss_pred             cccCCCcccccccceeEecccccccccCCCCCcCCcCccccc
Q 031493           82 DFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCS  123 (158)
Q Consensus        82 ~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s  123 (158)
                         .          +||.          ...+|||.+...+.
T Consensus       131 ---~----------~vi~----------~~~~y~~~~~~~~~  149 (395)
T 1vef_A          131 ---K----------KFVA----------AMRGFSGRTMGSLS  149 (395)
T ss_dssp             ---C----------EEEE----------ETTCCCCSSHHHHH
T ss_pred             ---C----------eEEE----------EcCCcCCCchhhhh
Confidence               1          5777          78899998865433

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=98.42  E-value=1.3e-06  Score=71.43  Aligned_cols=93  Identities=17%  Similarity=0.168  Sum_probs=69.1

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCC-CcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWA-SRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l-~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      |||.+|++.+++.+++++..+.. ..++.+...++.++|++..+   . +.+++++||+||+++|++++|.+..  ++. 
T Consensus        42 ~g~~~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~l~~~la~~~g---~~~~v~~~~g~t~a~~~~~~~~~~~~~--~~~-  114 (375)
T 2eh6_A           42 LGHAYPKLTEALKEQVEKLLHVS-NLYENPWQEELAHKLVKHFW---TEGKVFFANSGTESVEAAIKLARKYWR--DKG-  114 (375)
T ss_dssp             TCBSCHHHHHHHHHHHHHCSCCC-TTBCCHHHHHHHHHHHHTSS---SCEEEEEESSHHHHHHHHHHHHHHHHH--HTT-
T ss_pred             cCCCCHHHHHHHHHHHHhccccC-cccCCHHHHHHHHHHHhhcC---CCCeEEEeCchHHHHHHHHHHHHHHhc--cCC-
Confidence            68899999999999998754332 24556677889999999874   4 7899999999999999998765420  011 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccc
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFC  122 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~  122 (158)
                       + .+ +        +||.          ...+|||......
T Consensus       115 -~-g~-~--------~vl~----------~~~~y~~~~~~~~  135 (375)
T 2eh6_A          115 -K-NK-W--------KFIS----------FENSFHGRTYGSL  135 (375)
T ss_dssp             -C-CC-C--------EEEE----------EBTCCCCSSHHHH
T ss_pred             -C-CC-C--------EEEE----------ECCCcCCCchhhh
Confidence             0 11 1        6888          8999999876543

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=98.07  E-value=8.9e-06  Score=68.13  Aligned_cols=85  Identities=11%  Similarity=-0.133  Sum_probs=61.1

Q ss_pred             CCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcC--CCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            3 RWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG--KGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         3 Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P--~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+.+|+|++|+.+|+++..+. +.....+...++++.|.+..+  -. .+.++|+++|+||+++|+|.+..     .|  
T Consensus        73 ~~~~~~v~~a~~~~~~~~~~~-y~~~~~~l~~~l~~~l~~~~g~~~~-~~~v~~~~g~~ea~~~a~~~~~~-----~g--  143 (421)
T 3l8a_A           73 FLPVPEIKEAIINYGREHIFG-YNYFNDDLYQAVIDWERKEHDYAVV-KEDILFIDGVVPAISIALQAFSE-----KG--  143 (421)
T ss_dssp             SCCCHHHHHHHHHHHHHCCSS-CBCCCHHHHHHHHHHHHHHHCCCCC-GGGEEEESCHHHHHHHHHHHHSC-----TE--
T ss_pred             CCCCHHHHHHHHHHHhcCCcC-CCCCCHHHHHHHHHHHHHHhCCCCC-HHHEEEcCCHHHHHHHHHHHhcC-----CC--
Confidence            357999999999999874332 122334556678888877654  23 56899999999999999998742     12  


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcc
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQG  120 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g  120 (158)
                                    -+||.          ...+|||.+..
T Consensus       144 --------------d~Vi~----------~~~~y~~~~~~  159 (421)
T 3l8a_A          144 --------------DAVLI----------NSPVYYPFART  159 (421)
T ss_dssp             --------------EEEEE----------EESCCHHHHHH
T ss_pred             --------------CEEEE----------CCCCcHHHHHH
Confidence                          15888          88899986644

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=97.79  E-value=7.2e-05  Score=59.98  Aligned_cols=65  Identities=12%  Similarity=0.036  Sum_probs=50.8

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .|+.+|+|.+|+.++++.  +.. .....+...+++++|.+..+.+ .+.++|+++|+||++.+++.++
T Consensus        23 ~~~~~~~v~~a~~~~~~~--~~~-~~g~~~~~~~~~~~l~~~~g~~-~~~v~~~~g~t~a~~~~~~~~~   87 (359)
T 1svv_A           23 SVGMHPKILDLMARDNMT--QHA-GYGQDSHCAKAARLIGELLERP-DADVHFISGGTQTNLIACSLAL   87 (359)
T ss_dssp             SSCCCHHHHHHHHHHTTC--CCC-STTCSHHHHHHHHHHHHHHTCT-TSEEEEESCHHHHHHHHHHHHC
T ss_pred             cCCCCHHHHHHHHHHHhh--ccc-cccccHHHHHHHHHHHHHhCCC-CccEEEeCCchHHHHHHHHHHh
Confidence            367899999999998753  221 2234667788999998887644 5689999999999999999885

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=97.53  E-value=0.00033  Score=57.02  Aligned_cols=65  Identities=6%  Similarity=-0.114  Sum_probs=48.0

Q ss_pred             CCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcC--CCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            4 WFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG--KGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         4 h~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P--~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      ..+|+|.+|+.+++++..+. ......+...++++.|.+..+  -. .+.++++++|+||++.+++...
T Consensus        45 ~~~~~v~~a~~~~~~~~~~~-y~~~~~~~~~~l~~~l~~~~g~~~~-~~~v~~~~g~~~a~~~~~~~~~  111 (391)
T 4dq6_A           45 KAAPCIIDSLKNRLEQEIYG-YTTRPDSYNESIVNWLYRRHNWKIK-SEWLIYSPGVIPAISLLINELT  111 (391)
T ss_dssp             CCCHHHHHHHHHHHTTCCCC-CBCCCHHHHHHHHHHHHHHHCCCCC-GGGEEEESCHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHhCCCCC-CCCCCHHHHHHHHHHHHHHhCCCCc-HHHeEEcCChHHHHHHHHHHhC
Confidence            45799999999998763322 112334556778888888654  23 5689999999999999999764

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=97.47  E-value=0.00051  Score=55.89  Aligned_cols=68  Identities=6%  Similarity=-0.179  Sum_probs=50.3

Q ss_pred             CCCcHHHHHHHHHHHHhcCcc-CCCCC-----CChHHHHHHHHHHhhcCC-CCCCcEEEeCChHHHHHHHHHHHHh
Q 031493            3 RWFQIELARDMGYTAARFGHV-MFPEN-----VYEPALECAELLLQGVGK-GWASRAYFSDNGSTAIEIALKMAFR   71 (158)
Q Consensus         3 Gh~hP~Iv~Av~eQl~~l~~~-~~~~~-----~~~~~~~LAe~L~~~~P~-~~l~~v~f~~SGSEA~E~AlKlAR~   71 (158)
                      |+.+|+|.+|+.+++++.... +....     ..+...++.++|++..+. + .+.++|+++|+||++++++..++
T Consensus        33 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~v~~~~g~t~a~~~~~~~~~~  107 (406)
T 1kmj_A           33 AQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARS-AEELVFVRGTTEGINLVANSWGN  107 (406)
T ss_dssp             CCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSC-GGGEEEESSHHHHHHHHHHHTHH
T ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCC-CCeEEEeCChhHHHHHHHHHhhh
Confidence            567899999999999875311 10011     234467788999998864 3 46899999999999999998864

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=97.45  E-value=9.6e-05  Score=60.07  Aligned_cols=68  Identities=10%  Similarity=-0.084  Sum_probs=50.3

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCC---CCCC--hHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFP---ENVY--EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~---~~~~--~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      +|+.+|+|.+|+.++++...+.+..   .+..  +...++.++|++..+.+ .+.++++++|+||++++++..+
T Consensus        25 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~~~~~~~~~   97 (390)
T 1elu_A           25 QGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVD-PNTITITDNVTTGCDIVLWGLD   97 (390)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSC-GGGEEEESSHHHHHHHHHHHSC
T ss_pred             cCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCC-HHHEEEeCChHHHHHHHHhCCC
Confidence            4778899999999998775321110   1222  45678889999987643 4589999999999999998775

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=97.41  E-value=0.00022  Score=58.44  Aligned_cols=65  Identities=17%  Similarity=0.034  Sum_probs=45.3

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      +++++|.+.+++.+++.+...... ....+...++.++|++..+   .+.+++++||++|++.|++.++
T Consensus         7 ~~~~~~~~~~~v~~a~~~~~~~~~-~~~~~~~~~l~~~la~~~~---~~~~~~~~sGt~al~~al~~~~   71 (367)
T 3nyt_A            7 LKNQQARIKDKIDAGIQRVLRHGQ-YILGPEVTELEDRLADFVG---AKYCISCANGTDALQIVQMALG   71 (367)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCC-CSSCHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHHHTT
T ss_pred             ccccccccCHHHHHHHHHHHhcCC-ccCChHHHHHHHHHHHHhC---CCcEEEeCCHHHHHHHHHHHhC
Confidence            456666666555555544322111 2245677889999999885   4589999999999999999875

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=97.31  E-value=0.00071  Score=56.27  Aligned_cols=65  Identities=8%  Similarity=-0.071  Sum_probs=41.9

Q ss_pred             CcHHHHHHHHHHHHhcCc--cCCCCC--CChHHHHHHHHHHhhcC--CCCCC-cEEEeCChHHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGH--VMFPEN--VYEPALECAELLLQGVG--KGWAS-RAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~--~~~~~~--~~~~~~~LAe~L~~~~P--~~~l~-~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .+|+|.+|+.+++++...  ..+...  ..+...++++.+.+..+  .+ .+ .++++++|+||++++++...
T Consensus        51 ~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~-~~~~v~~~~g~~~a~~~~~~~~~  122 (429)
T 1yiz_A           51 APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTIN-PMTEVLVTVGAYEALYATIQGHV  122 (429)
T ss_dssp             CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCC-TTTSEEEESHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCC-CcCCEEEecChHHHHHHHHHHhc
Confidence            479999999999876211  111111  12334455655544333  23 46 89999999999999999863

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=97.22  E-value=0.0012  Score=55.33  Aligned_cols=65  Identities=15%  Similarity=0.114  Sum_probs=49.6

Q ss_pred             CC-CCcHHHHHHHHHHHHhcCccCC-C--CC-CChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            2 FR-WFQIELARDMGYTAARFGHVMF-P--EN-VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         2 ~G-h~hP~Iv~Av~eQl~~l~~~~~-~--~~-~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      +| +.||+|.+|+.+++++...... .  .. ..+...+|.++|++..+   .+.+++.+||++||+.|++..
T Consensus        75 lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g---~~~~i~~~sGs~a~~~al~~l  144 (427)
T 2w8t_A           75 MGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYG---TTGAIVFSTGYMANLGIISTL  144 (427)
T ss_dssp             TCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhC---CCceEEecCcHHHHHHHHHHh
Confidence            47 6899999999999987442110 0  11 35667889999999884   568888999999999999874

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=97.22  E-value=0.00061  Score=55.44  Aligned_cols=59  Identities=8%  Similarity=-0.053  Sum_probs=44.3

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      .+|++.+|+.++++++.     .+..+...++.++|++..+-+ .+.++++++|+||++.+++..
T Consensus        38 ~~~~v~~a~~~~~~~~~-----~y~~~~~~~l~~~la~~~~~~-~~~v~~~~g~~~al~~~~~~~   96 (364)
T 1lc5_A           38 MPVSVKRALIDNLDCIE-----RYPDADYFHLHQALARHHQVP-ASWILAGNGETESIFTVASGL   96 (364)
T ss_dssp             CCHHHHHHHHHTGGGGG-----SCCCTTCHHHHHHHHHHHTSC-GGGEEEESSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHCcC-HHHEEECCCHHHHHHHHHHHc
Confidence            57999999999886532     222333456777787776533 468999999999999999977

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=97.22  E-value=0.00053  Score=56.41  Aligned_cols=68  Identities=10%  Similarity=-0.005  Sum_probs=43.9

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccC-CCC--CCChHHHHHHHHHHhhcC--CCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            2 FRWFQIELARDMGYTAARFGHVM-FPE--NVYEPALECAELLLQGVG--KGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~-~~~--~~~~~~~~LAe~L~~~~P--~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .||.+|+|.+|+.+++++..... +..  ...+...++|+.+.+..+  .. .+.++++++|+||++++++...
T Consensus        47 ~~~~~~~v~~a~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~-~~~v~~t~g~t~a~~~~~~~~~  119 (407)
T 2zc0_A           47 ELIPRAVLGEIAKEVLEKEPKSVMYTPANGIPELREELAAFLKKYDHLEVS-PENIVITIGGTGALDLLGRVLI  119 (407)
T ss_dssp             TTSCHHHHHHHHHHHHHHCGGGGSCCCTTCCHHHHHHHHHHHHHHSCCCCC-GGGEEEESHHHHHHHHHHHHHC
T ss_pred             hhCCHHHHHHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhcCCCCC-cceEEEecCHHHHHHHHHHHhc
Confidence            36788999999999998642111 111  112333445555544223  22 4689999999999999999874

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=97.19  E-value=0.00051  Score=56.06  Aligned_cols=65  Identities=11%  Similarity=0.043  Sum_probs=44.8

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      +|+++|.+.+.+.+++.+...... ....+...++.++|++..+   .+.++|++||++|++.|++..+
T Consensus         8 l~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~la~~~~---~~~~i~~~sgt~al~~~l~~l~   72 (373)
T 3frk_A            8 FKPMHDEIEYEIKFKFEEIYKRNW-FILGDEDKKFEQEFADYCN---VNYCIGCGNGLDALHLILKGYD   72 (373)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTC-CSSSHHHHHHHHHHHHHHT---SSEEEEESCHHHHHHHHHHHTT
T ss_pred             CCcccCCCCHHHHHHHHHHHHCCC-ccCCchHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHcC
Confidence            466666666555555544221111 2345677889999999875   4689999999999999998763

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=97.19  E-value=0.0014  Score=53.32  Aligned_cols=65  Identities=11%  Similarity=-0.070  Sum_probs=46.1

Q ss_pred             CCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcC--CCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            4 WFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG--KGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         4 h~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P--~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      ..+|+|.+|+.+++++..+. +.....+...++++.|.+..+  -. .+.++++++|+||++++++...
T Consensus        40 ~~~~~v~~a~~~~~~~~~~~-y~~~~~~l~~~la~~l~~~~g~~~~-~~~i~~~~g~~~a~~~~~~~l~  106 (391)
T 3dzz_A           40 KIAPEIMASMEEKLKVAAFG-YESVPAEYYKAVADWEEIEHRARPK-EDWCVFASGVVPAISAMVRQFT  106 (391)
T ss_dssp             CCCHHHHHHHHHHHTTCCCC-CBCCCHHHHHHHHHHHHHHHSCCCC-GGGEEEESCHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHhcCcCC-CCCCCHHHHHHHHHHHHHHhCCCCC-HHHEEECCCHHHHHHHHHHHhC
Confidence            46899999999998764321 112233445667777777543  23 4689999999999999999763

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=97.18  E-value=0.00085  Score=54.47  Aligned_cols=65  Identities=0%  Similarity=-0.203  Sum_probs=44.0

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCC--CCCCcEEEeCChHHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGK--GWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~--~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .+|+|++|+.+++..+..+.......+...++++.+.+..+.  + .+.++++++|+||++.+++...
T Consensus        37 ~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~-~~~i~~t~g~~~al~~~~~~~~  103 (376)
T 3ezs_A           37 TPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELK-ENELISTLGSREVLFNFPSFVL  103 (376)
T ss_dssp             CCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCC-GGGEEEESSSHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCC-HHHEEECcCcHHHHHHHHHHHc
Confidence            479999999988754433221111234455677776654442  3 4789999999999999999775

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=97.15  E-value=0.00096  Score=54.44  Aligned_cols=64  Identities=13%  Similarity=0.047  Sum_probs=42.1

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhh------cCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG------VGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~------~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .+|++.+++.+++++..... ..+..+...++.+.|++.      .+-. .+.++++++|+||++++++...
T Consensus        44 ~~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~l~~~la~~l~~~~g~~~~-~~~v~~~~G~~~al~~~~~~l~  113 (369)
T 3cq5_A           44 PSEALVADLVATVDKIATEL-NRYPERDAVELRDELAAYITKQTGVAVT-RDNLWAANGSNEILQQLLQAFG  113 (369)
T ss_dssp             CCHHHHHHHHHHHHHHGGGT-TSCCCTTCHHHHHHHHHHHHHHHCCCCC-GGGEEEESHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHhccccc-ccCCCccHHHHHHHHHHhhhhcccCCCC-hHhEEECCChHHHHHHHHHHhc
Confidence            57999999999997642111 123222223555555554      3323 4689999999999999998763

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=97.13  E-value=0.00094  Score=54.53  Aligned_cols=60  Identities=10%  Similarity=-0.007  Sum_probs=44.3

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCCh-HHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVYE-PALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~~-~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .+|.+.+++.+++++..     .+... ...+|.+.|++..+.+ .+.++++++|+||++.+++...
T Consensus        39 ~~~~v~~a~~~~~~~~~-----~y~~~~~~~~l~~~la~~~~~~-~~~v~~~~g~~~a~~~~~~~~~   99 (381)
T 1v2d_A           39 PPPFLLEAVRRALGRQD-----QYAPPAGLPALREALAEEFAVE-PESVVVTSGATEALYVLLQSLV   99 (381)
T ss_dssp             CCHHHHHHHHHHTTTSC-----SCCCTTCCHHHHHHHHHHHTSC-GGGEEEESSHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHhc-----CCCCCCCCHHHHHHHHHhcCCC-hhhEEEcCChHHHHHHHHHHhC
Confidence            47899999999986521     22222 3456777888877544 4689999999999999999773

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=97.10  E-value=0.0024  Score=51.91  Aligned_cols=67  Identities=10%  Similarity=-0.031  Sum_probs=42.4

Q ss_pred             CCCCcHHHHHHHHHHHHhcCc-cCCCCCCChHHHHHHHHHHhhcC--CCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            2 FRWFQIELARDMGYTAARFGH-VMFPENVYEPALECAELLLQGVG--KGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~-~~~~~~~~~~~~~LAe~L~~~~P--~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      +|+ +|++.+++.+++++... +.......+...++|+.+.+..+  -+ .+.++++++|+||++.+++...
T Consensus        41 ~~~-~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~-~~~v~~~~g~~~a~~~~~~~~~  110 (370)
T 2z61_A           41 FNT-PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADII-PDNIIITGGSSLGLFFALSSII  110 (370)
T ss_dssp             SCC-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCC-GGGEEEESSHHHHHHHHHHHHC
T ss_pred             CCC-CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCC-hhhEEECCChHHHHHHHHHHhc
Confidence            355 78999999999875321 11001122334455665554221  12 4689999999999999999763

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=97.09  E-value=0.00096  Score=54.17  Aligned_cols=63  Identities=8%  Similarity=-0.013  Sum_probs=44.2

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      .+|+|.+|+.+++++..... ..++.+...+|.++|++..+-. .+.++++++|+||++.+++..
T Consensus        40 ~~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~lr~~la~~~g~~-~~~i~~t~g~~~al~~~~~~l  102 (360)
T 3hdo_A           40 PSPEVVKAILEELGPDGAAL-RIYPSASSQKLREVAGELYGFD-PSWIIMANGSDEVLNNLIRAF  102 (360)
T ss_dssp             CCHHHHHHHHHHHTTTCGGG-GSCCCSSCHHHHHHHHHHHTCC-GGGEEEESSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcccchh-hcCCCCchHHHHHHHHHHhCcC-cceEEEcCCHHHHHHHHHHHH
Confidence            47999999999987631101 1233333356777777776533 568999999999999999865

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=97.09  E-value=0.00071  Score=54.63  Aligned_cols=66  Identities=9%  Similarity=-0.173  Sum_probs=47.5

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCC--ChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhc
Q 031493            5 FQIELARDMGYTAARFGHVMFPENV--YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRK   72 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~--~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~   72 (158)
                      -+|++.+++.+++++..... ..++  .+...++.+.|.+..+.+ .+.++++++|+||++.|++.++..
T Consensus        42 ~~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~~~l~~~la~~~~~~-~~~i~~~~ggt~a~~~~~~~~~~~  109 (397)
T 3f9t_A           42 VLPITRKIVDIFLETNLGDP-GLFKGTKLLEEKAVALLGSLLNNK-DAYGHIVSGGTEANLMALRCIKNI  109 (397)
T ss_dssp             CCTHHHHHHHHHTTCCTTSG-GGBHHHHHHHHHHHHHHHHHTTCT-TCEEEEESCHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHhhcCCCc-ccChhHHHHHHHHHHHHHHHhCCC-CCCEEEecCcHHHHHHHHHHHHHH
Confidence            37899999999876532111 1111  233456888888887654 568899999999999999999864

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=97.08  E-value=0.0012  Score=53.98  Aligned_cols=67  Identities=4%  Similarity=-0.127  Sum_probs=48.9

Q ss_pred             CCCcHHHHHHHHHHHHhcCcc-C--CCCCC---ChHHHHHHHHHHhhcCC-CCCCcEEEeCChHHHHHHHHHHHH
Q 031493            3 RWFQIELARDMGYTAARFGHV-M--FPENV---YEPALECAELLLQGVGK-GWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         3 Gh~hP~Iv~Av~eQl~~l~~~-~--~~~~~---~~~~~~LAe~L~~~~P~-~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      ++.+|+|.+|+.+++++.... +  ...+.   .+...++.++|++..+. + .+.++++++|+||++++++..+
T Consensus        38 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~-~~~v~~~~g~t~a~~~~~~~~~  111 (420)
T 1t3i_A           38 SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARS-PREIVYTRNATEAINLVAYSWG  111 (420)
T ss_dssp             CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSC-GGGEEEESSHHHHHHHHHHHTH
T ss_pred             CCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCC-CCeEEEcCChHHHHHHHHHHhh
Confidence            466899999999999874311 1  01121   23456788899988764 3 4789999999999999999885

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=97.06  E-value=0.0026  Score=52.07  Aligned_cols=64  Identities=8%  Similarity=-0.142  Sum_probs=41.3

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcC--CCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG--KGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P--~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .+|+|.+++.++++..... +.....+...++++.+.+..+  -+ .+.++++++|+||++++++...
T Consensus        45 ~~~~v~~a~~~~~~~~~~~-y~~~~~~l~~~la~~l~~~~g~~~~-~~~v~~t~g~~~a~~~~~~~l~  110 (399)
T 1c7n_A           45 NPPELIEGLKKYLDETVLG-YTGPTEEYKKTVKKWMKDRHQWDIQ-TDWIINTAGVVPAVFNAVREFT  110 (399)
T ss_dssp             CCHHHHHHHHHHHHHCCCS-SBCCCHHHHHHHHHHHHHHHCCCCC-GGGEEEESSHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHhcCCCC-CCCCcHHHHHHHHHHHHHHhCCCCC-hhhEEEcCCHHHHHHHHHHHhc
Confidence            4789999999998753211 111122334445555544333  23 4689999999999999998653

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=97.05  E-value=0.00048  Score=56.74  Aligned_cols=66  Identities=12%  Similarity=0.085  Sum_probs=44.7

Q ss_pred             CCCcHHHHHHHHHHHHhcCccCCCCCCC-hHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            3 RWFQIELARDMGYTAARFGHVMFPENVY-EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         3 Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~-~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      ||.+|++.+++.+++++..... ..+.. ....+|.+.|++..+-+ .+.++++++|+||++.+++...
T Consensus        46 ~~~~~~v~~a~~~~~~~~~~~~-~~y~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~~~al~~~~~~~~  112 (397)
T 2zyj_A           46 LFPKEEAAEAAARILREKGEVA-LQYSPTEGYAPLRAFVAEWIGVR-PEEVLITTGSQQALDLVGKVFL  112 (397)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHHH-TSCCCTTCCHHHHHHHHHHHTSC-GGGEEEESHHHHHHHHHHHHHC
T ss_pred             hCCHHHHHHHHHHHHHhcchhh-hCCCCCCCCHHHHHHHHHHhCCC-hhhEEEeccHHHHHHHHHHHhC
Confidence            5778999999999987632111 12222 12345666666665322 4689999999999999998763

