Citrus Sinensis ID: 031557

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
Protein Sequence
MASTSAFTAQISSIHWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSLRVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEVKTFTLSY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEEcccEEEEEEEcccccEEEEEcHHHHHccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEcccccccEEEEEEEcccccEEEEEcHHHHHccccEEEEEEcc
Coil and Loop (DISEMBL)
MASTSAFTAQISsihwkkptsssnfsnnlnlnsnlagkemlsfssqqksghqfRSLRVYglfggkkdnnekgddapskagiLGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTlsgnqqpvRTEITEAAMELGAEVKTFTLSY
Flexible Loop (DISEMBL)
mastsaftaqissihwkkptsssnfsNNLNLNSNLAGKEMLSFssqqksghqfRSLRVYGLFggkkdnnekgddapskAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKvtlsgnqqpVRTEITEAAMelgaevktftlsy
Low Complexity Region (SEG)
MASTSAFTAQISSIHWKKPTsssnfsnnlnlnsnlAGKEMLSFSSQQKSGHQFRSLRVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEVKTFTLSY
Disordered region (IsUnstruct)
*******************************************************LRVYGLF******************ILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGN**************************
Disordered Region (DISOPRED)
*********QISSIHWKKP***************LAGKEML***************RVYG*****************************************************EFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEVKTFTLSY
Disordered Region (DISEMBL)
***********SSIHWKKPTSSSNFSNNLNLNSNLAGKEMLS***********RSLRVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEVKTFTLSY
Disordered Region (DISPRO)
***********SSIHW*KPTSSSNFSN*LNL*******EMLSF*******HQFRSLRVYGLFGGK***********SKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEVKTFTLSY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASTSAFTAQISSIHWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSLRVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEVKTFTLSY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	157	2.2.26 [Sep-21-2011]
Q8GMT0	113	Nucleoid-associated prote	no	no	0.433	0.601	0.478	4e-08
Q5N376	113	Nucleoid-associated prote	yes	no	0.433	0.601	0.478	4e-08
Q8YM73	115	Nucleoid-associated prote	yes	no	0.433	0.591	0.478	7e-08
B2J719	115	Nucleoid-associated prote	yes	no	0.433	0.591	0.492	1e-07
Q3MAP6	115	Nucleoid-associated prote	yes	no	0.433	0.591	0.478	2e-07
B8HWY2	114	Nucleoid-associated prote	yes	no	0.420	0.578	0.432	4e-06
Q7V3Q0	116	Nucleoid-associated prote	yes	no	0.375	0.508	0.433	2e-05
Q31DG4	116	Nucleoid-associated prote	yes	no	0.375	0.508	0.416	4e-05
A2BTV8	116	Nucleoid-associated prote	yes	no	0.401	0.543	0.406	4e-05
A2BNE6	116	Nucleoid-associated prote	yes	no	0.375	0.508	0.416	5e-05

>sp|Q8GMT0|Y464_SYNE7 Nucleoid-associated protein Synpcc7942_0464 OS=Synechococcus elongatus (strain PCC 7942) GN=Synpcc7942_0464 PE=3 SV=2

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 82  LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
           LG M+ L +  KKAQ V Q  A +VQ++L   E +G  +G L+KV +SGNQ+P+R EI  
Sbjct: 10  LGKMKELADAFKKAQQV-QEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAP 68

Query: 142 AAMELGAEV 150
            A+  GAEV
Sbjct: 69  EALNEGAEV 77

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

>sp|Q5N376|Y1054_SYNP6 Nucleoid-associated protein syc1054_d OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc1054_d PE=3 SV=1

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 82  LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
           LG M+ L +  KKAQ V Q  A +VQ++L   E +G  +G L+KV +SGNQ+P+R EI  
Sbjct: 10  LGKMKELADAFKKAQQV-QEGAKQVQEDLNNMEIEGQAQGGLVKVWVSGNQEPLRAEIAP 68

Query: 142 AAMELGAEV 150
            A+  GAEV
Sbjct: 69  EALNEGAEV 77

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

>sp|Q8YM73|Y5067_NOSS1 Nucleoid-associated protein alr5067 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr5067 PE=3 SV=1

 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 82  LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
           LG M+ L E  KKAQ V Q  A R+Q+EL   E  G   G L+KV +SGNQ+P R EI+ 
Sbjct: 12  LGKMKELAEAFKKAQQV-QEGAKRLQEELEQMEIQGEAGGGLVKVIVSGNQEPKRVEISP 70

Query: 142 AAMELGAEV 150
            A+  GA++
Sbjct: 71  DALAQGADL 79

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|B2J719|Y448_NOSP7 Nucleoid-associated protein Npun_F0448 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=Npun_F0448 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 82  LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
           LG M+ L +  KKAQ V Q  A R+Q+EL   E  G   G L+KV +SGNQ+P R EI+ 
Sbjct: 12  LGKMKELADAFKKAQQV-QEGAKRLQEELEQMEILGESGGGLVKVIVSGNQEPKRVEISP 70

Query: 142 AAMELGAEV 150
            A+  GAEV
Sbjct: 71  DALAEGAEV 79

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

>sp|Q3MAP6|Y2322_ANAVT Nucleoid-associated protein Ava_2322 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=Ava_2322 PE=3 SV=1

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 82  LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
           LG M+ L E  KKAQ V Q  A R+Q+EL   E  G   G L+KV +SGNQ+P R EI+ 
Sbjct: 12  LGKMKELAEAFKKAQQV-QEGAKRLQEELEQMEILGEAGGGLVKVIVSGNQEPKRVEISP 70

Query: 142 AAMELGAEV 150
            A+  GA++
Sbjct: 71  DALAQGADL 79

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

>sp|B8HWY2|Y899_CYAP4 Nucleoid-associated protein Cyan7425_0899 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=Cyan7425_0899 PE=3 SV=1

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 84  NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAA 143
            M+ L   ++KAQ V Q  A ++Q++L   E +G   G L+KV +SGNQ+P R EI+   
Sbjct: 13  KMKELAAAIQKAQQV-QEGAKKLQEDLEKMEIEGVAAGGLVKVIMSGNQEPRRVEISPDL 71

Query: 144 MELGAEV 150
           M  GAEV
Sbjct: 72  MSEGAEV 78

Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961)

>sp|Q7V3Q0|Y020_PROMP Nucleoid-associated protein PMM0020 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=PMM0020 PE=3 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 82  LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
           L N   L E  KKA+  +Q  A ++Q EL + E +G  + E+IKV +SGNQ P+R E+ E
Sbjct: 6   LPNFGQLTEAFKKAK-EIQQNAQKLQDELESMEIEGKSDDEMIKVWISGNQLPLRVEVNE 64

Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) (taxid: 59919)

>sp|Q31DG4|Y020_PROM9 Nucleoid-associated protein PMT9312_0020 OS=Prochlorococcus marinus (strain MIT 9312) GN=PMT9312_0020 PE=3 SV=1

 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 82  LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
           L N   L E  KKA+ + Q +A ++Q EL   E +G  + E++KV +SGNQ P+R E+ E
Sbjct: 6   LPNFGQLTEAFKKAKQIQQ-DAQKLQDELENMEIEGESDDEMVKVWISGNQLPLRVEVQE 64

Prochlorococcus marinus (strain MIT 9312) (taxid: 74546)

