Citrus Sinensis ID: 031495

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHc
Coil and Loop (DISEMBL)
mrwgvaagRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAagvnivpsMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL
Flexible Loop (DISEMBL)
MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL
Low Complexity Region (SEG)
MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL
Disordered region (IsUnstruct)
***GVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWL****
Disordered Region (DISOPRED)
*******GRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL
Disordered Region (DISEMBL)
********RKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL
Disordered Region (DISPRO)
MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
224099213	306	predicted protein [Populus trichocarpa]	1.0	0.516	0.848	3e-71
255546947	306	conserved hypothetical protein [Ricinus	1.0	0.516	0.822	3e-69
449499494	469	PREDICTED: uncharacterized LOC101204847	1.0	0.336	0.772	1e-64
449446255	301	PREDICTED: uncharacterized protein LOC10	1.0	0.524	0.772	3e-64
356499992	287	PREDICTED: uncharacterized protein LOC10	1.0	0.550	0.759	3e-64
225423785	286	PREDICTED: uncharacterized protein LOC10	1.0	0.552	0.753	8e-64
297737924	192	unnamed protein product [Vitis vinifera]	1.0	0.822	0.753	1e-63
357496929	247	Membrane protein [Medicago truncatula] g	1.0	0.639	0.727	9e-62
297851064	293	hypothetical protein ARALYDRAFT_890129 [	1.0	0.539	0.708	6e-61
22329794	289	uncharacterized protein [Arabidopsis tha	1.0	0.546	0.708	1e-60

>gi|224099213|ref|XP_002311406.1| predicted protein [Populus trichocarpa] gi|222851226|gb|EEE88773.1| predicted protein [Populus trichocarpa]

 Score =  272 bits (696), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 134/158 (84%), Positives = 147/158 (93%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           +RWGVA GRKTMVATAMLL VLSGPVKAL YLLTHG++GF+MGSLWR+G +WGLSIFLCT
Sbjct: 149 LRWGVAGGRKTMVATAMLLFVLSGPVKALTYLLTHGLVGFTMGSLWRMGANWGLSIFLCT 208

Query: 61  IARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 120
           IAR+ GA+GY+LTSSFLIRENILALITINIHASLTFIF+AAG+N VPSMN IY +FG LV
Sbjct: 209 IARATGAVGYVLTSSFLIRENILALITINIHASLTFIFAAAGINTVPSMNFIYSLFGILV 268

Query: 121 LLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL 158
           +LNSGFFVFLLHLLYSVFLTRLGMK SLRLPRWLE AL
Sbjct: 269 VLNSGFFVFLLHLLYSVFLTRLGMKDSLRLPRWLEKAL 306

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546947|ref|XP_002514531.1| conserved hypothetical protein [Ricinus communis] gi|223546135|gb|EEF47637.1| conserved hypothetical protein [Ricinus communis]

 Score =  266 bits (679), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 130/158 (82%), Positives = 142/158 (89%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           MRWGVAAGRKTMVATAMLL VLSGP+KAL YLLTHG++GF+MGSLWRL  DWGLSIFLCT
Sbjct: 148 MRWGVAAGRKTMVATAMLLFVLSGPLKALTYLLTHGIVGFTMGSLWRLRADWGLSIFLCT 207

Query: 61  IARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 120
           IAR+ GAMGY+  +SFLIRENILALITINIHASLT IF+A G+N +PSMN+IY +FG LV
Sbjct: 208 IARATGAMGYVFVTSFLIRENILALITINIHASLTLIFAAIGINTIPSMNLIYTLFGILV 267

Query: 121 LLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL 158
           LLNSG FVFLLHLLYSVF TRLGMK SLRLPRWLE AL
Sbjct: 268 LLNSGSFVFLLHLLYSVFFTRLGMKDSLRLPRWLEKAL 305

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499494|ref|XP_004160832.1| PREDICTED: uncharacterized LOC101204847 [Cucumis sativus]

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 122/158 (77%), Positives = 139/158 (87%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           MRWG++AGRKTMVAT +LLLVLSGPVKAL YLL HG++GF+MGSLWRLG +W  SIFLCT
Sbjct: 312 MRWGISAGRKTMVATFLLLLVLSGPVKALTYLLRHGLVGFTMGSLWRLGANWSTSIFLCT 371

Query: 61  IARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 120
           I R+ GA+GY+L SSFLIRENILALITINIHASLT IF+A GVN++PSMN IY IFGTLV
Sbjct: 372 IVRAFGAVGYVLVSSFLIRENILALITINIHASLTLIFTAWGVNLIPSMNAIYAIFGTLV 431

Query: 121 LLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL 158
            LN G F+FLLHLLYS+FLTRLG+K SL LPRWLE A+
Sbjct: 432 FLNCGCFMFLLHLLYSIFLTRLGLKTSLTLPRWLEKAM 469

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446255|ref|XP_004140887.1| PREDICTED: uncharacterized protein LOC101204847 [Cucumis sativus]

 Score =  249 bits (636), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 122/158 (77%), Positives = 139/158 (87%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           MRWG++AGRKTMVAT +LLLVLSGPVKAL YLL HG++GF+MGSLWRLG +W  SIFLCT
Sbjct: 144 MRWGISAGRKTMVATFLLLLVLSGPVKALTYLLRHGLVGFTMGSLWRLGANWSTSIFLCT 203

Query: 61  IARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 120
           I R+ GA+GY+L SSFLIRENILALITINIHASLT IF+A GVN++PSMN IY IFGTLV
Sbjct: 204 IVRAFGAVGYVLVSSFLIRENILALITINIHASLTLIFTAWGVNLIPSMNAIYAIFGTLV 263

Query: 121 LLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL 158
            LN G F+FLLHLLYS+FLTRLG+K SL LPRWLE A+
Sbjct: 264 FLNCGCFMFLLHLLYSIFLTRLGLKTSLTLPRWLEKAM 301

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499992|ref|XP_003518819.1| PREDICTED: uncharacterized protein LOC100783446 [Glycine max]

