Citrus Sinensis ID: 031555

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
Protein Sequence
MALVSGRSTLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDNGGDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSPLPANDALMKNMRVSISPKSSMEAAKYVEKPAKYVNPKCSPRRIQQPR
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHccccHHHHHHHHccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccccccccccHHHHHHHHcccHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccHHccccccHHHHHHHHHHHHHHccccHHHccccccccccHHHHHHcccccccccccccccHccccccccccccccccccccc
Coil and Loop (DISEMBL)
malvsgrstlnpnaplfipaafrqvedfspeWWQLITTSTWYHNYWlsqhqdedgfydnggddefdvsnvadllpdtfdldagenfssieAQFDEFVMSFESElenissplpandaLMKNmrvsispkssMEAAKYvekpakyvnpkcsprriqqpr
Flexible Loop (DISEMBL)
malvsgrstlnpnapLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDNGGDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSPLPANDALMKNMRVSISPKSSMEAAKYvekpakyvnpkcsprriqqpr
Low Complexity Region (SEG)
MALVSGRSTLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDNGGDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSPLPANDALMKNMRVSISPKSSMEAAKYVEKPAKYVNPKCSPRRIQQPR
Disordered region (IsUnstruct)
*************APLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDNGGDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMS**********************************************************
Disordered Region (DISOPRED)
**********NPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDE***YDNGGDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEF******************D**********************EKPAKYVNPKCSPRRIQQP*
Disordered Region (DISEMBL)
********TLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDNGGDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSPLPANDALMKNMRVSISPKSSMEAAKYVEKPAKYVNP***********
Disordered Region (DISPRO)
****SGRSTLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDNGGDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFE************NDA*M***************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALVSGRSTLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDNGGDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSPLPANDALMKNMRVSISPKSSMEAAKYVEKPAKYVNPKCSPRRIQQPR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	157	2.2.26 [Sep-21-2011]
Q39096	163	Protein EARLY RESPONSIVE	yes	no	0.980	0.944	0.524	4e-32
Q94AR4	143	Polyadenylate-binding pro	no	no	0.834	0.916	0.366	9e-15

>sp|Q39096|ERD15_ARATH Protein EARLY RESPONSIVE TO DEHYDRATION 15 OS=Arabidopsis thaliana GN=ERD15 PE=1 SV=1

 Score =  136 bits (343), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 87/166 (52%), Positives = 110/166 (66%), Gaps = 12/166 (7%)

Query: 1   MALVSGR-STLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLS-QHQDEDGFYD 58
           MA+VSGR STLNP+APLFIPAA RQVEDFSPEWWQL+TTSTWY +YW+S Q Q  DGFYD
Sbjct: 1   MAMVSGRRSTLNPDAPLFIPAAVRQVEDFSPEWWQLVTTSTWYPDYWISQQQQGADGFYD 60

Query: 59  NGGDDEFDVS-NVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSP----LPA 113
           NG ++      +VADLLP++FD D  E+F   +A   EF   F+  +    +P       
Sbjct: 61  NGENENGGGHIDVADLLPESFDFDDMEDFFDTDAA--EFDQGFDGRM-YYQAPSEFGFGK 117

Query: 114 NDALMKNMRVSISPKSSMEAAKYVEKPAKYVNPK--CSPRRIQQPR 157
           N  ++K    + SP+S +E AKY EKPAK+ N +   +PR I QPR
Sbjct: 118 NGEMVKKSSGNRSPRSIVEPAKYAEKPAKWGNQRVAAAPRNIHQPR 163

Central component of stress responses that interacts with poly(A)-binding proteins. Negative regulator of abscisic acid (ABA) responses, including resistance to drought and freezing as well as stomatal closure regulation. Mediates resistance to the bacterial necrotroph pathogen Erwinia carotovora subsp. carotovora and promotes the induction of marker genes for systemic acquired resistance (SAR).
Arabidopsis thaliana (taxid: 3702)

>sp|Q94AR4|CID2_ARATH Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana GN=CID2 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 56/153 (36%), Positives = 81/153 (52%), Gaps = 22/153 (14%)