>sp|A2BTV8|Y019_PROM5 Nucleoid-associated protein P9515_00191 OS=Prochlorococcus marinus (strain MIT 9515) GN=P9515_00191 PE=3 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 82  LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
           L N   L E  KKA+  +Q  A ++Q EL + E +G  + E+IKV +SGNQ P+R E+ +
Sbjct: 6   LPNFGQLTEAFKKAK-EIQQNAQKLQDELESMEIEGKSDDEMIKVWISGNQLPLRVEVKD 64

Query: 142 AAME 145
              E
Sbjct: 65  TIAE 68

Prochlorococcus marinus (strain MIT 9515) (taxid: 167542)

>sp|A2BNE6|Y019_PROMS Nucleoid-associated protein A9601_00191 OS=Prochlorococcus marinus (strain AS9601) GN=A9601_00191 PE=3 SV=1

 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 82  LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
           L N   L E  KKA+ + Q +A ++Q EL   E +G  + E+IKV +SGNQ P++ E+ E
Sbjct: 6   LPNFGQLTEAFKKAKQIQQ-DAQKLQDELENMEIEGKSDDEMIKVWISGNQLPLKVEVQE 64

Prochlorococcus marinus (strain AS9601) (taxid: 146891)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
224142377	196	predicted protein [Populus trichocarpa]	0.949	0.760	0.745	1e-59
255577037	195	conserved hypothetical protein [Ricinus	0.942	0.758	0.745	4e-56
225445842	196	PREDICTED: UPF0133 protein Synpcc7942_04	0.949	0.760	0.712	2e-52
356543329	196	PREDICTED: UPF0133 protein Synpcc7942_04	0.949	0.760	0.679	1e-50
351724105	195	uncharacterized protein LOC100305795 [Gl	0.942	0.758	0.653	2e-47
388500608	188	unknown [Lotus japonicus]	0.923	0.771	0.657	6e-46
223948417	186	unknown [Zea mays] gi|413926357|gb|AFW66	0.904	0.763	0.652	6e-46
413935880	265	hypothetical protein ZEAMMB73_296576 [Ze	0.910	0.539	0.630	2e-45
388507246	188	unknown [Lotus japonicus]	0.923	0.771	0.651	2e-45
226501168	186	uncharacterized protein LOC100273390 [Ze	0.910	0.768	0.630	3e-45

>gi|224142377|ref|XP_002324535.1| predicted protein [Populus trichocarpa] gi|222865969|gb|EEF03100.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 114/153 (74%), Positives = 133/153 (86%), Gaps = 4/153 (2%)

Query: 1   MASTSAFTAQISSIH----WKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSL 56
           MAST+A TAQ+++++    WK+P  +S    NLNLN+N+ GK++LS+S +QKS   +RS 
Sbjct: 1   MASTTAVTAQVTNLNGLGDWKRPFPASLPLGNLNLNANVVGKQLLSWSGKQKSERNYRSF 60

Query: 57  RVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 116
           RV GLFGGKK+N+EK DDAPSKAGI GNMQNLYETVKKAQMVVQVEAVRVQKELA+AEFD
Sbjct: 61  RVIGLFGGKKENSEKSDDAPSKAGIFGNMQNLYETVKKAQMVVQVEAVRVQKELASAEFD 120

Query: 117 GYCEGELIKVTLSGNQQPVRTEITEAAMELGAE 149
           GYCEGELIKVTL+GNQQPVRTEITEAAMELGAE
Sbjct: 121 GYCEGELIKVTLTGNQQPVRTEITEAAMELGAE 153

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577037|ref|XP_002529403.1| conserved hypothetical protein [Ricinus communis] gi|223531151|gb|EEF32999.1| conserved hypothetical protein [Ricinus communis]

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 114/153 (74%), Positives = 129/153 (84%), Gaps = 5/153 (3%)

Query: 1   MASTSAFTAQISSIH----WKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSL 56
           MASTSA  A++S+++    WKKP  SS    NL+LN+NL G++++S+   QKS    RSL
Sbjct: 1   MASTSAVAARVSNLNGLADWKKPNHSSFPIGNLSLNANLVGQQLVSWPGHQKSRRCSRSL 60

Query: 57  RVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 116
           RV+GLFGGKKDNNEK D+  SKAGILGNMQNLYETVKKAQMVVQVEAV+VQKELA AEFD
Sbjct: 61  RVHGLFGGKKDNNEKSDEQ-SKAGILGNMQNLYETVKKAQMVVQVEAVKVQKELALAEFD 119

Query: 117 GYCEGELIKVTLSGNQQPVRTEITEAAMELGAE 149
           GYCEGELIKVTLSGNQQPVRTEITEAAMELGAE
Sbjct: 120 GYCEGELIKVTLSGNQQPVRTEITEAAMELGAE 152

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445842|ref|XP_002277907.1| PREDICTED: UPF0133 protein Synpcc7942_0464 [Vitis vinifera] gi|297743656|emb|CBI36539.3| unnamed protein product [Vitis vinifera]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/153 (71%), Positives = 120/153 (78%), Gaps = 4/153 (2%)

Query: 1   MASTSAFTAQISSI----HWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSL 56
           MASTSA T QIS++      K  TSSS F   L+ N+NL    M    +  + G+  RS+
Sbjct: 1   MASTSALTTQISNLCGFTDCKNTTSSSLFFCKLSPNTNLVSTRMFCQYADSRMGNNRRSV 60

Query: 57  RVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 116
           RVYGLFGG K+N+EKGDDA SKAG LGNMQNLYETVKKAQMVVQVEAV+VQKELA AEFD
Sbjct: 61  RVYGLFGGNKENSEKGDDARSKAGFLGNMQNLYETVKKAQMVVQVEAVKVQKELAEAEFD 120

Query: 117 GYCEGELIKVTLSGNQQPVRTEITEAAMELGAE 149
           GYCEGELIKVTLSGNQQPVRTEITEAAMELG E
Sbjct: 121 GYCEGELIKVTLSGNQQPVRTEITEAAMELGPE 153

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543329|ref|XP_003540114.1| PREDICTED: UPF0133 protein Synpcc7942_0464-like [Glycine max]

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 104/153 (67%), Positives = 115/153 (75%), Gaps = 4/153 (2%)

Query: 1   MASTSAFTAQISSI----HWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSL 56
           M +T   T  +S+      WKK    S     L+ NSN+   ++LS    QK G+  R  
Sbjct: 1   MTTTPCVTGALSNAVGFRDWKKHVPLSASLCKLSFNSNIVDMKILSRCGCQKVGNDQRCF 60

Query: 57  RVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 116
           R+Y LFGGKKDN+ K DDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD
Sbjct: 61  RLYALFGGKKDNSGKSDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 120

Query: 117 GYCEGELIKVTLSGNQQPVRTEITEAAMELGAE 149
           GYCEGEL+KVTLSGNQQPVRTEITEAAMELG E
Sbjct: 121 GYCEGELVKVTLSGNQQPVRTEITEAAMELGPE 153

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724105|ref|NP_001236790.1| uncharacterized protein LOC100305795 [Glycine max] gi|255626621|gb|ACU13655.1| unknown [Glycine max]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 100/153 (65%), Positives = 113/153 (73%), Gaps = 5/153 (3%)

Query: 1   MASTSAFTAQISSI----HWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSL 56
           M +  + T  +S+      WKK    S     L+ +SN+   + +S    +K GH  R  
Sbjct: 1   MTTAPSLTGPLSNAVGFSDWKKHAPLSASLCKLSSSSNIVDMK-ISRCGCRKVGHGQRCF 59