 Score =  249 bits (635), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 120/158 (75%), Positives = 140/158 (88%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           MRWGV AGRKT+VAT +LLLVLSGPVKAL YLL HG++GF+MG+LWR G  W +SIFLCT
Sbjct: 130 MRWGVDAGRKTLVATTILLLVLSGPVKALTYLLKHGIVGFTMGTLWRTGASWNMSIFLCT 189

Query: 61  IARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 120
           I R+ GA+G++L SSFLIRENILALITINIHASLTF+ +AAGV  +PSMNVIY +FG LV
Sbjct: 190 IVRALGAVGFVLISSFLIRENILALITINIHASLTFLLTAAGVTSIPSMNVIYTLFGILV 249

Query: 121 LLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL 158
           L+NSG F+FLLHLLYSVFLTR+GMK+SLRLPRWLE A+
Sbjct: 250 LINSGCFMFLLHLLYSVFLTRMGMKSSLRLPRWLERAI 287

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423785|ref|XP_002279949.1| PREDICTED: uncharacterized protein LOC100256033 isoform 1 [Vitis vinifera]

 Score =  248 bits (632), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 119/158 (75%), Positives = 141/158 (89%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           MRWGVAAGRKTMVAT MLL VLSGPVKA  YLL HG++G +MGSLWRLG +WGLSI LCT
Sbjct: 129 MRWGVAAGRKTMVATTMLLFVLSGPVKASTYLLLHGLVGLTMGSLWRLGANWGLSICLCT 188

Query: 61  IARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 120
             R+ GAMGY+L SSFLIRENILALIT+N+HAS+T++F+A GVN +PSM++IY +FGTL+
Sbjct: 189 FVRAMGAMGYVLISSFLIRENILALITLNVHASITYMFTAIGVNTIPSMDLIYALFGTLL 248

Query: 121 LLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL 158
           LLNSGFFVFLLH+LY+VFL+RLGMKASL +PRWLE A+
Sbjct: 249 LLNSGFFVFLLHILYAVFLSRLGMKASLTMPRWLEKAI 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737924|emb|CBI27125.3| unnamed protein product [Vitis vinifera]

 Score =  247 bits (631), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 119/158 (75%), Positives = 141/158 (89%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           MRWGVAAGRKTMVAT MLL VLSGPVKA  YLL HG++G +MGSLWRLG +WGLSI LCT
Sbjct: 35  MRWGVAAGRKTMVATTMLLFVLSGPVKASTYLLLHGLVGLTMGSLWRLGANWGLSICLCT 94

Query: 61  IARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 120
             R+ GAMGY+L SSFLIRENILALIT+N+HAS+T++F+A GVN +PSM++IY +FGTL+
Sbjct: 95  FVRAMGAMGYVLISSFLIRENILALITLNVHASITYMFTAIGVNTIPSMDLIYALFGTLL 154

Query: 121 LLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL 158
           LLNSGFFVFLLH+LY+VFL+RLGMKASL +PRWLE A+
Sbjct: 155 LLNSGFFVFLLHILYAVFLSRLGMKASLTMPRWLEKAI 192

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357496929|ref|XP_003618753.1| Membrane protein [Medicago truncatula] gi|355493768|gb|AES74971.1| Membrane protein [Medicago truncatula]

 Score =  241 bits (614), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 115/158 (72%), Positives = 137/158 (86%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           MRWG+ AGRKTMVAT +LL VLSGPVKAL YLL HG++G++MG+LWRL   W LS+FLC 
Sbjct: 90  MRWGIDAGRKTMVATTILLFVLSGPVKALTYLLKHGIVGYTMGTLWRLETSWSLSVFLCA 149

Query: 61  IARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 120
           I RS GA+G++L SSFLIRENILALITINIHASLTF+ +AAGVN +PSMN IY +FG LV
Sbjct: 150 IVRSIGAVGFVLISSFLIRENILALITINIHASLTFVLTAAGVNSIPSMNFIYTLFGILV 209

Query: 121 LLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL 158
           LLN G F+FLLH+LYSVFLTR+GMK+SL+LPRWL+ A+
Sbjct: 210 LLNGGCFMFLLHMLYSVFLTRMGMKSSLKLPRWLKKAI 247

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851064|ref|XP_002893413.1| hypothetical protein ARALYDRAFT_890129 [Arabidopsis lyrata subsp. lyrata] gi|297339255|gb|EFH69672.1| hypothetical protein ARALYDRAFT_890129 [Arabidopsis lyrata subsp. lyrata]

 Score =  238 bits (607), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 112/158 (70%), Positives = 141/158 (89%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           +RW +A GRKTMVAT MLL +LSGPVKAL Y LTHG++G ++GSLWR+G  W LSIF+CT
Sbjct: 136 IRWNIAGGRKTMVATVMLLFILSGPVKALTYFLTHGLVGLALGSLWRMGASWRLSIFVCT 195

Query: 61  IARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 120
           + R+ G +GY+LTSSFLIRENILA+ITINIHASL+++F+A G+NI+PSM++IY+IFGT++
Sbjct: 196 MVRALGLIGYVLTSSFLIRENILAVITINIHASLSYVFTAMGLNIMPSMSLIYMIFGTVL 255

Query: 121 LLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL 158
           LLNSGFFV LLHLLYS+FLTRLGMK+SLRLP WL+ A+
Sbjct: 256 LLNSGFFVLLLHLLYSIFLTRLGMKSSLRLPAWLDKAI 293

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329794|ref|NP_173943.2| uncharacterized protein [Arabidopsis thaliana] gi|18252157|gb|AAL61911.1| unknown protein [Arabidopsis thaliana] gi|21386935|gb|AAM47871.1| unknown protein [Arabidopsis thaliana] gi|332192537|gb|AEE30658.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/158 (70%), Positives = 140/158 (88%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           +RW +A GRKTMVAT MLL +LSGPVKAL Y LTHG++G ++GSLW +G  W LSIFLCT
Sbjct: 132 IRWNIAGGRKTMVATVMLLFILSGPVKALTYFLTHGLVGLALGSLWSMGASWRLSIFLCT 191