Query: 8   STLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDNGGDDEFDV 67
           STLNPNAP+F P  FR+VEDFSP+WW L+TTS W+ ++WLS + + +     GGD   D 
Sbjct: 10  STLNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSANSENEFL---GGD---DF 63

Query: 68  SNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSPLPANDALMKNMRVSISP 127
           S + +   +      G + +    + D  V S+   L NI+      + + ++   S SP
Sbjct: 64  SVMEEEFEEMIASSDGGSMADTVTEAD--VASYLKMLLNIAE--STKEKIYRSKVSSCSP 119

Query: 128 KSSMEAAKYVEKPAKYVNPKCSPRR---IQQPR 157
                  KY +K  KY+NP  + RR   I QPR
Sbjct: 120 -------KYNQK--KYMNPNFNCRRNHHIYQPR 143

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
225441339	169	PREDICTED: polyadenylate-binding protein	0.980	0.911	0.610	3e-47
255578451	136	conserved hypothetical protein [Ricinus	0.853	0.985	0.618	1e-42
310896463	157	ERD15 protein [Brassica napus]	0.968	0.968	0.561	2e-41
157849736	157	ERD15 protein [Brassica rapa]	0.968	0.968	0.555	2e-40
82734828	161	ERD15 [Capsicum annuum]	0.968	0.944	0.554	2e-39
224086898	143	predicted protein [Populus trichocarpa]	0.770	0.846	0.625	2e-37
224137762	157	predicted protein [Populus trichocarpa]	0.694	0.694	0.683	7e-37
118482662	143	unknown [Populus trichocarpa]	0.770	0.846	0.618	7e-37
225449913	172	PREDICTED: polyadenylate-binding protein	0.974	0.889	0.505	3e-36
388508828	169	unknown [Medicago truncatula]	0.993	0.923	0.488	3e-36

>gi|225441339|ref|XP_002276510.1| PREDICTED: polyadenylate-binding protein-interacting protein 2 [Vitis vinifera] gi|147782754|emb|CAN70573.1| hypothetical protein VITISV_027129 [Vitis vinifera]

 Score =  192 bits (489), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 105/172 (61%), Positives = 121/172 (70%), Gaps = 18/172 (10%)

Query: 1   MALVSG-RSTLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDN 59
           MALV+G RSTLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTW+ +YWLSQHQ+ D F  N
Sbjct: 1   MALVTGGRSTLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWFRDYWLSQHQEGDIFNCN 60

Query: 60  GGDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSPLPAN----- 114
             DDEFD +++ADLLPD FD    E+FS +EAQF+EF+ S E+E  N  S L  N     
Sbjct: 61  NADDEFDANDIADLLPDAFDFGTEEDFSHMEAQFEEFIQSSEAEEANKPSHLALNGTSGN 120

Query: 115 -------DALMK--NMRVSISPKSSMEAAKYVEKPAKYVNPKCSPRRIQQPR 157
                  +ALMK  N R    PKS  E AKY EK  + ++PKCSPR IQQPR
Sbjct: 121 GSAVMDVNALMKFTNER---GPKSLAEPAKYQEKAGRCMSPKCSPRPIQQPR 169

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578451|ref|XP_002530090.1| conserved hypothetical protein [Ricinus communis] gi|223530401|gb|EEF32289.1| conserved hypothetical protein [Ricinus communis]

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 94/152 (61%), Positives = 112/152 (73%), Gaps = 18/152 (11%)

Query: 1   MALVSG-RSTLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDN 59
           MALVSG RSTLNP+APLFIPAA+RQVEDFSPEWWQL+T STWY +YWLSQHQDEDGFYDN
Sbjct: 1   MALVSGGRSTLNPDAPLFIPAAYRQVEDFSPEWWQLVTNSTWYRDYWLSQHQDEDGFYDN 60

Query: 60  GGDDE-FDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSPLPANDALM 118
             DDE FD ++V DLLP+TFDLDAGE FSS+EAQF EFV S+E+E++ +        A  
Sbjct: 61  AEDDEGFDGNDVVDLLPETFDLDAGEYFSSLEAQFHEFVDSYETEVDGLEG------AAA 114