Query: 57  RVYGLFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFD 116
           R+Y LFGGKKDNN K DD PSKAGILGNMQNLYETVKKAQMVVQVEA RVQKELAAAEFD
Sbjct: 60  RLYALFGGKKDNNGKSDDVPSKAGILGNMQNLYETVKKAQMVVQVEAARVQKELAAAEFD 119

Query: 117 GYCEGELIKVTLSGNQQPVRTEITEAAMELGAE 149
           GYCEGEL+KVTLSGNQQPVRTEITEAAMELG+E
Sbjct: 120 GYCEGELVKVTLSGNQQPVRTEITEAAMELGSE 152

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500608|gb|AFK38370.1| unknown [Lotus japonicus]

 Score =  188 bits (478), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 98/149 (65%), Positives = 112/149 (75%), Gaps = 4/149 (2%)

Query: 1   MASTSAFTAQISSIHWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSLRVYG 60
           MAST +    I        T SS     LN +S++   ++L  S  +K+GH  R LR+YG
Sbjct: 1   MASTVSLPNAIGLCPRNNHTLSSTSHCKLNSSSSIVDMKILPQSGSRKAGHGQRHLRLYG 60

Query: 61  LFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCE 120
           LFGGKKD    GDD+ +K GILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCE
Sbjct: 61  LFGGKKD----GDDSSNKGGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCE 116

Query: 121 GELIKVTLSGNQQPVRTEITEAAMELGAE 149
           GEL+KVTLSGNQQP+RTEITEAAME G+E
Sbjct: 117 GELVKVTLSGNQQPLRTEITEAAMEFGSE 145

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223948417|gb|ACN28292.1| unknown [Zea mays] gi|413926357|gb|AFW66289.1| hypothetical protein ZEAMMB73_706905 [Zea mays]

 Score =  188 bits (478), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 94/144 (65%), Positives = 111/144 (77%), Gaps = 2/144 (1%)

Query: 6   AFTAQISSIHWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSLRVYGLFGGK 65
           A +A ++ + ++   S+   SN      N+ G   L  S+++++   +RS RVY LFGGK
Sbjct: 2   APSAALAPVAFRSAFSTPLASNPTRNRINIEGTFCLPCSARKRA--SYRSFRVYSLFGGK 59

Query: 66  KDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIK 125
           KD +E GD+APSKAGI GNMQNLYETVKKAQMVVQVEAVRVQKELAA E DGYCEGELIK
Sbjct: 60  KDKDENGDEAPSKAGIFGNMQNLYETVKKAQMVVQVEAVRVQKELAATEIDGYCEGELIK 119

Query: 126 VTLSGNQQPVRTEITEAAMELGAE 149
           VTLSGNQQP+R EITEAAMELGAE
Sbjct: 120 VTLSGNQQPIRVEITEAAMELGAE 143

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413935880|gb|AFW70431.1| hypothetical protein ZEAMMB73_296576 [Zea mays]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 94/149 (63%), Positives = 109/149 (73%), Gaps = 6/149 (4%)

Query: 1   MASTSAFTAQISSIHWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSLRVYG 60
           MA ++A         +  P +S    N +N+     G   L  S+++++   +R  RVY 
Sbjct: 80  MAPSTALAPVAFRSAFSTPLASKPTRNRMNIE----GAFCLPCSTRKRA--SYRPFRVYS 133

Query: 61  LFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCE 120
           LFGGKKD +E GD+APSKAGI GNMQNLYETVKKAQMVVQVEAVRVQKELAA E DGYCE
Sbjct: 134 LFGGKKDKDENGDEAPSKAGIFGNMQNLYETVKKAQMVVQVEAVRVQKELAATEIDGYCE 193

Query: 121 GELIKVTLSGNQQPVRTEITEAAMELGAE 149
           GELIKVTLSGNQQP+R EITEAAMELGAE
Sbjct: 194 GELIKVTLSGNQQPIRVEITEAAMELGAE 222

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507246|gb|AFK41689.1| unknown [Lotus japonicus]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 97/149 (65%), Positives = 110/149 (73%), Gaps = 4/149 (2%)

Query: 1   MASTSAFTAQISSIHWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSLRVYG 60
           MAST +    I        T SS     LN +S++   ++L  S  +K GH  R LR+YG
Sbjct: 1   MASTVSLPNAIGLCPRNNHTLSSTSHCKLNSSSSIVDMKILPQSGSRKVGHGQRHLRLYG 60

Query: 61  LFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCE 120
           LFGGKKD    GDD+P+K  ILGNMQNLYETVKKAQMVVQVEAVRVQKELAA EFDGYCE
Sbjct: 61  LFGGKKD----GDDSPNKGRILGNMQNLYETVKKAQMVVQVEAVRVQKELAATEFDGYCE 116

Query: 121 GELIKVTLSGNQQPVRTEITEAAMELGAE 149
           GEL+KVTLSGNQQP+RTEITEAAME G+E
Sbjct: 117 GELVKVTLSGNQQPLRTEITEAAMEFGSE 145

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226501168|ref|NP_001141299.1| uncharacterized protein LOC100273390 [Zea mays] gi|194703866|gb|ACF86017.1| unknown [Zea mays]

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 94/149 (63%), Positives = 109/149 (73%), Gaps = 6/149 (4%)

Query: 1   MASTSAFTAQISSIHWKKPTSSSNFSNNLNLNSNLAGKEMLSFSSQQKSGHQFRSLRVYG 60
           MA ++A         +  P +S    N +N+     G   L  S+++++   +R  RVY 
Sbjct: 1   MAPSTALAPVAFRSAFSTPLASKPTRNRMNIE----GAFCLPCSTRKRA--SYRPFRVYS 54

Query: 61  LFGGKKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCE 120
           LFGGKKD +E GD+APSKAGI GNMQNLYETVKKAQMVVQVEAVRVQKELAA E DGYCE
Sbjct: 55  LFGGKKDKDENGDEAPSKAGIFGNMQNLYETVKKAQMVVQVEAVRVQKELAATEIDGYCE 114

Query: 121 GELIKVTLSGNQQPVRTEITEAAMELGAE 149
           GELIKVTLSGNQQP+R EITEAAMELGAE
Sbjct: 115 GELIKVTLSGNQQPIRVEITEAAMELGAE 143

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
TAIR|locus:2118721	180	AT4G30620 "AT4G30620" [Arabido	0.707	0.616	0.730	1.6e-38
TAIR|locus:2061471	182	AT2G24020 "AT2G24020" [Arabido	0.675	0.582	0.770	2.6e-38

TAIR|locus:2118721 AT4G30620 "AT4G30620" [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 84/115 (73%), Positives = 100/115 (86%)

Query:    36 AGKEMLSFSSQQKSGHQFRSLRVYGLFGG-KKDNNEKGDDAPSKAGILGNMQNLYETVKK 94
             + ++ + + ++++SG+  RSLRV GLFGG KKDN E G    SKAGILGNMQNLYETVKK
Sbjct:    27 SSRQNIVWLNRKQSGNNNRSLRVNGLFGGGKKDNKEDGQ---SKAGILGNMQNLYETVKK 83

Query:    95 AQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAE 149
             AQMVVQVEAVRVQKELA AEFDGYC+GEL+KVTLSGNQQP+RT+IT+AAMELG+E
Sbjct:    84 AQMVVQVEAVRVQKELAVAEFDGYCQGELVKVTLSGNQQPIRTDITDAAMELGSE 138