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=97.04  E-value=0.0023  Score=51.56  Aligned_cols=67  Identities=12%  Similarity=0.020  Sum_probs=48.2

Q ss_pred             CCCcHHHHHHHHHHHHhcCccCCCC-C-----CChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHh
Q 031493            3 RWFQIELARDMGYTAARFGHVMFPE-N-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR   71 (158)
Q Consensus         3 Gh~hP~Iv~Av~eQl~~l~~~~~~~-~-----~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~   71 (158)
                      |+.+|+|.+|+.+++++. +..... .     ..+...++.+.|++..+-+ .+.++++++|+||++.+++..+.
T Consensus        11 ~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~~~~~~~~~~   83 (384)
T 1eg5_A           11 TRVDDRVLEEMIVFYREK-YGNPNSAHGMGIEANLHMEKAREKVAKVLGVS-PSEIFFTSCATESINWILKTVAE   83 (384)
T ss_dssp             CCCCHHHHHHHHHHHHTC-CCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSC-GGGEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHHHHHHHHcCCC-CCeEEEECCHHHHHHHHHHhhhh
Confidence            577999999999998753 111000 0     1233467888888887533 45899999999999999998874

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=97.04  E-value=0.0008  Score=53.88  Aligned_cols=62  Identities=11%  Similarity=0.078  Sum_probs=47.2

Q ss_pred             CCCcHHHHHHHHHHHHhcCccCCCCC-CChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            3 RWFQIELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         3 Gh~hP~Iv~Av~eQl~~l~~~~~~~~-~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      ++.+|+|++|+.+++.  .+.  ..+ ..+...++.+.|.+..+ . -..++|++||+||++.|++.++
T Consensus        18 ~~~~~~v~~a~~~~~~--~~~--~~~~~~~~~~~l~~~la~~~g-~-~~~v~~~~~gt~a~~~al~~~~   80 (356)
T 1v72_A           18 AGASPEVAQALVKHSS--GQA--GPYGTDELTAQVKRKFCEIFE-R-DVEVFLVPTGTAANALCLSAMT   80 (356)
T ss_dssp             CCCCHHHHHHHHHTTS--SCC--CSTTCSHHHHHHHHHHHHHHT-S-CCEEEEESCHHHHHHHHHHTSC
T ss_pred             cCCCHHHHHHHHhhcc--Ccc--cccccchHHHHHHHHHHHHhC-C-CCcEEEeCCccHHHHHHHHHhc
Confidence            6789999999998853  222  233 34566789999999886 3 3458999999999999999765

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=97.02  E-value=0.002  Score=52.71  Aligned_cols=63  Identities=2%  Similarity=-0.165  Sum_probs=42.0

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCCh-HHHHHHHHHHhhcC--CCCCCcEEEeCChHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVYE-PALECAELLLQGVG--KGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~~-~~~~LAe~L~~~~P--~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      .+|+|.+|+.++++..... +.....+ ...++|+.+.+..+  .+ .+.++++++|+||++++++..
T Consensus        42 ~~~~v~~a~~~~~~~~~~~-y~~~~~~~lr~~la~~l~~~~g~~~~-~~~v~~t~g~~~al~~~~~~l  107 (390)
T 1d2f_A           42 TAPCIIEALNQRLMHGVFG-YSRWKNDEFLAAIAHWFSTQHYTAID-SQTVVYGPSVIYMVSELIRQW  107 (390)
T ss_dssp             CCHHHHHHHHHHHTTCCCC-CCCSCCHHHHHHHHHHHHHHSCCCCC-GGGEEEESCHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHhCCCCC-CCCCChHHHHHHHHHHHHHhcCCCCC-HHHEEEcCCHHHHHHHHHHHh
Confidence            5799999999998652111 1111334 45566666655332  22 468999999999999999865

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=97.01  E-value=0.00019  Score=59.33  Aligned_cols=69  Identities=13%  Similarity=-0.021  Sum_probs=47.9

Q ss_pred             CCCcHHHHHHHHHHHH--hcCccCCC-CC-----CChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhc
Q 031493            3 RWFQIELARDMGYTAA--RFGHVMFP-EN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRK   72 (158)
Q Consensus         3 Gh~hP~Iv~Av~eQl~--~l~~~~~~-~~-----~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~   72 (158)
                      |+.+|+|++|+.++++  +....... .+     ..+...++.+.|++..+.+ .+.++|+++|+||+++|++....+
T Consensus        32 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~ggt~a~~~a~~~l~~~  108 (423)
T 3lvm_A           32 TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGAD-PREIVFTSGATESDNLAIKGAANF  108 (423)
T ss_dssp             CCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESSHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCC-CCeEEEeCChHHHHHHHHHHHHHh
Confidence            5678999999999876  32111000 00     1233467888888887644 568999999999999999977654

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=97.00  E-value=0.0012  Score=53.60  Aligned_cols=61  Identities=7%  Similarity=0.012  Sum_probs=45.8

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCC-CCCCcEEEeCChHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGK-GWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~-~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      .+|+|.+|+.+++++...   ..+..+...+|.++|++..+- . .+.++++++|+||++.+++..
T Consensus        44 ~~~~v~~a~~~~~~~~~~---~~y~~~~~~~l~~~la~~~g~~~-~~~i~~~~g~t~a~~~~~~~~  105 (367)
T 3euc_A           44 LPPALRSELAARLGEVAL---NRYPVPSSEALRAKLKEVMQVPA-GMEVLLGNGSDEIISMLALAA  105 (367)
T ss_dssp             CCHHHHHHHHHHHHHHHT---TCSCCCCHHHHHHHHHHHHTCCT-TCEEEEEEHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHhhhhhh---hcCCCCcHHHHHHHHHHHhCCCC-cceEEEcCCHHHHHHHHHHHH
Confidence            579999999999875321   133444456788888887753 3 478999999999999999865

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=96.99  E-value=0.00053  Score=56.32  Aligned_cols=62  Identities=16%  Similarity=0.005  Sum_probs=43.7

Q ss_pred             CCCCcH----HHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            2 FRWFQI----ELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         2 ~Gh~hP----~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      +++++|    ++.+++.++++...+    ....+...+|.++|++..+   .+.+++++||++|++.|++.++
T Consensus        27 l~~~~p~~~~~~~~a~~~~~~~~~~----~~~~~~~~~l~~~la~~~~---~~~~i~~~~gt~al~~~l~~~~   92 (391)
T 3dr4_A           27 ISVAAPRLDGNERDYVLECMDTTWI----SSVGRFIVEFEKAFADYCG---VKHAIACNNGTTALHLALVAMG   92 (391)
T ss_dssp             -CCCCCCCCSSHHHHHHHHHHHTCC----SSCSHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHT
T ss_pred             eccCCCCCCHHHHHHHHHHHHcCCc----cCCChHHHHHHHHHHHHhC---CCcEEEeCCHHHHHHHHHHHcC
Confidence            455554    456666665544211    1245677889999999885   4588999999999999999874

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=96.94  E-value=0.002  Score=53.50  Aligned_cols=66  Identities=9%  Similarity=0.044  Sum_probs=46.5

Q ss_pred             CCcHHHHHHHHHHHHhcCccCCCCCC-----ChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            4 WFQIELARDMGYTAARFGHVMFPENV-----YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         4 h~hP~Iv~Av~eQl~~l~~~~~~~~~-----~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      +.+|+|++|+.++++.........+.     .+...++.++|++..+-+ .+.++|+++|+||++.+++...
T Consensus        29 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~~~~~~~~~   99 (432)
T 3a9z_A           29 PLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGK-PQDIIFTSGGTESNNLVIHSTV   99 (432)
T ss_dssp             CCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCC-cCeEEEeCChHHHHHHHHHHHH
Confidence            56899999999998763211111121     122357788888877533 4689999999999999999885

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=96.94  E-value=0.00046  Score=56.05  Aligned_cols=64  Identities=11%  Similarity=-0.021  Sum_probs=42.2

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      ||+++|.+.+ +.+++.+...... ....+...++.++|++..+   .+.+++++||++|++.+++..+
T Consensus        11 l~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~l~~~la~~~~---~~~~~~~~~gt~a~~~~~~~~~   74 (374)
T 3uwc_A           11 LERQFADIEP-YLNDLREFIKTAD-FTLGAELEKFEKRFAALHN---APHAIGVGTGTDALAMSFKMLN   74 (374)
T ss_dssp             HHHHTSSCHH-HHHHHHHHHHHTC-CSSCHHHHHHHHHHHHHTT---CSEEEEESCHHHHHHHHHHHTT
T ss_pred             cccCCCCchH-HHHHHHHHHHcCC-cccChhHHHHHHHHHHHhC---CCcEEEeCCHHHHHHHHHHHcC
Confidence            3455555444 4444433221111 2346677889999999885   4588999999999999998764

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=96.89  E-value=0.0034  Score=51.89  Aligned_cols=65  Identities=9%  Similarity=-0.118  Sum_probs=41.4

Q ss_pred             CcHHHHHHHHHHHHhc-CccCCCCCCChHHHHHHHHHHhhcC--CCCCC-cEEEeCChHHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVG--KGWAS-RAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l-~~~~~~~~~~~~~~~LAe~L~~~~P--~~~l~-~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .+|++.+|+.+++++. ..+.......+...++++.+.+..+  -. .+ .++++++|+||++.+++...
T Consensus        39 ~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~-~~~~v~~t~g~~~al~~~~~~~~  107 (411)
T 2o0r_A           39 GPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYD-PETEVLVTVGATEAIAAAVLGLV  107 (411)
T ss_dssp             CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCC-TTTSEEEEEHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCC-CCceEEEeCCHHHHHHHHHHHhc
Confidence            4789999999998762 1111000112334455555554333  12 45 89999999999999998763

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=96.86  E-value=0.0033  Score=50.71  Aligned_cols=59  Identities=12%  Similarity=-0.016  Sum_probs=46.5

Q ss_pred             CCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            4 WFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         4 h~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .-+|++.+|+.++++...     ..+.+...++.++|++..+   .+.+++++||+||++.+++..+
T Consensus        10 ~~~~~v~~a~~~~~~~~~-----~~~~~~~~~l~~~la~~~~---~~~v~~~~ggt~al~~~~~~~~   68 (375)
T 2fnu_A           10 CLDKEDKKAVLEVLNSKQ-----LTQGKRSLLFEEALCEFLG---VKHALVFNSATSALLTLYRNFS   68 (375)
T ss_dssp             CCCHHHHHHHHHHHTSSC-----CSSSHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHHHSS
T ss_pred             CCCHHHHHHHHHHHHcCc-----ccCChHHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHhc
Confidence            357999999999986521     1235567788899999875   4589999999999999999775

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=96.83  E-value=0.0045  Score=50.74  Aligned_cols=66  Identities=14%  Similarity=0.088  Sum_probs=49.7

Q ss_pred             CCC-CcHHHHHHHHHHHHhcCccCC----CCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            2 FRW-FQIELARDMGYTAARFGHVMF----PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         2 ~Gh-~hP~Iv~Av~eQl~~l~~~~~----~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      +|+ .+|++.+++.+++++......    ..-..+...++++.|.+..+   .+.++++++|+||++.+++...
T Consensus        54 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g---~~~v~~~~ggt~a~~~~~~~~~  124 (398)
T 3a2b_A           54 LGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVG---KEAAILFSTGFQSNLGPLSCLM  124 (398)
T ss_dssp             TCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHSS
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhC---CCcEEEECCHHHHHHHHHHHHh
Confidence            367 789999999999977542110    01134667889999998875   4689999999999999998763

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=96.83  E-value=0.0048  Score=49.88  Aligned_cols=64  Identities=9%  Similarity=-0.042  Sum_probs=44.0

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcC--CCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG--KGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P--~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .+|+|.+|+.+++++..+.. .....+...++++.+.+..+  -+ .+.++++++|+||++.+++...
T Consensus        37 ~~~~v~~a~~~~~~~~~~~y-~~~~~~lr~~la~~~~~~~~~~~~-~~~i~~t~g~~~a~~~~~~~~~  102 (377)
T 3fdb_A           37 TCPAVLQAITDAVQREAFGY-QPDGSLLSQATAEFYADRYGYQAR-PEWIFPIPDVVRGLYIAIDHFT  102 (377)
T ss_dssp             CCHHHHHHHHHHHHTTCCSS-CCSSCCHHHHHHHHHHHHHCCCCC-GGGEEEESCHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHcCCCCC-CCCCHHHHHHHHHHHHHHhCCCCC-HHHEEEeCChHHHHHHHHHHhc
Confidence            68999999999997632211 11224455666766665422  12 4689999999999999998763

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=96.82  E-value=0.0021  Score=51.62  Aligned_cols=60  Identities=10%  Similarity=-0.002  Sum_probs=47.3

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .+|+|.+|+.++++..     ..++.+...+|.++|++..+-+ .+.++++++|+||++.+++...
T Consensus        30 ~~~~v~~a~~~~~~~~-----~~y~~~~~~~l~~~la~~~~~~-~~~i~~~~g~~~a~~~~~~~l~   89 (354)
T 3ly1_A           30 MSPKAQAAARDAVVKA-----NRYAKNEILMLGNKLAAHHQVE-APSILLTAGSSEGIRAAIEAYA   89 (354)
T ss_dssp             CCHHHHHHHHHTGGGT-----TSCCHHHHHHHHHHHHHHTTSC-GGGEEEESHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHhhC-----cCCCCCchHHHHHHHHHHhCCC-hHHEEEeCChHHHHHHHHHHHh
Confidence            5799999999987642     2445556678889999887643 5689999999999999998763

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=96.82  E-value=0.0066  Score=49.50  Aligned_cols=64  Identities=13%  Similarity=-0.047  Sum_probs=41.0

Q ss_pred             CcHHHHHHHHHHHHhc-CccCCCCCCChHHHHHHHHHHhhcC--CCCCC-cEEEeCChHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARF-GHVMFPENVYEPALECAELLLQGVG--KGWAS-RAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l-~~~~~~~~~~~~~~~LAe~L~~~~P--~~~l~-~v~f~~SGSEA~E~AlKlA   69 (158)
                      .+|++.+++.+++++. ..+.......+...++++.+.+..+  -+ .+ .++++++|+||++.+++..
T Consensus        44 ~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~-~~~~v~~~~g~~~a~~~~~~~~  111 (386)
T 1u08_A           44 GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPD-ADSDITVTAGATEALYAAITAL  111 (386)
T ss_dssp             CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCC-TTTTEEEESSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCC-CCCCEEEcCChHHHHHHHHHHh
Confidence            4789999999998752 1111000112334455555544332  22 46 8999999999999999876

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=96.80  E-value=0.0039  Score=50.68  Aligned_cols=65  Identities=9%  Similarity=-0.045  Sum_probs=48.4

Q ss_pred             CC-CCcHHHHHHHHHHHHhcCccCC-CCC---CChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            2 FR-WFQIELARDMGYTAARFGHVMF-PEN---VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         2 ~G-h~hP~Iv~Av~eQl~~l~~~~~-~~~---~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      +| |.+|++.+++.+++++..+... ..+   ..+...++.++|++..+   .+..++.+||++|++.+++..
T Consensus        54 ~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~---~~~~i~~~sGt~a~~~~l~~~  123 (399)
T 3tqx_A           54 LGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLG---TDDTILYSSCFDANGGLFETL  123 (399)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHTTHHHH
T ss_pred             ccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHC---CCcEEEECchHHHHHHHHHHh
Confidence            47 7899999999999988553211 111   34557788899999875   456777789999999999765

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=96.75  E-value=0.002  Score=53.30  Aligned_cols=63  Identities=11%  Similarity=-0.034  Sum_probs=44.9

Q ss_pred             CcHHHHHHHHHHHHhcCccCC---C-CCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMF---P-ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~---~-~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .||+|++|+.+++++......   . .-..+...+++++|++..+   .+.+++.+||+||++.|++...
T Consensus        74 ~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g---~~~~i~~~sGt~a~~~~l~~~~  140 (409)
T 3kki_A           74 NHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTG---FDECLLSQSGWNANVGLLQTIC  140 (409)
T ss_dssp             TCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHT---CSEEEEESCHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhC---CCeEEEecchHHHHHHHHHHhc
Confidence            589999999999987432110   0 0123445678888888875   4567888999999999998653

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=96.73  E-value=0.0067  Score=49.35  Aligned_cols=65  Identities=18%  Similarity=0.071  Sum_probs=49.0

Q ss_pred             CC-CCcHHHHHHHHHHHHhcCccC-CCC---CCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            2 FR-WFQIELARDMGYTAARFGHVM-FPE---NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         2 ~G-h~hP~Iv~Av~eQl~~l~~~~-~~~---~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      +| +.+|++.+++.+++++..... ...   ...+...++.++|++..+   .+.+++.+||+||++.+++..
T Consensus        50 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g---~~~~i~~~sGt~a~~~~~~~~  119 (384)
T 1bs0_A           50 LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLG---YSRALLFISGFAANQAVIAAM  119 (384)
T ss_dssp             TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhC---CCcEEEeCCcHHHHHHHHHHh
Confidence            46 589999999999998743211 011   134677889999999884   457888999999999999865

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=96.73  E-value=0.0052  Score=49.53  Aligned_cols=68  Identities=13%  Similarity=-0.019  Sum_probs=47.9

Q ss_pred             CCCcHHHHHHHHHHHHhcCccCCCCCC-----ChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHh
Q 031493            3 RWFQIELARDMGYTAARFGHVMFPENV-----YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR   71 (158)
Q Consensus         3 Gh~hP~Iv~Av~eQl~~l~~~~~~~~~-----~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~   71 (158)
                      |..+|+|.+|+.+++++........+.     .+...++.+.|++..+.+ .+.++++++|++|++++++....
T Consensus        10 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~a~~~~~~~l~~   82 (382)
T 4eb5_A           10 KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGG-GGTVVFTSGATEANNLAIIGYAM   82 (382)
T ss_dssp             CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCT-TEEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEcCchHHHHHHHHHHHHh
Confidence            567899999999998763211100121     134566778888877533 35899999999999999998873

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=96.73  E-value=0.0027  Score=52.00  Aligned_cols=65  Identities=12%  Similarity=-0.032  Sum_probs=48.3

Q ss_pred             CCC-CcHHHHHHHHHHHHhcCccCC-CCC---CChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            2 FRW-FQIELARDMGYTAARFGHVMF-PEN---VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         2 ~Gh-~hP~Iv~Av~eQl~~l~~~~~-~~~---~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      +|+ .+|++.+|+.+++++...... ..+   ..+...+|.++|++..+   .+..++.+|||+|++.|++..
T Consensus        56 ~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g---~~~~i~~~sGs~a~~~~~~~~  125 (401)
T 1fc4_A           56 LGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLG---MEDAILYSSCFDANGGLFETL  125 (401)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHTTHHHH
T ss_pred             ccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhC---CCcEEEeCChHHHHHHHHHHH
Confidence            576 899999999999987543210 011   14567789999999884   446778899999999998875

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=96.71  E-value=0.00051  Score=56.13  Aligned_cols=63  Identities=16%  Similarity=0.080  Sum_probs=44.6

Q ss_pred             CCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCC-cEEEeCChHHHHHHHHHHHH
Q 031493            3 RWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS-RAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         3 Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~-~v~f~~SGSEA~E~AlKlAR   70 (158)
                      ++.+|+|.+|+.+++..  +..  ....+...++++.|.+..+.+ .+ .++++++|+||++.+++.+.
T Consensus        43 ~~~~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~g~~-~~~~v~~t~g~t~al~~~~~~~~  106 (393)
T 1vjo_A           43 SNAHPSVLQAMNVSPVG--HLD--PAFLALMDEIQSLLRYVWQTE-NPLTIAVSGTGTAAMEATIANAV  106 (393)
T ss_dssp             CCCCHHHHHHHSSCCCC--TTS--HHHHHHHHHHHHHHHHHHTCC-CSCEEEESSCHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHhccccc--ccC--HHHHHHHHHHHHHHHHHhCCC-CCcEEEEeCchHHHHHHHHHhcc
Confidence            35678999988876532  111  112245567888888877644 45 89999999999999999874

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=96.69  E-value=0.004  Score=50.81  Aligned_cols=66  Identities=9%  Similarity=0.027  Sum_probs=45.0

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcC---CCCCC-cEEEeCChHHHHHHHHHHHHh
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG---KGWAS-RAYFSDNGSTAIEIALKMAFR   71 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P---~~~l~-~v~f~~SGSEA~E~AlKlAR~   71 (158)
                      .+|+|.+|+.++++.+..+.......+...++++.|.+..+   -. .+ .++++++|+||++.+++....
T Consensus        44 ~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~-~~~~i~~t~g~~~al~~~~~~~~~  113 (396)
T 3jtx_A           44 TPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVD-ADNEILPVLGSREALFSFVQTVLN  113 (396)
T ss_dssp             CCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCC-TTTSEEEESSHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCC-CCCeEEEcCCcHHHHHHHHHHHhC
Confidence            47999999999886543332111123445667777765432   12 45 899999999999999998753

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=96.67  E-value=0.0051  Score=50.51  Aligned_cols=69  Identities=12%  Similarity=-0.055  Sum_probs=49.6

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCC-C----CChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHh
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPE-N----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR   71 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~-~----~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~   71 (158)
                      .|+.+|+|.+|+.+++++........ +    ..+...++.++|++..+.+ .+.++|+++|++|+++|++.++.
T Consensus        37 ~~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~al~~al~~~~~  110 (416)
T 1qz9_A           37 LGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGAR-DGEVVVTDTTSINLFKVLSAALR  110 (416)
T ss_dssp             SCCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCC-TTSEEECSCHHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCC-cccEEEeCChhHHHHHHHHhhcc
Confidence            36789999999999987531110000 0    1245577889999887644 46899999999999999998763

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=96.67  E-value=0.0043  Score=50.13  Aligned_cols=59  Identities=12%  Similarity=0.022  Sum_probs=43.2

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      .+|+|++|+.++++...     .++.+...+|.++|++..+-+ .+.++++++|+||++.+++..
T Consensus        44 ~~~~v~~a~~~~~~~~~-----~y~~~~~~~lr~~la~~~~~~-~~~v~~~~g~~~a~~~~~~~l  102 (365)
T 3get_A           44 TPPKAIECLRQNANKAH-----LYPDDSMIELKSTLAQKYKVQ-NENIIIGAGSDQVIEFAIHSK  102 (365)
T ss_dssp             SCHHHHHHHHHHGGGTT-----SCCCTTCHHHHHHHHHHHTCC-GGGEEEESSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhc-----cCCCCChHHHHHHHHHHhCCC-cceEEECCCHHHHHHHHHHHH
Confidence            47999999999887432     222222246777777776533 568999999999999999875

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=96.64  E-value=0.0053  Score=50.03  Aligned_cols=63  Identities=13%  Similarity=-0.010  Sum_probs=40.9

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCC--CChHHHHHHHHHHhhcC--CCCCCc-EEEeCChHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPEN--VYEPALECAELLLQGVG--KGWASR-AYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~--~~~~~~~LAe~L~~~~P--~~~l~~-v~f~~SGSEA~E~AlKlA   69 (158)
                      .+|++.+++.+++++... .+...  ..+...++++.+.+..+  -. .+. ++++++|+||++.+++..
T Consensus        40 ~~~~v~~a~~~~~~~~~~-~y~~~~g~~~l~~~la~~~~~~~g~~~~-~~~~v~~~~g~~~a~~~~~~~~  107 (389)
T 1gd9_A           40 TPQHIKEYAKEALDKGLT-HYGPNIGLLELREAIAEKLKKQNGIEAD-PKTEIMVLLGANQAFLMGLSAF  107 (389)
T ss_dssp             CCHHHHHHHHHHHHTTCC-SCCCTTCCHHHHHHHHHHHHHHHCCCCC-TTTSEEEESSTTHHHHHHHTTT
T ss_pred             CCHHHHHHHHHHHhCCCC-CCCCCCCcHHHHHHHHHHHHHHhCCCCC-CCCeEEEcCChHHHHHHHHHHh
Confidence            478999999999876321 11111  22334456666654333  12 467 999999999999998764

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=96.63  E-value=0.0028  Score=51.08  Aligned_cols=65  Identities=11%  Similarity=-0.020  Sum_probs=42.8

