Citrus Sinensis ID: 031500

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MQSMKESAANVAASAKAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQEAREHNSAAKQATGGLGYTTADSYSHSTTGMHGRPTGGQQMSALAGHGTGQPAGQMTEGVVGSHPMGVNTGTGHNPAHNTRVGGGGGATGYGTGGSYN
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEccccccccccccccccccccccccccccccEccEEccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MQSMKESAANVAASAKAGMEKTKATAQEKVDkmkahdpvekEMATEKKEERRMQAELEKQEAREHNSAAkqatgglgyttadsyshsttgmhgrptggqqmsalaghgtgqpagqmtegvvgshpmgvntgtghnpahntrvgggggatgygtggsyn
Flexible Loop (DISEMBL)
MQSMKESAANVAasakagmektkATAQEkvdkmkahdpvekematekkEERRMQAELEKQearehnsaakqatgglgyTTADSYSHSTTGMHGRPTGGQQMSALAGHGTGQPAGQMTEGVVGSHPMGVNTGTGhnpahntrvgggggatgygtggsyn
Low Complexity Region (SEG)
MQSMKESaanvaasakaGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQEAREHNSAAKQATGGLGYTTADSYSHSTTGMHGRPTGGQQMSALAGHGTGQPAGQMTEGVVGSHPMGVNTGTGHNPAHNTRVgggggatgygtggSYN
Disordered region (IsUnstruct)
**************************************************************************************************************************************************************
Disordered Region (DISOPRED)
*******************************************************************************************************************M*EGVV*SHP*********************************
Disordered Region (DISEMBL)
**********************************************************************QATGGLGYTTADSYSHSTTGMHGRPTGGQQMSALAGHGTGQPAGQMTEGVVGSHPMGVNTGTGHNPAHNTRVGGGGGATGYGTGGSYN
Disordered Region (DISPRO)
****************************************KE*********RMQ***EKQE*REHNSAAKQAT****YTTADSYSHSTTGMHGRPTGGQQMSALAGHGTGQPAGQMTEGVVGSHPMGVNTGTGHNPAHNTRVGGGGGATGYGTGGSYN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQSMKESAANVAASAKAGMEKTKATAQEKVDKMKAHDPVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGGLGYTTADSYSHSTTGMHGRPTGGQQMSALAGHGTGQPAGQMTEGVVGSHPMGVNTGTGHNPAHNTRVGGGGGATGYGTGGSYN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	158	2.2.26 [Sep-21-2011]
Q01417	173	18 kDa seed maturation pr	no	no	0.981	0.895	0.557	3e-36
P09441	165	Late embryogenesis abunda	N/A	no	0.411	0.393	0.681	4e-17
P46515	104	11 kDa late embryogenesis	N/A	no	0.474	0.721	0.592	2e-15
Q00747	88	Protein LE25 OS=Solanum l	N/A	no	0.392	0.704	0.548	1e-09

>sp|Q01417|PM1_SOYBN 18 kDa seed maturation protein OS=Glycine max GN=GMPM1 PE=2 SV=1

 Score =  150 bits (380), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 92/165 (55%), Positives = 115/165 (69%), Gaps = 10/165 (6%)

Query: 2   QSMKESAANVAASAKAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQE 61
           +S+KE+A N+ ASAKAGMEKTKAT QEK ++M A DPV+KE+AT+KKE +  QAEL+KQ 
Sbjct: 9   ESIKETATNIGASAKAGMEKTKATVQEKAERMTARDPVQKELATQKKEAKMNQAELDKQA 68

Query: 62  AREHNSAAKQA---------TGGLGYTTADSYSHSTTGMHGRPTGGQQMSALAGHGTGQP 112
           AR+HN+AAKQ+               T   + ++STTG +G+P G  Q SA+ GHGTGQP
Sbjct: 69  ARQHNTAAKQSATTAGHMGHGHHTTGTGTGTATYSTTGEYGQPMGAHQTSAMPGHGTGQP 128