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

TAIR|locus:2061471 AT2G24020 "AT2G24020" [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 84/109 (77%), Positives = 94/109 (86%)

Query:    42 SFSSQQKSGHQFRSLRVYGLFGG-KKDNNEKGDDAPSKAGILGNMQNLYETVKKAQMVVQ 100
             ++  Q KS + +RSLRV GLFGG  KDNN   +D  SKAGI GNMQN+YETVKKAQMVVQ
Sbjct:    33 TWPKQYKSKNGYRSLRVNGLFGGGNKDNNS--EDGQSKAGIFGNMQNMYETVKKAQMVVQ 90

Query:   101 VEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAE 149
             VEAVRVQKELAAAEFDGYC GEL+KVTLSGNQQP+RT+ITEAAMELG+E
Sbjct:    91 VEAVRVQKELAAAEFDGYCAGELVKVTLSGNQQPIRTDITEAAMELGSE 139


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.126   0.345    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      157       142   0.00091  102 3  11 23  0.50    31
                                                     30  0.47    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  573 (61 KB)
  Total size of DFA:  122 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.46u 0.17s 13.63t   Elapsed:  00:00:01
  Total cpu time:  13.46u 0.17s 13.63t   Elapsed:  00:00:01
  Start:  Sat May 11 07:00:37 2013   End:  Sat May 11 07:00:38 2013

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	157
PRK00153	104	PRK00153, PRK00153, hypothetical protein; Validate	6e-10
pfam02575	92	pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding fami	1e-09
COG0718	105	COG0718, COG0718, Uncharacterized protein conserve	7e-06
TIGR00103	101	TIGR00103, DNA_YbaB_EbfC, DNA-binding protein, Yba	1e-04

>gnl|CDD|234669 PRK00153, PRK00153, hypothetical protein; Validated

 Score = 52.9 bits (128), Expect = 6e-10
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 4/62 (6%)

Query: 83  GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
           GNMQNL   +K+AQ + Q +  ++Q+ELA  E +G   G L+KVT++G ++  R +I  +
Sbjct: 3   GNMQNL---MKQAQQM-QEKMQKMQEELAQMEVEGEAGGGLVKVTMTGKKEVKRVKIDPS 58

Query: 143 AM 144
            +
Sbjct: 59  LV 60

Length = 104

>gnl|CDD|217115 pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding family

 Score = 52.1 bits (126), Expect = 1e-09
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 93  KKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEV 150
           K+AQ + Q +  + Q+ELA  E +G   G L+KVT++G  +    EI    ++   E+
Sbjct: 2   KQAQQM-QEKMEKAQEELANKEVEGTSGGGLVKVTVNGKGEVKDVEIDPELLDEDKEM 58

This is a family of DNA-binding proteins. Members of this family form homodimers which bind DNA via a tweezer-like structure. The conformation of the DNA is changed when bound to these proteins. In bacteria, these proteins may play a role in DNA replication-recovery following DNA damage. Length = 92

>gnl|CDD|223790 COG0718, COG0718, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 42.2 bits (100), Expect = 7e-06
 Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 82  LGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITE 141
           +G M ++ + +K+AQ + Q +  ++Q+ELA  E  G   G L+ VT++G  +    EI  
Sbjct: 1   MGGMMDMQKLMKQAQQM-QKKMQKMQEELAQKEVTGKAGGGLVTVTINGKGEVKSVEIDP 59

Query: 142 AAME 145
           + ++
Sbjct: 60  SLLD 63

Length = 105

>gnl|CDD|211546 TIGR00103, DNA_YbaB_EbfC, DNA-binding protein, YbaB/EbfC family

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 86  QNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME 145
           +NL E +K+AQ + Q +  ++Q+E+A  E  G     L+KVT++GN +    EI  + +E
Sbjct: 4   KNLGELMKQAQQM-QEKMKKLQEEIAQFEVTGKSGAGLVKVTINGNLELKSIEIDPSLLE 62

Query: 146 LGAE 149
              E
Sbjct: 63  EDKE 66

The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium [Unknown function, General]. Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	157
PRK14624	115	hypothetical protein; Provisional	99.94
PRK14626	110	hypothetical protein; Provisional	99.93
PRK14625	109	hypothetical protein; Provisional	99.93
COG0718	105	Uncharacterized protein conserved in bacteria [Fun	99.92
PRK14627	100	hypothetical protein; Provisional	99.92
PRK14622	103	hypothetical protein; Provisional	99.92
PRK03762	103	hypothetical protein; Provisional	99.92
PRK14621	111	hypothetical protein; Provisional	99.91
PRK14623	106	hypothetical protein; Provisional	99.91
TIGR00103	102	DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC famil	99.91
PRK00587	99	hypothetical protein; Provisional	99.91
PRK14629	99	hypothetical protein; Provisional	99.9
PRK00153	104	hypothetical protein; Validated	99.9
PRK14628	118	hypothetical protein; Provisional	99.9
PF02575	93	YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPr	99.74
PRK14628	118	hypothetical protein; Provisional	92.8
PRK00153	104	hypothetical protein; Validated	83.78
PF10921	109	DUF2710: Protein of unknown function (DUF2710); In	83.6

>PRK14624 hypothetical protein; Provisional

Probab=99.94  E-value=8.1e-27  Score=177.95  Aligned_cols=75  Identities=15%  Similarity=0.217  Sum_probs=72.7

Q ss_pred             CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCccccc-CChhHHhhhhc
Q 031557           81 ILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME-LGAEVKTFTLS  156 (157)
Q Consensus        81 m~gnM~nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd-eD~EmLEDLI~  156 (157)
                      ||.+|+||++||||||+ ||++|+++|++|++++|+|+||||+|+||+||+++|++|+|||++++ +|+|+|||||.
T Consensus         1 ~~~~~~nm~~~mkqAq~-mQ~km~~~QeeL~~~~v~g~sGgG~VkV~~nG~~~i~~i~Idp~lld~eD~E~LeDLI~   76 (115)
T PRK14624          1 MFDKIKNMSEALSNMGN-IREKMEEVKKRIASIRVVGDAGAGMVTVTATGEGQITNVFINKQLFDADDNKMLEDLVM   76 (115)
T ss_pred             CcchHHhHHHHHHHHHH-HHHHHHHHHHHHhccEEEEEECCcEEEEEEEcCccEEEEEECHHHcCcccHHHHHHHHH
Confidence            67789999999999999 99999999999999999999999999999999999999999999998 78999999985

>PRK14626 hypothetical protein; Provisional

Probab=99.93  E-value=4.6e-26  Score=172.11  Aligned_cols=72  Identities=25%  Similarity=0.242  Sum_probs=69.8

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCccccc-CChhHHhhhhc
Q 031557           84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME-LGAEVKTFTLS  156 (157)
Q Consensus        84 nM~nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd-eD~EmLEDLI~  156 (157)
                      +|+||++||||||+ ||++|+++|+||++++|+|++|||+|+||+||+++|++|+|||++|+ +|+|+|||||.
T Consensus         3 ~~gn~~~mmkqaq~-mQ~km~~~qeeL~~~~v~g~sggG~VkV~~nG~~ev~~i~Id~~ll~~ed~e~LeDLI~   75 (110)
T PRK14626          3 NFGNLAELMKQMQS-IKENVEKAKEELKKEEIVVEVGGGMVKVVSNGLGEIKDVEIDKSLLNEDEYEVLKDLLI   75 (110)
T ss_pred             CcHhHHHHHHHHHH-HHHHHHHHHHHHhccEEEEEecCcEEEEEEECCccEEEEEECHHHcCcccHHHHHHHHH
Confidence            67899999999999 99999999999999999999999999999999999999999999998 78999999985

