Citrus Sinensis ID: 031533

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
MDLRSLAGLDSPFFSILEDVLELPEEQEKTRNNPSRAYVRDAKAMAATPADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKISALCQDGVLTVTVEKVPPPQPKTIQVQVA
ccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEcccEEEEEEEccccccccEEEEEEEccEEEEEEEEccccccccccccccEEEEEEcccEEEEEEEccccccccccEEEEcccEEEEEEcccccccccEEEEEcc
cccccccccccccccccHHHccccccccccccccccccccHHHHHHccccccccccccEEEEEEccccccccEEEEEEcccEEEEEccccccccccccccccEEEEEEEccccEEEEEEccccccHHHEEEEEcccEEEEEccccccccccEEEEEEc
mdlrslagldspffSILEDVlelpeeqektrnnpsrayvrdakamaatpadvmeypnsyvfivdmpgikaSEIKVQVESENVlvvsgerkrdpkekdnkdgVKYVRMERRFGKFMrkfvlpdnanvDKISALCQDgvltvtvekvpppqpktiqvqva
mdlrslagldspffsILEDVLelpeeqektrnnpsrayvrDAKAMAatpadvmeyPNSYVFIVDMPGIKASEIkvqvesenvlvvsgerkrdpkekdnkdgvkyvrMERRFGKFMRKFVLPDNANVDKISALCQDGVLTVtvekvpppqpktiqvqva
MDLRSLAGLDSPFFSILEDVLELPEEQEKTRNNPSRAYVRDAKAMAATPADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKISALCQDGVLTVTVEKVPPPQPKTIQVQVA
************FFSILEDV***************************TPADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLV*****************VKYVRMERRFGKFMRKFVLPDNANVDKISALCQDGVLTVTV****************
*******GLDSPFFSILEDVLELPEEQEKTRNNP****VRDAKAMAATPADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLV*******************YVRMERRFGKFMRKFVLPDNANVDKISALCQDGVLTVTVE*********IQVQV*
MDLRSLAGLDSPFFSILEDVLELP**********SRAYVRDAKAMAATPADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVS*************DGVKYVRMERRFGKFMRKFVLPDNANVDKISALCQDGVLTVTVEKVPPPQPKTIQVQVA
******AG**SPFFSILEDVLELPEE*************R*AK**AATPADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGER**********DGVKYVRMERRFGKFMRKFVLPDNANVDKISALCQDGVLTVTVEKVPPPQPKTIQVQVA
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDLRSLAGLDSPFFSILEDVLELPEEQEKTRNNPSRAYVRDAKAMAATPADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKISALCQDGVLTVTVEKVPPPQPKTIQVQVA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query158 2.2.26 [Sep-21-2011]
P29830155 17.6 kDa class II heat sh yes no 0.911 0.929 0.710 1e-52
O81822156 17.7 kDa class II heat sh no no 0.911 0.923 0.721 1e-52
P05477159 17.9 kDa class II heat sh no no 0.968 0.962 0.597 3e-48
Q01545167 18.8 kDa class II heat sh N/A no 0.886 0.838 0.64 1e-46
P46516160 17.9 kDa class II heat sh N/A no 0.968 0.956 0.630 2e-46
Q01544155 17.2 kDa class II heat sh N/A no 0.962 0.980 0.608 6e-45
P19242152 17.1 kDa class II heat sh N/A no 0.924 0.960 0.629 9e-42
Q5VRY1166 18.0 kDa class II heat sh yes no 0.974 0.927 0.564 5e-41
O82013155 17.3 kDa class II heat sh N/A no 0.962 0.980 0.602 5e-41
P24632164 17.8 kDa class II heat sh N/A no 0.930 0.896 0.543 5e-38
>sp|P29830|HS176_ARATH 17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1 Back     alignment and function desciption
 Score =  205 bits (521), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 108/152 (71%), Positives = 127/152 (83%), Gaps = 8/152 (5%)

Query: 12  PFFSILEDVLELPEEQ--EKTRNNPSRAYVRDAKAMAATPADVMEYPNSYVFIVDMPGIK 69
           P  SILED+LE+PE+   EKTRNNPSR Y+RDAKAMAATPADV+E+PN+Y F+VDMPGIK
Sbjct: 7   PIISILEDMLEVPEDHNNEKTRNNPSRVYMRDAKAMAATPADVIEHPNAYAFVVDMPGIK 66

Query: 70  ASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKI 129
             EIKVQVE++NVLVVSGER+R+ KE    +GVKYVRMERR GKFMRKF LP+NA++DKI
Sbjct: 67  GDEIKVQVENDNVLVVSGERQRENKE---NEGVKYVRMERRMGKFMRKFQLPENADLDKI 123