Query: 113 AGQMTEGVVGSHPMGVNTGTGHNP-AHNTRVGGGGGATGYGTGGS 156
            G +TEGVVGSHP+G N G G    AHNTR GG     GYGTGG+
Sbjct: 129 TGHVTEGVVGSHPIGTNRGPGGTATAHNTRAGGKPNDYGYGTGGT 173

Glycine max (taxid: 3847)

>sp|P09441|LEA13_GOSHI Late embryogenesis abundant protein D-113 OS=Gossypium hirsutum PE=2 SV=2

 Score = 87.0 bits (214), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/69 (68%), Positives = 54/69 (78%), Gaps = 4/69 (5%)

Query: 1  MQSMKESAANVAASAKAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQ 60
          MQSMK++AA    SAKAGMEK KA+ QEKVD+MK  DP EKEMA E+KEER+  AEL KQ
Sbjct: 1  MQSMKDAAA----SAKAGMEKAKASMQEKVDQMKTRDPNEKEMARERKEERQEDAELRKQ 56

Query: 61 EAREHNSAA 69
          EAR HN+ A
Sbjct: 57 EARHHNATA 65

LEA proteins are late embryonic proteins abundant in higher plant seed embryos. There are two subsets of LEA proteins (5a and 5b), the first ones are expressed when the cotyledon weight reach 80 mg and the second set are expressed above 100 mg. The function of those proteins is not known.

Gossypium hirsutum (taxid: 3635)

>sp|P46515|LEA11_HELAN 11 kDa late embryogenesis abundant protein OS=Helianthus annuus PE=2 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/81 (59%), Positives = 61/81 (75%), Gaps = 6/81 (7%)

Query: 18  GMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQEAREHNSAAKQATG-GL 76
           GMEKTKA+ QEK +KM AHDP++KEMA EKKEER+ +AE EKQ A+EHN+A KQ TG G 
Sbjct: 25  GMEKTKASLQEKGEKMTAHDPMQKEMAREKKEERKHEAEYEKQAAKEHNAAQKQTTGIGT 84

Query: 77  GYTTADSYSHSTTGMHGRPTG 97
           G     ++S++TT + G  TG
Sbjct: 85  G-----THSYTTTNVTGHRTG 100

LEA proteins are late embryonic proteins abundant in higher plant seed embryos. They may play an essential role in seed survival and in controlling water exchanges during seed desiccation and imbibition.

Helianthus annuus (taxid: 4232)

>sp|Q00747|LE25_SOLLC Protein LE25 OS=Solanum lycopersicum GN=LE25 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 48/62 (77%)

Query: 10 NVAASAKAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQEAREHNSAA 69
          + A++AKAGMEKTKA  QEK ++M   DP++KEMATEKKE+R   AE+ K++A+  ++A 
Sbjct: 6  DAASAAKAGMEKTKANVQEKAERMTTRDPLKKEMATEKKEDRVAAAEMGKRDAKAQHAAE 65

Query: 70 KQ 71
          KQ
Sbjct: 66 KQ 67

Solanum lycopersicum (taxid: 4081)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
11612197	170	seed maturation protein LEA 4 [Glycine t	0.993	0.923	0.611	5e-43
10334833	170	seed maturation protein [Glycine tomente	0.993	0.923	0.598	3e-42
11612181	170	seed maturation protein LEA 4 [Glycine t	0.993	0.923	0.598	5e-42
11612171	168	seed maturation protein LEA 4 [Glycine c	0.981	0.922	0.6	1e-41
10334840	168	seed maturation protein [Glycine tabacin	0.981	0.922	0.6	2e-41
11612177	168	seed maturation protein LEA 4 [Glycine t	0.981	0.922	0.6	3e-41
10334848	168	seed maturation protein [Glycine tomente	0.981	0.922	0.6	3e-41
10334842	168	seed maturation protein [Glycine tomente	0.981	0.922	0.6	1e-40
15667231	168	seed maturation protein LEA 4 [Glycine c	0.981	0.922	0.593	2e-40
9652352	168	seed maturation protein [Glycine tomente	0.981	0.922	0.593	3e-40