Query: 119 KNMRVSISPKSSMEAAKYVEKPAKYVNPKCSP 150
               V++S  ++          AK V+ KCSP
Sbjct: 115 PKKDVTVSAAAA----------AKNVSLKCSP 136

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|310896463|gb|ADP37978.1| ERD15 protein [Brassica napus]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 91/162 (56%), Positives = 111/162 (68%), Gaps = 10/162 (6%)

Query: 1   MALVSGR-STLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDN 59
           MA+VSGR STLNPNAPLF+PAA RQVEDFSPEWWQL+TTSTWYH+YW+SQHQ  DGFYDN
Sbjct: 1   MAMVSGRRSTLNPNAPLFVPAAVRQVEDFSPEWWQLVTTSTWYHDYWISQHQGADGFYDN 60

Query: 60  GGDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSP----LPAND 115
           GG  E D   VADLLP++FD D  E+    E++FD          +   +P    L  N 
Sbjct: 61  GGSGEVD---VADLLPESFDFDDIEDV--FESEFDHQGYGGYVGQQMYHAPSDFGLGKNG 115

Query: 116 ALMKNMRVSISPKSSMEAAKYVEKPAKYVNPKCSPRRIQQPR 157
            +++    + SP+S +E AKY EKPAK+ N K +PR I QPR
Sbjct: 116 EMVRKSSGNRSPRSIVEPAKYAEKPAKWGNQKVAPRNIHQPR 157

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|157849736|gb|ABV89651.1| ERD15 protein [Brassica rapa]

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 90/162 (55%), Positives = 110/162 (67%), Gaps = 10/162 (6%)

Query: 1   MALVSGR-STLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDN 59
           MA+VSGR STLNPNAPLF+PAA RQVEDFSPEWWQL+TTSTWYH+YW+SQHQ  DGFYDN
Sbjct: 1   MAMVSGRRSTLNPNAPLFVPAAVRQVEDFSPEWWQLVTTSTWYHDYWISQHQGADGFYDN 60

Query: 60  GGDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSP----LPAND 115
           G   E D   VADLLP++FD D  E+    E++FD          +   +P    L  N 
Sbjct: 61  GESQEVD---VADLLPESFDFDDIEDV--FESEFDHQGYGGYVGQQMYHAPSDFGLGKNG 115

Query: 116 ALMKNMRVSISPKSSMEAAKYVEKPAKYVNPKCSPRRIQQPR 157
            +++    + SP+S +E AKY EKPAK+ N K +PR I QPR
Sbjct: 116 EMVRKSSGNRSPRSIVEPAKYAEKPAKWGNQKVAPRNIHQPR 157

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|82734828|gb|ABB89735.1| ERD15 [Capsicum annuum]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 92/166 (55%), Positives = 112/166 (67%), Gaps = 14/166 (8%)

Query: 1   MALVSG-RSTLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDN 59
           MALVSG RSTLNPNAPLFIP+  RQVEDFSPEWW L+TT+TW+ +YW SQHQDE+     
Sbjct: 1   MALVSGGRSTLNPNAPLFIPSYVRQVEDFSPEWWNLVTTATWFRDYWTSQHQDEE----- 55

Query: 60  GGDDEFDVS--NVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSPLPANDAL 117
            GDD+F ++  +VADLLP+  DLD  E+  ++EAQF+EF+ S  SE + I S     + L
Sbjct: 56  FGDDDFGLAGNDVADLLPENIDLDVDEDILNMEAQFEEFLQSSASEQQGIKSSYSGVNGL 115

Query: 118 MKNMRVSI------SPKSSMEAAKYVEKPAKYVNPKCSPRRIQQPR 157
            K     +       PKS  E  KY EKPAK V+PK S RRIQQPR
Sbjct: 116 PKGSEALVRTLSMPKPKSPFETPKYHEKPAKIVSPKNSLRRIQQPR 161

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086898|ref|XP_002307999.1| predicted protein [Populus trichocarpa] gi|222853975|gb|EEE91522.1| predicted protein [Populus trichocarpa]