Q ss_pred             CCCcHHHHHHHHHHHHhcC---c---cCCCCCCChHHHHHHHH-HHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            3 RWFQIELARDMGYTAARFG---H---VMFPENVYEPALECAEL-LLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         3 Gh~hP~Iv~Av~eQl~~l~---~---~~~~~~~~~~~~~LAe~-L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      ++.+|++.+|+.++++...   +   ........+...++.+. |++..+   .+.++|+++|+||++.+++...
T Consensus        19 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~---~~~v~~~~g~t~a~~~~~~~~~   90 (371)
T 2e7j_A           19 GKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLG---CDVARVTNGAREAKFAVMHSLA   90 (371)
T ss_dssp             CCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTT---SSEEEEESSHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcC---CCEEEEeCChHHHHHHHHHHHh
Confidence            5668999999999887642   1   01112234556788888 888875   3489999999999999999873

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=96.62  E-value=0.0038  Score=52.02  Aligned_cols=66  Identities=15%  Similarity=0.027  Sum_probs=43.1

Q ss_pred             CCCcHHHHHHHHHHHHhcC----ccCCCCCCChHHHHHHHHHHhhcC---CCCCCcEEEeCChHHHHHHHHHHH
Q 031493            3 RWFQIELARDMGYTAARFG----HVMFPENVYEPALECAELLLQGVG---KGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         3 Gh~hP~Iv~Av~eQl~~l~----~~~~~~~~~~~~~~LAe~L~~~~P---~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      |+.+|+|.+|+.+++++..    .+.......+...++|+.+.+..+   -+ .+.++++++|+||++++++..
T Consensus        57 ~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~-~~~v~~t~G~~~al~~~~~~l  129 (425)
T 1vp4_A           57 TFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLD-EDNLIFTVGSQQALDLIGKLF  129 (425)
T ss_dssp             GSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCC-GGGEEEEEHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCC-cccEEEeccHHHHHHHHHHHh
Confidence            6778999999999987631    111001122334556666644323   23 468999999999999999865

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=96.61  E-value=0.0065  Score=49.66  Aligned_cols=65  Identities=12%  Similarity=0.117  Sum_probs=43.1

Q ss_pred             CcHHHHHHHHHHHHhcC-----ccCCCCCCChHHHHHHHHHHhhcC--CCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFG-----HVMFPENVYEPALECAELLLQGVG--KGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~-----~~~~~~~~~~~~~~LAe~L~~~~P--~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .+|+|.+|+.+++++..     .+....-..+...++++.+.+..+  -+ .+.++++++|+||++.+++...
T Consensus        49 ~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~-~~~i~~~~g~~~al~~~~~~l~  120 (398)
T 3ele_A           49 APQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFN-ADNLYMTMGAAASLSICFRALT  120 (398)
T ss_dssp             CCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCC-GGGEEEESSHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCC-hHHEEEccCHHHHHHHHHHHHc
Confidence            57999999999987732     111101112334556666655433  12 4689999999999999998774

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=96.58  E-value=0.0014  Score=53.06  Aligned_cols=59  Identities=8%  Similarity=-0.094  Sum_probs=41.9

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      .+|+|.+|+.++++.+.     .++.+...++.++|++..+-+ .+.++++++|+||++.+++..
T Consensus        46 ~~~~v~~a~~~~~~~~~-----~y~~~~~~~lr~~la~~~~~~-~~~v~~~~g~t~a~~~~~~~~  104 (363)
T 3ffh_A           46 TSKKVAAIQANSSVETE-----IYPDGWASSLRKEVADFYQLE-EEELIFTAGVDELIELLTRVL  104 (363)
T ss_dssp             CCHHHHHHHHTCBSCCC-----BC----CHHHHHHHHHHHTCC-GGGEEEESSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhh-----cCCCcchHHHHHHHHHHhCCC-hhhEEEeCCHHHHHHHHHHHH
Confidence            47899999988764322     333444467778888876533 568999999999999999875

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=96.56  E-value=0.0026  Score=51.15  Aligned_cols=59  Identities=7%  Similarity=0.014  Sum_probs=44.6

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      -+|+|.+|+.++++....     ++.+...++.++|++..+-+ .+.++++++|+||++++++..
T Consensus        40 ~~~~v~~a~~~~~~~~~~-----y~~~~~~~l~~~la~~~~~~-~~~i~~~~g~t~al~~~~~~~   98 (361)
T 3ftb_A           40 IPKSFLNNIDEGIKNLGV-----YPDVNYRRLNKSIENYLKLK-DIGIVLGNGASEIIELSISLF   98 (361)
T ss_dssp             SCHHHHTTHHHHHHGGGS-----CCCTTCHHHHHHHHHHHTCC-SCEEEEESSHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHhcC-----CCCccHHHHHHHHHHHhCCC-cceEEEcCCHHHHHHHHHHHc
Confidence            379999999999887432     23334466777787777544 578999999999999999754

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=96.55  E-value=0.00093  Score=56.17  Aligned_cols=59  Identities=15%  Similarity=0.054  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHhcCccCCCCC-CChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhc
Q 031493            7 IELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRK   72 (158)
Q Consensus         7 P~Iv~Av~eQl~~l~~~~~~~~-~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~   72 (158)
                      |+|++|+.++++...    ..+ ..+...+|.++|++..+   .+.++|++||+||+++|+++++..
T Consensus        53 ~~v~~a~~~~l~~~~----~~y~~~~~~~~l~~~la~~~~---~~~v~~t~~gt~A~~~al~~~~~~  112 (467)
T 2oqx_A           53 GAVTQSMQAAMMRGD----EAYSGSRSYYALAESVKNIFG---YQYTIPTHQGRGAEQIYIPVLIKK  112 (467)
T ss_dssp             SCCCHHHHHHTTSCC----CCSSSCHHHHHHHHHHHHHHC---CSEEEEEC--CCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCc----ceeccCchhHHHHHHHHHHhC---cCcEEEcCCcHHHHHHHHHHHhcc
Confidence            678888887764321    123 24556789999999885   579999999999999999999854

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=96.55  E-value=0.0072  Score=49.10  Aligned_cols=63  Identities=10%  Similarity=-0.129  Sum_probs=41.7

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCC-hHHHHHHHHHHhhc----CCC-CCC-cEEEeCChHHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVY-EPALECAELLLQGV----GKG-WAS-RAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~-~~~~~LAe~L~~~~----P~~-~l~-~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .+|+|.+|+.+++++.. .  ..+.. ....++.+.|++..    +.+ ..+ .++++++|+||++.+++...
T Consensus        39 ~~~~v~~a~~~~~~~~~-~--~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~  108 (376)
T 2dou_A           39 PPEAPLKALAEALNDPT-T--YGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALT  108 (376)
T ss_dssp             CCHHHHHHHHHHTTCGG-G--SSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHhCCC-c--CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhc
Confidence            37999999999885421 1  23444 23455666666544    322 023 89999999999999998753

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=96.54  E-value=0.0064  Score=49.56  Aligned_cols=66  Identities=12%  Similarity=0.031  Sum_probs=41.7

Q ss_pred             CCcHHHHHHHHHHHHhcCccCCCCC-CChHHHHHHHHHHhhcCC-C----CCCcEEE--eCChHHHHHHHHHHHHhc
Q 031493            4 WFQIELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVGK-G----WASRAYF--SDNGSTAIEIALKMAFRK   72 (158)
Q Consensus         4 h~hP~Iv~Av~eQl~~l~~~~~~~~-~~~~~~~LAe~L~~~~P~-~----~l~~v~f--~~SGSEA~E~AlKlAR~~   72 (158)
                      +.+|+|.+|+.+++++.. .  ..+ ......+|.+.|++.... +    ..+.+++  +++|+||+++++++.+.+
T Consensus        44 ~~~~~v~~a~~~~~~~~~-~--~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~  117 (396)
T 2q7w_A           44 PVLTSVKKAEQYLLENET-T--KNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKN  117 (396)
T ss_dssp             CCCHHHHHHHHHHHHHCC-C--CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHhhcCccc-c--cCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHh
Confidence            346999999999886531 1  122 222234455555554311 0    0357887  999999999999988753

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=96.53  E-value=0.0099  Score=48.72  Aligned_cols=57  Identities=14%  Similarity=0.044  Sum_probs=45.8

Q ss_pred             cHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      +|++.+|+.+++++..+     ...+...++.++|++..+   .+.++|++||++|++.|++.++
T Consensus        14 ~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~la~~~~---~~~~i~~~sGt~a~~~al~~~~   70 (390)
T 3b8x_A           14 DDLEYKAIQSVLDSKMF-----TMGEYVKQYETQFAKTFG---SKYAVMVSSGSTANLLMIAALF   70 (390)
T ss_dssp             CHHHHHHHHHHHHHTCC-----SSCHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHcCCC-----CCChHHHHHHHHHHHHHC---CCcEEEECCHHHHHHHHHHHHH
Confidence            68999999999876322     235667888899999875   4578899999999999999875

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=96.51  E-value=0.0028  Score=51.78  Aligned_cols=64  Identities=9%  Similarity=-0.168  Sum_probs=45.0

Q ss_pred             CcHHHHHHHHHHHHhcCc--cCCCCCCChHHHHHHHHHHhhcCCCCC---CcEEEeCChHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGH--VMFPENVYEPALECAELLLQGVGKGWA---SRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~--~~~~~~~~~~~~~LAe~L~~~~P~~~l---~~v~f~~SGSEA~E~AlKlA   69 (158)
                      .+|+|.+|+.+++++...  +.......+...++++.|.+..+.+ .   +.++++++|+||++.+++..
T Consensus        54 ~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~-~~~~~~i~~~~g~~~a~~~~~~~l  122 (407)
T 3nra_A           54 PTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAP-VDARDGLIITPGTQGALFLAVAAT  122 (407)
T ss_dssp             CCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSC-CCTTTSEEEESHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCC-CCCCCcEEEeCCcHHHHHHHHHHh
Confidence            579999999999875321  1111223455667888888765432 2   68999999999999999754

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=96.49  E-value=0.0098  Score=48.41  Aligned_cols=64  Identities=11%  Similarity=0.026  Sum_probs=41.3

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCC--CChHHHHHHHHHHhhcC--CCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPEN--VYEPALECAELLLQGVG--KGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~--~~~~~~~LAe~L~~~~P--~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .+|.+.+|+.+++++... .+...  ..+...++++.+.+..+  .+ .+.++++++|+||++.+++...
T Consensus        44 ~~~~v~~a~~~~~~~~~~-~y~~~~g~~~l~~~la~~~~~~~g~~~~-~~~v~~~~g~~~a~~~~~~~~~  111 (388)
T 1j32_A           44 TPKHIVEAAKAALEQGKT-RYGPAAGEPRLREAIAQKLQRDNGLCYG-ADNILVTNGGKQSIFNLMLAMI  111 (388)
T ss_dssp             CCHHHHHHHHHHHHTTCC-SCCCTTCCHHHHHHHHHHHHHHHCCCCC-GGGEEEESHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHhcCCC-CCCCCCCCHHHHHHHHHHHHHhcCCCCC-hhhEEEcCCHHHHHHHHHHHhc
Confidence            478999999999865211 11111  12334556666654322  12 4689999999999999999773

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=96.49  E-value=0.01  Score=48.52  Aligned_cols=65  Identities=8%  Similarity=0.017  Sum_probs=45.7

Q ss_pred             CCcHHHHHHHHHHHHhcCccCCCCCC-----ChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            4 WFQIELARDMGYTAARFGHVMFPENV-----YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         4 h~hP~Iv~Av~eQl~~l~~~~~~~~~-----~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      ..+|+|.+|+.+++++........+.     .+...++.+.|++..+.+ .+.++|+++|+||++++++..
T Consensus        37 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~~~g~t~al~~~~~~l  106 (406)
T 3cai_A           37 LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNAD-PGGVVLGADRAVLLSLLAEAS  106 (406)
T ss_dssp             CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCC-CCeEEEeCChHHHHHHHHHHH
Confidence            46899999999998764311111121     234567788888877533 458999999999999998853

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=96.46  E-value=0.0061  Score=51.39  Aligned_cols=66  Identities=6%  Similarity=-0.177  Sum_probs=41.6

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCC-C-CChHHHHHHHHHHhhcCCC-CCCcEEEeCChHHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPE-N-VYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~-~-~~~~~~~LAe~L~~~~P~~-~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .+|.|.+|+.+++++.....+.. . ..+...++++.+.+..+.+ ..+.++++++|+||++++++...
T Consensus        71 ~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~  139 (447)
T 3b46_A           71 PPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLL  139 (447)
T ss_dssp             CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHc
Confidence            47999999999987521111111 1 1233455666665543322 13579999999999999999763

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=96.45  E-value=0.0073  Score=50.49  Aligned_cols=63  Identities=14%  Similarity=-0.042  Sum_probs=43.3

Q ss_pred             CCcHHHHHHHHHHHHhcCccCCCCC-CChHHHHHHHHHHhhcC-----CCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            4 WFQIELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVG-----KGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         4 h~hP~Iv~Av~eQl~~l~~~~~~~~-~~~~~~~LAe~L~~~~P-----~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .-+|+|.+|+.+++++....   .| ..+...++.+.|++...     -. .+.++++++|+||++.+++...
T Consensus        71 ~~~~~v~~a~~~~~~~~~~~---~y~~~~g~~~lr~~la~~~~~~~~~~~-~~~v~~t~g~t~al~~~~~~l~  139 (427)
T 3dyd_A           71 PTDPEVTQAMKDALDSGKYN---GYAPSIGFLSSREEIASYYHCPEAPLE-AKDVILTSGCSQAIDLCLAVLA  139 (427)
T ss_dssp             CCCHHHHHHHHHHHHHCCSS---SCCCTTCCHHHHHHHHHHHCBTTBCCC-GGGEEEESSHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHhcCcCC---CCCCCCCcHHHHHHHHHHHhhcCCCCC-hHHEEEecCcHHHHHHHHHHhc
Confidence            45789999999998763221   22 22223455566665543     22 4689999999999999999875

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=96.42  E-value=0.023  Score=48.35  Aligned_cols=70  Identities=9%  Similarity=-0.058  Sum_probs=47.7

Q ss_pred             CCcHHHHHHHHHHHHhcCccCCCCCC-ChH----HHHHHHHHHhhcCCC-CCCcEEEeCChHHHHHHHHHHHHhcc
Q 031493            4 WFQIELARDMGYTAARFGHVMFPENV-YEP----ALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAFRKF   73 (158)
Q Consensus         4 h~hP~Iv~Av~eQl~~l~~~~~~~~~-~~~----~~~LAe~L~~~~P~~-~l~~v~f~~SGSEA~E~AlKlAR~~~   73 (158)
                      +.++.+.+++.+++++....+...+. .+.    ..++++.|+++.+.+ ..+.++++++|+||++.|++.+|.+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~  150 (497)
T 3mc6_A           75 HGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYA  150 (497)
T ss_dssp             CCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHH
Confidence            34589999999999875443222221 222    235667777766422 13579999999999999999998753

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=96.39  E-value=0.011  Score=50.90  Aligned_cols=69  Identities=10%  Similarity=-0.008  Sum_probs=45.2

Q ss_pred             CCcHHHHHHHHHHHHhcCccCCCCC-CChH----HHHHHHHHHhhcCCCCC--CcE--EEeCChHHHHHHHHHHHHhcc
Q 031493            4 WFQIELARDMGYTAARFGHVMFPEN-VYEP----ALECAELLLQGVGKGWA--SRA--YFSDNGSTAIEIALKMAFRKF   73 (158)
Q Consensus         4 h~hP~Iv~Av~eQl~~l~~~~~~~~-~~~~----~~~LAe~L~~~~P~~~l--~~v--~f~~SGSEA~E~AlKlAR~~~   73 (158)
                      +.++.+.+++.+++......+...+ ..+.    ..++++.|++..+.+ .  +.+  +|+++|+||++.|++.++...
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~-~~~~~v~~~~t~ggt~a~~~al~a~~~~g  184 (514)
T 3mad_A          107 HGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGD-AAGGTVCGTVTSGGTESLLLAMKTYRDWA  184 (514)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGG-GGTSCCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCC-CccCCcceEEcCcHHHHHHHHHHHHHHHh
Confidence            3568888888888765443221122 1222    234667777776422 1  466  999999999999999998753

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=96.37  E-value=0.0047  Score=50.86  Aligned_cols=63  Identities=14%  Similarity=-0.116  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHhcCccCCCCC-CChHHHHHHHHHHhhcCC------CCCCcEEE--eCChHHHHHHHHHHHHhc
Q 031493            7 IELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVGK------GWASRAYF--SDNGSTAIEIALKMAFRK   72 (158)
Q Consensus         7 P~Iv~Av~eQl~~l~~~~~~~~-~~~~~~~LAe~L~~~~P~------~~l~~v~f--~~SGSEA~E~AlKlAR~~   72 (158)
                      |.|.+|+.+++++....  ..| ......+|.+.|++..++      . .+.+++  +++|+||+++++++++.+
T Consensus        51 ~~v~~a~~~~~~~~~~~--~~y~~~~g~~~lr~~la~~~~~~~~~~~~-~~~v~~~~t~gg~~a~~~~~~~~~~~  122 (412)
T 1ajs_A           51 PVVRKVEQRIANNSSLN--HEYLPILGLAEFRTCASRLALGDDSPALQ-EKRVGGVQSLGGTGALRIGAEFLARW  122 (412)
T ss_dssp             HHHHHHHHHHHTCTTCC--CCCCCTTCCHHHHHHHHHHHHCTTCHHHH-TTCEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhChhhc--cCCCCCCCCHHHHHHHHHHHhcCCCCccC-CCcEEEEECCCcHHHHHHHHHHHHHh
Confidence            89999998887321111  122 222234555666655422      2 368999  999999999999987653

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=96.34  E-value=0.004  Score=52.26  Aligned_cols=59  Identities=5%  Similarity=-0.103  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHhcCccCCCCC-CChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhc
Q 031493            7 IELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRK   72 (158)
Q Consensus         7 P~Iv~Av~eQl~~l~~~~~~~~-~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~   72 (158)
                      |.|.+++.+++.....    .| ..+...+|.++|++..+   .+.++|++||+||+++|++.++.+
T Consensus        55 ~~v~~a~~~~~~~~~~----~y~~~~~~~~l~~~la~~~~---~~~v~~t~ggt~A~~~al~~~~~~  114 (467)
T 1ax4_A           55 NAMSDHQWAAMITGDE----AYAGSRNYYDLKDKAKELFN---YDYIIPAHQGRGAENILFPVLLKY  114 (467)
T ss_dssp             CCEEHHHHHHHHTCCC----CSSSCHHHHHHHHHHHHHHC---CCEEEEESSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccc----ccccCccHHHHHHHHHHHcC---CCcEEEcCCcHHHHHHHHHHHHHh
Confidence            5667777777653221    23 34566789999999885   579999999999999999999863

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=96.34  E-value=0.0065  Score=50.25  Aligned_cols=63  Identities=10%  Similarity=-0.070  Sum_probs=41.2

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      -.|.+.+++..+.+......+..+.++...++.++|++..+   .+.+++.+||+||++.|++...
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g---~~~~i~~~sG~~a~~~~l~~~~  100 (398)
T 2rfv_A           38 VFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLER---GEAGLATASGISAITTTLLTLC  100 (398)
T ss_dssp             CCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHC
T ss_pred             ccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhC---CCcEEEECCHHHHHHHHHHHHh
Confidence            34556666553322222222234467778899999999875   3477888899999999999763

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=96.33  E-value=0.016  Score=47.83  Aligned_cols=56  Identities=11%  Similarity=-0.077  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            7 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         7 P~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      |++.+|+.+++++..+     ...+...++.++|++..+   .+.+++++||+||++.+++..+
T Consensus        44 ~~v~~a~~~~~~~~~y-----~~~~~~~~l~~~la~~~~---~~~~v~~~~Gt~a~~~~l~~~~   99 (399)
T 2oga_A           44 AETDAAIARVLDSGRY-----LLGPELEGFEAEFAAYCE---TDHAVGVNSGMDALQLALRGLG   99 (399)
T ss_dssp             HHHHHHHHHHHHHTCC-----SSSHHHHHHHHHHHHHTT---SSEEEEESCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCCC-----CCchhHHHHHHHHHHHHC---CCeEEEecCHHHHHHHHHHHhC
Confidence            7899999999876321     124667788899999875   4578889999999999998764

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=96.32  E-value=0.0099  Score=48.48  Aligned_cols=65  Identities=11%  Similarity=-0.012  Sum_probs=41.4

Q ss_pred             CCcHHHHHHHHHHHHhcCccCCCCCC-ChHHHHHHHHHHhhc-CC--CCCCcEEE--eCChHHHHHHHHHHHHhc
Q 031493            4 WFQIELARDMGYTAARFGHVMFPENV-YEPALECAELLLQGV-GK--GWASRAYF--SDNGSTAIEIALKMAFRK   72 (158)
Q Consensus         4 h~hP~Iv~Av~eQl~~l~~~~~~~~~-~~~~~~LAe~L~~~~-P~--~~l~~v~f--~~SGSEA~E~AlKlAR~~   72 (158)
                      +.+|+|.+|+.+++++.. .  ..+. .....+|.+.|++.. ..  . .+.++|  +++|+||+++++++.+.+
T Consensus        44 ~~~~~v~~a~~~~~~~~~-~--~~y~~~~g~~~lr~~la~~~~~~~~~-~~~v~~~~~~g~~~a~~~~~~~~~~~  114 (394)
T 2ay1_A           44 PIMRAVHAAEQRMLETET-T--KTYAGLSGEPEFQKAMGELILGDGLK-SETTATLATVGGTGALRQALELARMA  114 (394)
T ss_dssp             CCCHHHHHHHHHHHHHCC-C--CCCCCSSCCHHHHHHHHHHHHGGGCC-GGGEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHhcCCcc-c--CCCCCCCCcHHHHHHHHHHHhCCCCC-cccEEEEecCCchhHHHHHHHHHHhc
Confidence            447999999999886521 1  1221 111233444444433 11  2 468999  999999999999988754

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=96.30  E-value=0.01  Score=48.92  Aligned_cols=66  Identities=8%  Similarity=-0.157  Sum_probs=42.1

Q ss_pred             CcHHHHHHHHHHHHhcC---ccCCCCCCChHHHHHHHHHHhhcCCC-CC-CcEEEeCChHHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFG---HVMFPENVYEPALECAELLLQGVGKG-WA-SRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~---~~~~~~~~~~~~~~LAe~L~~~~P~~-~l-~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .+|+|++|+.+++++..   .+.......+...++++.+.+..+.. .. +.++++++|+||++.+++...
T Consensus        42 ~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~  112 (422)
T 3fvs_A           42 PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALV  112 (422)
T ss_dssp             CCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHc
Confidence            46899999999987632   11100111234455666666543221 02 479999999999999998763

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=96.28  E-value=0.016  Score=46.28  Aligned_cols=67  Identities=13%  Similarity=-0.011  Sum_probs=46.1

Q ss_pred             CCCcHHHHHHHHHHHHhcCccCCCCCC-----ChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            3 RWFQIELARDMGYTAARFGHVMFPENV-----YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         3 Gh~hP~Iv~Av~eQl~~l~~~~~~~~~-----~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      +.-+|++.+++.+++++........+.     .+...++.+.|.+...-+ .+.++++++|+||++.+++...
T Consensus        10 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~i~~~~g~~~a~~~~~~~~~   81 (382)
T 4hvk_A           10 KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGG-GGTVVFTSGATEANNLAIIGYA   81 (382)
T ss_dssp             CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCT-TEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCC-cCeEEEECCchHHHHHHHHHhh
Confidence            345899999999998764221111111     223446778888877533 4579999999999999999765

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=96.23  E-value=0.013  Score=47.87  Aligned_cols=65  Identities=3%  Similarity=-0.155  Sum_probs=40.8

Q ss_pred             cHHHHHHHHHHHHhcCccCCCCC--CChHHHHHHHHHHhhcCCC-CC-CcEEEeCChHHHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHVMFPEN--VYEPALECAELLLQGVGKG-WA-SRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~~~--~~~~~~~LAe~L~~~~P~~-~l-~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      +|+|.+|+.+++++.....+...  ..+...++++.+.+..+.. .. +.++++++|+||++.+++...
T Consensus        38 ~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~  106 (410)
T 3e2y_A           38 PSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLV  106 (410)
T ss_dssp             CHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhc
Confidence            68899999999865321111111  1233455666665432211 02 589999999999999998763

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=96.19  E-value=0.017  Score=47.42  Aligned_cols=62  Identities=8%  Similarity=0.012  Sum_probs=39.7