>gi|11612197|gb|AAG37451.1| seed maturation protein LEA 4 [Glycine tomentella]

 Score =  178 bits (452), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 99/162 (61%), Positives = 121/162 (74%), Gaps = 5/162 (3%)

Query: 2   QSMKESAANVAASAKAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQE 61
           +S+KE+AAN+ ASAKAGMEKTKAT QEK ++M A DP++KE+AT+KKE +  QAEL+KQ 
Sbjct: 9   ESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPMQKELATQKKEAKMSQAELDKQA 68

Query: 62  AREHNSAAKQATG----GLGYTTADSYSHSTTGMHGRPTGGQQMSALAGHGTGQPAGQMT 117
           AR+HN+AAKQA      G G+ T  + ++STTG HG+P G  Q SAL GHGTGQP G +T
Sbjct: 69  ARQHNTAAKQAATAGHMGQGHHTPGTATYSTTGEHGQPMGAHQTSALPGHGTGQPTGHVT 128

Query: 118 EGVVGSHPMGVNTGTGHNP-AHNTRVGGGGGATGYGTGGSYN 158
           EGVVGSHP+G N G G    AHNTR GG     GYGTGG+YN
Sbjct: 129 EGVVGSHPIGTNRGPGGTATAHNTRAGGNPNDYGYGTGGTYN 170

Source: Glycine tomentella

Species: Glycine tomentella

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10334833|gb|AAG15412.1| seed maturation protein [Glycine tomentella]

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 97/162 (59%), Positives = 121/162 (74%), Gaps = 5/162 (3%)

Query: 2   QSMKESAANVAASAKAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQE 61
           +S+KE+AAN+ ASAKAGMEKTKAT QEK ++M A DP++KE+AT+KK+ +  QAEL+KQ 
Sbjct: 9   ESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPMQKELATQKKDAKMSQAELDKQA 68

Query: 62  AREHNSAAKQATG----GLGYTTADSYSHSTTGMHGRPTGGQQMSALAGHGTGQPAGQMT 117
           AR+HN+AAKQA      G G+ T  + ++STTG HG+P G  Q SA+ GHGTGQP G +T
Sbjct: 69  ARQHNTAAKQAATAGHMGQGHHTPGTATYSTTGEHGQPMGAHQTSAMPGHGTGQPTGHVT 128

Query: 118 EGVVGSHPMGVNTGTGHNP-AHNTRVGGGGGATGYGTGGSYN 158
           EGVVGSHP+G N G G    AHNTR GG     GYGTGG+YN
Sbjct: 129 EGVVGSHPIGTNRGPGGTATAHNTRAGGNPNDYGYGTGGTYN 170

Source: Glycine tomentella

Species: Glycine tomentella

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11612181|gb|AAG37443.1| seed maturation protein LEA 4 [Glycine tomentella] gi|11612183|gb|AAG37444.1| seed maturation protein LEA 4 [Glycine tomentella]

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 97/162 (59%), Positives = 120/162 (74%), Gaps = 5/162 (3%)

Query: 2   QSMKESAANVAASAKAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQE 61
           +S+KE+AAN+ ASAKAGMEKTKAT QEK ++M A DP++KE+AT+KKE +  QAEL+KQ 
Sbjct: 9   ESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPMQKELATQKKEAKISQAELDKQA 68

Query: 62  AREHNSAAKQATG----GLGYTTADSYSHSTTGMHGRPTGGQQMSALAGHGTGQPAGQMT 117
           AR+HN+AAKQ       G G+ T  + ++STTG HG+P G  Q SA+ GHGTGQP G +T
Sbjct: 69  ARQHNTAAKQVATAGHMGQGHHTPGTATYSTTGEHGQPMGAHQTSAMPGHGTGQPMGHVT 128

Query: 118 EGVVGSHPMGVNTGTGHNP-AHNTRVGGGGGATGYGTGGSYN 158
           EGVVGSHP+G N G G    AHNTR GG     GYGTGG+YN
Sbjct: 129 EGVVGSHPIGTNRGPGGTATAHNTRAGGNPNDYGYGTGGTYN 170