Query: 61  IARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 120
           + R+ G +GY+LTSSFLIRENILA+ITINIHASL+++F+A G+NI+PSM++IY+IFGT++
Sbjct: 192 MVRALGLIGYVLTSSFLIRENILAVITINIHASLSYVFTAMGLNIMPSMSLIYMIFGTVL 251

Query: 121 LLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL 158
           LLNSGFFV LLHLLYS+FLTRLGMK+SLRLP WL+ A+
Sbjct: 252 LLNSGFFVLLLHLLYSIFLTRLGMKSSLRLPAWLDKAI 289

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
TAIR|locus:2028815	289	AT1G26180 [Arabidopsis thalian	1.0	0.546	0.708	2.4e-60

TAIR|locus:2028815 AT1G26180 [Arabidopsis thaliana (taxid:3702)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 112/158 (70%), Positives = 140/158 (88%)

Query:     1 MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
             +RW +A GRKTMVAT MLL +LSGPVKAL Y LTHG++G ++GSLW +G  W LSIFLCT
Sbjct:   132 IRWNIAGGRKTMVATVMLLFILSGPVKALTYFLTHGLVGLALGSLWSMGASWRLSIFLCT 191

Query:    61 IARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 120
             + R+ G +GY+LTSSFLIRENILA+ITINIHASL+++F+A G+NI+PSM++IY+IFGT++
Sbjct:   192 MVRALGLIGYVLTSSFLIRENILAVITINIHASLSYVFTAMGLNIMPSMSLIYMIFGTVL 251

Query:   121 LLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL 158
             LLNSGFFV LLHLLYS+FLTRLGMK+SLRLP WL+ A+
Sbjct:   252 LLNSGFFVLLLHLLYSIFLTRLGMKSSLRLPAWLDKAI 289


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.332   0.143   0.435    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      158       158   0.00085  106 3  11 21  0.36    31
                                                     30  0.43    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  563 (60 KB)
  Total size of DFA:  127 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.36u 0.08s 13.44t   Elapsed:  00:00:00
  Total cpu time:  13.36u 0.08s 13.44t   Elapsed:  00:00:00
  Start:  Sat May 11 04:19:25 2013   End:  Sat May 11 04:19:25 2013

GO:0009507 "chloroplast" evidence=ISM

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	158
PF09991	290	DUF2232: Predicted membrane protein (DUF2232); Int	99.87
COG4241	314	Predicted membrane protein [Function unknown]	99.52
COG4241	314	Predicted membrane protein [Function unknown]	98.88
PF13858	163	DUF4199: Protein of unknown function (DUF4199)	96.37
TIGR02357	183	thia_yuaJ probable proton-coupled thiamine transpo	95.92
TIGR02359	160	thiW thiW protein. Levels of thiamine pyrophosphat	93.76
PF07155	169	ECF-ribofla_trS: ECF-type riboflavin transporter,	92.36
PF09991	290	DUF2232: Predicted membrane protein (DUF2232); Int	91.74
PF09515	177	Thia_YuaJ: Thiamine transporter protein (Thia_YuaJ	91.11
PF07456	148	Hpre_diP_synt_I: Heptaprenyl diphosphate synthase	90.65
PRK11339	508	abgT putative aminobenzoyl-glutamate transporter;	84.01
PRK13661	182	hypothetical protein; Provisional	83.97
PF12822	172	DUF3816: Protein of unknown function (DUF3816); In	82.85
COG5547	62	Small integral membrane protein [Function unknown]	81.41
TIGR00819	513	ydaH p-Aminobenzoyl-glutamate transporter family.	80.97
PF03806	502	ABG_transport: AbgT putative transporter family; I	80.6

>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan

Probab=99.87  E-value=3.1e-20  Score=151.64  Aligned_cols=152  Identities=28%  Similarity=0.481  Sum_probs=139.3

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 031495            1 MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRE   80 (158)
Q Consensus         1 ~R~g~k~~~~~~~va~lll~~l~Gp~~al~~~l~fG~lGv~lG~~~~~~~s~~~~~~~g~l~~l~~~~~~~~~s~~l~g~   80 (158)
                      .|||.|.+..+.++++++...+.||..++.+.+.+++.|+.+|+++||++++..++..++++..++.+..+.+.....|+
T Consensus        33 ~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  112 (290)
T PF09991_consen   33 LRYGLKYGLIALLAAAVLLALFGGPVSALFYLLFFGLPGLVLGYLLRKKRSWSRSILAGTLASLLGVLVFFLLLAYLSGI  112 (290)
T ss_pred             HHhChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            48999999998888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHH---HcCCCC----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 031495           81 NILALITINIHASLTFIFS---AAGVNI----------VPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKAS  147 (158)
Q Consensus        81 N~~~~~~~~~~~~l~~~~~---~~G~~~----------~~~~~~i~~~~p~llv~~s~i~~~i~~~va~~vL~Rlg~~~~  147 (158)
                      |+.++..++++|..|+..+   +.|.++          ++..+.++.+.|+++++.++++++++|.+++.++||.|.+ .
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~P~~~~i~~~~~~~~~~~l~~~il~r~~~~-~  191 (290)
T PF09991_consen  113 NIFEQLIEQIQESIEQVLKIYSQSGLPQDQVDQLQKNLQQIAELIKRLFPALLIISALLMSLINYYLARRILRRLGIP-I  191 (290)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-C
Confidence            9999999999999999765   446532          2336889999999999999999999999999999999995 8


Q ss_pred             CCCcHH
Q 031495          148 LRLPRW  153 (158)
Q Consensus       148 p~~P~~  153 (158)
                      |++||.
T Consensus       192 ~~~~~~  197 (290)
T PF09991_consen  192 PPLPPF  197 (290)
T ss_pred             CCCCch
Confidence            888875

>COG4241 Predicted membrane protein [Function unknown]