Q ss_pred             cHHHHHHHHHHHHhcCccCCCCC--CChHHHHHHHHHHhhcC--CCCCCcEEEeCChHHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHVMFPEN--VYEPALECAELLLQGVG--KGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~~~--~~~~~~~LAe~L~~~~P--~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      +|.+.+++.+++++... .+...  ..+...++|+.+.+..+  -. .+.++++++|+||++.+++..
T Consensus        56 ~~~v~~a~~~~~~~~~~-~y~~~~g~~~lr~~la~~~~~~~g~~~~-~~~v~~~~g~t~al~~~~~~l  121 (389)
T 1o4s_A           56 PEPVVEEAVRFLQKGEV-KYTDPRGIYELREGIAKRIGERYKKDIS-PDQVVVTNGAKQALFNAFMAL  121 (389)
T ss_dssp             CHHHHHHHHHHHTTCCC-CCCCTTCCHHHHHHHHHHHHHHHTCCCC-GGGEEEESHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCC-CCCCCCCCHHHHHHHHHHHHHHhCCCCC-HHHEEEecCHHHHHHHHHHHh
Confidence            68999999999865321 11111  12333445555544222  12 468999999999999999876

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=95.17  E-value=0.00083  Score=55.30  Aligned_cols=64  Identities=13%  Similarity=-0.014  Sum_probs=40.4

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcC--CCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG--KGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P--~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .+|+|.+|+.+++++..+. +.....+...++++.|.+..+  .+ .+.++++++|+||++++++...
T Consensus        45 ~~~~v~~a~~~~~~~~~~~-y~~~~~~l~~~la~~l~~~~g~~~~-~~~v~~~~g~~~a~~~~~~~~~  110 (392)
T 3b1d_A           45 VMPEVKQAIHDYAEQLVYG-YTYASDELLQAVLDWEKSEHQYSFD-KEDIVFVEGVVPAISIAIQAFT  110 (392)
Confidence            3789999999998652211 111122333445555544322  22 4689999999999999998764

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=96.17  E-value=0.013  Score=48.83  Aligned_cols=62  Identities=21%  Similarity=0.101  Sum_probs=44.5

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      |++.+|+.++++.+  +...+. +....++...++.++|++..+   .+.+++++||+||++.|++..
T Consensus        30 ~~~~~~~~~~~~~~--~~~~~~-y~~~~~~~~~~l~~~la~~~g---~~~~~~~~~gt~a~~~al~~l   91 (412)
T 2cb1_A           30 YGFKTLEEGQERFA--TGEGYV-YARQKDPTAKALEERLKALEG---ALEAVVLASGQAATFAALLAL   91 (412)
T ss_dssp             CCCSSHHHHHHHHH--HCCSCS-BTTTCCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHTT
T ss_pred             eecCChHHHHHHhc--cccCcC-cCCCCChHHHHHHHHHHHHhC---CCcEEEECCHHHHHHHHHHHH
Confidence            57788877666544  222222 223456778889999999875   458999999999999999865

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=96.15  E-value=0.021  Score=46.47  Aligned_cols=59  Identities=15%  Similarity=0.012  Sum_probs=43.8

Q ss_pred             cHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .|++.+++.+++++..+   .....+...++.++|++..+   .+...+.+||+||++.|++..+
T Consensus        16 ~~~~~~a~~~~l~~~~~---~~~~~~~~~~l~~~la~~~~---~~~~i~~~sGt~al~~~l~~l~   74 (388)
T 1b9h_A           16 DDAERNGLVRALEQGQW---WRMGGDEVNSFEREFAAHHG---AAHALAVTNGTHALELALQVMG   74 (388)
T ss_dssp             CHHHHHHHHHHHHTSCC---BTTTCSHHHHHHHHHHHHTT---CSEEEEESCHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHcCCe---eecCCHHHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHcC
Confidence            48999999999876321   12335567788899999875   3456667789999999998763

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=96.13  E-value=0.0099  Score=48.55  Aligned_cols=63  Identities=11%  Similarity=0.038  Sum_probs=38.2

Q ss_pred             cHHHHHHHHHHHHhcCccCCCCC--CChHHHHHHHHHHhhcC--CCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHVMFPEN--VYEPALECAELLLQGVG--KGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~~~--~~~~~~~LAe~L~~~~P--~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      +|+|.+|+.+++++... .+...  ..+...++++.+.+..+  -+ .+.++++++|+||++.+++...
T Consensus        46 ~~~v~~a~~~~~~~~~~-~y~~~~g~~~lr~~ia~~~~~~~g~~~~-~~~v~~t~g~~~al~~~~~~l~  112 (391)
T 3h14_A           46 PRGAVEALAKSLETDAL-GYTVALGLPALRQRIARLYGEWYGVDLD-PGRVVITPGSSGGFLLAFTALF  112 (391)
T ss_dssp             CHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHHCCCCC-GGGEEEESSHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHhcCCC-CCCCCCChHHHHHHHHHHHHHHhCCCCC-HHHEEEecChHHHHHHHHHHhc
Confidence            78899999998865221 11111  12334445555544322  22 4689999999999999998764

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=96.13  E-value=0.021  Score=47.24  Aligned_cols=66  Identities=0%  Similarity=-0.152  Sum_probs=39.5

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCC--CCChHHHHHHHHHHhhcCCC-CC-CcEEEeCChHHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPE--NVYEPALECAELLLQGVGKG-WA-SRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~--~~~~~~~~LAe~L~~~~P~~-~l-~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .+|+|.+|+.+++++.....+..  ...+....+|+.+.+..+.+ .. +.++++++|+||++++++...
T Consensus        61 ~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~  130 (404)
T 2o1b_A           61 TPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVI  130 (404)
T ss_dssp             CCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhc
Confidence            47999999999875321111111  11223344555554432421 01 579999999999999998763

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=96.10  E-value=0.012  Score=48.54  Aligned_cols=65  Identities=6%  Similarity=-0.053  Sum_probs=37.1

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCC--CChHHHHHHHHHHhhcCCC-CC-CcEEEeCChHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPEN--VYEPALECAELLLQGVGKG-WA-SRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~--~~~~~~~LAe~L~~~~P~~-~l-~~v~f~~SGSEA~E~AlKlA   69 (158)
                      .+|.|.+++.+++++.....+...  ..+....+|+.+.+..+.+ .. +.++++++|+||++++++..
T Consensus        51 ~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~  119 (412)
T 2x5d_A           51 TPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLAT  119 (412)
T ss_dssp             CCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHh
Confidence            589999999998765311111001  1222334555444322311 13 58999999999999999875

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=96.07  E-value=0.0049  Score=52.17  Aligned_cols=65  Identities=14%  Similarity=0.081  Sum_probs=42.3

Q ss_pred             CCcHHHHHHHHHHHHh-cCccCC-CCC--CCh---HHHHHH-HHHHhhcCCCCCCcEEE-eCChHHHHHHHHHHHHh
Q 031493            4 WFQIELARDMGYTAAR-FGHVMF-PEN--VYE---PALECA-ELLLQGVGKGWASRAYF-SDNGSTAIEIALKMAFR   71 (158)
Q Consensus         4 h~hP~Iv~Av~eQl~~-l~~~~~-~~~--~~~---~~~~LA-e~L~~~~P~~~l~~v~f-~~SGSEA~E~AlKlAR~   71 (158)
                      +.+|+|++|+.+++.+ ...... ..+  ..+   ...+++ ++|.+..+   .+.+.+ ++||++|+++|++..++
T Consensus        56 ~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~g---~~~~~v~~~sGs~a~~~a~~~~~~  129 (447)
T 3h7f_A           56 FVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALFG---AEFANVQPHSGAQANAAVLHALMS  129 (447)
T ss_dssp             CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT---CSEEECCCSSHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHcC---CCceEEEeCCHHHHHHHHHHHhcC
Confidence            4589999999988753 211100 011  111   335577 88888875   456666 89999999999997753

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=96.04  E-value=0.022  Score=46.32  Aligned_cols=57  Identities=12%  Similarity=-0.077  Sum_probs=45.1

Q ss_pred             cHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .|++++++.+++++..+     ...+...++.++|++...   .+.+.+++||+||++.+++..+
T Consensus        19 ~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~la~~~~---~~~~~~~~~gt~al~~~~~~~~   75 (393)
T 1mdo_A           19 GAEELAAVKTVLDSGWI-----TTGPKNQELEAAFCRLTG---NQYAVAVSSATAGMHIALMALG   75 (393)
T ss_dssp             CHHHHHHHHHHHHHTCC-----SSSHHHHHHHHHHHHHHC---CSEEEEESCHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHhcCCc-----CCChHHHHHHHHHHHHhC---CCcEEEecChHHHHHHHHHHcC
Confidence            47889999999876422     134667788899999875   4589999999999999998763

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=95.98  E-value=0.019  Score=47.32  Aligned_cols=63  Identities=5%  Similarity=-0.067  Sum_probs=41.4

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCC--CChHHHHHHHHHHhhc--CCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPEN--VYEPALECAELLLQGV--GKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~--~~~~~~~LAe~L~~~~--P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      .+|++.+++.+++++... .+...  ..+...++++.+.+..  +-+ .+.++++++|+||++.+++..
T Consensus        55 ~~~~v~~a~~~~~~~~~~-~y~~~~g~~~l~~~la~~l~~~~g~~~~-~~~v~~t~g~~~al~~~~~~l  121 (406)
T 1xi9_A           55 PPEHMKEAYCKAIKEGHN-YYGDSEGLPELRKAIVEREKRKNGVDIT-PDDVRVTAAVTEALQLIFGAL  121 (406)
T ss_dssp             CCHHHHHHHHHHHHTTCC-SCCCTTCCHHHHHHHHHHHHHHHCCCCC-GGGEEEESHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCC-CCCCCCCcHHHHHHHHHHHHHhcCCCCC-HHHEEEcCChHHHHHHHHHHh
Confidence            368999999999876321 11111  1233455666665432  222 468999999999999999876

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=95.95  E-value=0.03  Score=46.30  Aligned_cols=62  Identities=15%  Similarity=-0.024  Sum_probs=44.5

Q ss_pred             cHHHHHHHHHHHHhcCccCCC-C-CCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHVMFP-E-NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~-~-~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      +|++.+++.+++++....... . -..+...++.++|.+..+   .+.+++++||+||++.+++..+
T Consensus        15 ~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g---~~~~i~~~~gt~al~~~~~~~~   78 (418)
T 2c81_A           15 SDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNG---VPYCVPTTSGSTALMLALEALG   78 (418)
T ss_dssp             CHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhC---CCcEEEeCCHHHHHHHHHHHcC
Confidence            689999999999774321110 0 112336788889988874   4578889999999999998764

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=95.94  E-value=0.02  Score=47.72  Aligned_cols=61  Identities=16%  Similarity=0.130  Sum_probs=41.1

Q ss_pred             CcHHHHHHHHHHHHhcCcc-CCCCCCC-hHHHHHHHHHHhhc----CCCCCCcEEEeCChHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHV-MFPENVY-EPALECAELLLQGV----GKGWASRAYFSDNGSTAIEIAL   66 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~-~~~~~~~-~~~~~LAe~L~~~~----P~~~l~~v~f~~SGSEA~E~Al   66 (158)
                      .+|+|++|+.++++++... ....|.. +...+|.++|++..    +-. .+.++|+++|+||++.+.
T Consensus        83 ~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~-~~~i~~t~G~~~al~~~~  149 (449)
T 3qgu_A           83 LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRA-ADEIFISDGSKCDIARIQ  149 (449)
T ss_dssp             CCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCC-GGGEEEESCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCC-HHHEEEccCHHHHHHHHH
Confidence            4789999999999865421 1113322 22456667777665    333 468999999999999873

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=95.91  E-value=0.0098  Score=48.70  Aligned_cols=63  Identities=11%  Similarity=-0.031  Sum_probs=39.3

Q ss_pred             CCcHHHHHHHHHHHHhc-CccCC-CCC-----CChHHHHHH-HHHHhhcCCCCCCcE-EEeCChHHHHHHHHHHH
Q 031493            4 WFQIELARDMGYTAARF-GHVMF-PEN-----VYEPALECA-ELLLQGVGKGWASRA-YFSDNGSTAIEIALKMA   69 (158)
Q Consensus         4 h~hP~Iv~Av~eQl~~l-~~~~~-~~~-----~~~~~~~LA-e~L~~~~P~~~l~~v-~f~~SGSEA~E~AlKlA   69 (158)
                      +.||+|++|+.+++... .+... ..+     ..+...+++ +++.+..+   .+.+ ++++||++|++.|++..
T Consensus        43 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~v~~~~Gs~a~~~al~~~  114 (425)
T 3ecd_A           43 IVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLFN---AGHANVQPHSGAQANGAVMLAL  114 (425)
T ss_dssp             CCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHHT---CSEEECCCSSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHhC---CCCceeecCchHHHHHHHHHHc
Confidence            45899999999987432 11100 011     123445666 55666654   4455 45899999999999876

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=95.88  E-value=0.0039  Score=50.14  Aligned_cols=58  Identities=16%  Similarity=0.108  Sum_probs=41.4

Q ss_pred             cHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHh
Q 031493            6 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR   71 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~   71 (158)
                      ||+|++|+.++++.   ..  ....+...+|.++|++..+   .+...+++||++|++.|++....
T Consensus        28 ~p~v~~ai~~~~~~---~~--~~~~~~~~~l~~~la~~~~---~~~~i~~~~g~~a~~~a~~~~~~   85 (359)
T 3pj0_A           28 LTEALQNIDDNLES---DI--YGNGAVIEDFETKIAKILG---KQSAVFFPSGTMAQQIALRIWAD   85 (359)
T ss_dssp             HHHHTTTSCTTCBC---CB--TTBSHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhhccc---Cc--ccCCHHHHHHHHHHHHHhC---CCcEEEeCCHHHHHHHHHHHHHh
Confidence            68888888774321   11  1235667788899998875   34556779999999999998765

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=95.88  E-value=0.015  Score=48.10  Aligned_cols=62  Identities=11%  Similarity=0.111  Sum_probs=39.0

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCC--CCChHHHHHHHHHHhhcC--CCCCCcEEEeCChHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPE--NVYEPALECAELLLQGVG--KGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~--~~~~~~~~LAe~L~~~~P--~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      .+|++.+++ +++++... .+..  ...+...++++.+.+..+  .+ .+.+++++||+||++.+++..
T Consensus        57 ~~~~v~~a~-~~l~~~~~-~y~~~~g~~~l~~~la~~~~~~~g~~~~-~~~v~~~~g~t~a~~~~~~~~  122 (409)
T 2gb3_A           57 TPEVFFERI-YENKPEVV-YYSHSAGIWELREAFASYYKRRQRVDVK-PENVLVTNGGSEAILFSFAVI  122 (409)
T ss_dssp             CCTHHHHHH-HHTCCSSC-CCCCTTCCHHHHHHHHHHHHHTSCCCCC-GGGEEEESHHHHHHHHHHHHH
T ss_pred             CCHHHHHHH-HHHhcCCC-CCCCCCCcHHHHHHHHHHHHHHhCCCCC-HHHEEEeCCHHHHHHHHHHHh
Confidence            368999999 88754211 1111  122334456665554321  12 468999999999999999976

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=95.82  E-value=0.00047  Score=56.96  Aligned_cols=55  Identities=9%  Similarity=-0.038  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCccccccCCCcccccccceeEecccccccccCCC
Q 031493           32 PALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLVDFLGKDTTEKCVELKHLKDHIMVILWVPWK  111 (158)
Q Consensus        32 ~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~  111 (158)
                      ...++.++|.++.+..  +.++|++|||||+++++++..      .|.                +||.          ..
T Consensus        36 ~~~~~~~~l~~~~~~~--~~v~~~~sgt~a~~~~~~~~~------~gd----------------~vi~----------~~   81 (379)
T 3ke3_A           36 VMNDLLSNLKTVYNAE--AAVIIPGSGTYGMEAVARQLT------IDE----------------DCLI----------IR   81 (379)
T ss_dssp             HHHHHHHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHC------TTC----------------EEEE----------EE
T ss_pred             HHHHHHHHHHHHhCCC--CEEEEcCChhHHHHHHHHhCC------CCC----------------eEEE----------Ee
Confidence            4456778888877532  578999999999999986432      121                5888          88


Q ss_pred             CCcCCcCcc
Q 031493          112 LKHHHLTQG  120 (158)
Q Consensus       112 ~~yHG~T~g  120 (158)
                      .+|||.+.+
T Consensus        82 ~~~~~~~~~   90 (379)
T 3ke3_A           82 NGWFSYRWT   90 (379)
T ss_dssp             CSHHHHHHH
T ss_pred             CCchhHHHH
Confidence            899997654

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=95.77  E-value=0.0046  Score=50.40  Aligned_cols=67  Identities=12%  Similarity=-0.073  Sum_probs=46.8

Q ss_pred             CCCcHHHHHHHHHHHHhcCccCCCC-----CCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            3 RWFQIELARDMGYTAARFGHVMFPE-----NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         3 Gh~hP~Iv~Av~eQl~~l~~~~~~~-----~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      +..+|++++|+.+++++........     ...+...++.++|++..+-+ .+.++++++|+||++.+++...
T Consensus        30 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~v~~~~g~t~al~~~~~~l~  101 (400)
T 3vax_A           30 TRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAE-PDELIFTSGATESNNIALLGLA  101 (400)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCC-GGGEEEESCHHHHHHHHHHTTH
T ss_pred             CCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCC-CCcEEEeCCHHHHHHHHHHHHH
Confidence            3458999999999987642110000     11233567888888877543 4689999999999999999775

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=95.77  E-value=0.0097  Score=50.48  Aligned_cols=66  Identities=5%  Similarity=-0.001  Sum_probs=41.3

Q ss_pred             CCcHHHHHHHHHHHHhcC----ccCCCCCCChHHHHHHHHHHhhcCC-CCCCcEEEeCChHHHHHHHHHHHH
Q 031493            4 WFQIELARDMGYTAARFG----HVMFPENVYEPALECAELLLQGVGK-GWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         4 h~hP~Iv~Av~eQl~~l~----~~~~~~~~~~~~~~LAe~L~~~~P~-~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      +.+|+|.+++.+++++..    .+....-..+....+++.+.+..+. . .+.++++++|+||++.+++...
T Consensus        91 ~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~-~~~v~~t~G~~~al~~~~~~l~  161 (448)
T 3aow_A           91 FPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQ-DNDIMITSGSQQALDLIGRVFL  161 (448)
T ss_dssp             SCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCT-TSEEEEESSHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCC-hhhEEEeCcHHHHHHHHHHHHc
Confidence            567899999999987631    1110001122334455554333232 3 5789999999999999999763

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=95.68  E-value=0.017  Score=47.59  Aligned_cols=65  Identities=9%  Similarity=-0.028  Sum_probs=40.2

Q ss_pred             CCcHHHHHHHHHHHHhcCccCCCC--CCChHHHHHHHHHHhh--------cCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            4 WFQIELARDMGYTAARFGHVMFPE--NVYEPALECAELLLQG--------VGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         4 h~hP~Iv~Av~eQl~~l~~~~~~~--~~~~~~~~LAe~L~~~--------~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      ..+|+|.+|+.+++++.....+..  ...+....+|+.+.+.        .+-. .+.++++++|+||++.+++..
T Consensus        50 ~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~-~~~v~~~~g~~~al~~~~~~l  124 (416)
T 1bw0_A           50 LTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIV-KDNVVLCSGGSHGILMAITAI  124 (416)
T ss_dssp             CCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCC-GGGEEEESHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCC-cceEEEeCChHHHHHHHHHHh
Confidence            347899999999987632111111  1122334455555421        0112 468999999999999999876

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=95.65  E-value=0.018  Score=47.91  Aligned_cols=40  Identities=15%  Similarity=0.008  Sum_probs=34.1

Q ss_pred             CCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493           27 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus        27 ~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      .+.++...+|.++|+++.+   .+.+++++||+||+++|++..
T Consensus        62 r~~~~~~~~l~~~la~~~g---~~~~~~~~sGt~A~~~al~~~  101 (392)
T 3qhx_A           62 RTGNPTRTALEAALAAVED---AAFGRAFSSGMAAADCALRAM  101 (392)
T ss_dssp             TTCCHHHHHHHHHHHHHTT---CSEEEEESSHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHhC---CCcEEEECCHHHHHHHHHHHH
Confidence            4567888899999999875   457999999999999999966

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=95.63  E-value=0.058  Score=44.74  Aligned_cols=56  Identities=13%  Similarity=-0.019  Sum_probs=44.0

Q ss_pred             cHHHHHHHHHHHHhcCccCCCCCC--ChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHVMFPENV--YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~~~~--~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .|++.+++.++++...      +.  .+...+|.++|++...   .+.+++++||+||++.+++...
T Consensus        31 p~~~~~a~~~~~~~~~------y~~~~~~~~~l~~~la~~~~---~~~v~~~~ggt~al~~~l~~l~   88 (424)
T 2po3_A           31 RARLYERLDRALDSQW------LSNGGPLVREFEERVAGLAG---VRHAVATCNATAGLQLLAHAAG   88 (424)
T ss_dssp             HHHHHHHHHHHHHHTC------CSSSCHHHHHHHHHHHHHHT---SSEEEEESCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHhcCC------cccCCHHHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHcC
Confidence            4688999988886521      22  3667788899999875   4689999999999999999764

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=95.63  E-value=0.0035  Score=50.97  Aligned_cols=61  Identities=10%  Similarity=0.009  Sum_probs=43.2

Q ss_pred             CCCcHHHHHHHHHHHHhcCccCCCCC-CChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            3 RWFQIELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         3 Gh~hP~Iv~Av~eQl~~l~~~~~~~~-~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      ++.+|+|.+|+.++++.  +  . .. ..+...++.+.|++...-+ .+.++++++|+||++.+++..
T Consensus        18 ~~~~~~v~~a~~~~~~~--~--~-~~~~~~~~~~l~~~la~~~g~~-~~~v~~t~g~t~a~~~~~~~~   79 (392)
T 2z9v_A           18 VNAYPEVLRGLGRTVLY--D--Y-DPAFQLLYEKVVDKAQKAMRLS-NKPVILHGEPVLGLEAAAASL   79 (392)
T ss_dssp             CCCCHHHHHHTTSCCCC--T--T-SHHHHHHHHHHHHHHHHHTTCS-SCCEEESSCTHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHhccccc--c--c-cHHHHHHHHHHHHHHHHHhCCC-CCEEEEeCCchHHHHHHHHHh
Confidence            45688999998876542  1  1 11 1223456778888877543 468999999999999999977

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=95.60  E-value=0.0032  Score=50.88  Aligned_cols=63  Identities=11%  Similarity=0.024  Sum_probs=41.9

Q ss_pred             CCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            3 RWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         3 Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      ++-+|++.+|+.+++..  +..  ....+...++++.|.+..+.+..+.+++++||+||++.+++..
T Consensus        29 ~~~~~~v~~a~~~~~~~--~~~--~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l   91 (386)
T 2dr1_A           29 VACFPEVLEIMKVQMFS--HRS--KEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNG   91 (386)
T ss_dssp             CCCCHHHHHHTTSCCCC--TTS--HHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHhccccc--ccC--HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHh
Confidence            35578888888766431  110  0113456678888888765221246899999999999999875

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=95.58  E-value=0.0033  Score=51.15  Aligned_cols=60  Identities=12%  Similarity=0.001  Sum_probs=41.4

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCC-cEEEeCChHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS-RAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~-~v~f~~SGSEA~E~AlKlA   69 (158)
                      .+|+|.+|+.++++.  +.  .....+...++.+.|++..+.+ .+ .+++++||+||++.+++..
T Consensus        30 ~~~~v~~a~~~~~~~--~~--~~~~~~~~~~l~~~la~~~g~~-~~~~i~~~~g~t~a~~~~~~~~   90 (393)
T 2huf_A           30 APQRVLDAMSRPILG--HL--HPETLKIMDDIKEGVRYLFQTN-NIATFCLSASGHGGMEATLCNL   90 (393)
T ss_dssp             CCHHHHHHTTSCCCC--TT--SHHHHHHHHHHHHHHHHHHTCC-CSEEEEESSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhhhcc--CC--CHHHHHHHHHHHHHHHHHhCCC-CCcEEEEcCcHHHHHHHHHHHH
Confidence            468888888776432  11  0112234567888888877533 33 7999999999999999877

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=95.57  E-value=0.062  Score=43.89  Aligned_cols=61  Identities=10%  Similarity=-0.078  Sum_probs=43.4