Source: Glycine tomentella

Species: Glycine tomentella

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11612171|gb|AAG37438.1| seed maturation protein LEA 4 [Glycine canescens]

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 96/160 (60%), Positives = 119/160 (74%), Gaps = 5/160 (3%)

Query: 2   QSMKESAANVAASAKAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQE 61
           +S+KE+AAN+ ASAKAGMEKTKAT QEK ++M A DP++KE+AT+KKE +  QAEL+KQ 
Sbjct: 9   ESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPIQKELATQKKEAKMSQAELDKQA 68

Query: 62  AREHNSAAKQATG----GLGYTTADSYSHSTTGMHGRPTGGQQMSALAGHGTGQPAGQMT 117
           AR+HN+AAKQA      G G+ T  + ++STTG HG+P G  Q SA+ GHGTGQP G +T
Sbjct: 69  ARQHNTAAKQAATAGHMGQGHNTPGTATYSTTGEHGQPMGAHQTSAMPGHGTGQPMGHVT 128

Query: 118 EGVVGSHPMGVNTGTGHNP-AHNTRVGGGGGATGYGTGGS 156
           EGVVGSHP+G N G G    AHNTR GG     GYGTGG+
Sbjct: 129 EGVVGSHPIGTNRGPGGTATAHNTRAGGNPNDYGYGTGGT 168

Source: Glycine canescens

Species: Glycine canescens

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10334840|gb|AAG15415.1| seed maturation protein [Glycine tabacina]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/160 (60%), Positives = 120/160 (75%), Gaps = 5/160 (3%)

Query: 2   QSMKESAANVAASAKAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQE 61
           +S+KE+AAN+ ASAKAGMEKTKAT QEK ++M A DP++KE+AT+KKE +  QAEL+KQ 
Sbjct: 9   ESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPMQKELATQKKEAKMSQAELDKQA 68

Query: 62  AREHNSAAKQATG----GLGYTTADSYSHSTTGMHGRPTGGQQMSALAGHGTGQPAGQMT 117
           AR+HN+AAKQA      G G+ T ++ ++STTG HG+P G  Q SA+ GHGTGQP G +T
Sbjct: 69  ARQHNTAAKQAATAGHMGQGHHTPETATYSTTGEHGQPMGAHQTSAMPGHGTGQPTGHVT 128

Query: 118 EGVVGSHPMGVNTGTGHNP-AHNTRVGGGGGATGYGTGGS 156
           EGVVGSHP+G N G G    AHNTR GG     GYGTGG+
Sbjct: 129 EGVVGSHPIGTNRGPGGTATAHNTRAGGNPNDYGYGTGGT 168

Source: Glycine tabacina

Species: Glycine tabacina

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11612177|gb|AAG37441.1| seed maturation protein LEA 4 [Glycine tabacina]

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 96/160 (60%), Positives = 119/160 (74%), Gaps = 5/160 (3%)

Query: 2   QSMKESAANVAASAKAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQE 61
           +S+KE+AAN+ ASAKAGMEKTKAT QEK ++M A DP++KE+AT+KKE +  QAEL+KQ 
Sbjct: 9   ESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPMQKELATQKKEAKMSQAELDKQA 68

Query: 62  AREHNSAAKQATG----GLGYTTADSYSHSTTGMHGRPTGGQQMSALAGHGTGQPAGQMT 117
           AR+HN+AAKQA      G G+ T  + ++STTG HG+P G  Q SA+ GHGTGQP G +T
Sbjct: 69  ARQHNTAAKQAATAGHMGQGHNTPGTATYSTTGEHGQPMGAHQTSAMPGHGTGQPTGHVT 128

Query: 118 EGVVGSHPMGVNTGTGHNP-AHNTRVGGGGGATGYGTGGS 156
           EGVVGSHP+G N G G    AHNTR GG     GYGTGG+
Sbjct: 129 EGVVGSHPIGTNRGPGGTATAHNTRAGGNPNDYGYGTGGT 168

Source: Glycine tabacina

Species: Glycine tabacina

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10334848|gb|AAG15418.1| seed maturation protein [Glycine tomentella]