Probab=99.52  E-value=1.3e-14  Score=120.34  Aligned_cols=152  Identities=18%  Similarity=0.123  Sum_probs=133.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Q 031495            1 MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAM-GYILTSSFLIR   79 (158)
Q Consensus         1 ~R~g~k~~~~~~~va~lll~~l~Gp~~al~~~l~fG~lGv~lG~~~~~~~s~~~~~~~g~l~~l~~~~-~~~~~s~~l~g   79 (158)
                      .|||.|.+.. +..++...+.+.+|.......+++++-|+.+|...||..+.+..+..++.++++... +++.+|..+.+
T Consensus        47 ~k~g~k~~v~-~~~v~~~~~~~i~~~~l~~v~l~~~~p~vv~~~~~kr~e~~f~i~~~~s~~amiwi~~~yF~ls~~~~~  125 (314)
T COG4241          47 LKHGLKHGVE-VLIVAVGVVILIDSKALLLVALMFLIPGVVMGILLKRVEKAFAIMSGASTAAMIWIINFYFPLSIVIRI  125 (314)
T ss_pred             HHhccchhhh-eeeEeeeeeEEecchHHHHHHHHHhCchhhhhHHHHhccchhhHHhhHHHHHHHHHHHHHHHhhhhhcc
Confidence            3899999855 577777788888899998999999999999999999998999888888999999999 88999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHH---HcCCCC-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCC
Q 031495           80 ENILALITINIHASLTFIFS---AAGVNI-------VPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASLR  149 (158)
Q Consensus        80 ~N~~~~~~~~~~~~l~~~~~---~~G~~~-------~~~~~~i~~~~p~llv~~s~i~~~i~~~va~~vL~Rlg~~~~p~  149 (158)
                      +||.+...++++++++.+.+   ..|+..       +++....+++.|..+++.+.++++.++.++.+++||++.+ +|.
T Consensus       126 inpv~~a~~~~Rqsl~~a~~~~i~~G~~~~~~l~iLees~~~~~~lgP~~ivi~~~i~a~~t~~vg~pilrR~~~~-v~~  204 (314)
T COG4241         126 INPVDDAVVYLRQSLNAAIKMAIAAGNNVDDALKILEESFTQQLYLGPGRIVIFGTIFALMTLLVGFPILRRLKIK-VPI  204 (314)
T ss_pred             cCCcHHHHHHHHhhhHHHHHHHHHccCChHHHHHHHHHHHhhHHhhCCceeehhHHHHHHHHHHHhHHHHHhCCcc-CCC
Confidence            99999999999999998643   566543       3445666788999999999999999999999999999996 998


Q ss_pred             CcHHH
Q 031495          150 LPRWL  154 (158)
Q Consensus       150 ~P~~~  154 (158)
                      ++|-.
T Consensus       205 ~~p~~  209 (314)
T COG4241         205 FLPFR  209 (314)
T ss_pred             cccee
Confidence            88743

>COG4241 Predicted membrane protein [Function unknown]

Probab=98.88  E-value=2.5e-09  Score=89.09  Aligned_cols=155  Identities=13%  Similarity=0.041  Sum_probs=125.1

Q ss_pred             CCcchhHHHHHHHHHH---------HHHHH----HhcchHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHH
Q 031495            1 MRWGVAAGRKTMVATA---------MLLLV----LSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGA   67 (158)
Q Consensus         1 ~R~g~k~~~~~~~va~---------lll~~----l~Gp~~al~~~l~fG~lGv~lG~~~~~~~s~~~~~~~g~l~~l~~~   67 (158)
                      +||+...++..+..+|         +..++    .+||.+.+.+..+|+.++...|..|-||.+|.....-+.....++.
T Consensus       136 ~Rqsl~~a~~~~i~~G~~~~~~l~iLees~~~~~~lgP~~ivi~~~i~a~~t~~vg~pilrR~~~~v~~~~p~~~~~f~~  215 (314)
T COG4241         136 LRQSLNAAIKMAIAAGNNVDDALKILEESFTQQLYLGPGRIVIFGTIFALMTLLVGFPILRRLKIKVPIFLPFRNWTFPN  215 (314)
T ss_pred             HHhhhHHHHHHHHHccCChHHHHHHHHHHHhhHHhhCCceeehhHHHHHHHHHHHhHHHHHhCCccCCCccceeeEeech
Confidence            4899999999888899         88898    9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH-cCC-CCcchHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhh
Q 031495           68 MGYILTSSFLIRENILALITINIHASLTFIFSA-AGV-NIVPSMN--VIYVIFGTLVLLN-SGFFVFLLHLLYSVFLTRL  142 (158)
Q Consensus        68 ~~~~~~s~~l~g~N~~~~~~~~~~~~l~~~~~~-~G~-~~~~~~~--~i~~~~p~llv~~-s~i~~~i~~~va~~vL~Rl  142 (158)
                      .++++..+.+.++|.|++-+.|+.+++++-+.. +|. -..|.++  ..+.-+-.+--.+ ++++.+-.|......+.|+
T Consensus       216 ~fl~~ylivv~~~~l~~~~~gqv~~~I~wnfl~vl~l~l~iqGlSvI~~y~~akgl~~av~vli~ilgiilt~ll~lvrl  295 (314)
T COG4241         216 SFLFWYLIVVCLELLWKYENGQVTYSIYWNFLMVLGLLLAIQGLSVIFFYLKAKGLPNAVIVLILILGIILTPLLYLVRL  295 (314)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhccccceeeehhhhccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999996553 221 1123111  1111111122222 5566677777888888899


Q ss_pred             CCCCCCCCcHHHHh
Q 031495          143 GMKASLRLPRWLEM  156 (158)
Q Consensus       143 g~~~~p~~P~~~~~  156 (158)
                      +.. ++.+|.|.++
T Consensus       296 lg~-Id~~~~~rki  308 (314)
T COG4241         296 LGV-IDLGFDLRKI  308 (314)
T ss_pred             cCC-CCCCHHHHHH
Confidence            995 9999999886

>PF13858 DUF4199: Protein of unknown function (DUF4199)