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 82/131 (62%), Positives = 103/131 (78%), Gaps = 10/131 (7%)

Query: 1   MALVSG-RSTLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDN 59
           MALVSG RSTLNP+APLF+PAA+RQVEDFSPEWWQL+TT+TW+ +YWLSQHQDE+GFYDN
Sbjct: 11  MALVSGGRSTLNPDAPLFVPAAYRQVEDFSPEWWQLVTTTTWFRDYWLSQHQDENGFYDN 70

Query: 60  GGDD-EFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSPLPANDALM 118
             +D  FD ++VADLLPDTFDLDAG+ F+S+EAQF +F+       E   SPLP++  L 
Sbjct: 71  AENDFGFDGNDVADLLPDTFDLDAGDYFTSLEAQFADFI-------EESFSPLPSDGMLE 123

Query: 119 KNMRVSI-SPK 128
               + + +PK
Sbjct: 124 NGFMLEVEAPK 134

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137762|ref|XP_002322645.1| predicted protein [Populus trichocarpa] gi|222867275|gb|EEF04406.1| predicted protein [Populus trichocarpa]

 Score =  158 bits (400), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 82/120 (68%), Positives = 97/120 (80%), Gaps = 11/120 (9%)

Query: 1   MALVSG-RSTLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDN 59
           MALVSG RSTLNP+APLF+PAA+RQVEDFSPEWWQL+TT+TW+ +YWLSQHQDE+GFYDN
Sbjct: 25  MALVSGGRSTLNPDAPLFVPAAYRQVEDFSPEWWQLVTTTTWFRDYWLSQHQDENGFYDN 84

Query: 60  GGDDEF--DVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSPLPANDAL 117
             +DEF  D +NVADLLPDTFDLDAG+ FSS+++QF  F        E  SSPL +N  L
Sbjct: 85  -AEDEFGLDGNNVADLLPDTFDLDAGDYFSSLDSQFAGFA-------EEGSSPLLSNGML 136

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482662|gb|ABK93250.1| unknown [Populus trichocarpa]

 Score =  158 bits (400), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 81/131 (61%), Positives = 103/131 (78%), Gaps = 10/131 (7%)

Query: 1   MALVSG-RSTLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDN 59
           MALVSG RSTLNP+APLF+PAA+RQVEDFSPEWWQL+TT+TW+ +YWLSQHQDE+GFYDN
Sbjct: 11  MALVSGGRSTLNPDAPLFVPAAYRQVEDFSPEWWQLVTTTTWFRDYWLSQHQDENGFYDN 70

Query: 60  GGDD-EFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSPLPANDALM 118
             +D  FD ++VADLLP+TFDLDAG+ F+S+EAQF +F+       E   SPLP++  L 
Sbjct: 71  AENDFGFDGNDVADLLPNTFDLDAGDYFTSLEAQFADFI-------EESFSPLPSDGMLE 123

Query: 119 KNMRVSI-SPK 128
               + + +PK
Sbjct: 124 NGFMLEVEAPK 134

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449913|ref|XP_002268033.1| PREDICTED: polyadenylate-binding protein-interacting protein 2 [Vitis vinifera] gi|296081303|emb|CBI17747.3| unnamed protein product [Vitis vinifera]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 89/176 (50%), Positives = 113/176 (64%), Gaps = 23/176 (13%)

Query: 1   MALVSG-RSTLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDN 59
           MALVSG RSTLNPNAPLFIPAAFRQVEDFSPEWW+L+ TSTW+ +YWLSQHQD++ F  N
Sbjct: 1   MALVSGGRSTLNPNAPLFIPAAFRQVEDFSPEWWKLVKTSTWFRDYWLSQHQDDENFEVN 60

Query: 60  GGDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSPL-------P 112
            G D+    +V +LLP+TFDL   E    +E Q +E +   E++    S+         P
Sbjct: 61  DGADD----DVLNLLPETFDLGIDEESLDLEVQMEELIQLSETKEGTESASTVSKTGRKP 116