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 96/160 (60%), Positives = 119/160 (74%), Gaps = 5/160 (3%)

Query: 2   QSMKESAANVAASAKAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQE 61
           +S+KE+AAN+ ASAKAGMEKTKAT QEK ++M A DPV++E+AT+KKE +  QAEL+KQ 
Sbjct: 9   ESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPVQRELATQKKEAKISQAELDKQA 68

Query: 62  AREHNSAAKQATG----GLGYTTADSYSHSTTGMHGRPTGGQQMSALAGHGTGQPAGQMT 117
           AR+HN+AAKQA      G G+ T  + ++STTG HG+P G  Q SA+ GHGTGQP G +T
Sbjct: 69  ARQHNTAAKQAATAGHMGQGHHTPGTATYSTTGEHGQPMGAHQTSAMPGHGTGQPTGHVT 128

Query: 118 EGVVGSHPMGVNTGTGHNP-AHNTRVGGGGGATGYGTGGS 156
           EGVVGSHP+G N G G    AHNTR GG     GYGTGG+
Sbjct: 129 EGVVGSHPIGTNRGPGGTATAHNTRAGGNPNDYGYGTGGT 168

Source: Glycine tomentella

Species: Glycine tomentella

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10334842|gb|AAG15416.1| seed maturation protein [Glycine tomentella]

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 96/160 (60%), Positives = 118/160 (73%), Gaps = 5/160 (3%)

Query: 2   QSMKESAANVAASAKAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQE 61
           +S+KE+AAN+ ASAKAGMEKTKAT QEK ++M A DP++KE+AT+KKE +  QAEL+KQ 
Sbjct: 9   ESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPMQKELATQKKEAKISQAELDKQA 68

Query: 62  AREHNSAAKQATG----GLGYTTADSYSHSTTGMHGRPTGGQQMSALAGHGTGQPAGQMT 117
           AR HN+AAKQA      G G+ T  + ++STTG HG+P G  Q SA+ GHGTGQP G +T
Sbjct: 69  ARRHNTAAKQAATAGHMGQGHHTPGTATYSTTGEHGQPMGAHQTSAMPGHGTGQPMGHVT 128

Query: 118 EGVVGSHPMGVNTGTGHNP-AHNTRVGGGGGATGYGTGGS 156
           EGVVGSHP+G N G G    AHNTR GG     GYGTGG+
Sbjct: 129 EGVVGSHPIGTNRGPGGTATAHNTRAGGNPNDYGYGTGGT 168

Source: Glycine tomentella

Species: Glycine tomentella

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15667231|gb|AAL02402.1| seed maturation protein LEA 4 [Glycine canescens]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 95/160 (59%), Positives = 119/160 (74%), Gaps = 5/160 (3%)

Query: 2   QSMKESAANVAASAKAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQE 61
           +S+KE+AAN+ ASAKAGMEKTKAT QEK ++M A DP++KE+AT+KK+ +  QAEL+KQ 
Sbjct: 9   ESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPMQKELATQKKDAKMSQAELDKQA 68

Query: 62  AREHNSAAKQATG----GLGYTTADSYSHSTTGMHGRPTGGQQMSALAGHGTGQPAGQMT 117
           AR+HN+AAKQA      G G+ T  + ++STTG HG+P G  Q SA+ GHGTGQP G +T
Sbjct: 69  ARQHNTAAKQAATAGHMGQGHHTPGTATYSTTGEHGQPMGAHQTSAMPGHGTGQPMGHVT 128

Query: 118 EGVVGSHPMGVNTGTGHNP-AHNTRVGGGGGATGYGTGGS 156
           EGVVGSHP+G N G G    AHNTR GG     GYGTGG+
Sbjct: 129 EGVVGSHPIGTNRGPGGTATAHNTRAGGNPNDYGYGTGGT 168

Source: Glycine canescens

Species: Glycine canescens

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9652352|gb|AAF91486.1|AF287476_1 seed maturation protein [Glycine tomentella] gi|11612185|gb|AAG37445.1| seed maturation protein LEA 4 [Glycine tomentella] gi|11612187|gb|AAG37446.1| seed maturation protein LEA 4 [Glycine tomentella]