Probab=96.37  E-value=0.28  Score=36.83  Aligned_cols=89  Identities=10%  Similarity=0.121  Sum_probs=53.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHcCCCCcch-------HHHHHH----HHHH
Q 031495           51 DWGLSIFLCTIARSAGAMGYILTSSFLIRE-NILALITINIHASLTFIFSAAGVNIVPS-------MNVIYV----IFGT  118 (158)
Q Consensus        51 s~~~~~~~g~l~~l~~~~~~~~~s~~l~g~-N~~~~~~~~~~~~l~~~~~~~G~~~~~~-------~~~i~~----~~p~  118 (158)
                      |.++.+..|.++.+++-++.-+....+++. ||- ...+..+...|++ ++.+.+++..       .++-+.    ....
T Consensus        62 sf~~a~~~g~~~~~ia~li~~v~~~i~~~~IdP~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (163)
T PF13858_consen   62 SFGQAFKVGFLISLIAGLISAVFQYIYFNYIDPD-FFENYIEAQIEEM-KESGSNPEMIEEQIEQELEMKESFSPFSLAF  139 (163)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHH-HHcccCHhhHHHHHHHHHHHHHhcCcHHHHH
Confidence            788999999999999998888888887776 873 3344444444444 5555443111       122222    2233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Q 031495          119 LVLLNSGFFVFLLHLLYSVFLTR  141 (158)
Q Consensus       119 llv~~s~i~~~i~~~va~~vL~R  141 (158)
                      ..++.+++.-++.=++...++||
T Consensus       140 ~~~~~~l~~G~i~sli~a~i~kk  162 (163)
T PF13858_consen  140 SGFISNLIFGFIISLIIALILKK  162 (163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC
Confidence            34555555555555566666665

>TIGR02357 thia_yuaJ probable proton-coupled thiamine transporter YuaJ

Probab=95.92  E-value=0.13  Score=40.45  Aligned_cols=47  Identities=28%  Similarity=0.427  Sum_probs=32.7

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhc-c-----hHHHH-HHHHHHHHHHHHHHHHhhc
Q 031495            1 MRWGVAAGRKTMVATAMLLLVLSG-P-----VKALA-YLLTHGVLGFSMGSLWRLG   49 (158)
Q Consensus         1 ~R~g~k~~~~~~~va~lll~~l~G-p-----~~al~-~~l~fG~lGv~lG~~~~~~   49 (158)
                      .|||.|+|...-++.+++ .++.| +     ...+. +.+.|+.+|+ =|..+|++
T Consensus        44 ~~~Gp~~G~~~G~i~Gll-~~~~g~~~~~~p~q~~ldy~~a~~~iGl-aGl~~~~~   97 (183)
T TIGR02357        44 FRRGLKAGLVAGLIWGLL-KIILGTAYILHPVQVLLDYILAFMALGL-AGVFRIKK   97 (183)
T ss_pred             HHHccHHHHHHHHHHHHH-HHHhCCcccccHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            389999997765555544 44445 3     34444 7899999999 78888765

Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis. Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Steptococcus mutans and Streptoccus pyogenes), yuaJ is the only THI-regulated gene. Evidence from Bacillus cereus indicates thiamine uptake is coupled to proton translocation.

>TIGR02359 thiW thiW protein

Probab=93.76  E-value=1.2  Score=34.43  Aligned_cols=75  Identities=17%  Similarity=0.104  Sum_probs=52.7

Q ss_pred             chhHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 031495            4 GVAAGRKTMVATAMLLLVLS-GPVKALAYLLTHGVLGFSMGSLWRLGV-DWGLSIFLCTIARSAGAMGYILTSSFLIREN   81 (158)
Q Consensus         4 g~k~~~~~~~va~lll~~l~-Gp~~al~~~l~fG~lGv~lG~~~~~~~-s~~~~~~~g~l~~l~~~~~~~~~s~~l~g~N   81 (158)
                      |..+|.....+++++-.++. |+..+.   ..+-+.++.-|+.|||++ .++..+....-+..+|.++.+-+..+++|.+
T Consensus        46 GP~~g~~~a~i~~ll~~l~~~g~~~af---pg~~~~a~laGliyrk~~~~~~a~~ge~igt~iig~~~s~pi~~~~~g~~  122 (160)
T TIGR02359        46 GPWYALAVAFIIGLLRNTLGLGTVLAF---PGGMPGALLAGLLYRFGRKHYWASLGEILGTGIIGSLLAYPVAAWLLGSS  122 (160)
T ss_pred             chHHHHHHHHHHHHHHHHhCCCchHHH---HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            66677666666666654431 233333   366678888999999844 5567777888888899999999999998864

Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.

>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins

Probab=92.36  E-value=3.7  Score=30.92  Aligned_cols=50  Identities=22%  Similarity=0.339  Sum_probs=36.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHHHHhhcCch
Q 031495            3 WGVAAGRKTMVATAMLLLVLSGPVKALAY-LLTHGVLGFSMGSLWRLGVDW   52 (158)
Q Consensus         3 ~g~k~~~~~~~va~lll~~l~Gp~~al~~-~l~fG~lGv~lG~~~~~~~s~   52 (158)
                      .|.+.|.....++..+--++.|...-.++ .+..|+.|...|+.++|+++.
T Consensus        49 ~Gp~~G~ivg~ig~~l~dll~g~~~~~~~~~i~~~~~g~i~g~~~~~~~~~   99 (169)
T PF07155_consen   49 FGPKYGAIVGAIGDLLSDLLSGYGPWAPFTMISKGLMGFIAGLIFRKKKKK   99 (169)
T ss_pred             HChHHHHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHhccc
Confidence            36777867655666666666655445555 899999999999999997433

The function of this family is unknown.; GO: 0016020 membrane

>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan

Probab=91.74  E-value=4.2  Score=32.84  Aligned_cols=140  Identities=11%  Similarity=-0.062  Sum_probs=67.5

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHH---h
Q 031495            2 RWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFL---I   78 (158)
Q Consensus         2 R~g~k~~~~~~~va~lll~~l~Gp~~al~~~l~fG~lGv~lG~~~~~~~s~~~~~~~g~l~~l~~~~~~~~~s~~l---~   78 (158)
                      |++.-....+.++..+......|-...+.+.++-=.+|..+-.-++..++.......+.+............+-.=   .
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  117 (290)
T PF09991_consen   38 KYGLIALLAAAVLLALFGGPVSALFYLLFFGLPGLVLGYLLRKKRSWSRSILAGTLASLLGVLVFFLLLAYLSGINIFEQ  117 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Confidence            4444444444444444444455555555555555566666666666666655555555554444444444333211   1