Query: 130 SALCQDGVLTVTVE---KVPPPQPKTIQVQVA 158
           SA+C DGVL VTV+      P +PKTIQVQVA
Sbjct: 124 SAVCHDGVLKVTVQKLPPPEPKKPKTIQVQVA 155

Arabidopsis thaliana (taxid: 3702)
>sp|O81822|HS177_ARATH 17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1 Back     alignment and function description
>sp|P05477|HSP21_SOYBN 17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1 Back     alignment and function description
>sp|Q01545|HSP22_IPONI 18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1 Back     alignment and function description
>sp|P46516|HSP21_HELAN 17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1 Back     alignment and function description
>sp|Q01544|HSP21_IPONI 17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1 Back     alignment and function description
>sp|P19242|HSP21_PEA 17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1 Back     alignment and function description
>sp|Q5VRY1|HSP18_ORYSJ 18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1 Back     alignment and function description
>sp|O82013|HSP21_SOLPE 17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1 Back     alignment and function description
>sp|P24632|HSP22_MAIZE 17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query158
343887298158 heat shock protein [Citrus unshiu] 1.0 1.0 0.962 2e-82
255550115159 heat-shock protein, putative [Ricinus co 0.886 0.880 0.809 3e-59
297811325154 AT-HSP17.6A [Arabidopsis lyrata subsp. l 0.911 0.935 0.728 3e-52
984044156 17.6 kD HSP [Arabidopsis thaliana] 0.873 0.884 0.718 6e-51
15239846155 heat shock protein 17.6-II [Arabidopsis 0.911 0.929 0.710 7e-51
297811323154 17.6 kDa class II heat shock protein [Ar 0.911 0.935 0.715 7e-51
15239849156 heat shock protein 17.6A [Arabidopsis th 0.911 0.923 0.721 7e-51
157849708154 17.6 kDa class II heat shock protein [Br 0.911 0.935 0.721 9e-51
376341422161 small heat shock protein [Musa acuminata 0.993 0.975 0.654 4e-50
5257560156 cytosolic class II low molecular weight 0.968 0.980 0.658 1e-49
>gi|343887298|dbj|BAK61844.1| heat shock protein [Citrus unshiu] Back     alignment and taxonomy information
 Score =  309 bits (792), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 152/158 (96%), Positives = 155/158 (98%)

Query: 1   MDLRSLAGLDSPFFSILEDVLELPEEQEKTRNNPSRAYVRDAKAMAATPADVMEYPNSYV 60
           MDLRSLAG DSPFFSILEDVLELPEEQE TRNNPSRAYVRDAKAMAATPADV+EYPNSYV
Sbjct: 1   MDLRSLAGFDSPFFSILEDVLELPEEQENTRNNPSRAYVRDAKAMAATPADVVEYPNSYV 60

Query: 61  FIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVL 120
           F+VDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVL
Sbjct: 61  FVVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVL 120

Query: 121 PDNANVDKISALCQDGVLTVTVEKVPPPQPKTIQVQVA 158
           PDNANV+KISALCQDGVL VTVEKVPPPQPKTIQVQVA
Sbjct: 121 PDNANVEKISALCQDGVLIVTVEKVPPPQPKTIQVQVA 158