Query: 113 AN------DALMKNMRV-----SISPKSSMEAAKYVEKPAKYVNPKCSPRRIQQPR 157
            N      +ALMKN+ +       SPK+ +  AKY EK A+ ++PK  PRRI QPR
Sbjct: 117 VNGLKLETEALMKNLNLGNSPKGKSPKTPVGPAKYHEKAAQCMSPKYGPRRINQPR 172

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508828|gb|AFK42480.1| unknown [Medicago truncatula]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 83/170 (48%), Positives = 118/170 (69%), Gaps = 14/170 (8%)

Query: 1   MALVSGRST-LNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDN 59
           MALV+GRS+ LNPNAPLFIPAAFRQVEDFSP+WW+L+ +STW+HNYWLSQH++ED F ++
Sbjct: 1   MALVTGRSSALNPNAPLFIPAAFRQVEDFSPQWWELVKSSTWFHNYWLSQHKEED-FVES 59

Query: 60  GGDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESEL-----ENISSPLPAN 114
           GG+D  +  ++  +L +TFDL   E+F+ ++ +F++ VMS E++      E +    P +
Sbjct: 60  GGNDATNDDDIEHMLSETFDLGIEEDFNFLDNEFEKLVMSDEAQECPVMDEPVEEKTPVH 119

Query: 115 D------ALMKNMR-VSISPKSSMEAAKYVEKPAKYVNPKCSPRRIQQPR 157
                  AL+K +       KS + + K  EKPA+YVN KC+P+RI QPR
Sbjct: 120 GVNKDAAALIKILSPKERGSKSPIGSPKQFEKPAQYVNLKCAPQRIHQPR 169

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
TAIR|locus:2060529	163	ERD15 "AT2G41430" [Arabidopsis	0.980	0.944	0.524	8e-37
TAIR|locus:2129570	143	AT4G14270 "AT4G14270" [Arabido	0.751	0.825	0.369	9.8e-16

TAIR|locus:2060529 ERD15 "AT2G41430" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 87/166 (52%), Positives = 110/166 (66%)

Query:     1 MALVSGR-STLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQD-EDGFYD 58
             MA+VSGR STLNP+APLFIPAA RQVEDFSPEWWQL+TTSTWY +YW+SQ Q   DGFYD
Sbjct:     1 MAMVSGRRSTLNPDAPLFIPAAVRQVEDFSPEWWQLVTTSTWYPDYWISQQQQGADGFYD 60

Query:    59 NGGDDEFDVS-NVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSP----LPA 113
             NG ++      +VADLLP++FD D  E+F   +A   EF   F+  +    +P       
Sbjct:    61 NGENENGGGHIDVADLLPESFDFDDMEDFFDTDAA--EFDQGFDGRMY-YQAPSEFGFGK 117

Query:   114 NDALMKNMRVSISPKSSMEAAKYVEKPAKYVNPK--CSPRRIQQPR 157
             N  ++K    + SP+S +E AKY EKPAK+ N +   +PR I QPR
Sbjct:   118 NGEMVKKSSGNRSPRSIVEPAKYAEKPAKWGNQRVAAAPRNIHQPR 163

GO:0009617 "response to bacterium" evidence=IEP

GO:0005737 "cytoplasm" evidence=ISS

GO:0009644 "response to high light intensity" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009646 "response to absence of light" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0009414 "response to water deprivation" evidence=NAS

TAIR|locus:2129570 AT4G14270 "AT4G14270" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 48/130 (36%), Positives = 73/130 (56%)

Query:     8 STLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDNGGDDEFDV 67
             STLNPNAP+F P  FR+VEDFSP+WW L+TTS W+ ++WLS + + + F   GGDD F V
Sbjct:    10 STLNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSANSENE-FL--GGDD-FSV 65

Query:    68 SNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSPLPANDALMKNMRVSISP 127
               + +   +      G + +    + D  V S+   L NI+      + + ++   S SP
Sbjct:    66 --MEEEFEEMIASSDGGSMADTVTEAD--VASYLKMLLNIAES--TKEKIYRSKVSSCSP 119