Q ss_pred             cccHHHHHHHHHHHHHHH----------HHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031495           79 RENILALITINIHASLTF----------IFSAAGVNIVPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTR  141 (158)
Q Consensus        79 g~N~~~~~~~~~~~~l~~----------~~~~~G~~~~~~~~~i~~~~p~llv~~s~i~~~i~~~va~~vL~R  141 (158)
                      -.|-+++..++..+..++          ..++.....+-...+++...-...++.+.+..++...+.++.=++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~P~~~~i~~~~~~~~~~~l~~~il~r~~~~  190 (290)
T PF09991_consen  118 LIEQIQESIEQVLKIYSQSGLPQDQVDQLQKNLQQIAELIKRLFPALLIISALLMSLINYYLARRILRRLGIP  190 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            122222333333332222          112222222344566666666666666666666666666555433

>PF09515 Thia_YuaJ: Thiamine transporter protein (Thia_YuaJ); InterPro: IPR012651 Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis

Probab=91.11  E-value=1.1  Score=35.10  Aligned_cols=77  Identities=25%  Similarity=0.263  Sum_probs=40.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhcc------h-HHHHHHHHHHHHHHHHHHHHh------hc----CchHHHHHHHHHHH
Q 031495            1 MRWGVAAGRKTMVATAMLLLVLSGP------V-KALAYLLTHGVLGFSMGSLWR------LG----VDWGLSIFLCTIAR   63 (158)
Q Consensus         1 ~R~g~k~~~~~~~va~lll~~l~Gp------~-~al~~~l~fG~lGv~lG~~~~------~~----~s~~~~~~~g~l~~   63 (158)
                      .|||.|+|..+-++.++ +-.+.||      . .-+=|.++|+.+|+ -|.+-+      ++    ++....+....++.
T Consensus        40 ~r~G~~~G~~~G~l~Gl-l~~~~g~~~~~~p~q~llDY~laf~~lGl-aGlf~~~~~~~~~~~~~~~~~~~i~~g~~i~~  117 (177)
T PF09515_consen   40 FRRGWKAGILAGFLYGL-LQFLLGPAYIVHPVQVLLDYPLAFGALGL-AGLFAKPLQKTLKNNRYKKSYLNIILGTFIAV  117 (177)
T ss_dssp             HHH-HHHHHHHHHHHHH-HHHHTT-S--SSHHHHHHHHTHHHHHGGG-GGGG-----------SSS--HHHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHH-HHHHhCCceehhHHHHHHHHHHHHHHHHH-HHhcccccchhhhhcccchhHHHHHHHHHHHH
Confidence            39999999887666665 5666776      1 22335778888887 344444      11    23344444444445


Q ss_pred             HHHHHHHHHHHHHHhc
Q 031495           64 SAGAMGYILTSSFLIR   79 (158)
Q Consensus        64 l~~~~~~~~~s~~l~g   79 (158)
                      ...++.-+..-..+++
T Consensus       118 ~~r~~~h~isGvif~~  133 (177)
T PF09515_consen  118 FLRYFCHFISGVIFFG  133 (177)
T ss_dssp             HHHHHHHHHHHHHH-G
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5555555555555544

Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Streptococcus mutans and Streptococcus pyogenes), YuaJ is the only THI-regulated gene. The thiamine transporter YuaJ, also known as ThiT, is a member of the energy coupling factor (ECF) transporters, a new class of transport proteins that shares some resemblance with ABC transporters [, ]. ; PDB: 3RLB_B.

>PF07456 Hpre_diP_synt_I: Heptaprenyl diphosphate synthase component I; InterPro: IPR010898 This family contains component I of bacterial heptaprenyl diphosphate synthase (2

Probab=90.65  E-value=5.1  Score=30.53  Aligned_cols=78  Identities=17%  Similarity=0.133  Sum_probs=54.0

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhcchHHHHHHHHHH---HHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031495            2 RWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHG---VLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLI   78 (158)
Q Consensus         2 R~g~k~~~~~~~va~lll~~l~Gp~~al~~~l~fG---~lGv~lG~~~~~~~s~~~~~~~g~l~~l~~~~~~~~~s~~l~   78 (158)
                      ..|.|.++.-.+.=.++.+++.|.+.+..+.+..+   ...++|..++|..+++...+..+......--+.|..+.+.++
T Consensus        39 ~~g~~~a~~v~~lR~~l~~l~~G~~~s~~f~~Sl~Ggl~S~~vM~ll~~~~~~~~S~~giSi~Gai~HN~gQl~va~~i~  118 (148)
T PF07456_consen   39 LLGFKEALLVALLRILLGSLLFGTLFSPSFLFSLAGGLLSLLVMALLKKLFKKKFSLIGISIAGAIAHNIGQLIVASLII  118 (148)
T ss_pred             HcChhHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35788887777777888899999986644444443   344566666666556666777777777777777887777765


Q ss_pred             c
Q 031495           79 R   79 (158)
Q Consensus        79 g   79 (158)
                      +
T Consensus       119 ~  119 (148)
T PF07456_consen  119 Q  119 (148)
T ss_pred             c
Confidence            4

5.1.30 from EC) (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme, both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7 [].