>PRK14625 hypothetical protein; Provisional

Probab=99.93  E-value=7.3e-26  Score=171.26  Aligned_cols=71  Identities=30%  Similarity=0.359  Sum_probs=68.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCccccc-CChhHHhhhhc
Q 031557           85 MQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME-LGAEVKTFTLS  156 (157)
Q Consensus        85 M~nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd-eD~EmLEDLI~  156 (157)
                      |+||++||||||+ ||++|+++|++|++++|+|+||||+|+||+||+++|++|+|||++|+ +|+|+|||||.
T Consensus         1 ~~nm~~mmkqaq~-mQ~km~~~Q~el~~~~v~g~sggG~VkV~~~G~~~v~~I~Idp~ll~~eD~e~LeDLI~   72 (109)
T PRK14625          1 MKDLGGLMKQAQA-MQQKLADAQARLAETTVEGTSGGGMVTVTLMGNGELVRVLMDESLVQPGEGEVIADLIV   72 (109)
T ss_pred             CccHHHHHHHHHH-HHHHHHHHHHHHhccEEEEEECCCeEEEEEecCceEEEEEECHHHcCCccHHHHHHHHH
Confidence            4689999999999 99999999999999999999999999999999999999999999999 78999999985

>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.92  E-value=1.7e-25  Score=168.68  Aligned_cols=72  Identities=26%  Similarity=0.366  Sum_probs=69.2

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCccccc-CChhHHhhhhc
Q 031557           84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME-LGAEVKTFTLS  156 (157)
Q Consensus        84 nM~nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd-eD~EmLEDLI~  156 (157)
                      .++||++|+||||+ ||++|+++|+||++++|+|++|||+|+|++||+++|++|+|||++++ +|+|+|||||.
T Consensus         3 ~~~~~~~l~kqaqq-mQ~~~~~~Q~ela~~ev~g~aggGlVtV~~~G~~ev~~v~Idp~l~dpeD~E~LeDLi~   75 (105)
T COG0718           3 GMMDMQKLMKQAQQ-MQKKMQKMQEELAQKEVTGKAGGGLVTVTINGKGEVKSVEIDPSLLDPEDKEMLEDLIL   75 (105)
T ss_pred             chhhHHHHHHHHHH-HHHHHHHHHHHHHhcEEeeecCCcEEEEEEeCCCcEEEEEeCHHHcCcccHHHHHHHHH
Confidence            45689999999999 99999999999999999999999999999999999999999999999 68999999985

>PRK14627 hypothetical protein; Provisional

Probab=99.92  E-value=2.1e-25  Score=165.86  Aligned_cols=69  Identities=26%  Similarity=0.308  Sum_probs=67.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCccccc-CChhHHhhhhc
Q 031557           87 NLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME-LGAEVKTFTLS  156 (157)
Q Consensus        87 nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd-eD~EmLEDLI~  156 (157)
                      ||++||||||+ ||++|+++|++|++++|+|+||||+|+||+||+++|++|+|||++|+ +|+|+|||||.
T Consensus         2 n~~~~mkqaq~-mQ~km~~~Q~el~~~~veg~sggG~VkV~~~G~~~v~~i~Idp~ll~~ed~e~LeDLI~   71 (100)
T PRK14627          2 NQRQLMQMAQQ-MQRQMQKVQEELAATIVEGTAGGGAITVKMNGHREVQSITISPEVVDPDDVEMLQDLLL   71 (100)
T ss_pred             CHHHHHHHHHH-HHHHHHHHHHHHhccEEEEEEcCCeEEEEEEcCccEEEEEECHHHcCcccHHHHHHHHH
Confidence            88999999999 99999999999999999999999999999999999999999999998 78999999985

>PRK14622 hypothetical protein; Provisional

Probab=99.92  E-value=3e-25  Score=165.92  Aligned_cols=69  Identities=14%  Similarity=0.255  Sum_probs=67.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCccccc-CChhHHhhhhc
Q 031557           87 NLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME-LGAEVKTFTLS  156 (157)
Q Consensus        87 nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd-eD~EmLEDLI~  156 (157)
                      ||++||||||+ ||++|+++|++|++++|+|++|||+|+||+||+++|++|+|||++|+ +|+|+|||||.
T Consensus         2 ~~~~lmkqaq~-mQ~~m~~~q~el~~~~v~g~sggG~VkV~~nG~~~v~~i~Idp~~l~~ed~e~LeDLI~   71 (103)
T PRK14622          2 DIQYLMRQAKK-LEKAMADAKEKLAEIAVEAESGGGLVKVAMNGKCEVTRLTVDPKAVDPNDKAMLEDLVT   71 (103)
T ss_pred             CHHHHHHHHHH-HHHHHHHHHHHHhccEEEEEECCceEEEEEEcCceEEEEEECHHHcCcccHHHHHHHHH
Confidence            68999999999 99999999999999999999999999999999999999999999998 79999999985

>PRK03762 hypothetical protein; Provisional

Probab=99.92  E-value=6.2e-25  Score=164.69  Aligned_cols=73  Identities=22%  Similarity=0.333  Sum_probs=69.4

Q ss_pred             CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCcccccCChhHHhhhhc
Q 031557           81 ILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEVKTFTLS  156 (157)
Q Consensus        81 m~gnM~nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLdeD~EmLEDLI~  156 (157)
                      ||.+| ||++|++|||+ ||++|+++|++|++++|+|++|||+|+||+||+++|++|+|||++|+ |+|+|||||.
T Consensus         1 ~~~~m-~~~~m~kqaqk-mQ~km~~~Q~el~~~~v~g~sggGlVkV~~nG~~~i~~i~Id~~ll~-D~e~LeDLI~   73 (103)
T PRK03762          1 MFENM-DFSKLGEMLEQ-MQKKAKQLEEENANKEFTAKSGGGLVSVSANGKGEVIDISIDDSLLE-DKESLQILLI   73 (103)
T ss_pred             CCCCC-CHHHHHHHHHH-HHHHHHHHHHHHhccEEEEEEcCceEEEEEEcCceEEEEEECHHHcC-CHHHHHHHHH
Confidence            56666 89999999999 99999999999999999999999999999999999999999999994 9999999985

>PRK14621 hypothetical protein; Provisional

Probab=99.91  E-value=1.2e-24  Score=164.79  Aligned_cols=70  Identities=24%  Similarity=0.304  Sum_probs=67.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCcccccCChhHHhhhhc
Q 031557           85 MQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEVKTFTLS  156 (157)
Q Consensus        85 M~nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLdeD~EmLEDLI~  156 (157)
                      |+||++||||||+ ||++|+++|++|++++|+|+||||+|+||+||+++|++|+|||++++ |+|+|||||.
T Consensus         3 ~~nm~~mmkqaq~-mQ~km~~~Q~eL~~~~v~g~sGgG~VkV~~~G~~~i~~i~Idp~lld-D~e~LeDLI~   72 (111)
T PRK14621          3 MPNLGDMMKQIQQ-AGEKMQDVQKQLEKLVAHGEAGGGMVKASVNGKQKLLSLAIDPEIMD-DVEMVQDLVV   72 (111)
T ss_pred             chhHHHHHHHHHH-HHHHHHHHHHHHHccEEEEEECCceEEEEEEcCceEEEEEECHHHcC-CHHHHHHHHH
Confidence            4689999999999 99999999999999999999999999999999999999999999996 9999999984