Q ss_pred             cHHHHHHHHHHHHhcCccC---CCCC-CChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHVM---FPEN-VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~---~~~~-~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      +|+|.+|+.+++++.....   ...+ ..+...++.++|++..+.  -+.+++ +||++|++.++++.
T Consensus        62 ~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~~~i~~-~sG~~a~~~~~~~l  126 (401)
T 2bwn_A           62 HPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK--EAALVF-SSAYNANDATLSTL  126 (401)
T ss_dssp             CHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC--SEEEEE-SCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCC--CcEEEE-CCcHHHHHHHHHHH
Confidence            7899999999998754311   1112 345678899999998752  234444 88999999999874

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=95.54  E-value=0.0051  Score=49.00  Aligned_cols=60  Identities=15%  Similarity=0.159  Sum_probs=42.0

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCC-CChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~-~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      -+|+|++|+.++++.    .. .. ..+...++.+.|++..+.+ .+.++++++|+||++.+++...
T Consensus        12 ~~~~v~~a~~~~~~~----~~-~~~~~~~~~~l~~~la~~~g~~-~~~i~~~~g~t~a~~~~~~~~~   72 (352)
T 1iug_A           12 LHPKALEALARPQLH----HR-TEAAREVFLKARGLLREAFRTE-GEVLILTGSGTLAMEALVKNLF   72 (352)
T ss_dssp             CCHHHHHHHHSCCCC----TT-SHHHHHHHHHHHHHHHHHHTCS-SEEEEEESCHHHHHHHHHHHHC
T ss_pred             CCHHHHHHhccCCCC----cc-CHHHHHHHHHHHHHHHHHhCCC-CceEEEcCchHHHHHHHHHhcc
Confidence            368899998876531    11 11 1223467888888877533 3589999999999999998763

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=95.52  E-value=0.04  Score=45.37  Aligned_cols=58  Identities=10%  Similarity=-0.034  Sum_probs=41.7

Q ss_pred             cHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .|++.+++.+.++.. +..   ...+...++.++|++...   .+.+++++||+||++.+++..+
T Consensus        11 ~~~v~~a~~~~~~~~-~~~---~~g~~~~~l~~~la~~~~---~~~v~~~~ggt~al~~~~~~l~   68 (394)
T 1o69_A           11 GGNELKYIEEVFKSN-YIA---PLGEFVNRFEQSVKDYSK---SENALALNSATAALHLALRVAG   68 (394)
T ss_dssp             -CCHHHHHHHHHHHT-TTS---CTTHHHHHHHHHHHHHHC---CSEEEEESCHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHcC-Ccc---CCChHHHHHHHHHHHHhC---CCcEEEeCCHHHHHHHHHHHcC
Confidence            456778888777652 211   112456788888988874   4689999999999999998763

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=95.51  E-value=0.0052  Score=50.21  Aligned_cols=67  Identities=15%  Similarity=0.020  Sum_probs=41.6

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEE-EeCChHHHHHHHHHHH
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAY-FSDNGSTAIEIALKMA   69 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~-f~~SGSEA~E~AlKlA   69 (158)
                      |+...+.+.+++.+++.+...........+...++.+.|.+..+.+ .+.++ +++||++|++.+++..
T Consensus        15 ~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~~~~~~~s~t~al~~~~~~l   82 (416)
T 3isl_A           15 MTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTK-NRWAYPIDGTSRAGIEAVLASV   82 (416)
T ss_dssp             CSSSSCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCC-CSEEEEEESCHHHHHHHHHHHH
T ss_pred             ecCCCcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCC-CCcEEEecCcHHHHHHHHHHHh
Confidence            6666666666766665542111100001233567888888887644 34454 8899999999999865

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=95.49  E-value=0.012  Score=47.12  Aligned_cols=61  Identities=13%  Similarity=0.060  Sum_probs=41.4

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcC---CCCCCcEEEeCChHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVG---KGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P---~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      .+|++.+|+.+++++...   ..++.....++.+.|++...   -. .+.++++++|+||++.+++..
T Consensus        33 ~~~~v~~a~~~~~~~~~~---~~y~~~~~~~lr~~la~~~~~~~~~-~~~v~~~~G~~~al~~~~~~~   96 (335)
T 1uu1_A           33 FPEDLVDEVFRRLNSDAL---RIYYDSPDEELIEKILSYLDTDFLS-KNNVSVGNGADEIIYVMMLMF   96 (335)
T ss_dssp             CCHHHHHHHHHTCCGGGG---GSCCCSSCHHHHHHHHHHHTCSSCC-GGGEEEESSHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHhhhhhh---hcCCCCchHHHHHHHHHHcCCCCCC-HHHEEEcCChHHHHHHHHHHh
Confidence            479999999988732111   12222224556667776654   23 468999999999999999865

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=95.46  E-value=0.023  Score=47.02  Aligned_cols=40  Identities=13%  Similarity=-0.073  Sum_probs=32.6

Q ss_pred             CCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493           27 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus        27 ~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      .+.++...++.++|++..+   .+.+++.+||+||++.|++..
T Consensus        61 r~~~~~~~~l~~~la~~~g---~~~~i~~~sG~~a~~~~l~~~  100 (398)
T 1gc0_A           61 RISNPTLNLLEARMASLEG---GEAGLALASGMGAITSTLWTL  100 (398)
T ss_dssp             --CCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHhC---CCcEEEECCHHHHHHHHHHHH
Confidence            4567888899999999885   347788899999999999976

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=95.42  E-value=0.016  Score=46.48  Aligned_cols=60  Identities=7%  Similarity=-0.087  Sum_probs=43.0

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .+|+|.+++.++++...     .++.+...+|.+.|++..+-+ .+.++++++|+||++++++...
T Consensus        29 ~~~~v~~a~~~~~~~~~-----~y~~~~~~~lr~~la~~~~~~-~~~i~~t~g~~~al~~~~~~l~   88 (350)
T 3fkd_A           29 DKDHLEKHLVENLNCIR-----HYPEPDAGTLRQMLAKRNSVD-NNAILVTNGPTAAFYQIAQAFR   88 (350)
T ss_dssp             CCHHHHHHHHHTGGGGG-----SCCCTTCHHHHHHHHHHTTCC-GGGEEEESHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHhHhHHh-----cCCCCcHHHHHHHHHHHhCcC-HHHEEEcCCHHHHHHHHHHHHC
Confidence            47999999998874432     222222246777788776533 4689999999999999998654

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=95.36  E-value=0.02  Score=46.74  Aligned_cols=64  Identities=13%  Similarity=-0.054  Sum_probs=38.8

Q ss_pred             CCcHHHHHHHHHHHHhcC---ccCC----CCCCChHHHHHH-HHHHhhcCCCCCCcE-EEeCChHHHHHHHHHHHH
Q 031493            4 WFQIELARDMGYTAARFG---HVMF----PENVYEPALECA-ELLLQGVGKGWASRA-YFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         4 h~hP~Iv~Av~eQl~~l~---~~~~----~~~~~~~~~~LA-e~L~~~~P~~~l~~v-~f~~SGSEA~E~AlKlAR   70 (158)
                      |.||+|++|+.+|+.+..   +...    .....+...+++ +++.+..+   .+.. ++.+||++|+++|++...
T Consensus        41 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---~~~~~v~~~sGs~a~~~a~~~~~  113 (420)
T 3gbx_A           41 YTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFG---ADYANVQPHSGSQANFAVYTALL  113 (420)
T ss_dssp             CCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHT---CSEEECCCSSHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhC---CCCceeEecCcHHHHHHHHHHhc
Confidence            579999999999984421   1100    011234445555 56666664   3333 346889999999998764

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=95.32  E-value=0.016  Score=46.60  Aligned_cols=64  Identities=13%  Similarity=0.021  Sum_probs=44.4

Q ss_pred             CcHHHHHHHHHHHHhcC-ccCCCCCC-ChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHh
Q 031493            5 FQIELARDMGYTAARFG-HVMFPENV-YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR   71 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~-~~~~~~~~-~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~   71 (158)
                      .||.+.++++++++... ......+. .+...+|.++|++..+   .+...+++||++|++.|++....
T Consensus        19 ~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~---~~~~i~~~~G~~a~~~al~~~~~   84 (357)
T 3lws_A           19 HGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLG---MDDAVFFPSGTMAQQVALRIWSD   84 (357)
T ss_dssp             SSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhC---CCcEEEecCcHHHHHHHHHHHhh
Confidence            36888888888876532 11111232 3456788899999875   34566679999999999998764

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=95.22  E-value=0.024  Score=47.99  Aligned_cols=41  Identities=20%  Similarity=0.082  Sum_probs=34.5

Q ss_pred             CCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493           26 PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus        26 ~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      ..+.++...+|.++|+++.+   .+.+++++||++|+++|++..
T Consensus        76 ~r~~~p~~~~l~~~la~~~g---~~~~~~~~sG~~Ai~~al~~l  116 (414)
T 3ndn_A           76 SRYGNPTVSVFEERLRLIEG---APAAFATASGMAAVFTSLGAL  116 (414)
T ss_dssp             TTTCCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHTT
T ss_pred             CCCCChHHHHHHHHHHHHHC---CCcEEEECCHHHHHHHHHHHH
Confidence            35678888999999999875   468899999999999999754

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=95.20  E-value=0.026  Score=46.74  Aligned_cols=40  Identities=15%  Similarity=-0.010  Sum_probs=33.0

Q ss_pred             CCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493           27 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus        27 ~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      .+.++...+|.++|+++.+   .+.+++++||+||++.+++..
T Consensus        55 ~~~~~~~~~l~~~la~~~g---~~~~i~~~sG~~ai~~~~~~~   94 (389)
T 3acz_A           55 RLGNPTVEQFEEMVCSIEG---AAGSAAFGSGMGAISSSTLAF   94 (389)
T ss_dssp             TTCCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHTTT
T ss_pred             CCCChHHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHH
Confidence            4567888899999999885   347788889999999999755

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=95.17  E-value=0.041  Score=43.57  Aligned_cols=58  Identities=7%  Similarity=0.021  Sum_probs=45.0

Q ss_pred             cHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      +|+|.+++.++++...     .++.+...+|.+.|++..+-. .+.++++++++||++.+++..
T Consensus        31 ~~~v~~a~~~~~~~~~-----~y~~~~~~~lr~~la~~~~~~-~~~i~~t~G~~~~l~~~~~~~   88 (337)
T 3p1t_A           31 EPRVQAAIAAAAARIN-----RYPFDAEPRVMRKLAEHFSCP-EDNLMLVRGIDECFDRISAEF   88 (337)
T ss_dssp             CHHHHHHHHHHGGGTT-----SCCTTHHHHHHHHHHHHHTSC-GGGEEEESHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHhhhhhc-----cCCCCchHHHHHHHHHHhCcC-HHHEEEeCCHHHHHHHHHHhc
Confidence            6899999998876532     345566678888888887544 468999999999999999864

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=95.14  E-value=0.0048  Score=49.82  Aligned_cols=60  Identities=15%  Similarity=0.055  Sum_probs=39.5

Q ss_pred             cHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      +|+|++|+.+++  ..+..  ....+...++.++|.+..+....+.+++++||++|++.|++..
T Consensus        35 ~~~v~~a~~~~~--~~~~~--~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~   94 (393)
T 3kgw_A           35 APRVLAAGSLRM--IGHMQ--KEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNL   94 (393)
T ss_dssp             CHHHHHHTTCCC--CCTTS--HHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHH
T ss_pred             CHHHHHHhcccc--cCccc--HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhc
Confidence            677888776643  11110  0112345678888888875431235899999999999999976

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=95.11  E-value=0.026  Score=45.89  Aligned_cols=64  Identities=16%  Similarity=0.112  Sum_probs=37.4

Q ss_pred             HHHHHHHHH-HHHhcCccCCCC-C-CChHHHHHHHHHHhhcCC--CCCC--cEEEeCChHHHHHHHHHHHHh
Q 031493            7 IELARDMGY-TAARFGHVMFPE-N-VYEPALECAELLLQGVGK--GWAS--RAYFSDNGSTAIEIALKMAFR   71 (158)
Q Consensus         7 P~Iv~Av~e-Ql~~l~~~~~~~-~-~~~~~~~LAe~L~~~~P~--~~l~--~v~f~~SGSEA~E~AlKlAR~   71 (158)
                      |+|.+|+.+ +++......+.. . ..+...++++.+......  . .+  .++++++|+||++.++++...
T Consensus        47 ~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~-~~~~~i~~t~g~~~a~~~~~~~~~~  117 (397)
T 3fsl_A           47 QAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLK-QQRVATIQTLGGSGALKVGADFLKR  117 (397)
T ss_dssp             HHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH-TTCEEEEEESHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCccccc-ccceEEEEcCCcHHHHHHHHHHHHh
Confidence            899999998 775422111111 1 112233444444332110  1 35  789999999999999987654

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=95.05  E-value=0.012  Score=49.09  Aligned_cols=65  Identities=5%  Similarity=-0.139  Sum_probs=38.3

Q ss_pred             CcHHHHHHHHHHHHhcCccC--------CCCCCC-hHHHHHHHHHHhhcC--------CCCCCcEEEeCChHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVM--------FPENVY-EPALECAELLLQGVG--------KGWASRAYFSDNGSTAIEIALK   67 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~--------~~~~~~-~~~~~LAe~L~~~~P--------~~~l~~v~f~~SGSEA~E~AlK   67 (158)
                      .+|.+.++++++.....+..        ...|.. ....+|.++|++...        -. .+.++++++|+||++.+++
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~-~~~v~~~~gg~~a~~~~~~  129 (435)
T 3piu_A           51 CFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFD-PNHLVLTAGATSANETFIF  129 (435)
T ss_dssp             SHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCC-GGGEEEEEHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCC-HHHEEEcCChHHHHHHHHH
Confidence            47888888888765443210        001111 111234444444332        12 4689999999999999998


Q ss_pred             HHH
Q 031493           68 MAF   70 (158)
Q Consensus        68 lAR   70 (158)
                      ...
T Consensus       130 ~l~  132 (435)
T 3piu_A          130 CLA  132 (435)
T ss_dssp             HHC
T ss_pred             Hhc
Confidence            775

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=94.96  E-value=0.041  Score=46.94  Aligned_cols=62  Identities=11%  Similarity=0.033  Sum_probs=43.7

Q ss_pred             CCCcHHHHHHHHHHHHhcCccCCCCCCC--------hHHHHHHHHHHhhcCCCCCCc-EEEeCChHHHHHHHHHHHHhc
Q 031493            3 RWFQIELARDMGYTAARFGHVMFPENVY--------EPALECAELLLQGVGKGWASR-AYFSDNGSTAIEIALKMAFRK   72 (158)
Q Consensus         3 Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~--------~~~~~LAe~L~~~~P~~~l~~-v~f~~SGSEA~E~AlKlAR~~   72 (158)
                      +|.+|++++++.++   +..++  .+..        +...++++.|+++.+   ++. ++++++|+||+.+|++++|.+
T Consensus        76 ~~~~p~v~~~~~~~---~~~~~--~~~~~~~~~g~~~l~~~l~~~la~~~g---~~~~~~~~~ggt~a~~~al~~~~~~  146 (474)
T 1wyu_B           76 MKYNPKLHEEAARL---FADLH--PYQDPRTAQGALRLMWELGEYLKALTG---MDAITLEPAAGAHGELTGILIIRAY  146 (474)
T ss_dssp             CCCCCHHHHHHHHT---TSSCC--TTSCGGGCHHHHHHHHHHHHHHHHHHT---CSEEECCCSSHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHH---HHhcC--CCCchhhChHHHHHHHHHHHHHHHHHC---CCceeecChHHHHHHHHHHHHHHHH
Confidence            57789999998876   22222  2222        235678888888875   343 567899999999999999865

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=94.94  E-value=0.068  Score=43.88  Aligned_cols=63  Identities=14%  Similarity=0.099  Sum_probs=42.8

Q ss_pred             CcHHHHHHHHHHHHhcCcc-CCCCCC-ChHHHHHHHHHHhhc--C-CCCCCcEEEeCChHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHV-MFPENV-YEPALECAELLLQGV--G-KGWASRAYFSDNGSTAIEIALKM   68 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~-~~~~~~-~~~~~~LAe~L~~~~--P-~~~l~~v~f~~SGSEA~E~AlKl   68 (158)
                      .+|.|.+++.++++++... ....|. .+...+|.+.|++.+  + -. .+.++++++++||+++++++
T Consensus        47 ~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~-~~~v~~~~G~~~al~~~~~~  114 (400)
T 3asa_A           47 LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVD-AKEIFISDGAKVDLFRLLSF  114 (400)
T ss_dssp             CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSC-GGGEEEESCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCC-HHHEEEccChHHHHHHHHHH
Confidence            4789999999999875321 112332 223456777777763  2 13 46899999999999987654

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=94.87  E-value=0.089  Score=43.54  Aligned_cols=62  Identities=13%  Similarity=0.130  Sum_probs=39.6

Q ss_pred             CcHHHHHHHHHHHHhcCccC-CCCCC-ChHHHHHHHHHHhhc----CCCCCCcEEEeCChHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVM-FPENV-YEPALECAELLLQGV----GKGWASRAYFSDNGSTAIEIALK   67 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~-~~~~~-~~~~~~LAe~L~~~~----P~~~l~~v~f~~SGSEA~E~AlK   67 (158)
                      .+|.|.+|+.++++++.... ...+. .....+|.+.|++..    +.. .+.++|+++++||+++...
T Consensus        70 ~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~-~~~i~~t~G~~~al~~l~~  137 (432)
T 3ei9_A           70 IPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIG-DDDVFVSDGAKCDISRLQV  137 (432)
T ss_dssp             CCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCC-GGGEEEESCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCC-cceEEECCChHHHHHHHHH
Confidence            57999999999998754311 11232 122345555555543    323 4689999999999997433

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=94.82  E-value=0.024  Score=47.72  Aligned_cols=38  Identities=13%  Similarity=0.165  Sum_probs=31.6

Q ss_pred             CCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHH
Q 031493           27 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK   67 (158)
Q Consensus        27 ~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlK   67 (158)
                      .+.++...+|.++|+++.+   .+.+++++||++|++++++
T Consensus        63 r~~~p~~~~l~~~la~l~g---~~~~~~~~sG~~Ai~~~~~  100 (400)
T 3nmy_A           63 RTHNPTRFAYERCVAALEG---GTRAFAFASGMAATSTVME  100 (400)
T ss_dssp             TTCCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHHHhC---CCCEEEecCHHHHHHHHHH
Confidence            5678888999999999885   3578889999999998544

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=94.76  E-value=0.0063  Score=48.50  Aligned_cols=62  Identities=13%  Similarity=0.026  Sum_probs=41.1

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCC-CCCcEEEeCChHHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~-~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .+|+|++|+.+++   .+.. ..+.++...++.++|++..+.+ ..+.++++++|+||++.+++..+
T Consensus        15 ~~~~v~~a~~~~~---~~~~-~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~   77 (366)
T 1m32_A           15 TSRTVKEAMLFDS---CTWD-DDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSAL   77 (366)
T ss_dssp             CCHHHHHTTCCCC---CTTS-HHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSC
T ss_pred             CCHHHHHHHhhhh---cCCC-HHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhc
Confidence            4789999988753   2211 0111244566777787776521 02479999999999999998774

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=94.73  E-value=0.055  Score=45.41  Aligned_cols=40  Identities=18%  Similarity=0.047  Sum_probs=32.6

Q ss_pred             CCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493           27 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus        27 ~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      .+.++...++.++|+++.+   .+..++.+||+||++.|++..
T Consensus        54 ~~~~~~~~~l~~~la~~~g---~~~~v~~~sGt~A~~~~l~~~   93 (421)
T 2ctz_A           54 RIMNPTVDVLEKRLAALEG---GKAALATASGHAAQFLALTTL   93 (421)
T ss_dssp             TTBCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHhC---CCceEEecCHHHHHHHHHHHH
Confidence            4567778899999999885   346677889999999999876

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=94.59  E-value=0.056  Score=46.15  Aligned_cols=62  Identities=15%  Similarity=-0.036  Sum_probs=39.8

Q ss_pred             CCcHHHHHHHHHHHHhcCc---cCCCCCCChHHHHHHHHHHhhcCCCCCCcEEE---eCChHHHHHHHHHH
Q 031493            4 WFQIELARDMGYTAARFGH---VMFPENVYEPALECAELLLQGVGKGWASRAYF---SDNGSTAIEIALKM   68 (158)
Q Consensus         4 h~hP~Iv~Av~eQl~~l~~---~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f---~~SGSEA~E~AlKl   68 (158)
                      +|+++|++|+.++.....+   .....+..+...++.++|++....   +....   .+||++|++++++.
T Consensus        35 ~n~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g~---~~~~~~i~~~sGt~Ai~~al~a  102 (431)
T 3ht4_A           35 SNQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFGA---EAGLVRPQIISGTHAISTALFG  102 (431)
T ss_dssp             HHHHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTTC---SEECCBTTSCSHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhCC---CcccccceeeCHHHHHHHHHHH
Confidence            4678899998876322111   111234556677888999988753   33222   45999999999863

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=94.42  E-value=0.024  Score=46.38  Aligned_cols=65  Identities=12%  Similarity=-0.122  Sum_probs=37.3

Q ss_pred             CCcHHHHHHHHHHHHhcC-ccCC--CCC-CCh---HHH-HHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            4 WFQIELARDMGYTAARFG-HVMF--PEN-VYE---PAL-ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         4 h~hP~Iv~Av~eQl~~l~-~~~~--~~~-~~~---~~~-~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      +.+|+|++|+.+++.+.. ....  ..+ ..+   ... .+.+++.+..+.+ .+. ++.+|||+|++.|++...
T Consensus        36 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~-i~~~sGt~a~~~~~~~~~  108 (417)
T 3n0l_A           36 FTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCK-FAN-VQPNSGSQANQGVYAALI  108 (417)
T ss_dssp             CCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS-EEE-CCCSSHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCC-Ccc-eEeccHHHHHHHHHHHhc
Confidence            458999999998874321 1000  001 112   222 2344666666532 223 455889999999998773

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=94.35  E-value=0.024  Score=47.72  Aligned_cols=68  Identities=6%  Similarity=0.003  Sum_probs=45.1

Q ss_pred             CCCCcHHHHHHHHHHHHhcCcc----CCCCC--CChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            2 FRWFQIELARDMGYTAARFGHV----MFPEN--VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~----~~~~~--~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      +|..++.+.+++.++++.....    +....  ..+...++.++|++..+-+ .+.|+|+++++++++.+++...
T Consensus        76 ~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~v~~t~g~t~al~~~~~~~~  149 (465)
T 3e9k_A           76 LGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGAN-EKEIALMNALTVNLHLLMLSFF  149 (465)
T ss_dssp             SCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCC-GGGEEECSCHHHHHHHHHHHHC
T ss_pred             cCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCC-cCCEEEECCHHHHHHHHHHHhc
Confidence            4666778888888887653311    11011  1122355777787777644 5689999999999999998764

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=94.28  E-value=0.051  Score=44.21  Aligned_cols=62  Identities=16%  Similarity=0.038  Sum_probs=37.8

Q ss_pred             cHHHHHHHHHHHHh-cCc-cCCCCC--CChH---HHHHH-HHHHhhcCCCCCCcE-EEeCChHHHHHHHHHHHH
Q 031493            6 QIELARDMGYTAAR-FGH-VMFPEN--VYEP---ALECA-ELLLQGVGKGWASRA-YFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         6 hP~Iv~Av~eQl~~-l~~-~~~~~~--~~~~---~~~LA-e~L~~~~P~~~l~~v-~f~~SGSEA~E~AlKlAR   70 (158)
                      +|+|.+|+.+++++ ..+ +....+  ..+.   ..+++ ++|.+..+   .+.. ++.+|||+|++.|++.+.
T Consensus        36 ~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g---~~~~~i~~~sGt~a~~~~~~~~~  106 (407)
T 2dkj_A           36 SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFG---AAWANVQPHSGSQANMAVYMALM  106 (407)
T ss_dssp             CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT---CSEEECCCSSHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhC---CCcceEEecchHHHHHHHHHHhc
Confidence            89999999999864 211 110011  2222   22222 36777664   3343 567889999999999873

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=94.20  E-value=0.018  Score=46.83  Aligned_cols=59  Identities=15%  Similarity=0.068  Sum_probs=38.3

Q ss_pred             cHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCC-cEEEeCChHHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS-RAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~-~v~f~~SGSEA~E~AlKlA   69 (158)
                      +|+|.+|+.+++  +.+..  ....+...++.++|.+..+.+ .+ .+++++||++|++.+++..
T Consensus        25 ~~~v~~a~~~~~--~~~~~--~~~~~~~~~~~~~la~~~~~~-~~~~v~~~~sgt~al~~~~~~~   84 (411)
T 3nnk_A           25 DPRVLRAMSSQL--IGQYD--PAMTHYMNEVMALYRGVFRTE-NRWTMLVDGTSRAGIEAILVSA   84 (411)
T ss_dssp             CHHHHHHHTSCC--CCTTC--HHHHHHHHHHHHHHHHHHTCC-CSEEEEEESCHHHHHHHHHHHH
T ss_pred             CHHHHHHhhccc--ccccc--HHHHHHHHHHHHHHHHHhCCC-CCcEEEECCCcHHHHHHHHHHh
Confidence            677777776553  11110  001233467778888877544 33 3789999999999999977