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255550115|ref|XP_002516108.1| heat-shock protein, putative [Ricinus communis] gi|223544594|gb|EEF46110.1| heat-shock protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297811325|ref|XP_002873546.1| AT-HSP17.6A [Arabidopsis lyrata subsp. lyrata] gi|297319383|gb|EFH49805.1| AT-HSP17.6A [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|984044|emb|CAA61675.1| 17.6 kD HSP [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15239846|ref|NP_196763.1| heat shock protein 17.6-II [Arabidopsis thaliana] gi|232274|sp|P29830.1|HS176_ARATH RecName: Full=17.6 kDa class II heat shock protein; AltName: Full=17.6 kDa heat shock protein; Short=AtHsp17.6 gi|16338|emb|CAA45039.1| heat shock protein 17.6-II [Arabidopsis thaliana] gi|7573369|emb|CAB87675.1| heat shock protein 17.6-II [Arabidopsis thaliana] gi|21592360|gb|AAM64311.1| heat shock protein 17.6-II [Arabidopsis thaliana] gi|332004368|gb|AED91751.1| heat shock protein 17.6-II [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297811323|ref|XP_002873545.1| 17.6 kDa class II heat shock protein [Arabidopsis lyrata subsp. lyrata] gi|297319382|gb|EFH49804.1| 17.6 kDa class II heat shock protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15239849|ref|NP_196764.1| heat shock protein 17.6A [Arabidopsis thaliana] gi|75279004|sp|O81822.1|HS177_ARATH RecName: Full=17.7 kDa class II heat shock protein; AltName: Full=17.7 kDa heat shock protein; Short=AtHsp17.7 gi|3256075|emb|CAA74399.1| Heat Shock Protein 17.6A [Arabidopsis thaliana] gi|7573370|emb|CAB87676.1| heat shock protein 17.6A [Arabidopsis thaliana] gi|28393558|gb|AAO42199.1| putative heat shock protein 17.6A [Arabidopsis thaliana] gi|29824229|gb|AAP04075.1| putative heat shock protein 17.6A [Arabidopsis thaliana] gi|332004369|gb|AED91752.1| heat shock protein 17.6A [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|157849708|gb|ABV89637.1| 17.6 kDa class II heat shock protein [Brassica rapa] Back     alignment and taxonomy information
>gi|376341422|gb|AFB35144.1| small heat shock protein [Musa acuminata AAA Group] Back     alignment and taxonomy information
>gi|5257560|gb|AAD41409.1|AF159562_1 cytosolic class II low molecular weight heat shock protein [Prunus dulcis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query158
TAIR|locus:2143024156 HSP17.6A "heat shock protein 1 0.911 0.923 0.741 4.3e-54
TAIR|locus:2143109155 HSP17.6II "17.6 kDa class II h 0.911 0.929 0.730 5.5e-54
UNIPROTKB|Q5VRY1166 HSP18.0 "18.0 kDa class II hea 0.974 0.927 0.588 9.8e-48
TAIR|locus:2014410155 AT1G54050 "AT1G54050" [Arabido 0.886 0.903 0.411 2.6e-24
UNIPROTKB|Q943E7149 HSP16.9C "16.9 kDa class I hea 0.708 0.751 0.491 4.8e-23
TAIR|locus:2174269161 HSP18.2 "heat shock protein 18 0.892 0.875 0.416 2.6e-22
UNIPROTKB|P27777150 HSP16.9A "16.9 kDa class I hea 0.702 0.74 0.487 3.4e-22
UNIPROTKB|Q943E6150 HSP16.9B "16.9 kDa class I hea 0.702 0.74 0.487 3.4e-22
UNIPROTKB|Q6K7E9172 HSP18.6 "18.6 kDa class III he 0.664 0.610 0.466 1.1e-21
TAIR|locus:2024862157 AT1G53540 [Arabidopsis thalian 0.873 0.878 0.386 2.4e-21
TAIR|locus:2143024 HSP17.6A "heat shock protein 17.6A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 112/151 (74%), Positives = 131/151 (86%)

Query:    12 PFFSILEDVLELPEEQ-EKTRNNPSRAYVRDAKAMAATPADVMEYPNSYVFIVDMPGIKA 70
             P FSILED+LE PEEQ EKTRNNPSRAY+RDAKAMAATPADV+E+P++YVF VDMPGIK 
Sbjct:     9 PIFSILEDMLEAPEEQTEKTRNNPSRAYMRDAKAMAATPADVIEHPDAYVFAVDMPGIKG 68

Query:    71 SEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKIS 130
              EI+VQ+E+ENVLVVSG+R+RD KE +   GVK+VRMERR GKFMRKF LPDNA+++KIS
Sbjct:    69 DEIQVQIENENVLVVSGKRQRDNKENE---GVKFVRMERRMGKFMRKFQLPDNADLEKIS 125