>PRK14623 hypothetical protein; Provisional

Probab=99.91  E-value=1.2e-24  Score=164.03  Aligned_cols=68  Identities=21%  Similarity=0.222  Sum_probs=66.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCcccccCChhHHhhhhc
Q 031557           87 NLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEVKTFTLS  156 (157)
Q Consensus        87 nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLdeD~EmLEDLI~  156 (157)
                      ||++||||||+ ||++|+++|++|++++|+|+||||+|+||+||+++|++|+|||++|+ |+|+|||||.
T Consensus         2 ~~~~~mkqaqk-mQ~km~~~Qeel~~~~v~g~sggG~VkVt~~G~~~i~~i~Idp~~l~-D~E~LeDLI~   69 (106)
T PRK14623          2 DMMGMMGKLKE-AQQKVEATKKRLDTVLIDEQSSDGLLKVTVTANREIKSISIDDELLE-DKEQLEDYLV   69 (106)
T ss_pred             CHHHHHHHHHH-HHHHHHHHHHHHhccEEEEEECCceEEEEEEcCccEEEEEECHHHcC-CHHHHHHHHH
Confidence            68899999999 99999999999999999999999999999999999999999999995 9999999985

>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family

Probab=99.91  E-value=2.5e-24  Score=159.91  Aligned_cols=72  Identities=29%  Similarity=0.331  Sum_probs=69.5

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCcccccCChhHHhhhhc
Q 031557           84 NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEVKTFTLS  156 (157)
Q Consensus        84 nM~nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLdeD~EmLEDLI~  156 (157)
                      +|+||++||+|||+ ||++|+++|++|++++|+|++|||+|+||+||+++|++|+|||+++++|+|+|||||.
T Consensus         3 ~~~n~~~m~kqaq~-mQ~k~~~~q~eL~~~~v~g~sggGlV~V~~~G~~~v~~v~Id~~~l~~d~e~LedlI~   74 (102)
T TIGR00103         3 GKGNLGELMKQAQQ-MQEKMKKLQEEIAQFEVTGKSGAGLVTVTINGNLELKSIEIDPSLLEEDKEALEDMIT   74 (102)
T ss_pred             ChhhHHHHHHHHHH-HHHHHHHHHHHHhccEEEEEECCCEEEEEEEcCceEEEEEECHHHHhCCHHHHHHHHH
Confidence            46799999999999 9999999999999999999999999999999999999999999999989999999985

The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.

>PRK00587 hypothetical protein; Provisional

Probab=99.91  E-value=2.2e-24  Score=160.85  Aligned_cols=68  Identities=22%  Similarity=0.246  Sum_probs=66.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCccccc-CChhHHhhhhc
Q 031557           87 NLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME-LGAEVKTFTLS  156 (157)
Q Consensus        87 nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd-eD~EmLEDLI~  156 (157)
                      ||++||||||+ ||++|+++|++|++++|+|++ ||+|+||+||+++|++|+|||++|+ +|+|+|||||.
T Consensus         2 ~~~~lmkqaqk-mQ~km~~~QeeL~~~~v~g~~-gGlVkV~~nG~~~i~~i~Idp~lld~eD~E~LeDLI~   70 (99)
T PRK00587          2 NFQKLAQQLKK-MQNTMEKKQKEFEEKEFDFDY-KKYILIKIKGNLNIEKIEINKELIDPEDKETLQDMLR   70 (99)
T ss_pred             CHHHHHHHHHH-HHHHHHHHHHHHhccEEEEEc-CCeEEEEEEcCccEEEEEECHHHcCCccHHHHHHHHH
Confidence            68899999999 999999999999999999998 9999999999999999999999998 79999999985

>PRK14629 hypothetical protein; Provisional

Probab=99.90  E-value=7.2e-24  Score=158.15  Aligned_cols=68  Identities=15%  Similarity=0.235  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCccccc-CChhHHhhhhc
Q 031557           88 LYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME-LGAEVKTFTLS  156 (157)
Q Consensus        88 m~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd-eD~EmLEDLI~  156 (157)
                      --+||||||+ ||++|+++|++|++++|+|++|||+|+|++||+++|++|+|||++|+ +|+|+|||||.
T Consensus         5 ~~~~mkqaq~-mQ~km~~~Q~eL~~~~veg~aggGlVkV~~nG~~~v~~i~Idp~lld~eD~e~LeDLI~   73 (99)
T PRK14629          5 PLDFLKNMSS-FKDNIDNIKKEISQIVVCGRAGSDVVVVEMNGEFNVKKVSIKEEFFDDLDNEALEHMIK   73 (99)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHhccEEEEEecCCEEEEEEEcCccEEEEEECHHHcCcccHHHHHHHHH
Confidence            3479999999 99999999999999999999999999999999999999999999999 78999999984

>PRK00153 hypothetical protein; Validated

Probab=99.90  E-value=2.1e-23  Score=154.30  Aligned_cols=71  Identities=30%  Similarity=0.420  Sum_probs=68.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCccccc-CChhHHhhhhc
Q 031557           85 MQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME-LGAEVKTFTLS  156 (157)
Q Consensus        85 M~nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd-eD~EmLEDLI~  156 (157)
                      |+||++||+|||+ ||++++++|++|++++|+|+|+||+|+||+||+++|++|+|||++++ +|+|+|+|||.
T Consensus         2 ~~~~~~m~~qaq~-~q~~~~~~q~~l~~~~~~~~s~~G~V~V~v~G~~~v~~i~Id~~ll~~~d~e~LedlI~   73 (104)
T PRK00153          2 MGNMQNLMKQAQQ-MQEKMQKMQEELAQMEVEGEAGGGLVKVTMTGKKEVKRVKIDPSLVDPEDVEMLEDLIL   73 (104)
T ss_pred             cccHHHHHHHHHH-HHHHHHHHHHHHhccEEEEEECCCeEEEEEecCceEEEEEECHHHcCCcCHHHHHHHHH
Confidence            4688999999999 99999999999999999999999999999999999999999999997 89999999985

>PRK14628 hypothetical protein; Provisional

Probab=99.90  E-value=2.7e-23  Score=159.05  Aligned_cols=71  Identities=15%  Similarity=0.188  Sum_probs=65.8

Q ss_pred             Chhh-HHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCcccccCChhHHhhhhc
Q 031557           84 NMQN-LYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEVKTFTLS  156 (157)
Q Consensus        84 nM~n-m~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLdeD~EmLEDLI~  156 (157)
                      +|++ |.+++|++|+ ||++++++|++|++++|+|+||||+|+||+||+++|++|+|||++++ |+|+|||||.
T Consensus        16 ~~~~lm~q~~k~qq~-mq~k~~elqe~l~~~~v~g~sggG~VkV~~nG~~ei~~I~Idp~~l~-D~E~LeDLIi   87 (118)
T PRK14628         16 KQEKLLKDFAKMQEE-LQKKIQELEESFSQIEVEASVGGGAVRIVATCDRRVKDIEIDEDLKE-DFETLKDLLI   87 (118)
T ss_pred             hHHHHHHHHHHHHHH-HHHHHHHHHHHHHceEEEEEecCceEEEEEEcCceEEEEEECHHHcC-CHHHHHHHHH
Confidence            4555 6778888888 99999999999999999999999999999999999999999999995 9999999985