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=94.17  E-value=0.016  Score=46.68  Aligned_cols=61  Identities=10%  Similarity=0.060  Sum_probs=37.7

Q ss_pred             cHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCC-CCCcEEEeCChHHHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~-~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      +|+|++|+.+|+.  .+..  ....+...++.++|.+...-+ ..+.+++++||+||++++++...
T Consensus        31 ~~~v~~a~~~~~~--~~~~--~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~   92 (376)
T 3f0h_A           31 SEEVRAIGAEQVP--YFRT--TEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF   92 (376)
T ss_dssp             CHHHHHHHTSCCC--CCSS--HHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC
T ss_pred             cHHHHHHhcCCCC--CCCC--HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc
Confidence            6788888876642  1110  011234456777777765422 02346668999999999998764

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=94.02  E-value=0.062  Score=44.32  Aligned_cols=65  Identities=9%  Similarity=-0.137  Sum_probs=40.7

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCC--CChHHHHHHHHHHhhcC--CCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMFPEN--VYEPALECAELLLQGVG--KGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~--~~~~~~~LAe~L~~~~P--~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .+|+|.+|+.+++++-....+...  ..+...++|+.+.+...  -. .+.++++++|+||++++++...
T Consensus        58 ~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~-~~~i~~t~g~t~al~~~~~~l~  126 (437)
T 3g0t_A           58 APQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIP-ARACVPTVGSMQGCFVSFLVAN  126 (437)
T ss_dssp             CCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCC-GGGEEEESHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCC-cccEEEeCCHHHHHHHHHHHHh
Confidence            479999999999875210111111  12333445555543211  12 4589999999999999999875

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=93.98  E-value=0.11  Score=44.36  Aligned_cols=37  Identities=14%  Similarity=0.156  Sum_probs=28.3

Q ss_pred             HHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhc
Q 031493           36 CAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRK   72 (158)
Q Consensus        36 LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~   72 (158)
                      +.+.|+++.+-+..+.+.|+++|||||+.|++.||.+
T Consensus       145 ~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~  181 (497)
T 2qma_A          145 VVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDW  181 (497)
T ss_dssp             HHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHH
Confidence            4556777764220267999999999999999999864

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=93.82  E-value=0.21  Score=41.25  Aligned_cols=64  Identities=11%  Similarity=-0.024  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHhcCccCCCC-C-CChHHHHHHHHHHhhcCC--CCCC--cEEEeCChHHHHHHHHHHHHh
Q 031493            7 IELARDMGYTAARFGHVMFPE-N-VYEPALECAELLLQGVGK--GWAS--RAYFSDNGSTAIEIALKMAFR   71 (158)
Q Consensus         7 P~Iv~Av~eQl~~l~~~~~~~-~-~~~~~~~LAe~L~~~~P~--~~l~--~v~f~~SGSEA~E~AlKlAR~   71 (158)
                      |.|.+|+.+++++.....+.. . ..+....+++.+......  . .+  .++++++|+||++.++++...
T Consensus        70 ~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~-~~~~~i~~t~G~t~al~~~~~~~~~  139 (420)
T 4f4e_A           70 RAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIA-AGRVVTAQALGGTGALKIGADFLRT  139 (420)
T ss_dssp             HHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHH-TTCEEEEEEEHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccc-cCceEEEECCccHHHHHHHHHHHHH
Confidence            899999999987621111101 1 122234455544332110  1 24  789999999999999987654

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=93.71  E-value=0.029  Score=45.46  Aligned_cols=60  Identities=13%  Similarity=0.083  Sum_probs=39.3

Q ss_pred             cHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCC-cEEEeCChHHHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWAS-RAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~-~v~f~~SGSEA~E~AlKlAR   70 (158)
                      +|++++|+.+++..    .+.....+...++.++|++..+.+ .+ .++++++|+||++.+++...
T Consensus        30 ~~~v~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~~~~-~~~~v~~~~g~t~al~~~~~~~~   90 (396)
T 2ch1_A           30 SKRVLTAMTNTVLS----NFHAELFRTMDEVKDGLRYIFQTE-NRATMCVSGSAHAGMEAMLSNLL   90 (396)
T ss_dssp             CHHHHHHTTSCCCC----TTCHHHHHHHHHHHHHHHHHHTCC-CSCEEEESSCHHHHHHHHHHHHC
T ss_pred             CHHHHHHhcccccc----CCChhHHHHHHHHHHHHHHHhCCC-CCcEEEECCcHHHHHHHHHHHhc
Confidence            56777776654311    110111123567888888887644 45 79999999999999998773

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=93.65  E-value=0.064  Score=43.84  Aligned_cols=23  Identities=4%  Similarity=0.054  Sum_probs=20.3

Q ss_pred             CCcEEEeCChHHHHHHHHHHHHh
Q 031493           49 ASRAYFSDNGSTAIEIALKMAFR   71 (158)
Q Consensus        49 l~~v~f~~SGSEA~E~AlKlAR~   71 (158)
                      .+.|+++++|+||++.+++....
T Consensus        98 ~~~i~~t~G~t~al~~~~~~l~~  120 (417)
T 3g7q_A           98 PQNIALTNGSQSAFFYLFNLFAG  120 (417)
T ss_dssp             GGGEEEESCHHHHHHHHHHHHSB
T ss_pred             cccEEEeCCcHHHHHHHHHHHcC
Confidence            46899999999999999998753

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=93.65  E-value=0.011  Score=49.04  Aligned_cols=61  Identities=7%  Similarity=-0.101  Sum_probs=35.7

Q ss_pred             cHHH--HHHHHHHHHhcCccCCCCCCCh-HHHHHHHHHHhhc-----CCCCCCc---EEEeCChHHHHHHHHHHHH
Q 031493            6 QIEL--ARDMGYTAARFGHVMFPENVYE-PALECAELLLQGV-----GKGWASR---AYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         6 hP~I--v~Av~eQl~~l~~~~~~~~~~~-~~~~LAe~L~~~~-----P~~~l~~---v~f~~SGSEA~E~AlKlAR   70 (158)
                      +|.+  ++++.+++++...   ..|... ...+|.+.|++..     +-. .+.   ++++++|+||++.+++...
T Consensus        63 ~~~~~~~~a~~~~~~~~~~---~~y~~~~g~~~lr~~ia~~~~~~~~~~~-~~~~~~i~~t~g~~~al~~~~~~l~  134 (430)
T 2x5f_A           63 KMFASSLDAMFNDLTPDEI---FPYAPPQGIEELRDLWQQKMLRDNPELS-IDNMSRPIVTNALTHGLSLVGDLFV  134 (430)
T ss_dssp             ECCCHHHHTTBSSCCGGGT---SSCCCTTCCHHHHHHHHHHHHHHCTTCC-GGGBCCCEEESHHHHHHHHHHHHHC
T ss_pred             chhhHHHHHHHHhcCcccc---cccCCCCCCHHHHHHHHHHHhccCcccC-CCccceEEEcCCchHHHHHHHHHHh
Confidence            5666  7777776643111   122221 1234444444443     322 356   9999999999999998663

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=93.59  E-value=0.13  Score=42.45  Aligned_cols=22  Identities=14%  Similarity=0.081  Sum_probs=19.2

Q ss_pred             CCcEEEeCChHHHHHHHHHHHH
Q 031493           49 ASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus        49 l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .+.++++++|+||++++++...
T Consensus       108 ~~~i~~~~G~~~ai~~~~~~~~  129 (428)
T 1iay_A          108 PERVVMAGGATGANETIIFCLA  129 (428)
T ss_dssp             TTSCEEEEHHHHHHHHHHHHHC
T ss_pred             hhhEEEccChHHHHHHHHHHhC
Confidence            4689999999999999998764

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=93.49  E-value=0.015  Score=46.69  Aligned_cols=57  Identities=11%  Similarity=0.049  Sum_probs=37.6

Q ss_pred             cHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCC--CcEEEeCChHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWA--SRAYFSDNGSTAIEIALKM   68 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l--~~v~f~~SGSEA~E~AlKl   68 (158)
                      +|+|.+|+.+++..  +.  .....+...++.++|.+..+-+ .  +.++++++|+||++ +++.
T Consensus        14 ~~~v~~a~~~~~~~--~~--~~~~~~~~~~~~~~la~~~~~~-~~~~~v~~~~g~t~al~-~~~~   72 (384)
T 3zrp_A           14 KEDVLVAGLENNVG--FT--SKEFVEALAYSLKGLRYVMGAS-KNYQPLIIPGGGTSAME-SVTS   72 (384)
T ss_dssp             CHHHHHHTTCCSCC--TT--SHHHHHHHHHHHHHHHHHHTCC-TTSEEEEEESCHHHHHH-HGGG
T ss_pred             CHHHHHHhhccccc--cc--cHHHHHHHHHHHHHHHHHhCCC-CCCcEEEEcCCcHHHHH-HHHh
Confidence            67788887765421  11  0112334566778888876543 3  67999999999999 8853

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=92.99  E-value=0.18  Score=41.23  Aligned_cols=40  Identities=15%  Similarity=0.118  Sum_probs=31.7

Q ss_pred             CCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493           27 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus        27 ~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      .+.++...+|.++|++..+.   +..++.+||+||++.|++..
T Consensus        48 ~~~~~~~~~l~~~la~~~~~---~~~i~~~sGt~a~~~~~~~~   87 (386)
T 1cs1_A           48 RRGNPTRDVVQRALAELEGG---AGAVLTNTGMSAIHLVTTVF   87 (386)
T ss_dssp             TTCCHHHHHHHHHHHHHHTC---SEEEEESSHHHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHH
Confidence            45677788999999998863   34455588999999999976

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=92.93  E-value=0.13  Score=42.14  Aligned_cols=63  Identities=11%  Similarity=-0.101  Sum_probs=37.9

Q ss_pred             cHHHHHHHHH-HHHhcCccCCCCC-CChHHHHHHHHHHhhcCC------CCCCcEEE--eCChHHHHHHHHHHHHhc
Q 031493            6 QIELARDMGY-TAARFGHVMFPEN-VYEPALECAELLLQGVGK------GWASRAYF--SDNGSTAIEIALKMAFRK   72 (158)
Q Consensus         6 hP~Iv~Av~e-Ql~~l~~~~~~~~-~~~~~~~LAe~L~~~~P~------~~l~~v~f--~~SGSEA~E~AlKlAR~~   72 (158)
                      .|.|.+|+.+ +++.- ..  ..+ ......+|.+.|++....      . .+.+++  +++|++|+++++++++.+
T Consensus        49 ~~~v~~a~~~~~~~~~-~~--~~y~~~~g~~~lr~~ia~~~~~~~~~~~~-~~~i~~~~t~g~~~a~~~~~~~~~~~  121 (412)
T 1yaa_A           49 LPSVKAAEKLIHNDSS-YN--HEYLGITGLPSLTSNAAKIIFGTQSDALQ-EDRVISVQSLSGTGALHISAKFFSKF  121 (412)
T ss_dssp             CHHHHHHHHHHHTCTT-CC--CCCCCTTCCHHHHHHHHHHHHCTTCHHHH-TTCEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhhhcCcc-cc--cCCCCCCCcHHHHHHHHHHHhcCCCCCCC-cceEEEEeccchHhHHHHHHHHHHHh
Confidence            4789999888 76421 11  122 111123344444443311      1 357999  999999999999887754

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=92.81  E-value=0.27  Score=42.75  Aligned_cols=67  Identities=9%  Similarity=-0.022  Sum_probs=43.5

Q ss_pred             CCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhh----cCCCCCCcEEEeCChHHHHHHHHHH
Q 031493            2 FRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQG----VGKGWASRAYFSDNGSTAIEIALKM   68 (158)
Q Consensus         2 ~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~----~P~~~l~~v~f~~SGSEA~E~AlKl   68 (158)
                      .++.+|++++++.+++....+........+...++++.+.+.    .+....+.++++++|+||+..+++.
T Consensus       113 ~~~~~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~  183 (533)
T 3f6t_A          113 LGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHS  183 (533)
T ss_dssp             TCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHH
T ss_pred             CCcCCcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHH
Confidence            356789999999998876433321122234455677777544    1111025799999999999999985

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=92.72  E-value=0.021  Score=45.18  Aligned_cols=61  Identities=18%  Similarity=0.088  Sum_probs=40.9

Q ss_pred             cHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCC-CCCcEEEeCChHHHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~-~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      +|+|.+|+.++++.  +  ......+...++.+.|++..+.+ ..+.++++++|+||++.+++...
T Consensus        12 ~~~v~~a~~~~~~~--~--~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~   73 (353)
T 2yrr_A           12 PERVQKALLRPMRG--H--LDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD   73 (353)
T ss_dssp             CHHHHGGGGSCCCC--T--TCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS
T ss_pred             CHHHHHHHhccccc--c--cCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc
Confidence            68888888876542  1  10011233567888888877531 13579999999999999997553

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=92.65  E-value=0.18  Score=40.52  Aligned_cols=36  Identities=8%  Similarity=-0.068  Sum_probs=28.0

Q ss_pred             HHHHHHHHHhhcC-CCCCCcEEEeCChHHHHHHHHHHH
Q 031493           33 ALECAELLLQGVG-KGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus        33 ~~~LAe~L~~~~P-~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      ..+|.+.|++... -+ .+.+++++||++|++.+++..
T Consensus        65 ~~~l~~~la~~~~~~~-~~~v~~~~g~~~a~~~~~~~l  101 (375)
T 3op7_A           65 SPAFKKSVSQLYTGVK-PEQILQTNGATGANLLVLYSL  101 (375)
T ss_dssp             CHHHHHHHHTTSSSCC-GGGEEEESHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhccCC-hhhEEEcCChHHHHHHHHHHh
Confidence            4567788887652 23 468999999999999999865

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=92.47  E-value=0.15  Score=42.78  Aligned_cols=66  Identities=12%  Similarity=-0.004  Sum_probs=42.1

Q ss_pred             CCcHHHHHHHHHHHHhcCccCCCCCC--ChHHHHHHHHHHhhcCCCCCC-----cEEEeCChHHHHHHHHHHHHh
Q 031493            4 WFQIELARDMGYTAARFGHVMFPENV--YEPALECAELLLQGVGKGWAS-----RAYFSDNGSTAIEIALKMAFR   71 (158)
Q Consensus         4 h~hP~Iv~Av~eQl~~l~~~~~~~~~--~~~~~~LAe~L~~~~P~~~l~-----~v~f~~SGSEA~E~AlKlAR~   71 (158)
                      +.+|.+.+++.+.++.-. ..+..++  .+...++.+.|+++...+ .+     .+.++++||||+..|++.++.
T Consensus        53 ~~~~~v~e~~~~a~~~~~-~~~~~~~~~~~l~~~~~~~la~l~g~~-~~~~~~~~~~~t~ggtea~~~al~a~~~  125 (452)
T 2dgk_A           53 WDDENVHKLMDLSINKNW-IDKEEYPQSAAIDLRCVNMVADLWHAP-APKNGQAVGTNTIGSSEACMLGGMAMKW  125 (452)
T ss_dssp             CCCHHHHHHHHHTTTCBT-TCTTTCHHHHHHHHHHHHHHHHHTTCC-CCTTSCCEEEEESSHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHhccCC-CChhhChhHHHHHHHHHHHHHHHhCCC-cccccCCceEEeCCHHHHHHHHHHHHHH
Confidence            567889888887765321 1111111  111345666677776533 33     389999999999999998875

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=92.42  E-value=0.14  Score=40.53  Aligned_cols=64  Identities=9%  Similarity=-0.090  Sum_probs=39.7

Q ss_pred             cHHHHHHHHHHHHhcCccCCCCCC--ChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHVMFPENV--YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~~~~--~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      +|++.+++.+.+.+-.........  .+...++.++|.+......-+.+.+++||++|++++++..
T Consensus        16 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l   81 (362)
T 3ffr_A           16 YPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNC   81 (362)
T ss_dssp             CTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhc
Confidence            578888888877652210100111  1234556677777663211356999999999999999854

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=92.03  E-value=0.13  Score=43.31  Aligned_cols=68  Identities=10%  Similarity=-0.179  Sum_probs=38.8

Q ss_pred             CCcHHHHHHHHHHHHhcC----ccCCCCCCC-hHHHHHHHHHHhhcCCCC-----CCcEEE--eCChHHHHHHHHHHHHh
Q 031493            4 WFQIELARDMGYTAARFG----HVMFPENVY-EPALECAELLLQGVGKGW-----ASRAYF--SDNGSTAIEIALKMAFR   71 (158)
Q Consensus         4 h~hP~Iv~Av~eQl~~l~----~~~~~~~~~-~~~~~LAe~L~~~~P~~~-----l~~v~f--~~SGSEA~E~AlKlAR~   71 (158)
                      ..+|.+.+++++++.++.    ... ..|.. ....++.+.+++...+..     -+++++  +++|++|++.++++...
T Consensus        63 ~~~~~v~~av~~a~~~~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~  141 (448)
T 3meb_A           63 SGKPWILPAVKEAEAIISSDLSKYN-KEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHL  141 (448)
T ss_dssp             TSCCCCCHHHHHHHHHHHHCTTTTC-CSCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHH
T ss_pred             CCCEechHHHHHHHHHHhhcccCCC-CCCCCCcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHH
Confidence            345667777777744432    211 12322 223345555555441110     158999  99999999998877664


Q ss_pred             c
Q 031493           72 K   72 (158)
Q Consensus        72 ~   72 (158)
                      .
T Consensus       142 ~  142 (448)
T 3meb_A          142 W  142 (448)
T ss_dssp             H
T ss_pred             h
Confidence            3

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=91.92  E-value=0.44  Score=39.58  Aligned_cols=38  Identities=13%  Similarity=0.082  Sum_probs=32.0

Q ss_pred             ChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493           30 YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus        30 ~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .+...+|.++|++..+   .+.+++++||+||+++|++.+.
T Consensus        74 ~~~~~~l~~~la~~~~---~~~~~~~~~gt~a~~~al~~l~  111 (456)
T 2ez2_A           74 SENFYHLERTVQELFG---FKHIVPTHQGRGAENLLSQLAI  111 (456)
T ss_dssp             CHHHHHHHHHHHHHHC---CSEEEEESSHHHHHHHHHHHHC
T ss_pred             ChhHHHHHHHHHHHhC---CCcEEEeCCcHHHHHHHHHHhC
Confidence            5567789999999885   4689999999999999998773

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=91.90  E-value=0.21  Score=40.41  Aligned_cols=64  Identities=14%  Similarity=0.028  Sum_probs=39.4

Q ss_pred             CCcHHHHHHHHHHHH-hcCccCC-CC-C-CChHHHHHH----HHHHhhcCCCCCCcE-EEeCChHHHHHHHHHHHH
Q 031493            4 WFQIELARDMGYTAA-RFGHVMF-PE-N-VYEPALECA----ELLLQGVGKGWASRA-YFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         4 h~hP~Iv~Av~eQl~-~l~~~~~-~~-~-~~~~~~~LA----e~L~~~~P~~~l~~v-~f~~SGSEA~E~AlKlAR   70 (158)
                      +-+|+|.+|+.++++ ...+... .. + ..+...++.    ++|++..+   .+.. ++.+||+||++.|++.+.
T Consensus        34 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g---~~~~~i~~~sGt~a~~~a~~~~~  106 (405)
T 2vi8_A           34 FVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFG---AEHANVQPHSGAQANMAVYFTVL  106 (405)
T ss_dssp             CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT---CSEEECCCSSHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhC---CCceEEEecCcHHHHHHHHHHhc
Confidence            348999999999885 3221100 01 1 123333443    57777764   3343 456889999999999873

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=91.75  E-value=0.18  Score=40.80  Aligned_cols=42  Identities=14%  Similarity=0.059  Sum_probs=31.1

Q ss_pred             CCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493           28 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus        28 ~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      |+.+...+|.+.|++..+-+ .+.++++++|+||++.+++...
T Consensus        55 Y~~~~~~~lr~~la~~~~~~-~~~v~~~~G~~~ai~~~~~~~~   96 (356)
T 1fg7_A           55 YPECQPKAVIENYAQYAGVK-PEQVLVSRGADEGIELLIRAFC   96 (356)
T ss_dssp             CCCSSCHHHHHHHHHHHTSC-GGGEEEESHHHHHHHHHHHHHC
T ss_pred             CCCccHHHHHHHHHHHhCCC-hHHEEEcCCHHHHHHHHHHHHh
Confidence            33333556777888776533 4689999999999999998764

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=91.47  E-value=0.58  Score=38.61  Aligned_cols=58  Identities=10%  Similarity=-0.018  Sum_probs=42.4

Q ss_pred             cHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHH-HhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHVMFPENVYEPALECAELL-LQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L-~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      .|++.+|+.+.++...+.    ...+...+|-++| ++... . ...+.+++||++|+..|++..
T Consensus        15 ~~~i~~a~~~~~~~~~~~----~~~~~~~~l~~~~~a~~~g-~-~~~~v~~~sgt~al~~al~~l   73 (377)
T 3ju7_A           15 VIEYLDELKEIDASHIYT----NYGPINQRFEQTIMSGFFQ-N-RGAVTTVANATLGLMAAIQLK   73 (377)
T ss_dssp             GGGGHHHHHHHHHHTCCS----SSCHHHHHHHHHHHHHTST-T-CSEEEEESCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCcc----cCCHHHHHHHHHHHHHHhC-C-CCeEEEeCCHHHHHHHHHHHc
Confidence            367889998888763221    1245677888888 88775 2 346889999999999999865

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=90.90  E-value=0.29  Score=40.59  Aligned_cols=38  Identities=11%  Similarity=-0.017  Sum_probs=31.1

Q ss_pred             CCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHH
Q 031493           27 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK   67 (158)
Q Consensus        27 ~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlK   67 (158)
                      .+.++...++.++|++..+   .+.+++.+||+||++.|++
T Consensus        51 ~~~~~~~~~lr~~la~~~g---~~~~i~~~sGt~a~~~al~   88 (393)
T 1n8p_A           51 RSQNPNRENLERAVAALEN---AQYGLAFSSGSATTATILQ   88 (393)
T ss_dssp             TTCCHHHHHHHHHHHHHTT---CSEEEEESCHHHHHHHHHH
T ss_pred             cCCChhHHHHHHHHHHHhC---CCcEEEECChHHHHHHHHH
Confidence            4566777889999999875   3467788899999999998

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=90.73  E-value=0.78  Score=38.81  Aligned_cols=63  Identities=13%  Similarity=-0.055  Sum_probs=40.5

Q ss_pred             CCcHHHHHHHHHHHHh---cCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEE---eCChHHHHHHHHHHH
Q 031493            4 WFQIELARDMGYTAAR---FGHVMFPENVYEPALECAELLLQGVGKGWASRAYF---SDNGSTAIEIALKMA   69 (158)
Q Consensus         4 h~hP~Iv~Av~eQl~~---l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f---~~SGSEA~E~AlKlA   69 (158)
                      +|+++|.+|+.+....   ........+......+|.++++++..   .+...+   ++||++|+..+++..
T Consensus        29 ~n~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~g---~e~alv~p~~~sGt~Ai~~al~al   97 (409)
T 3jzl_A           29 FNQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFK---TEAALVRPQIISGTHAISTVLFGI   97 (409)
T ss_dssp             HHHHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHHT---CSEEEEETTSCSHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHhC---CCcEEEECCCccHHHHHHHHHHHh
Confidence            4677888888775311   11111123445556778888888875   334444   789999999998754

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=90.54  E-value=0.067  Score=42.96  Aligned_cols=38  Identities=5%  Similarity=-0.094  Sum_probs=26.9

Q ss_pred             HHHHHHHHHhhcCCC---CCCcEEEeCChHHHHHHHHHHHH
Q 031493           33 ALECAELLLQGVGKG---WASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus        33 ~~~LAe~L~~~~P~~---~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      ..++.+++.+.+...   ..+.++|++||+||++.+++...
T Consensus        40 ~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~   80 (385)
T 2bkw_A           40 FQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFI   80 (385)
T ss_dssp             HHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHh
Confidence            344556666665321   02579999999999999999774