Query:   128 KSSMEAAKYV 137
             K + +  KY+
Sbjct:   120 KYNQK--KYM 127


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.131   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      157       157   0.00079  106 3  11 23  0.40    32
                                                     30  0.42    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  162 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.55u 0.12s 16.67t   Elapsed:  00:00:00
  Total cpu time:  16.55u 0.12s 16.67t   Elapsed:  00:00:00
  Start:  Sat May 11 06:57:25 2013   End:  Sat May 11 06:57:25 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q39096	ERD15_ARATH	No assigned EC number	0.5240	0.9808	0.9447	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	157
PF07145	18	PAM2: Ataxin-2 C-terminal region; InterPro: IPR009	97.83
PF15228	97	DAP: Death-associated protein	82.17

>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2

Probab=97.83  E-value=9e-06  Score=45.14  Aligned_cols=15  Identities=60%  Similarity=1.074  Sum_probs=12.7

Q ss_pred             CCCCCCCCCccccch
Q 031555            7 RSTLNPNAPLFIPAA   21 (157)
Q Consensus         7 ~StLNPnAplFiPaa   21 (157)
                      .|+||||||.|||..
T Consensus         3 ~s~LNp~A~eFvP~~   17 (18)
T PF07145_consen    3 SSKLNPNAPEFVPSS   17 (18)
T ss_dssp             SSSSSTTSSSS-TTT
T ss_pred             ccccCCCCccccCCC
Confidence            699999999999974

Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A.

>PF15228 DAP: Death-associated protein

Probab=82.17  E-value=0.98  Score=33.81  Aligned_cols=29  Identities=34%  Similarity=0.391  Sum_probs=22.6

Q ss_pred             CchhhcccccCCCcccCCCCCCC---ccCCCC
Q 031555          129 SSMEAAKYVEKPAKYVNPKCSPR---RIQQPR  157 (157)
Q Consensus       129 ~~~e~pky~EKp~k~v~~k~spR---~IhQPR  157 (157)
                      .+..+..|.+||.=-+..+.++|   .|||||
T Consensus        65 P~~AvqvaHqKP~P~~ek~~~~~~~~~IqQPR   96 (97)
T PF15228_consen   65 PPEAVQVAHQKPRPAVEKPPPPRRINIIQQPR   96 (97)
T ss_pred             cHHHHHHhhcCCCccccCcCCCCCCccccCCC
Confidence            34666677899998888887776   379999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	157
1jh4_B	26	PAIP1, polyadenylate-binding protein-interacting p	95.39
1jgn_B	26	PAIP2, polyadenylate-binding protein-interacting p	89.79

>1jh4_B PAIP1, polyadenylate-binding protein-interacting protein-1; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens} PDB: 3ntw_B

Probab=95.39  E-value=0.0056  Score=36.00  Aligned_cols=19  Identities=37%  Similarity=0.602  Sum_probs=17.2

Q ss_pred             CCCCCCCCCccccchhhhc
Q 031555            7 RSTLNPNAPLFIPAAFRQV   25 (157)
Q Consensus         7 ~StLNPnAplFiPaa~r~V   25 (157)
                      .|+|-||||.|+|..|.++
T Consensus         3 ~S~LS~~ApeF~Psgys~~   21 (26)
T 1jh4_B            3 MSKLSVNAPEFYPSGYSSS   21 (26)
T ss_dssp             CCCSSCCCSCCCCTTCCCC
T ss_pred             ccccCcCCceeccCccccc
Confidence            6999999999999999765

>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}

Probab=89.79  E-value=0.13  Score=30.04  Aligned_cols=15  Identities=53%  Similarity=0.930  Sum_probs=13.4

Q ss_pred             CCCCCCCCCccccch
Q 031555            7 RSTLNPNAPLFIPAA   21 (157)
Q Consensus         7 ~StLNPnAplFiPaa   21 (157)
                      .|.|||+|--|||..
T Consensus         3 ks~lnp~akef~pgv   17 (26)
T 1jgn_B            3 KSNLNPNAKEFVPGV   17 (26)
T ss_dssp             CCSSCTTCCCCCTTS
T ss_pred             cccCCcchhhcCCCc
Confidence            589999999999973

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00