>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown

Probab=99.74  E-value=1e-17  Score=119.68  Aligned_cols=64  Identities=33%  Similarity=0.378  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCccccc-CChhHHhhhhc
Q 031557           92 VKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME-LGAEVKTFTLS  156 (157)
Q Consensus        92 mKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd-eD~EmLEDLI~  156 (157)
                      |+|+|+ ||++++++|++|++++|+|++++|+|+||+||+++|++|+|||++++ .|++.|+|+|.
T Consensus         1 m~~~~~-~~~~~~~~~~~l~~~~~~~~s~~g~V~V~v~g~g~v~~i~i~~~~~~~~~~~~L~~~I~   65 (93)
T PF02575_consen    1 MKQAQE-MQEKMEEAQEELAEIEVTGTSGDGLVTVTVNGNGEVVDIEIDPSALRPLDPEELEDLIV   65 (93)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHSEEEEEETCCTEEEEEETTS-EEEEEE-GGGGCTS-HHHHHHHHH
T ss_pred             ChHHHH-HHHHHHHHHHHHhcCEEEEEECCCEEEEEEecCceEEEEEEehHhhccCCHHHHHHHHH
Confidence            689999 99999999999999999999999999999999999999999999999 89999999984

It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.

>PRK14628 hypothetical protein; Provisional

Probab=92.80  E-value=0.33  Score=37.50  Aligned_cols=61  Identities=18%  Similarity=0.096  Sum_probs=41.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEe--Cccccc--CChhHHhh
Q 031557           85 MQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEI--TEAAME--LGAEVKTF  153 (157)
Q Consensus        85 M~nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~I--DpelLd--eD~EmLED  153 (157)
                      .++|.+||+|||+ ||++|++.++++.+.--.       .+|+.+.-+-.+.|.+  +-++++  -|++.|+|
T Consensus        14 ~g~~~~lm~q~~k-~qq~mq~k~~elqe~l~~-------~~v~g~sggG~VkV~~nG~~ei~~I~Idp~~l~D   78 (118)
T PRK14628         14 GGKQEKLLKDFAK-MQEELQKKIQELEESFSQ-------IEVEASVGGGAVRIVATCDRRVKDIEIDEDLKED   78 (118)
T ss_pred             chhHHHHHHHHHH-HHHHHHHHHHHHHHHHHc-------eEEEEEecCceEEEEEEcCceEEEEEECHHHcCC
Confidence            5677888999999 899888888888764332       3444444456777777  445665  36777654

>PRK00153 hypothetical protein; Validated

Probab=83.78  E-value=3.4  Score=30.45  Aligned_cols=61  Identities=23%  Similarity=0.242  Sum_probs=35.8

Q ss_pred             CCChhhHHHHHHHHHHH---HHHHHHHHHHHHh----ccEEEEEecCCeEEEEEeecceeEEEEeCccccc
Q 031557           82 LGNMQNLYETVKKAQMV---VQVEAVRVQKELA----AAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME  145 (157)
Q Consensus        82 ~gnM~nm~emmKQAQk~---MQ~km~k~QeEL~----~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd  145 (157)
                      ++||.+|.+-++++|+-   +|+++.++.=+-+    .++|+....+..+.|+|+=.  +.+ .-|++.|.
T Consensus         2 ~~~~~~m~~qaq~~q~~~~~~q~~l~~~~~~~~s~~G~V~V~v~G~~~v~~i~Id~~--ll~-~~d~e~Le   69 (104)
T PRK00153          2 MGNMQNLMKQAQQMQEKMQKMQEELAQMEVEGEAGGGLVKVTMTGKKEVKRVKIDPS--LVD-PEDVEMLE   69 (104)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCeEEEEEecCceEEEEEECHH--HcC-CcCHHHHH
Confidence            45666655554444443   5666555543333    37777888888899999743  221 23777664

>PF10921 DUF2710: Protein of unknown function (DUF2710); InterPro: IPR024296 This family of uncharacterised proteins appears to be restricted to Mycobacteriaceae

Probab=83.60  E-value=18  Score=27.85  Aligned_cols=63  Identities=5%  Similarity=-0.010  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCcccccC-ChhHHhhhh
Q 031557           90 ETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMEL-GAEVKTFTL  155 (157)
Q Consensus        90 emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLde-D~EmLEDLI  155 (157)
                      ..++...+ .-.+.+++-+|.+.++++.  +-|-|..++|-+++++++.+.|-++.. .--.|.|+|
T Consensus        22 sVlr~lse-aa~kweaLvaeae~itysv--dlGDv~avaNSdGrL~~LtLhpgv~t~YshgeLaerl   85 (109)
T PF10921_consen   22 SVLRELSE-AADKWEALVAEAETITYSV--DLGDVRAVANSDGRLLELTLHPGVMTGYSHGELAERL   85 (109)
T ss_pred             HHHHHHHH-HHHHHHHHHHHhhcceeec--cCCcEEEEecCCCcEEEEEeccchhcCcchHHHHHHH
Confidence            34566666 6677888888888888876  677799999999999999999999962 244455544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	157
1ybx_A	143	Conserved hypothetical protein; ST genomics, PSI,	2e-06
1j8b_A	112	YBAB; hypothetical protein, structural genomics, s	6e-06
3f42_A	99	Protein HP0035; helicobacter pylori unknown-functi	2e-05

>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum} Length = 143

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 80  GILGNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEI 139
           G  GN+ NL   VK+AQ + Q +  RVQ+EL     +    G  + V  +G +      I
Sbjct: 38  GFGGNINNL---VKQAQKM-QRDMERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITI 93

Query: 140 TEAAME 145
               ++
Sbjct: 94  KPEVVD 99

>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A Length = 112

 Score = 41.9 bits (99), Expect = 6e-06
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 83  GNMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEA 142
           G +  L   +K+AQ + Q +  ++Q+E+A  E  G     L+K+T++G     R +I  +
Sbjct: 8   GGLGGL---MKQAQQM-QEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPS 63

Query: 143 AME 145
            ME
Sbjct: 64  LME 66

>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, P protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori} Length = 99

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 8/62 (12%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 84  NMQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAA 143
           +   L         + + E  +++++           G ++ V+ +G  + V  +I ++ 
Sbjct: 4   DFSQL---GGLLDGM-KKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSL 59

Query: 144 ME 145
           +E
Sbjct: 60  LE 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	157
1ybx_A	143	Conserved hypothetical protein; ST genomics, PSI,	99.93
1j8b_A	112	YBAB; hypothetical protein, structural genomics, s	99.92
3f42_A	99	Protein HP0035; helicobacter pylori unknown-functi	99.89
1ybx_A	143	Conserved hypothetical protein; ST genomics, PSI,	83.18

>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}

Probab=99.93  E-value=2.6e-26  Score=179.65  Aligned_cols=76  Identities=22%  Similarity=0.246  Sum_probs=66.7