Query:   131 ALCQDGVLTVTVEKVPPPQPK---TIQVQVA 158
             A C DGVL VT+ K+PPP+PK   TIQVQVA
Sbjct:   126 AACNDGVLKVTIPKLPPPEPKKPKTIQVQVA 156
GO:0005737 "cytoplasm" evidence=ISM
GO:0005829 "cytosol" evidence=TAS
GO:0006457 "protein folding" evidence=RCA;IDA
GO:0006972 "hyperosmotic response" evidence=IMP
GO:0051082 "unfolded protein binding" evidence=IDA
GO:0009408 "response to heat" evidence=IEP;RCA
GO:0009644 "response to high light intensity" evidence=IEP;RCA
GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA
GO:0010286 "heat acclimation" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
TAIR|locus:2143109 HSP17.6II "17.6 kDa class II heat shock protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5VRY1 HSP18.0 "18.0 kDa class II heat shock protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2014410 AT1G54050 "AT1G54050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q943E7 HSP16.9C "16.9 kDa class I heat shock protein 3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2174269 HSP18.2 "heat shock protein 18.2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P27777 HSP16.9A "16.9 kDa class I heat shock protein 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q943E6 HSP16.9B "16.9 kDa class I heat shock protein 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q6K7E9 HSP18.6 "18.6 kDa class III heat shock protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2024862 AT1G53540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q08275HSP23_MAIZENo assigned EC number0.54650.95560.9805N/Ano
P46516HSP21_HELANNo assigned EC number0.63030.96830.9562N/Ano
P19242HSP21_PEANo assigned EC number0.62980.92400.9605N/Ano
O82013HSP21_SOLPENo assigned EC number0.60240.96200.9806N/Ano
P29830HS176_ARATHNo assigned EC number0.71050.91130.9290yesno
P24632HSP22_MAIZENo assigned EC number0.54320.93030.8963N/Ano
P24631HSP21_MAIZENo assigned EC number0.55400.86070.8447N/Ano
Q01545HSP22_IPONINo assigned EC number0.640.88600.8383N/Ano
Q01544HSP21_IPONINo assigned EC number0.60860.96200.9806N/Ano
O81822HS177_ARATHNo assigned EC number0.72180.91130.9230nono
Q5VRY1HSP18_ORYSJNo assigned EC number0.56440.97460.9277yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query158
pfam00011101 pfam00011, HSP20, Hsp20/alpha crystallin family 2e-34
cd0646488 cd06464, ACD_sHsps-like, Alpha-crystallin domain ( 9e-29
cd0647292 cd06472, ACD_ScHsp26_like, Alpha crystallin domain 2e-27
COG0071146 COG0071, IbpA, Molecular chaperone (small heat sho 3e-24
cd0647193 cd06471, ACD_LpsHSP_like, Group of bacterial prote 1e-19
cd0029880 cd00298, ACD_sHsps_p23-like, This domain family in 3e-18
cd0652683 cd06526, metazoan_ACD, Alpha-crystallin domain (AC 4e-09
cd0647090 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain 6e-07
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family Back     alignment and domain information 
 Score =  116 bits (292), Expect = 2e-34
 Identities = 46/108 (42%), Positives = 66/108 (61%), Gaps = 9/108 (8%)

Query: 51  DVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERR 110
           D+ E  +++V  +D+PG K  E+KV+VE   VLV     K        ++    +R ER 
Sbjct: 1   DIKEDKDAFVVKLDVPGFKPEELKVKVEDNRVLVKGKHEKE-------EEDDHGLRSERS 53

Query: 111 FGKFMRKFVLPDNANVDKISALCQDGVLTVTVEKVPPP--QPKTIQVQ 156
           +  F RKFVLP+NA+ DK+ A  +DGVLTVTV K+ PP  +P+ IQ+Q
Sbjct: 54  YRSFSRKFVLPENADPDKVKASLKDGVLTVTVPKLEPPEKKPRRIQIQ 101