 Score =  169 bits (428), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 95/160 (59%), Positives = 118/160 (73%), Gaps = 5/160 (3%)

Query: 2   QSMKESAANVAASAKAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQE 61
           +S+KE+AAN+ ASAKAGMEKTKAT QEK ++M A DP++KE+AT+KKE +  QAEL+KQ 
Sbjct: 9   ESIKETAANIGASAKAGMEKTKATVQEKAERMTARDPMQKELATQKKEAKISQAELDKQA 68

Query: 62  AREHNSAAKQATG----GLGYTTADSYSHSTTGMHGRPTGGQQMSALAGHGTGQPAGQMT 117
           AR+HN+AAKQA      G G+ T  + ++STTG HG+P G  Q SA+ GHGTGQP G +T
Sbjct: 69  ARQHNTAAKQAATAGHMGQGHHTPGTATYSTTGEHGQPMGAHQTSAMPGHGTGQPMGHVT 128

Query: 118 EGVVGSHPMGVNTGTGHNP-AHNTRVGGGGGATGYGTGGS 156
           EGVVGSHP+G N   G    AHNTR GG     GYGTGG+
Sbjct: 129 EGVVGSHPIGTNRSPGGTATAHNTRAGGNPNDYGYGTGGT 168

Source: Glycine tomentella

Species: Glycine tomentella

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	158
TAIR|locus:2170239	158	LEA4-5 "AT5G06760" [Arabidopsi	0.879	0.879	0.531	1.3e-34
TAIR|locus:2159436	201	PDCB1 "plasmodesmata callose-b	0.430	0.338	0.408	9.6e-06

TAIR|locus:2170239 LEA4-5 "AT5G06760" [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 77/145 (53%), Positives = 97/145 (66%)

Query:     1 MQSMKESXXXXXXXXXXGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQ 60
             MQSMKE+          GM+KTKAT +EK +KMK  DPV+K+MAT+ KE++  QAE++K+
Sbjct:     1 MQSMKETASNIAASAKSGMDKTKATLEEKAEKMKTRDPVQKQMATQVKEDKINQAEMQKR 60

Query:    61 EAREHNSAAKQATG---GLGYTTADSYSHSTTGMHGRPTGGQQMSALAGHGTGQPAGQMT 117
             E R+HN+A K+A G   GLG  TA   +HSTTG  G  TG  QMSAL GHGTGQ   ++ 
Sbjct:    61 ETRQHNAAMKEAAGAGTGLGLGTA---THSTTGQVGHGTGTHQMSALPGHGTGQLTDRVV 117

Query:   118 EGVVGSHPMGVNTGTGHNPAHNTRV 142
             EG   + P+G NTGTG   AHNT V
Sbjct:   118 EGTAVTDPIGRNTGTGRTTAHNTHV 142

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009790 "embryo development" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=ISS

GO:0009409 "response to cold" evidence=IDA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2159436 PDCB1 "plasmodesmata callose-binding protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 9.6e-06, P = 9.6e-06
 Identities = 29/71 (40%), Positives = 34/71 (47%)

Query:    73 TGGLGYTTADSYSHSTTGMHG--RPTGGQQMSALAGHGTGQP-AGQMTEGVVGSHPMGVN 129
             TG    T+A   S STT   G   P G    + L G GT  P +G  T GV G +  G  
Sbjct:   100 TGCAFPTSASGSSGSTTVTPGTTNPKGSPTTTTLPGSGTNSPYSGNPTNGVFGGNSTGGT 159

Query:   130 TGTGHNPAHNT 140
             TGTG NP + T
Sbjct:   160 TGTGINPDYTT 170


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.303   0.119   0.328    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      158       135   0.00091  102 3  11 23  0.41    32
                                                     30  0.44    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  468 (50 KB)
  Total size of DFA:  104 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.14u 0.22s 22.36t   Elapsed:  00:00:01
  Total cpu time:  22.14u 0.22s 22.36t   Elapsed:  00:00:01
  Start:  Sat May 11 04:27:10 2013   End:  Sat May 11 04:27:11 2013