>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional

Probab=84.01  E-value=33  Score=31.21  Aligned_cols=121  Identities=17%  Similarity=0.208  Sum_probs=67.4

Q ss_pred             CcchhHHHHHHHHHHHHHHHHh----cchHH----------------HHHHHHHHHHHHHHHHHHhhcCch--HHHHHHH
Q 031495            2 RWGVAAGRKTMVATAMLLLVLS----GPVKA----------------LAYLLTHGVLGFSMGSLWRLGVDW--GLSIFLC   59 (158)
Q Consensus         2 R~g~k~~~~~~~va~lll~~l~----Gp~~a----------------l~~~l~fG~lGv~lG~~~~~~~s~--~~~~~~g   59 (158)
                      |.|+|++..+.++-...+..++    ||+|.                ....+.|-..|++.|..-++-+|.  ..-.+.-
T Consensus       259 kkgLr~Ag~~~l~~~~~i~~l~lP~~g~Lr~~~tG~l~~Sp~~~siv~~i~~~Fli~GivyG~~~g~iks~~Dv~~~m~~  338 (508)
T PRK11339        259 RFGLRIAGVVSLLFIAAIALMVIPENGILRDPINHTVMPSPFIKGIVPLIILFFFVVSLAYGIATRTIRRQADLPHLMIE  338 (508)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCCccCChHHHhHHHHHHHHHHHHHHHHhhhcccccCHHHHHHHHHH
Confidence            4567776555454444444444    33322                146778889999999999955555  4444556


Q ss_pred             HHHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031495           60 TIARSAGAMGYILTSSFLIRE----NILALITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVLLNSGFFVFLLHL  133 (158)
Q Consensus        60 ~l~~l~~~~~~~~~s~~l~g~----N~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~i~~~~p~llv~~s~i~~~i~~~  133 (158)
                      +.-.+.+.++.......+...    |.-..+    .-...+.++.+|.+..|..       ..++++++++.-|+.-.
T Consensus       339 g~~~m~~~ivl~F~~Aqfia~F~~snlG~il----av~gA~~L~~~~l~~~pl~-------i~~ill~a~iNlfI~Sg  405 (508)
T PRK11339        339 PMKEMAGFIVMVFPLAQFVAMFNWSNMGKFI----AVGLTDILESSGLSGIPAF-------VGLALLSSFLCMFIASG  405 (508)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCHHHH----HHHHHHHHHhCCCCchHHH-------HHHHHHHHHHHHccccH
Confidence            666666666665444443332    322222    2223334566776644443       56666777776665433

>PRK13661 hypothetical protein; Provisional

Probab=83.97  E-value=19  Score=28.29  Aligned_cols=46  Identities=15%  Similarity=0.143  Sum_probs=30.3

Q ss_pred             chhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhc
Q 031495            4 GVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLG   49 (158)
Q Consensus         4 g~k~~~~~~~va~lll~~l~Gp~~al~~~l~fG~lGv~lG~~~~~~   49 (158)
                      |.+.|.....++..+--++.|--.=.++++..|+.|...|...+|+
T Consensus        52 Gp~~G~lvg~ig~~L~dll~G~~~w~~~ti~~gl~G~i~Gl~~~~~   97 (182)
T PRK13661         52 GPVVGFLVGFIGHALKDFIAYGGPWWTWVLASGIIGLIIGLFKKRL   97 (182)
T ss_pred             ChHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHhcc
Confidence            5666666656666666555553233356788888999999877654

>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []

Probab=82.85  E-value=17  Score=27.06  Aligned_cols=52  Identities=15%  Similarity=0.195  Sum_probs=33.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHhcc---hHH---HHHHHHHHHHHHHHHHHHh--hcCchHH
Q 031495            3 WGVAAGRKTMVATAMLLLVLSGP---VKA---LAYLLTHGVLGFSMGSLWR--LGVDWGL   54 (158)
Q Consensus         3 ~g~k~~~~~~~va~lll~~l~Gp---~~a---l~~~l~fG~lGv~lG~~~~--~~~s~~~   54 (158)
                      -|.+.|.....++.++-.++.+|   ...   +.+.+.-.+.|+.-|+++|  |++++..
T Consensus        42 ~Gp~~G~~~g~i~~il~~l~~~~~~~~~~~~~~~~~l~~~l~gl~~g~~~~~~~~~~~~~  101 (172)
T PF12822_consen   42 LGPVWGALVGFISDILSFLIFGGGGPFIFPGFPGFTLPAALFGLIAGLLYKKLKKKSKKR  101 (172)
T ss_dssp             S-HHHHHHHHHHHHHHHHHH-TTT-SSHH---HHHHHHHHHHHHHHHHHHT--SS-SHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHH
Confidence            37788877666666655555433   333   7788888899999999984  4445443

The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.

>COG5547 Small integral membrane protein [Function unknown]

Probab=81.41  E-value=9.8  Score=24.61  Aligned_cols=45  Identities=16%  Similarity=0.268  Sum_probs=32.3

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhc
Q 031495            2 RWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLG   49 (158)
Q Consensus         2 R~g~k~~~~~~~va~lll~~l~Gp~~al~~~l~fG~lGv~lG~~~~~~   49 (158)
                      ||..-.+..+++.|.+++++  |=.+. .+++.++.+|+..|+.-+|+
T Consensus         8 kypIIgglvglliAili~t~--GfwKt-ilviil~~lGv~iGl~~~r~   52 (62)
T COG5547           8 KYPIIGGLVGLLIAILILTF--GFWKT-ILVIILILLGVYIGLYKKRT   52 (62)
T ss_pred             ccchHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHHHHHhh
Confidence            55555666777777777766  44444 46888999999999977764

>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family

Probab=80.97  E-value=35  Score=31.11  Aligned_cols=90  Identities=17%  Similarity=0.134  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCch--HHHHHHHHHHHHHHHHHHHHHHHHH----hcccHHHHHHHHHHHHHHHHHHHcCC
Q 031495           30 AYLLTHGVLGFSMGSLWRLGVDW--GLSIFLCTIARSAGAMGYILTSSFL----IRENILALITINIHASLTFIFSAAGV  103 (158)
Q Consensus        30 ~~~l~fG~lGv~lG~~~~~~~s~--~~~~~~g~l~~l~~~~~~~~~s~~l----~g~N~~~~~~~~~~~~l~~~~~~~G~  103 (158)
                      ...+.|-..|+..|..-++-+|.  ..--+.-..-.+.+..+.......+    -+=|+.+.+.....|.    +++.|.
T Consensus       309 ii~~~Fli~givyG~~~g~ik~~~di~~~m~~g~~~m~~~~vli~~A~~f~~~f~~s~i~~~ia~~~A~~----L~~~~l  384 (513)
T TIGR00819       309 FIFLFFALPGIAYGIATRSIRGEADLPHAMAEPMKELAGFIVIIFFAAQFVAFFNWSNIGKFIAVGGADF----LEESGL  384 (513)
T ss_pred             HHHHHHHHHHHHHHhhcCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH----HHhcCC
Confidence            45677889999999988853333  3333344444555554444443332    2224443333333333    334454