Length = 101
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 158
PRK11597142 heat shock chaperone IbpB; Provisional 99.96
COG0071146 IbpA Molecular chaperone (small heat shock protein 99.96
PRK10743137 heat shock protein IbpA; Provisional 99.96
cd0647292 ACD_ScHsp26_like Alpha crystallin domain (ACD) fou 99.94
cd0647193 ACD_LpsHSP_like Group of bacterial proteins contai 99.93
PF00011102 HSP20: Hsp20/alpha crystallin family This prints e 99.92
cd0647090 ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun 99.92
cd0649786 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai 99.9
cd0647883 ACD_HspB4-5-6 Alpha-crystallin domain found in alp 99.89
cd0649884 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai 99.89
cd0647981 ACD_HspB7_like Alpha crystallin domain (ACD) found 99.88
cd0647683 ACD_HspB2_like Alpha crystallin domain (ACD) found 99.87
cd0647586 ACD_HspB1_like Alpha crystallin domain (ACD) found 99.87
cd0648187 ACD_HspB9_like Alpha crystallin domain (ACD) found 99.86
cd0646488 ACD_sHsps-like Alpha-crystallin domain (ACD) of al 99.86
cd0647783 ACD_HspB3_Like Alpha crystallin domain (ACD) found 99.85
cd0648287 ACD_HspB10 Alpha crystallin domain (ACD) found in 99.84
cd0652683 metazoan_ACD Alpha-crystallin domain (ACD) of meta 99.84
KOG0710196 consensus Molecular chaperone (small heat-shock pr 99.77
cd0648091 ACD_HspB8_like Alpha-crystallin domain (ACD) found 99.76
KOG3591173 consensus Alpha crystallins [Posttranslational mod 99.72
cd0029880 ACD_sHsps_p23-like This domain family includes the 99.58
cd0646978 p23_DYX1C1_like p23_like domain found in proteins 99.37
PF05455177 GvpH: GvpH; InterPro: IPR008633 This family consis 99.13
cd0646384 p23_like Proteins containing this p23_like domain 99.11
cd0646684 p23_CS_SGT1_like p23_like domain similar to the C- 98.9
PF0496979 CS: CS domain; InterPro: IPR017447 The function of 98.65
cd06465108 p23_hB-ind1_like p23_like domain found in human (h 98.37
PF08190328 PIH1: pre-RNA processing PIH1/Nop17 98.23
cd0648984 p23_CS_hSgt1_like p23_like domain similar to the C 98.2
cd0646785 p23_NUDC_like p23_like domain of NUD (nuclear dist 98.06
cd0648887 p23_melusin_like p23_like domain similar to the C- 97.99
cd0646892 p23_CacyBP p23_like domain found in proteins simil 97.98
cd0649385 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear 97.88
cd00237106 p23 p23 binds heat shock protein (Hsp)90 and parti 97.49
cd0649493 p23_NUDCD2_like p23-like NUD (nuclear distribution 97.28
PLN03088 356 SGT1, suppressor of G2 allele of SKP1; Provisional 97.15
KOG1309 196 consensus Suppressor of G2 allele of skp1 [Signal 97.1
cd0649087 p23_NCB5OR p23_like domain found in NAD(P)H cytoch 96.89
cd0649287 p23_mNUDC_like p23-like NUD (nuclear distribution) 96.57
cd06495102 p23_NUDCD3_like p23-like NUD (nuclear distribution 96.34
PF14913194 DPCD: DPCD protein family 91.1
KOG1667320 consensus Zn2+-binding protein Melusin/RAR1, conta 89.03
KOG3158180 consensus HSP90 co-chaperone p23 [Posttranslationa 88.99
PF13349166 DUF4097: Domain of unknown function (DUF4097) 88.36
COG5091368 SGT1 Suppressor of G2 allele of skp1 and related p 86.21
KOG2265179 consensus Nuclear distribution protein NUDC [Signa 83.07
cd0648287 ACD_HspB10 Alpha crystallin domain (ACD) found in 82.45
>PRK11597 heat shock chaperone IbpB; Provisional Back     alignment and domain information 
Probab=99.96  E-value=5.2e-29  Score=179.62  Aligned_cols=102  Identities=21%  Similarity=0.381  Sum_probs=90.4

Q ss_pred             CCCCeeEEE-eCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCCCc
Q 031533           46 AATPADVME-YPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNA  124 (158)
Q Consensus        46 ~~p~~~i~e-~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~v  124 (158)
                      ..|++||.| ++++|+|.++|||+++++|+|.++ ++.|+|+|++....      ++..|+++|+.+|+|.|+|.||++|
T Consensus        31 ~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~-~~~LtI~ge~~~~~------~~~~~~~~Er~~g~F~R~f~LP~~v  103 (142)
T PRK11597         31 SFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLE-GTRLTVKGTPEQPE------KEVKWLHQGLVNQPFSLSFTLAENM  103 (142)
T ss_pred             CCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEE-CCEEEEEEEEcccc------CCCcEEEEEEeCcEEEEEEECCCCc
Confidence            459999998 477999999999999999999999 58999999976322      5678999999999999999999999


Q ss_pred             ccCCeEEEEeCcEEEEEEecC--CCCCCeeEEEe
Q 031533          125 NVDKISALCQDGVLTVTVEKV--PPPQPKTIQVQ  156 (158)
Q Consensus       125 d~~~i~A~~~~GiL~I~lpK~--~~~~~~~i~I~  156 (158)
                      |.+  +|.|+||||+|+|||.  +..++++|+|+
T Consensus       104 d~~--~A~~~nGVL~I~lPK~~~~~~~~rkI~I~  135 (142)
T PRK11597        104 EVS--GATFVNGLLHIDLIRNEPEAIAPQRIAIS  135 (142)
T ss_pred             ccC--cCEEcCCEEEEEEeccCccccCCcEEEEC
Confidence            998  7999999999999997  44566999886