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=90.50  E-value=0.9  Score=36.83  Aligned_cols=63  Identities=13%  Similarity=0.022  Sum_probs=38.6

Q ss_pred             cHHHHHHHHHHHHhcCccCCCC-C-CChHHHHHHHHHHhhcCCC-CCCcEEEeCChHHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHVMFPE-N-VYEPALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~~-~-~~~~~~~LAe~L~~~~P~~-~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      +|.+.+++.++++... ..+.. . ..+...++++.+.+..+-. ..+.+.++++|+||++.+++..
T Consensus        46 ~~~v~~a~~~~~~~~~-~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l  111 (385)
T 1b5p_A           46 PEHVKEAARRALAQGK-TKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAI  111 (385)
T ss_dssp             CHHHHHHHHHHHHTTC-CSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHh
Confidence            5789999988876421 11111 1 1233445666665432211 1357999999999999999865

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=90.34  E-value=0.41  Score=40.69  Aligned_cols=40  Identities=18%  Similarity=0.089  Sum_probs=31.8

Q ss_pred             CCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493           27 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus        27 ~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      .+.++...+|.++|+++.+   .+.+++++||++|+++|++..
T Consensus        78 r~~~p~~~~le~~lA~l~g---~~~~v~~~sG~~Ai~~al~al  117 (430)
T 3ri6_A           78 RSSNPTVEDLEQRLKNLTG---ALGVLALGSGMAAISTAILTL  117 (430)
T ss_dssp             --CCHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHC---CCcEEEECCHHHHHHHHHHHH
Confidence            4567888899999999875   345778889999999999865

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=90.17  E-value=0.44  Score=39.37  Aligned_cols=36  Identities=3%  Similarity=-0.067  Sum_probs=25.0

Q ss_pred             HHHHHHHHhhc--CCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493           34 LECAELLLQGV--GKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus        34 ~~LAe~L~~~~--P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      .++|+.+.+..  +-+ .+.|+|+++|+||++.+++...
T Consensus        90 ~~ia~~l~~~~g~~~~-~~~i~~t~G~t~al~~~~~~l~  127 (444)
T 3if2_A           90 DALVGFFNRHYDWNLT-SENIALTNGSQNAFFYLFNLFG  127 (444)
T ss_dssp             HHHHHHHHHHHCCCCC-GGGEEEESSHHHHHHHHHHHSS
T ss_pred             HHHHHHHHhhcCCCCC-HHHEEEecCcHHHHHHHHHHHh
Confidence            34555554322  222 4689999999999999998764

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=89.13  E-value=1  Score=35.50  Aligned_cols=57  Identities=16%  Similarity=0.201  Sum_probs=38.4

Q ss_pred             cHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      .|++.+++.+...  ....  ....+...+|.++|++..+   .+.+++++||+||++++++..
T Consensus        17 ~~~~~~a~~~~~~--~~~~--y~~~~~~~~l~~~la~~~g---~~~~~~~~~gt~a~~~~~~~~   73 (347)
T 1jg8_A           17 TEEMRKAMAQAEV--GDDV--YGEDPTINELERLAAETFG---KEAALFVPSGTMGNQVSIMAH   73 (347)
T ss_dssp             CHHHHHHHHTCCC--CCGG--GTCCHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHHHH
T ss_pred             CHHHHHHHhcCCC--CCcc--cCCChHHHHHHHHHHHHhC---CceEEEecCcHHHHHHHHHHh
Confidence            4677777654321  1111  1235556788899998874   467889999999999998764

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=89.11  E-value=0.63  Score=38.08  Aligned_cols=36  Identities=11%  Similarity=0.111  Sum_probs=24.3

Q ss_pred             HHHHHHHHHhhc-CCCCCCcEEEeCChHHHHHHHHHHH
Q 031493           33 ALECAELLLQGV-GKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus        33 ~~~LAe~L~~~~-P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      ...+++.+.... |.. .+.++++++|+||++.+++..
T Consensus        86 r~~ia~~~~~~~~~~~-~~~i~~t~g~~~al~~~~~~l  122 (418)
T 3rq1_A           86 LCAAEKECFGNFRPEG-HIRSIATAGGTGGIHHLIHNY  122 (418)
T ss_dssp             HHHHHHHHHGGGCCSS-EEEEEEESHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCccc-cccEEECCchHHHHHHHHHHh
Confidence            445555555443 211 228999999999999999854

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=88.70  E-value=0.63  Score=39.90  Aligned_cols=38  Identities=24%  Similarity=0.180  Sum_probs=30.1

Q ss_pred             HHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhc
Q 031493           34 LECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRK   72 (158)
Q Consensus        34 ~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~   72 (158)
                      .++.+.|+++++.+ .+.+.|+++|||||..|++.+|.+
T Consensus       151 ~~~~~~la~l~g~~-~~~~~~t~ggtea~~~al~~ar~~  188 (515)
T 2jis_A          151 EEVLRKLRALVGWS-SGDGIFCPGGSISNMYAVNLARYQ  188 (515)
T ss_dssp             HHHHHHHHHHHTCS-SCEEEEESSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCC-CCCeEEcCCcHHHHHHHHHHHHHH
Confidence            44666788877543 457999999999999999999853

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=87.10  E-value=0.67  Score=38.67  Aligned_cols=63  Identities=8%  Similarity=-0.011  Sum_probs=35.8

Q ss_pred             cHHHHHHHHHHHHhcCccCCC----CCCC----hHHHHHHHHHHhhcCCCCCCcEEE-eCChHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHVMFP----ENVY----EPALECAELLLQGVGKGWASRAYF-SDNGSTAIEIALKM   68 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~----~~~~----~~~~~LAe~L~~~~P~~~l~~v~f-~~SGSEA~E~AlKl   68 (158)
                      +|+|.+|+.+.+....-....    ....    +...+.-++|++++.-+.-..|+| +.+||||+++|++=
T Consensus        17 ~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~   88 (361)
T 3m5u_A           17 PLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMN   88 (361)
T ss_dssp             CHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHh
Confidence            688999988875421111000    1111    223344456666654220236777 88999999999873

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=86.44  E-value=1  Score=38.46  Aligned_cols=40  Identities=15%  Similarity=0.061  Sum_probs=31.7

Q ss_pred             CCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493           27 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus        27 ~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      .+.++...++.++|+++.+   .+..++.+||+||++.+++..
T Consensus       110 r~~~~~~~~l~~~lA~l~g---~~~~v~~~sG~~Ai~~al~~l  149 (445)
T 1qgn_A          110 RYGNPTTVVLEEKISALEG---AESTLLMASGMCASTVMLLAL  149 (445)
T ss_dssp             GGCCHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHhC---CCcEEEeCCHHHHHHHHHHHH
Confidence            3467778889999999875   346777789999999999843

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=85.81  E-value=0.45  Score=38.84  Aligned_cols=63  Identities=10%  Similarity=-0.092  Sum_probs=37.5

Q ss_pred             cHHHHHHHHHHHHhcCccCCCCCC--ChHHHHHHHHHHhhcCCCCCCcEEE-eCChHHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHVMFPENV--YEPALECAELLLQGVGKGWASRAYF-SDNGSTAIEIALKMA   69 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~~~~--~~~~~~LAe~L~~~~P~~~l~~v~f-~~SGSEA~E~AlKlA   69 (158)
                      +|+|.+|+.++........ ..++  .+...++.++|++...-+.-+.+.| +++|+||++++++..
T Consensus        52 ~~~v~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l  117 (398)
T 2fyf_A           52 RLEQLQTLTTTAAALFGTS-HRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGL  117 (398)
T ss_dssp             CHHHHHGGGTTTTTTTTSC-TTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHT
T ss_pred             CHHHHHHHhhcCCCccCcC-cCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHh
Confidence            5678888766311111100 0111  1234567788888764320247888 999999999999865

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=84.87  E-value=1.6  Score=35.64  Aligned_cols=35  Identities=17%  Similarity=0.087  Sum_probs=23.7

Q ss_pred             HHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493           35 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus        35 ~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      ++++.+.+......-+.+++++||+||++.+++..
T Consensus        62 ~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~   96 (374)
T 2aeu_A           62 KVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL   96 (374)
T ss_dssp             HHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC
Confidence            45555545543210157899999999999999855

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=84.52  E-value=0.48  Score=37.89  Aligned_cols=63  Identities=13%  Similarity=0.106  Sum_probs=38.0

Q ss_pred             cHHHHHHHHHHHHhcCccC-----CCCCC---ChHHHHHHHHHHhhcCCCCCC-c-EEEeCChHHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHVM-----FPENV---YEPALECAELLLQGVGKGWAS-R-AYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~-----~~~~~---~~~~~~LAe~L~~~~P~~~l~-~-v~f~~SGSEA~E~AlKlA   69 (158)
                      +|+|.+|+.+.+++.....     .....   .+...++.++|.+...-+ .+ . ++++++|+||+..+++..
T Consensus        16 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~~i~~t~g~t~a~~~~~~~l   88 (362)
T 2c0r_A           16 PLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNP-TGYKVLFIQGGASTQFAMIPMNF   88 (362)
T ss_dssp             CHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCC-SSEEEEEESSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCC-CCcEEEEECCCchHHHHHHHHhc
Confidence            6889999988764321000     00111   122456777777776433 22 5 467789999999998754

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=84.28  E-value=1.3  Score=34.93  Aligned_cols=32  Identities=13%  Similarity=-0.025  Sum_probs=24.6

Q ss_pred             HHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493           35 ECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus        35 ~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      +|.++|++..+   .+.+++.+||+||++.+++..
T Consensus         2 ~l~~~la~~~g---~~~~i~~~sG~~a~~~~~~~~   33 (331)
T 1pff_A            2 ALEGKIAKLEH---AEACAATASGMGAIAASVWTF   33 (331)
T ss_dssp             HHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhC---CCeEEEeCChHHHHHHHHHHh
Confidence            45677777765   346777889999999999865

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=82.72  E-value=0.7  Score=38.91  Aligned_cols=64  Identities=8%  Similarity=-0.049  Sum_probs=31.6

Q ss_pred             cHHHHHHHHHHHHhcCcc--------CCCCCCChHHHHHHHHHHhhcCCCCCCcEEE-eCChHHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHV--------MFPENVYEPALECAELLLQGVGKGWASRAYF-SDNGSTAIEIALKMA   69 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~--------~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f-~~SGSEA~E~AlKlA   69 (158)
                      .|+|.+|+.+.+....-.        +...-..+...+.-++|++++.-+.-..|+| +.+||||+++|++=.
T Consensus        39 p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l  111 (386)
T 3qm2_A           39 PAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNL  111 (386)
T ss_dssp             CHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhc
Confidence            578888887765431110        0000011222334455555543220135777 689999999998743

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=82.40  E-value=4  Score=34.69  Aligned_cols=63  Identities=13%  Similarity=-0.097  Sum_probs=37.2

Q ss_pred             CcHHHHHHHHHHHH--h-cCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEE--eCChHHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAA--R-FGHVMFPENVYEPALECAELLLQGVGKGWASRAYF--SDNGSTAIEIALKMA   69 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~--~-l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f--~~SGSEA~E~AlKlA   69 (158)
                      |.++|.+|+.+...  . +.......+......+|.++++++....  ..+.|  .+||++|+..++...
T Consensus        44 n~~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~g~e--~alv~p~~~sGt~Ai~~al~al  111 (427)
T 3i16_A           44 NQLKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVFNTE--SALVRPHFVNGTHALGAALFGN  111 (427)
T ss_dssp             HHHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHHTCS--EEEEETTCCSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHhCCc--ceEEeCCCccHHHHHHHHHHHH
Confidence            45667777765321  1 1111111344555677888888887532  22343  789999999988743

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=81.76  E-value=2.3  Score=36.09  Aligned_cols=38  Identities=18%  Similarity=0.087  Sum_probs=27.8

Q ss_pred             HHHHHHHhhcCCCC-CCcEEEeCChHHHHHHHHHHHHhc
Q 031493           35 ECAELLLQGVGKGW-ASRAYFSDNGSTAIEIALKMAFRK   72 (158)
Q Consensus        35 ~LAe~L~~~~P~~~-l~~v~f~~SGSEA~E~AlKlAR~~   72 (158)
                      ++.+.|+++.+-+. ...+.|+++|||||..|++.+|..
T Consensus       136 ~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~  174 (504)
T 2okj_A          136 ITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYK  174 (504)
T ss_dssp             HHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHH
Confidence            34466677664220 247899999999999999999853

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=81.05  E-value=3.9  Score=34.32  Aligned_cols=39  Identities=8%  Similarity=0.038  Sum_probs=30.9

Q ss_pred             CCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHH
Q 031493           26 PENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK   67 (158)
Q Consensus        26 ~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlK   67 (158)
                      ..+.++...++.++|+++.+   .+.+++.+||+||+.++++
T Consensus        77 ~r~~~p~~~~le~~lA~l~g---~~~~i~~ssGt~Ai~~al~  115 (415)
T 2fq6_A           77 GRRGTLTHFSLQQAMCELEG---GAGCVLFPCGAAAVANSIL  115 (415)
T ss_dssp             TTTCCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHH
T ss_pred             cCCCCchHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHH
Confidence            35567888889999999875   3456666899999999987

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=80.93  E-value=1.6  Score=36.21  Aligned_cols=38  Identities=11%  Similarity=-0.108  Sum_probs=28.3

Q ss_pred             CCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHH
Q 031493           27 ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK   67 (158)
Q Consensus        27 ~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlK   67 (158)
                      .+.++...+|.++|++..+   .+..++.+||+||++++++
T Consensus        63 r~~~p~~~~l~~~la~~~g---~~~~i~~~sG~~ai~~~~~  100 (403)
T 3cog_A           63 RSGNPTRNCLEKAVAALDG---AKYCLAFASGLAATVTITH  100 (403)
T ss_dssp             ---CHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHT
T ss_pred             CCCCchHHHHHHHHHHHhC---CCcEEEECCHHHHHHHHHH
Confidence            4567778889999999875   2356667789999999987

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=80.29  E-value=1.6  Score=37.30  Aligned_cols=37  Identities=19%  Similarity=0.110  Sum_probs=29.4

Q ss_pred             CCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHH
Q 031493           28 NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALK   67 (158)
Q Consensus        28 ~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlK   67 (158)
                      ..++...+++++|.+..+   .+.+++++||++|++++++
T Consensus       130 ~g~~~~~~l~~~la~~~g---~~~~i~~~sGt~al~~~l~  166 (464)
T 1ibj_A          130 SGNPTRDALESLLAKLDK---ADRAFCFTSGMAALSAVTH  166 (464)
T ss_dssp             TCCHHHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHH
Confidence            356667788999998874   4578888999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	158
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.88
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.86
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.85
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.85
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.83
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.82
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.76
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.61
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	98.15
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	98.0
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	97.57
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	97.56
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	97.49
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	96.77
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	96.07
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	93.13
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	91.93
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	91.54
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	91.33
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	90.0
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	89.03
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	87.57
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	87.47
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	86.91
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	86.64
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	85.88
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	85.48
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	84.45
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	84.08
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	82.87
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	80.08

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.88  E-value=4.3e-23  Score=175.99  Aligned_cols=96  Identities=20%  Similarity=0.237  Sum_probs=85.5

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      ++||+||+|++|+++|++++.++. ..+.+++.++||++|++.+|++ +++|+|++|||||||+|||+||+++    |+ 
T Consensus        54 ~lGh~~p~v~~ai~~q~~~~~~~~-~~~~~~~~~~la~~L~~~~~~~-~~~v~f~~sGseA~e~Alk~Ar~~t----~r-  126 (431)
T d1zoda1          54 VLGHCHPEIVSVIGEYAGKLDHLF-SEMLSRPVVDLATRLANITPPG-LDRALLLSTGAESNEAAIRMAKLVT----GK-  126 (431)
T ss_dssp             TTCBTCHHHHHHHHHHHHHCCCCC-TTCCCHHHHHHHHHHHHHSCTT-CCEEEEESCHHHHHHHHHHHHHHHH----TC-
T ss_pred             hhcCCCHHHHHHHHHHHhhccccc-cccccHHHHHHHHHHHHhCCcc-cceeeecccccchHHHHHHHHHHhc----CC-
Confidence            489999999999999999998865 4678999999999999999877 8999999999999999999999873    43 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                                    .+|++          |+++|||.|.+++|..+.
T Consensus       127 --------------~~i~~----------~~~~yHG~t~~~~~~~~~  149 (431)
T d1zoda1         127 --------------YEIVG----------FAQSWHGMTGAAASATYS  149 (431)
T ss_dssp             --------------CEEEE----------ETTCCCCSSHHHHHTCCS
T ss_pred             --------------cceee----------cccccccccchhhccccc
Confidence                          27999          999999999998776553

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=2.4e-22  Score=171.28  Aligned_cols=99  Identities=21%  Similarity=0.232  Sum_probs=86.1

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.....+.+++..+|||+|++.+|+...++|+|++|||||||+|+|+||+++    ++ 
T Consensus        53 ~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~~t----~r-  127 (425)
T d1sffa_          53 NTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAAT----KR-  127 (425)
T ss_dssp             TTCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH----TC-
T ss_pred             cccCCcHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhhhh----cc-
Confidence            4899999999999999999888765567799999999999999986535799999999999999999999874    33 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCCc
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGTL  128 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~~  128 (158)
                                    .+||+          ++++|||+|.++++.++..
T Consensus       128 --------------~~ii~----------~~~~yHG~t~~~~~~t~~~  151 (425)
T d1sffa_         128 --------------SGTIA----------FSGAYHGRTHYTLALTGKV  151 (425)
T ss_dssp             --------------CEEEE----------ETTCCCCSSHHHHHHSSCC
T ss_pred             --------------cceEe----------ecCCCcCccccchhhcCCC
Confidence                          27999          9999999999988766543

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=9.4e-22  Score=168.51  Aligned_cols=102  Identities=24%  Similarity=0.291  Sum_probs=88.5

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.....+.+++..+++++|++.+|.+ +++|+|++|||||||+|+|+||+++.. +|. 
T Consensus        56 ~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~v~f~~sGseA~e~A~k~ar~~~~~-~g~-  132 (429)
T d1s0aa_          56 IHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQP-LECVFLADSGSVAVEVAMKMALQYWQA-KGE-  132 (429)
T ss_dssp             TTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTT-CCEEEEESSHHHHHHHHHHHHHHHHHH-HTC-
T ss_pred             hhcCCcHHHHHHHHHHHHhcCCcccCCccchHHHHHHHHHHhhhccC-cceeeeccccccchhhhhhhhhheeec-ccc-
Confidence            48999999999999999999887655678999999999999999987 899999999999999999999987543 332 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                         .+         .+||+          ++++|||+|.++++..+.
T Consensus       133 ---~~---------~~ii~----------~~~~yHG~t~~a~~~t~~  157 (429)
T d1s0aa_         133 ---AR---------QRFLT----------FRNGYHGDTFGAMSVCDP  157 (429)
T ss_dssp             ---CC---------CEEEE----------ETTCCCCSSHHHHTTSCT
T ss_pred             ---cc---------cEEEE----------ecCCccccchhhhhhcCC
Confidence               22         37999          999999999998887664

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=1.1e-21  Score=165.92  Aligned_cols=96  Identities=17%  Similarity=-0.032  Sum_probs=84.5

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .|||+||+|++|+++|++++.+.. ..+.++...+|+++|.+..|.+ +++|+|++|||||||+|||+||+++    ++ 
T Consensus        50 ~lGh~hp~v~~a~~~~~~~~~~~~-~~~~~~~~~~la~~l~~~~~~~-~~~v~f~~sGseA~e~Aik~Ar~~t----~r-  122 (387)
T d1vefa1          50 NLGHGNPEVVEAVKRQAETLMAMP-QTLPTPMRGEFYRTLTAILPPE-LNRVFPVNSGTEANEAALKFARAHT----GR-  122 (387)
T ss_dssp             TTCBTCHHHHHHHHHHHHHCCCCC-TTSCCHHHHHHHHHHHHTSCTT-EEEEEEESSHHHHHHHHHHHHHHHH----SC-
T ss_pred             hhcCCcHHHHHHHHHHHHhhcccc-cccCCchHHHHHHHhhhhcccc-ceeeccccCchHHHHHHHHHHHhhc----cc-
Confidence            489999999999999999987764 3578899999999999998877 8899999999999999999999873    33 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                                    .+||+          +.++|||+|.++++.++.
T Consensus       123 --------------~~ii~----------~~~~yHG~t~~~~~~s~~  145 (387)
T d1vefa1         123 --------------KKFVA----------AMRGFSGRTMGSLSVTWE  145 (387)
T ss_dssp             --------------CEEEE----------ETTCCCCSSHHHHHTCCC
T ss_pred             --------------ceecc----------cccCCCCCccceEeccCC
Confidence                          27999          999999999998877664

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.83  E-value=1.6e-21  Score=168.33  Aligned_cols=115  Identities=17%  Similarity=0.079  Sum_probs=83.9

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCC----CChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhccccc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPEN----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFD   76 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~----~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~   76 (158)
                      .+||+||+|++|+++|+++..+.+...+    +.+.+.+|+|+|.+..|.+ +++|+|++|||||||+|||+||+|+...
T Consensus        66 ~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~~a~~lae~l~~~~~~~-~~~v~f~~sGseAve~Aik~Ar~~~~~~  144 (461)
T d1ohwa_          66 PIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKG-MSQLITMACGSCSNENAFKTIFMWYRSK  144 (461)
T ss_dssp             SSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTT-CCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCcHHHHHHHHHHHhhhhhcccccccccchHHHHHHHHHHHHhhhccC-cceeeeecchhhhhHHHHHHHHHHhhhc
Confidence            4899999999999999988765432222    2334677888888888877 8999999999999999999999875321


Q ss_pred             CCcccccc-C-------CCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           77 HDVLVDFL-G-------KDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        77 ~g~~~~~~-~-------~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                       ++.-... +       ....+++...+||+          ++++|||+|+++++.++.
T Consensus       145 -~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~----------~~~syHG~t~~a~s~tg~  192 (461)
T d1ohwa_         145 -ERGQSAFSKEELETCMINQAPGCPDYSILS----------FMGAFHGRTMGCLATTHS  192 (461)
T ss_dssp             -HHTTCCCCHHHHHHHHTTCTTTSCCCEEEE----------ETTCCCCSSHHHHHTCCS
T ss_pred             -ccCcccccchhhhhhhhccccCCCCceEEE----------ecCCcCCCCcccccccCC
Confidence             1100000 0       00234445568999          999999999998887664

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.82  E-value=7.1e-21  Score=162.45  Aligned_cols=93  Identities=14%  Similarity=0.070  Sum_probs=79.3

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.   ........++++++.+..| . .++|+|++|||||||+|+|+||+++    |+ 
T Consensus        65 ~lGh~hp~i~~ai~~~~~~~~~~---~~~~~~~~~la~~~~~~~~-~-~~~v~f~~sGseA~e~Alk~ar~~t----~r-  134 (427)
T d2gsaa_          65 ICGHAHPEVIEALKVAMEKGTSF---GAPCALENVLAEMVNDAVP-S-IEMVRFVNSGTEACMAVLRLMRAYT----GR-  134 (427)
T ss_dssp             TTCBTCHHHHHHHHHHHTTCSCC---SSCCHHHHHHHHHHHHHST-T-CSEEEEESSHHHHHHHHHHHHHHHH----CC-
T ss_pred             hccCCcHHHHHHHHHHHHhcCcc---ccchhHHHHHHHHHHhhCC-c-cccccccCCcHHHHHHHHHHHHHhc----CC-
Confidence            37999999999999999987653   3456777889999988876 4 6899999999999999999999873    43 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                                    .+||+          +.++|||+|.++++..+.
T Consensus       135 --------------~~ii~----------~~~~yHG~t~~~~~~~~~  157 (427)
T d2gsaa_         135 --------------DKIIK----------FEGCYHGHADMFLVKAGS  157 (427)
T ss_dssp             --------------CEEEE----------ETTCCCCSCGGGCSSCCH
T ss_pred             --------------CeEEE----------EecccccCcceeeeecCC
Confidence                          27999          999999999999888764

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4e-19  Score=150.82  Aligned_cols=102  Identities=11%  Similarity=-0.097  Sum_probs=81.2