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0001872 "(1->3)-beta-D-glucan binding" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0030247 "polysaccharide binding" evidence=IDA

GO:0052543 "callose deposition in cell wall" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009069 "serine family amino acid metabolic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	158
pfam03760	73	pfam03760, LEA_1, Late embryogenesis abundant (LEA	1e-14

>gnl|CDD|146413 pfam03760, LEA_1, Late embryogenesis abundant (LEA) group 1

 Score = 64.2 bits (156), Expect = 1e-14
 Identities = 33/73 (45%), Positives = 51/73 (69%)

Query: 1  MQSMKESAANVAASAKAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQ 60
          MQS KE A+N+A++AK  M+KTKA A EK +K  A   VEKE+A ++K+ +  QA+++  
Sbjct: 1  MQSAKEKASNMASTAKEKMDKTKAKADEKAEKATARTKVEKEIAHQRKKAKEAQAKMDLH 60

Query: 61 EAREHNSAAKQAT 73
          EA+ H++A K + 
Sbjct: 61 EAKAHHAAEKLSA 73

Family members are conserved along the entire coding region, especially within the hydrophobic internal 20 amino acid motif, which may be repeated. Length = 73

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	158
PF03760	73	LEA_1: Late embryogenesis abundant (LEA) group 1 ;	99.95
PF07946	321	DUF1682: Protein of unknown function (DUF1682); In	80.3

>PF03760 LEA_1: Late embryogenesis abundant (LEA) group 1 ; InterPro: IPR005513 LEA proteins are late embryonic proteins abundant in higher plant seed embryos

Probab=99.95  E-value=2.5e-28  Score=174.96  Aligned_cols=73  Identities=60%  Similarity=0.732  Sum_probs=71.6

Q ss_pred             ChhHHHHHHhHHHhHhhhhhhhhHhHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhc
Q 031500            1 MQSMKESAANVAASAKAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQEAREHNSAAKQAT   73 (158)
Q Consensus         1 Mqs~KEkaan~aASAKag~ektKA~aqEKaEKatAr~~~eKe~A~erk~ak~aqAe~~kh~aka~nAA~k~~a   73 (158)
                      ||++||+++||+||||++|+|+||++|||+||+|||||.||+||+||+++|++||||+||++|++|+++++.+
T Consensus         1 Mqa~Kek~~n~~asAka~~~k~kA~aqEKaeK~tA~~~~eKe~A~erk~ak~a~Ae~~~h~aka~~aa~k~~a   73 (73)
T PF03760_consen    1 MQAAKEKAANAAASAKAKMEKTKAKAQEKAEKATARDPEEKEMAHERKEAKEAQAEMDKHQAKAENAAEKEAA   73 (73)
T ss_pred             ChhHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999863

They may play an essential role in seed survival and control of water exchanges during seed desiccation and imbibition. Family members are conserved along the entire coding region, especially within the hydrophobic internal 20 amino acid motif. This motif may be repeated.; GO: 0009790 embryo development

>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function

Probab=80.30  E-value=6  Score=34.36  Aligned_cols=42  Identities=31%  Similarity=0.365  Sum_probs=26.2

Q ss_pred             HhHhhhhhhhhHhHhhhhhhhccCChhHHHHHHHHHHHHHHHHH
Q 031500           13 ASAKAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAE   56 (158)
Q Consensus        13 ASAKag~ektKA~aqEKaEKatAr~~~eKe~A~erk~ak~aqAe   56 (158)
                      .-++.++++++..+.++..|...  ..+.|++.+||++++.+.+
T Consensus       254 ~e~~~K~~k~R~~~~~~~~K~~~--~~r~E~~~~~k~e~kr~e~  295 (321)
T PF07946_consen  254 PEAKKKAKKNREEEEEKILKEAH--QERQEEAQEKKEEKKREER  295 (321)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence            34677888899988888888753  2333444455544444433

One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00