>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10743 heat shock protein IbpA; Provisional Back     alignment and domain information
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry Back     alignment and domain information
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa) Back     alignment and domain information
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20 Back     alignment and domain information
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa) Back     alignment and domain information
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins Back     alignment and domain information
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins Back     alignment and domain information
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins Back     alignment and domain information
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins Back     alignment and domain information
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins Back     alignment and domain information
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins Back     alignment and domain information
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21 Back     alignment and domain information
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1 Back     alignment and domain information
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [] Back     alignment and domain information
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1 Back     alignment and domain information
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1) Back     alignment and domain information
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown Back     alignment and domain information
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins Back     alignment and domain information
>PF08190 PIH1: pre-RNA processing PIH1/Nop17 Back     alignment and domain information
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins Back     alignment and domain information
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins Back     alignment and domain information
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins Back     alignment and domain information
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP) Back     alignment and domain information
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins Back     alignment and domain information
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor Back     alignment and domain information
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms] Back     alignment and domain information
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins Back     alignment and domain information
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins Back     alignment and domain information
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins Back     alignment and domain information
>PF14913 DPCD: DPCD protein family Back     alignment and domain information
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only] Back     alignment and domain information
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13349 DUF4097: Domain of unknown function (DUF4097) Back     alignment and domain information
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only] Back     alignment and domain information
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms] Back     alignment and domain information
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query158
1gme_A151 Crystal Structure And Assembly Of An Eukaryotic Sma 1e-15
3gla_A100 Crystal Structure Of The Hspa From Xanthomonas Axon 6e-15
3gt6_A103 Crystal Structure Of The Hspa From Xanthomonas Axon 8e-15
2byu_A101 Negative Stain Em Reconstruction Of M.Tuberculosis 7e-14
2h50_A93 Multiple Distinct Assemblies Reveal Conformational 9e-14
3vqk_A123 Small Heat Shock Protein Hsp14.0 Of Wild Type Lengt 2e-04
3vql_A115 Small Heat Shock Protein Hsp14.0 Of C-Terminal Dele 2e-04
3aab_A123 Small Heat Shock Protein Hsp14.0 With The Mutations 2e-04
4fei_A102 Hsp17.7 From Deinococcus Radiodurans Length = 102 3e-04
>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat Shock Protein Length = 151 Back     alignment and structure 
Iteration: 1

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 77/115 (66%), Gaps = 6/115 (5%)
Query: 44  AMAATPADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVK 103
           A A    D  E P ++VF  D+PG+K  E+KV+VE  NVLVVSGER ++ ++K++    K
Sbjct: 40  AFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKND----K 95
Query: 104 YVRMERRFGKFMRKFVLPDNANVDKISALCQDGVLTVTVEK--VPPPQPKTIQVQ 156
           + R+ER  GKF+R+F L ++A V+++ A  ++GVLTVTV K  V  P+ K IQ+ 
Sbjct: 96  WHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQIS 150
>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis Length = 100 Back     alignment and structure
>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis Length = 103 Back     alignment and structure
>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer Length = 101 Back     alignment and structure
>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational Flexibility In The Small Heat Shock Protein Hsp26 Length = 93 Back     alignment and structure
>pdb|3VQK|A Chain A, Small Heat Shock Protein Hsp14.0 Of Wild Type Length = 123 Back     alignment and structure
>pdb|3VQL|A Chain A, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion Variant Length = 115 Back     alignment and structure
>pdb|3AAB|A Chain A, Small Heat Shock Protein Hsp14.0 With The Mutations Of I120f And I122f In The Form I Crystal Length = 123 Back     alignment and structure
>pdb|4FEI|A Chain A, Hsp17.7 From Deinococcus Radiodurans Length = 102 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query158
1gme_A151 Heat shock protein 16.9B; small heat shock protein 1e-46
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 2e-37
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 5e-37
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 3e-35
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 7e-20
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 4e-19
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 1e-17
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 3e-17
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 2e-15
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 2e-12
2bol_A 314 TSP36, small heat shock protein; A-crystallin, mol 6e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Length = 151 Back     alignment and structure
 Score =  147 bits (374), Expect = 1e-46
 Identities = 53/148 (35%), Positives = 86/148 (58%), Gaps = 4/148 (2%)

Query: 11  SPFFSILEDVLELPEEQEKTRNNPSRAYVRDAKAMAATPADVMEYPNSYVFIVDMPGIKA 70
           S  F    D+   P +  ++          +  A A    D  E P ++VF  D+PG+K 
Sbjct: 7   SNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKK 66