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHH
Q 031495          104 NIVPSMNVIYVIFGTLVLLNSGFFVFL  130 (158)
Q Consensus       104 ~~~~~~~~i~~~~p~llv~~s~i~~~i  130 (158)
                      +..+       .+..++++++++..|+
T Consensus       385 ~~~~-------~~i~~~l~~~~iNlfI  404 (513)
T TIGR00819       385 AGIP-------AFIGFALICAFICLFI  404 (513)
T ss_pred             ChHH-------HHHHHHHHHHHHHhee
Confidence            4222       3445555555555544

The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.

>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae

Probab=80.60  E-value=45  Score=30.35  Aligned_cols=101  Identities=9%  Similarity=-0.074  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCchHHHH--HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCcc
Q 031495           30 AYLLTHGVLGFSMGSLWRLGVDWGLSI--FLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIVP  107 (158)
Q Consensus        30 ~~~l~fG~lGv~lG~~~~~~~s~~~~~--~~g~l~~l~~~~~~~~~s~~l~g~N~~~~~~~~~~~~l~~~~~~~G~~~~~  107 (158)
                      ...+.|.+.|++.|..-.+-||..+..  +.-++-.+.++++.+...+++...==|..+-+-+.=.--..+++.|.+.  
T Consensus       302 iI~l~F~i~GivYG~~sG~iks~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~~~~~~--  379 (502)
T PF03806_consen  302 IIFLFFLIPGIVYGIASGTIKSDKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKSLGLPG--  379 (502)
T ss_pred             HHHHHHHHHHHHHhhhhceecCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhcCCCc--
Confidence            456788899999999999988886654  4667777778777777765554331111111111111122345566553  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031495          108 SMNVIYVIFGTLVLLNSGFFVFLLHLLYSV  137 (158)
Q Consensus       108 ~~~~i~~~~p~llv~~s~i~~~i~~~va~~  137 (158)
                           ..++-.++++.+++.-|+.-.-++|
T Consensus       380 -----~~l~i~fill~a~iNLfi~S~SaKW  404 (502)
T PF03806_consen  380 -----IPLIIGFILLTAFINLFIGSASAKW  404 (502)
T ss_pred             -----HHHHHHHHHHHHHHHHhhhcchhhH
Confidence                 2244556777777777776555544

AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	158
3rlb_A	192	THIT; S-component, ECF transporter, ABC transporte	97.34
3p5n_A	189	RIBU, riboflavin uptake protein; transporter, alph	96.69

>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}

Probab=97.34  E-value=0.00035  Score=54.24  Aligned_cols=76  Identities=17%  Similarity=0.186  Sum_probs=49.4

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhcc------hH-HHHHHHHHHHHHHHHHHHHhhcCch--HHHHHHHHHHHHHHHHHHHH
Q 031495            2 RWGVAAGRKTMVATAMLLLVLSGP------VK-ALAYLLTHGVLGFSMGSLWRLGVDW--GLSIFLCTIARSAGAMGYIL   72 (158)
Q Consensus         2 R~g~k~~~~~~~va~lll~~l~Gp------~~-al~~~l~fG~lGv~lG~~~~~~~s~--~~~~~~g~l~~l~~~~~~~~   72 (158)
                      |+|.|+|....++.++ +.++.|+      ++ -+.|.+.|+.+|++ |+.++|+++.  ...+.+..+.....+++.+.
T Consensus        60 ~~Gp~~G~~~g~i~gl-l~~i~g~~~~~~p~q~lldy~laf~~~Gla-G~f~~~~~~~~~~~~~lg~~ig~~~r~~~~~i  137 (192)
T 3rlb_A           60 RRGLTAGLVGGLIWGI-LSMITGHAYILSLSQAFLEYLVAPVSLGIA-GLFRQKTAPLKLAPVLLGTFVAVLLKYFFHFI  137 (192)
T ss_dssp             HHCHHHHHHHHHHHHH-HHHHTTCSCCSSHHHHHHHHTHHHHHGGGG-GGGCCCSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHChHHHHHHHHHHHH-HHHHhCCccccchHHHHHHHHHHHHHHHHH-HhheeccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999776555444 4566653      22 25678899999999 9988887654  44444444444555555555


Q ss_pred             HHHHHhc
Q 031495           73 TSSFLIR   79 (158)
Q Consensus        73 ~s~~l~g   79 (158)
                      ....+++
T Consensus       138 sgvvff~  144 (192)
T 3rlb_A          138 AGIIFWS  144 (192)
T ss_dssp             HHHHHCG
T ss_pred             HHHHHHH
Confidence            5455553

>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}

Probab=96.69  E-value=0.035  Score=42.30  Aligned_cols=56  Identities=18%  Similarity=0.195  Sum_probs=40.4

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHhhcCchHHHHH
Q 031495            2 RWGVAAGRKTMVATAMLLLVLSG--PVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIF   57 (158)
Q Consensus         2 R~g~k~~~~~~~va~lll~~l~G--p~~al~~~l~fG~lGv~lG~~~~~~~s~~~~~~   57 (158)
                      ..|.+.|.....+.+++-.++.|  |+..+.-.+..+..|+.-|+.|||++++...+.
T Consensus        57 ~~Gp~~g~~~~~l~~ll~~l~~g~~~~g~~~~~l~~~~~g~~~~~~y~k~~~~~~~~~  114 (189)
T 3p5n_A           57 TFGPVAGIIVALVKNLLNYLFSMGDPVGPFANFLAGASFLLTAYAIYKNKRSTKSLIT  114 (189)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHHHSSSCSHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            46889997776666666666543  666555566777888888999998887766543

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00