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      ++||+||+|++|+++|++++.+.+. .+.++...++++++.++.+   .++|+|++|||||||+|+|+||+++.+.++. 
T Consensus        54 ~lGh~~p~i~~Av~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~-  128 (404)
T d2byla1          54 NQGHCHPKIVNALKSQVDKLTLTSR-AFYNNVLGEYEEYITKLFN---YHKVLPMNTGVEAGETACKLARKWGYTVKGI-  128 (404)
T ss_dssp             TTCBTCHHHHHHHHHHHTTCCCCCT-TEEESSHHHHHHHHHHHHT---CSEEEEESSHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred             hhcCCCHHHHHHHHHHHhhCCCccc-ccccchHHHHHHhhhhccc---ccccccccCccccchhHHHHHHHHhhhcccc-
Confidence            4899999999999999999887652 4556667778888887754   6899999999999999999999876543222 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                       ...+         .+|++          +.++|||+|.+++|..+.
T Consensus       129 -~~~~---------~~i~~----------~~~~~hg~t~~~~~~~~~  155 (404)
T d2byla1         129 -QKYK---------AKIVF----------AAGNFWGRTLSAISSSTD  155 (404)
T ss_dssp             -CTTC---------CEEEE----------ETTCCCCCSHHHHTTCCC
T ss_pred             -cccc---------ccccc----------cCCCccccccceeccCCC
Confidence             1012         37999          999999999998887654

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.61  E-value=5.9e-16  Score=130.62  Aligned_cols=102  Identities=17%  Similarity=-0.011  Sum_probs=64.1

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCcc
Q 031493            1 MFRWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVL   80 (158)
Q Consensus         1 ~~Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~   80 (158)
                      .+||+||+|++|+++|++++.+.+. .+.+++.. ++++++...| + .++++|++|||||+|+|+|+||+++...... 
T Consensus        52 ~lGh~~p~v~~Ai~~q~~~~~~~~~-~~~~~~~~-~~~~~~~~~~-~-~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~-  126 (404)
T d1z7da1          52 NQGHCHPNILNAMINQAKNLTICSR-AFFSVPLG-ICERYLTNLL-G-YDKVLMMNTGAEANETAYKLCRKWGYEVKKI-  126 (404)
T ss_dssp             TTCBTCHHHHHHHHHHHTTCSCCCT-TSEEHHHH-HHHHHHHHHH-T-CSEEEEESSHHHHHHHHHHHHHHHHHHTSCC-
T ss_pred             hhhcCcHHHHHHHHHHHHhCCCccc-ccchHHHH-HHHHhhhhcc-c-cceeeeeccccchHHHHHHHHHHHHhhcccc-
Confidence            4899999999999999999887642 34445544 4555444444 2 5799999999999999999999875432111 


Q ss_pred             ccccCCCcccccccceeEecccccccccCCCCCcCCcCcccccCCCC
Q 031493           81 VDFLGKDTTEKCVELKHLKDHIMVILWVPWKLKHHHLTQGFCSNHGT  127 (158)
Q Consensus        81 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~yHG~T~g~~s~~~~  127 (158)
                       ...+         .++++          ++++|||.|.+..+..+.
T Consensus       127 -~~~~---------~~~~~----------~~~~~hg~~~~~~~~~~~  153 (404)
T d1z7da1         127 -PENM---------AKIVV----------CKNNFSGRTLGCISASTT  153 (404)
T ss_dssp             -CTTC---------CEEEE----------ETTC--------------
T ss_pred             -cccc---------ccccc----------ccccCCCCcccccccccc
Confidence             1011         47999          999999999997776553

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=98.15  E-value=1.5e-06  Score=66.29  Aligned_cols=65  Identities=12%  Similarity=0.113  Sum_probs=48.8

Q ss_pred             CCCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhc
Q 031493            3 RWFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRK   72 (158)
Q Consensus         3 Gh~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~   72 (158)
                      +..||+|++|++++..  .+.. .....+...++.++|+++...  -..++|++||+|||+.|++.++..
T Consensus        13 ~g~~P~v~~A~~~a~~--~~~~-~~~~~~~~~~l~~~la~~~g~--~~~v~f~~sGt~An~~a~~~~~~~   77 (345)
T d1v72a1          13 AGASPEVAQALVKHSS--GQAG-PYGTDELTAQVKRKFCEIFER--DVEVFLVPTGTAANALCLSAMTPP   77 (345)
T ss_dssp             CCCCHHHHHHHHHTTS--SCCC-STTCSHHHHHHHHHHHHHHTS--CCEEEEESCHHHHHHHHHHTSCCT
T ss_pred             CCCCHHHHHHHHHHhc--cCcc-ccCCCHHHHHHHHHHHHHHCC--CcEEEECCchHHHHHHHHHHHHhc
Confidence            4579999999987642  2221 123456777899999998853  246899999999999999988764

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=98.00  E-value=6.5e-06  Score=61.53  Aligned_cols=63  Identities=14%  Similarity=0.114  Sum_probs=48.0

Q ss_pred             CcHHHHHHHHHHHHhcCccCCCCC-CChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhc
Q 031493            5 FQIELARDMGYTAARFGHVMFPEN-VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRK   72 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~~~~-~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~   72 (158)
                      .||+|++|+.++..  .+.  .++ ..+...++.+++.++.+.+ .+.|+|+++|||||..|++.+...
T Consensus        12 ~~P~v~eAl~~~~~--~~~--~~y~~~~~~~~lr~~ia~~~g~~-~~~v~~tsggtean~~a~~~~~~~   75 (340)
T d1svva_          12 MHPKILDLMARDNM--TQH--AGYGQDSHCAKAARLIGELLERP-DADVHFISGGTQTNLIACSLALRP   75 (340)
T ss_dssp             CCHHHHHHHHHHTT--CCC--CSTTCSHHHHHHHHHHHHHHTCT-TSEEEEESCHHHHHHHHHHHHCCT
T ss_pred             CCHHHHHHHHHHhh--cCC--CCCCCCHHHHHHHHHHHHHhCCC-cceEEEcCCHHHHHHHHHHHHhhh
Confidence            48999999988643  222  133 3555678889999988755 568999999999999999977643

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=0.00011  Score=60.51  Aligned_cols=64  Identities=13%  Similarity=-0.002  Sum_probs=50.5

Q ss_pred             CCCC-cHHHHHHHHHHHHhcCccCCCCC-----CChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            2 FRWF-QIELARDMGYTAARFGHVMFPEN-----VYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         2 ~Gh~-hP~Iv~Av~eQl~~l~~~~~~~~-----~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      +|+. ||+|++|+++++++..... ...     ..+...+|.++|++..+   .+.+++++||.+||+.+++..
T Consensus        56 LGl~~hp~v~~a~~~a~~~~g~~~-~~sr~~~g~~~~~~~lE~~lA~~~g---~e~al~~~SG~~An~~~i~~l  125 (401)
T d1fc4a_          56 LGLANHPDLIAAAKAGMDSHGFGM-ASVRFICGTQDSHKELEQKLAAFLG---MEDAILYSSCFDANGGLFETL  125 (401)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHCSCC-CSCHHHHCCBHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHTTHHHH
T ss_pred             ccccCCHHHHHHHHHHHHHhCCCc-ccceeeccCcHHHHHHHHHHHHhhc---CCceEEecchhhhhHHHHHHh
Confidence            4665 9999999999999865432 111     35667789999999885   678999999999999999743

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=97.56  E-value=3.8e-05  Score=63.50  Aligned_cols=41  Identities=7%  Similarity=-0.042  Sum_probs=36.0

Q ss_pred             ChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcc
Q 031493           30 YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKF   73 (158)
Q Consensus        30 ~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~   73 (158)
                      ++...+|.++++++++   .++++|++|||+||++|+|+++++.
T Consensus        74 ~~~~~~le~~~a~l~g---~~~~~~~~sGt~A~~~a~~~~~~~g  114 (465)
T d1ax4a_          74 SRNYYDLKDKAKELFN---YDYIIPAHQGRGAENILFPVLLKYK  114 (465)
T ss_dssp             CHHHHHHHHHHHHHHC---CCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHC---CCEEEECCCcHHHHHHHHHHHHHHH
Confidence            4556789999999986   7899999999999999999999864

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.49  E-value=4.7e-05  Score=57.97  Aligned_cols=60  Identities=15%  Similarity=0.202  Sum_probs=44.8

Q ss_pred             cHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhc
Q 031493            6 QIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRK   72 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~   72 (158)
                      +|++++|+.+..  .....  ....+...+|.++|+++.+   .+.++|++||++||++||+.++..
T Consensus        13 ~p~v~~A~~~a~--~g~~~--yg~~p~~~~le~~lA~~~G---~~~~~~~~sGt~A~~~al~a~~~~   72 (343)
T d1m6sa_          13 TEEMRKAMAQAE--VGDDV--YGEDPTINELERLAAETFG---KEAALFVPSGTMGNQVSIMAHTQR   72 (343)
T ss_dssp             CHHHHHHHHTCC--CCCGG--GTCCHHHHHHHHHHHHHTT---CSEEEEESCHHHHHHHHHHHHCCT
T ss_pred             CHHHHHHHHhhh--cCCcc--cCCCHHHHHHHHHHHHHHC---CCeEEEeCCHHHHHHHHHHHHhcc
Confidence            699999987542  11111  1235677889999999875   578999999999999999988753

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=96.77  E-value=0.00018  Score=59.53  Aligned_cols=71  Identities=17%  Similarity=0.119  Sum_probs=50.8

Q ss_pred             ChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHhcccccCCccccccCCCcccccccceeEecccccccccC
Q 031493           30 YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSFDHDVLVDFLGKDTTEKCVELKHLKDHIMVILWVP  109 (158)
Q Consensus        30 ~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~~~~~~~g~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~  109 (158)
                      ++...+|.++++++++   .+.++|++||++||+.|+++..+........    .+         ..++.          
T Consensus        73 ~~~~~~le~~~a~l~G---~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~----~~---------~~~i~----------  126 (467)
T d2v1pa1          73 SRSYYALAESVKNIFG---YQYTIPTHQGRGAEQIYIPVLIKKREQEKGL----DR---------SKMVA----------  126 (467)
T ss_dssp             CHHHHHHHHHHHHHTC---CSEEEEECSSTTTHHHHHHHHHHHHHHHHCC----CT---------TTCEE----------
T ss_pred             CchHHHHHHHHHHHHC---CCEEEECCCCHHHHHHHHHHHhhccceEecC----CC---------CcEEE----------
Confidence            4566789999999986   6789999999999999999999763221111    11         24555          


Q ss_pred             CCCCcCCcCcccccCCC
Q 031493          110 WKLKHHHLTQGFCSNHG  126 (158)
Q Consensus       110 ~~~~yHG~T~g~~s~~~  126 (158)
                      ..+.||+.|.+..+..|
T Consensus       127 ~~~~~~~~~~~~~~~~G  143 (467)
T d2v1pa1         127 FSNYFFDTTQGHSQING  143 (467)
T ss_dssp             EESSCCHHHHHHHHHTT
T ss_pred             EecccccccHHHHHHcC
Confidence            67888888766444333

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=96.07  E-value=0.011  Score=47.84  Aligned_cols=65  Identities=18%  Similarity=0.089  Sum_probs=50.0

Q ss_pred             CCC-CcHHHHHHHHHHHHhcCccCC-C---CCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            2 FRW-FQIELARDMGYTAARFGHVMF-P---ENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         2 ~Gh-~hP~Iv~Av~eQl~~l~~~~~-~---~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      +|. .||+|++|+.+++++...... .   .-..+...+|.++|++..+   .+.+.+++||..||..++..-
T Consensus        49 LGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g---~e~al~~~SG~~an~~~i~al  118 (383)
T d1bs0a_          49 LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLG---YSRALLFISGFAANQAVIAAM  118 (383)
T ss_dssp             TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHHHH
T ss_pred             cccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhcC---CCceEEecccchhhHHHHHhh
Confidence            354 499999999999998654211 1   1245777899999999885   578999999999999999743

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=93.13  E-value=0.17  Score=40.00  Aligned_cols=60  Identities=15%  Similarity=0.067  Sum_probs=43.8

Q ss_pred             CCcHHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            4 WFQIELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         4 h~hP~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      +-..+-.+++.+.++.-...   ...-+...++-+++++...   ...+.+++|||.|+++|++..
T Consensus        10 ~~~~~~~~~~~~~l~~g~~~---~~~g~~v~~fE~~~a~~~g---~~~~v~~~SGt~Al~lal~~l   69 (384)
T d1b9ha_          10 QYDDAERNGLVRALEQGQWW---RMGGDEVNSFEREFAAHHG---AAHALAVTNGTHALELALQVM   69 (384)
T ss_dssp             CCCHHHHHHHHHHHHTSCCB---TTTCSHHHHHHHHHHHHTT---CSEEEEESCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHcCCee---ecCCHHHHHHHHHHHHHHC---cCeEEEeCCHHHHHHHHHHHc
Confidence            34456677888888764321   1123567788899999875   568999999999999999743

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.93  E-value=0.25  Score=37.98  Aligned_cols=55  Identities=13%  Similarity=-0.045  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            7 IELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         7 P~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      ++-.+++.+.++.-.+.     .-+...+|.++|++...   .+.+.+++|||+|+.+|++..
T Consensus        12 ~~~~~~~~~~~~~~~~~-----~G~~v~~~E~~la~~~g---~~~ai~~~sgt~Al~~al~al   66 (376)
T d1mdoa_          12 AEELAAVKTVLDSGWIT-----TGPKNQELEAAFCRLTG---NQYAVAVSSATAGMHIALMAL   66 (376)
T ss_dssp             HHHHHHHHHHHHHTCCS-----SSHHHHHHHHHHHHHHC---CSEEEEESCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCCc-----CCHHHHHHHHHHHHHHC---cCeEEEeCCHHHHHHHHHHHh
Confidence            44456777777653222     13556778899999885   467899999999999999743

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=91.54  E-value=0.27  Score=38.18  Aligned_cols=53  Identities=11%  Similarity=-0.008  Sum_probs=39.4

Q ss_pred             HHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493           10 ARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus        10 v~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      .+++.|.+++-...+    .-+...+|-++|++.+.   ...+.+++|||.|+.+|++..
T Consensus         4 ~~~~~~~l~~~~~~~----~G~~~~~fE~~~~~~~~---~~~~~~~~SgT~Al~lal~~l   56 (374)
T d1o69a_           4 LKYIEEVFKSNYIAP----LGEFVNRFEQSVKDYSK---SENALALNSATAALHLALRVA   56 (374)
T ss_dssp             HHHHHHHHHHTTTSC----TTHHHHHHHHHHHHHHC---CSEEEEESCHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCcCC----CCHHHHHHHHHHHHHHC---cCeEEEeCCHHHHHHHHHHHc
Confidence            478888887642211    13556778888888875   568999999999999999854

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=91.33  E-value=0.14  Score=39.57  Aligned_cols=58  Identities=10%  Similarity=0.024  Sum_probs=39.0

Q ss_pred             cHHHHHHHHHHHHhcCccCCCCCCChH-HHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            6 QIELARDMGYTAARFGHVMFPENVYEP-ALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         6 hP~Iv~Av~eQl~~l~~~~~~~~~~~~-~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      +|.+++|+++.+++..     +|+.+. ..+|-+.|++...-. .+.++++++|+||+..+++..
T Consensus        40 p~~i~~al~~~l~~~~-----~Y~~~~G~~elr~aiA~~~~~~-~~~Iiit~G~~~al~~~~~~l   98 (368)
T d1v2da_          40 PPFLLEAVRRALGRQD-----QYAPPAGLPALREALAEEFAVE-PESVVVTSGATEALYVLLQSL   98 (368)
T ss_dssp             CHHHHHHHHHHTTTSC-----SCCCTTCCHHHHHHHHHHHTSC-GGGEEEESSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccc-----CCCCCcCCHHHHHHHHhhcccC-CcceeeccchHHHHHHHhhcc
Confidence            4789999998776532     232221 334555566655433 568999999999999998754

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=90.00  E-value=0.37  Score=37.46  Aligned_cols=55  Identities=13%  Similarity=-0.014  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHhcCccCCCCCCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493            8 ELARDMGYTAARFGHVMFPENVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus         8 ~Iv~Av~eQl~~l~~~~~~~~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      +-.+++.+.++.-.+    . .-+...+|-++|++.++   .+.+.+++|||.|+++|++...
T Consensus        13 ~~~~~v~~~l~~~~~----~-~G~~v~~fE~~~~~~~g---~k~ai~~~Sgt~Al~~al~al~   67 (371)
T d2fnua1          13 EDKKAVLEVLNSKQL----T-QGKRSLLFEEALCEFLG---VKHALVFNSATSALLTLYRNFS   67 (371)
T ss_dssp             HHHHHHHHHHTSSCC----S-SSHHHHHHHHHHHHHHT---CSEEEEESCHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHcCCCc----c-CCHHHHHHHHHHHHHHC---cCeEEEEecHHHHHHHHHHHhc
Confidence            445677777754221    1 24567788889999885   5689999999999999998544

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.03  E-value=0.3  Score=37.05  Aligned_cols=33  Identities=12%  Similarity=-0.030  Sum_probs=26.6

Q ss_pred             HHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHH
Q 031493           33 ALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKM   68 (158)
Q Consensus        33 ~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKl   68 (158)
                      ...+.++|++.+.   .+.+.++++|+|||.+|++.
T Consensus        49 ~~~~~~~~A~~~g---~e~~~~t~g~t~a~~~~~~a   81 (364)
T d2e7ja1          49 HDFIHNQLPKFLG---CDVARVTNGAREAKFAVMHS   81 (364)
T ss_dssp             HHHHHTHHHHHTT---SSEEEEESSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC---cCEEEEECcHHHHHHHHHHH
Confidence            3456677888774   67899999999999999973

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.57  E-value=0.28  Score=37.86  Aligned_cols=21  Identities=10%  Similarity=0.088  Sum_probs=17.6

Q ss_pred             CCcEEEeCChHHHHHHHHHHH
Q 031493           49 ASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus        49 l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      .+.++|+.|||||+|++++=.
T Consensus        57 ~~~i~~t~sgT~a~~~~~~~l   77 (382)
T d2bkwa1          57 SQPFVLAGSGTLGWDIFASNF   77 (382)
T ss_dssp             CEEEEEESCTTHHHHHHHHHH
T ss_pred             CeEEEEeCcHHHHHHHHHHHH
Confidence            456899999999999998743

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=87.47  E-value=0.36  Score=37.17  Aligned_cols=65  Identities=9%  Similarity=-0.067  Sum_probs=38.9

Q ss_pred             CCcHHHHHHHHHHHHhcCccCCCCC-CC----hHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493            4 WFQIELARDMGYTAARFGHVMFPEN-VY----EPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus         4 h~hP~Iv~Av~eQl~~l~~~~~~~~-~~----~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      -....|++|+.+.++.......... ..    +...++-+.|++++.-+ .+.+.|+++||||+..++...
T Consensus        18 ~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~i~~~~g~t~a~~~~~~~l   87 (381)
T d1elua_          18 ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVD-PNTITITDNVTTGCDIVLWGL   87 (381)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSC-GGGEEEESSHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCC-cccEEEECChHHHhhhcchhh
Confidence            3455688999888765432211011 01    11223445566666533 467999999999999987643

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=86.91  E-value=0.14  Score=39.23  Aligned_cols=38  Identities=21%  Similarity=0.054  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493           32 PALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus        32 ~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      ...+.-+.|.+++.-+....++|+.|||+|+|+++...
T Consensus        52 i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~   89 (377)
T d1vjoa_          52 LMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANA   89 (377)
T ss_dssp             HHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhc
Confidence            34455566666653221347888899999999998653

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=86.64  E-value=1  Score=36.17  Aligned_cols=61  Identities=8%  Similarity=-0.128  Sum_probs=46.7

Q ss_pred             CcHHHHHHHHHHHHhcCccCC-CC---CCChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHH
Q 031493            5 FQIELARDMGYTAARFGHVMF-PE---NVYEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKM   68 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~~~-~~---~~~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKl   68 (158)
                      +||+|++|+.+.+++...... ..   -..+...+|-++|++...   .+.+.+.+||..||-.++..
T Consensus        60 ~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g---~e~all~~sG~~An~~~i~~  124 (396)
T d2bwna1          60 QHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ---KEAALVFSSAYNANDATLST  124 (396)
T ss_dssp             GCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTT---CSEEEEESCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhC---CCceeeeecchHHHHHHHHH
Confidence            599999999999998654211 11   134666788899999875   56788889999999998874

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.88  E-value=0.089  Score=40.31  Aligned_cols=36  Identities=17%  Similarity=0.088  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHhhcCCC-CCCcEEEeCChHHHHHHHHH
Q 031493           32 PALECAELLLQGVGKG-WASRAYFSDNGSTAIEIALK   67 (158)
Q Consensus        32 ~~~~LAe~L~~~~P~~-~l~~v~f~~SGSEA~E~AlK   67 (158)
                      ...+.-++|.+++.-+ +...++|+.|||+|+++++.
T Consensus        34 ~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~   70 (361)
T d1m32a_          34 VVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLG   70 (361)
T ss_dssp             THHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHH
Confidence            3455666666665432 02237888999999999885

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.48  E-value=0.16  Score=39.36  Aligned_cols=37  Identities=22%  Similarity=0.037  Sum_probs=25.9

Q ss_pred             HHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493           33 ALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus        33 ~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      ..+.-+.|.+++.-+....++|+.|||+|+|+++..-
T Consensus        54 ~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l   90 (388)
T d1h0ca_          54 MDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNV   90 (388)
T ss_dssp             HHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHh
Confidence            4556667777664321225888999999999999755

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=84.45  E-value=1  Score=34.77  Aligned_cols=66  Identities=14%  Similarity=0.031  Sum_probs=41.5

Q ss_pred             CcHHHHHHHHHHHHhcCcc-CCCCCCChH-------HHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHHh
Q 031493            5 FQIELARDMGYTAARFGHV-MFPENVYEP-------ALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFR   71 (158)
Q Consensus         5 ~hP~Iv~Av~eQl~~l~~~-~~~~~~~~~-------~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR~   71 (158)
                      -+|.|++|+.+.+.+.... +.....+..       ..++-+++++++.-+ .+.|.|++++||++..++.....
T Consensus        14 ~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~-~~~I~~~~~~t~~l~~~~~~~~~   87 (391)
T d1p3wa_          14 VDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGAD-PREIVFTSGATESDNLAIKGAAN   87 (391)
T ss_dssp             CCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCC-GGGEEEESSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCC-CCcEEEECCHHHHHHHHHhhhhh
Confidence            4789999998876543221 111112221       223445666766544 57899999999999998876653

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=84.08  E-value=0.25  Score=38.06  Aligned_cols=39  Identities=13%  Similarity=-0.011  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHHH
Q 031493           32 PALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAF   70 (158)
Q Consensus        32 ~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlAR   70 (158)
                      ...+.-++|.+++.-+....++|+.|||+|+|++++-..
T Consensus        51 i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l~   89 (388)
T d2ch1a1          51 TMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL   89 (388)
T ss_dssp             HHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHhc
Confidence            345566777777543224567788899999999987553

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=82.87  E-value=0.74  Score=37.43  Aligned_cols=37  Identities=14%  Similarity=0.078  Sum_probs=31.7

Q ss_pred             ChHHHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHHH
Q 031493           30 YEPALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKMA   69 (158)
Q Consensus        30 ~~~~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKlA   69 (158)
                      .+...+|.++++++++   .+.+.|++||+.||.+|++.-
T Consensus        74 dpt~~~lE~~~a~l~G---~e~al~~~SGt~An~~a~~~l  110 (456)
T d1c7ga_          74 SENFYHLEKTVKELFG---FKHIVPTHQGRGAENLLSQLA  110 (456)
T ss_dssp             CHHHHHHHHHHHHHHC---CSEEEEESSHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHhC---CCeEEECCCHHHHHHHHHHHh
Confidence            5667889999999986   678999999999999999753

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=80.08  E-value=0.39  Score=37.65  Aligned_cols=35  Identities=20%  Similarity=0.247  Sum_probs=24.1

Q ss_pred             HHHHHHHHHhhcCCCCCCcEEEeCChHHHHHHHHHH
Q 031493           33 ALECAELLLQGVGKGWASRAYFSDNGSTAIEIALKM   68 (158)
Q Consensus        33 ~~~LAe~L~~~~P~~~l~~v~f~~SGSEA~E~AlKl   68 (158)
                      ..+.-+.|.+++..+ .+-++|..|||+|+|+++.-
T Consensus        35 ~~~~~~~l~~ll~~~-~~~i~~~gsgT~a~e~~~~n   69 (348)
T d1iuga_          35 FLKARGLLREAFRTE-GEVLILTGSGTLAMEALVKN   69 (348)
T ss_dssp             HHHHHHHHHHHHTCS-SEEEEEESCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC-CCEEEEeCchHHHHHHHHHh
Confidence            344555566665433 45677889999999999864