Query: 71  SEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKIS 130
            E+KV+VE  NVLVVSGER ++ ++K++K    + R+ER  GKF+R+F L ++A V+++ 
Sbjct: 67  EEVKVEVEDGNVLVVSGERTKEKEDKNDK----WHRVERSSGKFVRRFRLLEDAKVEEVK 122

Query: 131 ALCQDGVLTVTVEKVPPPQPKTIQVQVA 158
           A  ++GVLTVTV K    +P+   +Q++
Sbjct: 123 AGLENGVLTVTVPKAEVKKPEVKAIQIS 150
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Length = 161 Back     alignment and structure
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Length = 100 Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Length = 123 Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Length = 175 Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Length = 101 Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Length = 90 Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Length = 106 Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Length = 85 Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314 Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query158
1gme_A151 Heat shock protein 16.9B; small heat shock protein 99.96
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 99.96
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 99.96
4fei_A102 Heat shock protein-related protein; stress respons 99.95
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 99.95
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 99.93
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 99.93
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 99.9
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 99.89
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 99.89
2bol_A 314 TSP36, small heat shock protein; A-crystallin, mol 99.89
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 99.81
1rl1_A114 Suppressor of G2 allele of SKP1 homolog; beta sand 99.14
2xcm_C92 SGT1-like protein, cytosolic heat shock protein 90 99.12
3eud_A115 Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A 98.63
2k8q_A134 Protein SHQ1; beta-sandwich, CS domain, nucleus, s 98.63
3igf_A374 ALL4481 protein; two-domained protein consisting o 98.44
1x5m_A127 Calcyclin-binding protein; CS domain, structural g 98.16
1wh0_A134 Ubiquitin carboxyl-terminal hydrolase 19; USP, CS 98.09
1wgv_A124 KIAA1068 protein; CS domain, HSP20-like fold, stru 98.07
3qor_A121 Nuclear migration protein NUDC; beta-sandwich, cha 97.93
1wfi_A131 Nuclear distribution gene C homolog; NUDC, riken s 97.91
1ejf_A125 Progesterone receptor P23; chaperone, CO-chaperone 97.76
2o30_A131 Nuclear movement protein; MCSG, structural genomic 97.76
2rh0_A157 NUDC domain-containing protein 2; 13542905, nuclea 97.6
2kmw_A150 Uncharacterized protein AT3G03773; protein structu 97.6
2cg9_X134 CO-chaperone protein SBA1; chaperone complex, HSP9 97.43
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 84.68
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Back     alignment and structure
Probab=99.96  E-value=6.9e-30  Score=185.65  Aligned_cols=110  Identities=45%  Similarity=0.695  Sum_probs=98.1

Q ss_pred             ccccCCCCeeEEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECC
Q 031533           42 AKAMAATPADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLP  121 (158)
Q Consensus        42 ~~~~~~p~~~i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP  121 (158)
                      ....+.|+++|.|++++|+|.++|||+++++|+|++.+|+.|+|+|++....    ..++..|+++|+.+|.|.|+|.||
T Consensus        38 ~~~~~~p~~di~e~~d~~~v~~dlPGv~kedI~V~v~~~~~L~I~g~~~~~~----~~~~~~~~~~Er~~g~F~R~~~LP  113 (151)
T 1gme_A           38 TAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEK----EDKNDKWHRVERSSGKFVRRFRLL  113 (151)
T ss_dssp             HHHHGGGCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCC----CCTTCEEEECCCCCCCEEEEEECS
T ss_pred             cccccCCceEEEEcCCEEEEEEECCCCChHHEEEEEecCCEEEEEEEEcccc----ccCCceEEEEeEeccEEEEEEECC
Confidence            3445679999999999999999999999999999996468999999988766    456789999999999999999999


Q ss_pred             CCcccCCeEEEEeCcEEEEEEecCCCCCC--eeEEE
Q 031533          122 DNANVDKISALCQDGVLTVTVEKVPPPQP--KTIQV  155 (158)
Q Consensus       122 ~~vd~~~i~A~~~~GiL~I~lpK~~~~~~--~~i~I  155 (158)
                      .+||.++|+|.|+||+|+|++||.+..++  ++|+|
T Consensus       114 ~~vd~~~i~A~~~nGvL~I~lPK~~~~~~~~~~I~I  149 (151)
T 1gme_A          114 EDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQI  149 (151)
T ss_dssp             SCCCGGGCEEEEETTEEEEEEECCCCCTTCCCCCCC
T ss_pred             CCccccceEEEEECCEEEEEEEccCcCCCCCeEeee
Confidence            99999999999999999999999887665  55555
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Back     alignment and structure
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Back     alignment and structure
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans} Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Back     alignment and structure
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP} Back     alignment and structure
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Back     alignment and structure
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A Back     alignment and structure
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4 Back     alignment and structure
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Back     alignment and structure
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Back     alignment and structure
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus} Back     alignment and structure
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 158
d1gmea_150 b.15.1.1 (A:) Small heat shock protein {Wheat (Tri 2e-27
d1shsa_115 b.15.1.1 (A:) Small heat shock protein {Archaeon M 2e-22
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 150 Back     information, alignment and structure