Q ss_pred             CCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCccccc-CChhHHhhhhc
Q 031557           80 GILGN-MQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAME-LGAEVKTFTLS  156 (157)
Q Consensus        80 Gm~gn-M~nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLd-eD~EmLEDLI~  156 (157)
                      |+|+| |+||++||||||+ ||++|+++|+||++++|+|+||||+|+||+||+++|++|+|||++++ +|+|+|||||.
T Consensus        34 ~~~~~m~gnm~~mmkQAQk-mQ~km~k~QeeL~~~eveg~sGgGlVkVtvnG~~ev~~I~Idp~lldpeD~E~LeDLI~  111 (143)
T 1ybx_A           34 GGFPGFGGNINNLVKQAQK-MQRDMERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVEMLQDLIL  111 (143)
T ss_dssp             ---------CHHHHHHHHH-HHHHHHHHHHHHHHCEEEEEETTTTEEEEEETTCCEEEEEECGGGCCTTCHHHHHHHHH
T ss_pred             cCCcccchhHHHHHHHHHH-HHHHHHHHHHHHhcCEEEEEECCCEEEEEEecCceEEEEEECHHHcCCcCHHHHHHHHH
Confidence            33444 3689999999999 99999999999999999999999999999999999999999999999 89999999984

>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A

Probab=99.92  E-value=6e-26  Score=170.30  Aligned_cols=70  Identities=27%  Similarity=0.330  Sum_probs=66.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCcccccCChhHHhhhhc
Q 031557           86 QNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEVKTFTLS  156 (157)
Q Consensus        86 ~nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLdeD~EmLEDLI~  156 (157)
                      +||++||||||+ ||++|+++|++|++++|+|+||||+|+||+||+++|++|+|||+++++|+|+|||||.
T Consensus         8 gnm~~mmkqaq~-mQ~~m~~~QeeL~~~~v~g~sggG~V~Vt~~G~~ev~~i~Idp~~~~~d~E~LedlI~   77 (112)
T 1j8b_A            8 GGLGGLMKQAQQ-MQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLMEDDKEMLEDLIA   77 (112)
T ss_dssp             --CCCHHHHHHH-HHHHHHHHHHHHTTSEEEEEEGGGTEEEEEETTCCEEEEEECGGGGGSCHHHHHHHHH
T ss_pred             cCHHHHHHHHHH-HHHHHHHHHHHHhccEEEEEECCCEEEEEEecCceEEEEEECHHHHhCCHHHHHHHHH
Confidence            366788999999 9999999999999999999999999999999999999999999999989999999984

>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, P protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}

Probab=99.89  E-value=1.4e-23  Score=155.10  Aligned_cols=67  Identities=13%  Similarity=0.180  Sum_probs=63.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCcccccCChhHHhhhhc
Q 031557           85 MQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEVKTFTLS  156 (157)
Q Consensus        85 M~nm~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLdeD~EmLEDLI~  156 (157)
                      .+||++||   |+ ||++|+++|++|++++|+|+||||+|+||+||+++|++|+|||+++ +|+|+|||||.
T Consensus         5 ~gnm~~lm---q~-mQ~~m~~~QeeL~~~~v~g~sggG~V~Vt~~G~~ev~~i~Idp~~~-eD~E~LeDLI~   71 (99)
T 3f42_A            5 FSQLGGLL---DG-MKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLL-EDKEAMQIYLM   71 (99)
T ss_dssp             HHHHHHHH---HH-HHHHHHHHHHHHHTCEEEEEEGGGTEEEEEETTSCEEEEEECGGGG-GCHHHHHHHHH
T ss_pred             chhHHHHH---HH-HHHHHHHHHHHHhcCEEEEEECCCEEEEEEecCceEEEEEECHHHh-CCHHHHHHHHH
Confidence            36788888   77 9999999999999999999999999999999999999999999999 89999999985

>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}

Probab=83.18  E-value=2.5  Score=32.61  Aligned_cols=48  Identities=25%  Similarity=0.252  Sum_probs=27.6

Q ss_pred             CChhhHHHHHHHHHHH---HHHHHHHHHHHHh----ccEEEEEecCCeEEEEEee
Q 031557           83 GNMQNLYETVKKAQMV---VQVEAVRVQKELA----AAEFDGYCEGELIKVTLSG  130 (157)
Q Consensus        83 gnM~nm~emmKQAQk~---MQ~km~k~QeEL~----~~eveGssGGGlVkVt~nG  130 (157)
                      +||.+|.+-++++|+-   +|++++++.=+-.    -++|+....+..+.|+|+=
T Consensus        41 gnm~~mmkQAQkmQ~km~k~QeeL~~~eveg~sGgGlVkVtvnG~~ev~~I~Idp   95 (143)
T 1ybx_A           41 GNINNLVKQAQKMQRDMERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKP   95 (143)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHCEEEEEETTTTEEEEEETTCCEEEEEECG
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcCEEEEEECCCEEEEEEecCceEEEEEECH
Confidence            4665555544444443   5555554432222    3678888888899999954

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	157
d1j8ba_	92	d.222.1.1 (A:) Hypothetical protein HI0442 {Haemop	5e-07

>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus influenzae [TaxId: 727]} Length = 92

class: Alpha and beta proteins (a+b)
fold: YbaB-like
superfamily: YbaB-like
family: YbaB-like
domain: Hypothetical protein HI0442
species: Haemophilus influenzae [TaxId: 727]

 Score = 43.5 bits (103), Expect = 5e-07
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 85  MQNLYETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAM 144
           +  L   +K+AQ + Q +  ++Q+E+A  E  G     L+K+T++G     R +I  + M
Sbjct: 1   LGGL---MKQAQQM-QEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLM 56

Query: 145 ELGAEV 150
           E   E+
Sbjct: 57  EDDKEM 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	157
d1j8ba_	92	Hypothetical protein HI0442 {Haemophilus influenza	99.9

>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: YbaB-like
superfamily: YbaB-like
family: YbaB-like
domain: Hypothetical protein HI0442
species: Haemophilus influenzae [TaxId: 727]

Probab=99.90  E-value=2.3e-24  Score=154.31  Aligned_cols=67  Identities=27%  Similarity=0.327  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccEEEEEecCCeEEEEEeecceeEEEEeCcccccCChhHHhhhhc
Q 031557           89 YETVKKAQMVVQVEAVRVQKELAAAEFDGYCEGELIKVTLSGNQQPVRTEITEAAMELGAEVKTFTLS  156 (157)
Q Consensus        89 ~emmKQAQk~MQ~km~k~QeEL~~~eveGssGGGlVkVt~nG~~eI~~I~IDpelLdeD~EmLEDLI~  156 (157)
                      .+||||||+ ||++|+++|++|++++|+|++|||+|+||+||+++|++|+|||+++++|+|+|||||.
T Consensus         2 ~~mmkqaq~-mq~~m~~~q~eL~~~~v~~~sg~g~V~V~~~G~~~v~~i~Id~~~l~~d~e~LedlI~   68 (92)
T d1j8ba_           2 GGLMKQAQQ-MQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLMEDDKEMLEDLIA   68 (92)
T ss_dssp             CCHHHHHHH-HHHHHHHHHHHHTTSEEEEEEGGGTEEEEEETTCCEEEEEECGGGGGSCHHHHHHHHH
T ss_pred             hHHHHHHHH-HHHHHHHHHHHHhCeEEEEEECCCEEEEEEECCeEEEEEEECHHHhcCcHHHHHHHHH
Confidence            468999999 9999999999999999999999999999999999999999999999889999999984