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score = 98.3 bits (244), Expect = 2e-27
 Identities = 53/148 (35%), Positives = 86/148 (58%), Gaps = 4/148 (2%)

Query: 11  SPFFSILEDVLELPEEQEKTRNNPSRAYVRDAKAMAATPADVMEYPNSYVFIVDMPGIKA 70
           S  F    D+   P +  ++          +  A A    D  E P ++VF  D+PG+K 
Sbjct: 6   SNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKK 65

Query: 71  SEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPDNANVDKIS 130
            E+KV+VE  NVLVVSGER ++ ++K++K    + R+ER  GKF+R+F L ++A V+++ 
Sbjct: 66  EEVKVEVEDGNVLVVSGERTKEKEDKNDK----WHRVERSSGKFVRRFRLLEDAKVEEVK 121

Query: 131 ALCQDGVLTVTVEKVPPPQPKTIQVQVA 158
           A  ++GVLTVTV K    +P+   +Q++
Sbjct: 122 AGLENGVLTVTVPKAEVKKPEVKAIQIS 149
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query158
d1gmea_150 Small heat shock protein {Wheat (Triticum aestivum 99.97
d1shsa_115 Small heat shock protein {Archaeon Methanococcus j 99.94
d1rl1a_92 Suppressor of G2 allele of skp1 homolog, gst1 {Hum 98.55
d1ejfa_110 Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960 97.67
d1wh0a_134 Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H 97.56
d1wfia_131 Nuclear migration protein nudC {Mouse (Mus musculu 97.44
d1wgva_124 NudC domain containing protein 3, NUDCD3 (KIAA1068 97.22
d1rl6a175 Ribosomal protein L6 {Bacillus stearothermophilus 81.14
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=99.97  E-value=6.1e-31  Score=189.27  Aligned_cols=112  Identities=43%  Similarity=0.667  Sum_probs=100.8

Q ss_pred             cccCCCCeeEEEeCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEEEEecCCCCcCCCCCceEEEEeeecceEEEEEECCC
Q 031533           43 KAMAATPADVMEYPNSYVFIVDMPGIKASEIKVQVESENVLVVSGERKRDPKEKDNKDGVKYVRMERRFGKFMRKFVLPD  122 (158)
Q Consensus        43 ~~~~~p~~~i~e~~d~y~i~~~lPG~~~~~i~V~~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~  122 (158)
                      ...+.|+++|.|++++|+|+++|||++++||+|++++|+.|+|+|++....    ..++..++.+|+.+|.|.|+|.||.
T Consensus        38 ~~~~~p~~dv~e~~~~~~i~~~lPG~~~edi~v~v~~~~~l~i~~~~~~~~----~~~~~~~~~~e~~~~~f~r~~~LP~  113 (150)
T d1gmea_          38 AAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEK----EDKNDKWHRVERSSGKFVRRFRLLE  113 (150)
T ss_dssp             HHHGGGCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCC----CCTTCEEEECCCCCCCEEEEEECSS
T ss_pred             cccCCCceeEEECCCEEEEEEEeCCCccCCEEEEEEEccceeEEEEEeccc----ccccceeeeeeeccceEEEEEECCC
Confidence            334568999999999999999999999999999999767899999987776    5677899999999999999999999


Q ss_pred             CcccCCeEEEEeCcEEEEEEecCCCCCCeeEEEeeC
Q 031533          123 NANVDKISALCQDGVLTVTVEKVPPPQPKTIQVQVA  158 (158)
Q Consensus       123 ~vd~~~i~A~~~~GiL~I~lpK~~~~~~~~i~I~~~  158 (158)
                      +||.++|+|.|+||+|+|++||.+..+++++.|+|+
T Consensus       114 ~vd~~~i~A~~~nGvL~I~lpK~~~~~~~~~~I~I~  149 (150)
T d1gmea_         114 DAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQIS  149 (150)
T ss_dssp             CCCGGGCEEEEETTEEEEEEECCCCCTTCCCCCCCC
T ss_pred             CeeeceeEEEEECCEEEEEEEcCCcCCCCceEEecc
Confidence            999999999999999999999998877777777663
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure