Citrus Sinensis ID: 031571

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
Protein Sequence
MVVTLQTLILTPRPSKMLSSWHRNSHFRASGSLRFSPFVTFSPGRSISRPIRACRPSDQDFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLCSSQFCYLLHTFQS
Secondary Structure (PSIPRED)
cccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccHHccccccEEEEEEEEEcccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEcccccccccHHHccccccEEEEEEccccEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHcHccHcHHcEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MVVTLQTliltprpskmlsswhrnshfrasgslrfspfvtfspgrsisrpiracrpsdqdfasskglnwakPLLKIAADNFLPLALIGGvafgfanpslgcladkyqlskfsTFAIFIVSGLtlrsgeigaaaeawpvgifGLCSSQFCYLLHTFQS
Flexible Loop (DISEMBL)
mvvtlqtliltprpskmlssWHRNSHFrasgslrfspFVTFspgrsisrpiracRPSDQDFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLCSSQFCYLLHTFQS
Low Complexity Region (SEG)
MVVTLQTLILTPRPSKMLSSWHRNSHFRASGSLRFSPFVTFSPGRSISRPIRACRPSDQDFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLCSSQFCYLLHTFQS
Disordered region (IsUnstruct)
******TLIL**********************LRFSPFVTF***********************KGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLCSSQFCYLLHTF**
Disordered Region (DISOPRED)
******T*ILT*****************ASGSLRFSPFV*********************************LLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLCSSQFCYLLHTFQ*
Disordered Region (DISEMBL)
MVVTLQTLILTPRPSKMLSSWHRNSHFRASGSLRFSPFVTFSPGRSISRPIRACRPSDQDFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLCSSQFCYLLHTFQS
Disordered Region (DISPRO)
MVVTLQTLILTPRPSKMLSSWHRNSHFRASGSLRFSPFVTFSPGRSISRPIRACRPSDQDFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLCSSQFCYLLHTFQS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVVTLQTLILTPRPSKMLSSWHRNSHFRASGSLRFSPFVTFSPGRSISRPIRACRPSDQDFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLCSSQFCYLLHTFQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	157	2.2.26 [Sep-21-2011]
F4IZC4	436	Probable sodium/metabolit	yes	no	0.643	0.231	0.492	3e-26
Q6ESG1	423	Probable sodium/metabolit	yes	no	0.439	0.163	0.666	3e-21
B8AJ09	423	Probable sodium/metabolit	N/A	no	0.439	0.163	0.666	3e-21

>sp|F4IZC4|BASS4_ARATH Probable sodium/metabolite cotransporter BASS4, chloroplastic OS=Arabidopsis thaliana GN=BASS4 PE=3 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/134 (49%), Positives = 80/134 (59%), Gaps = 33/134 (24%)

Query: 45  RSISRPIRACRPSDQ-------DF--------------------------ASSKGLNWAK 71
           R ISR IRAC+PSD+       DF                          AS++ L + K
Sbjct: 40  RWISRSIRACQPSDKVSGQFPFDFMYSSMLIPSSCGEWNRIHLGGDGGISASAQRLYFGK 99

Query: 72  PLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGA 131
            LL  A+DNFLPLAL+ GV  GFANP+LGCLADKY  +K ST  IFI+SGLTLR+  IGA
Sbjct: 100 ELLSFASDNFLPLALVSGVGLGFANPTLGCLADKYSFTKISTCGIFIISGLTLRTEAIGA 159

Query: 132 AAEAWPVGIFGLCS 145
           A + WP+G+FGL S
Sbjct: 160 AVKGWPLGLFGLIS 173

May function as sodium-coupled metabolite transporter across the chloroplast envelope.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6ESG1|BASS4_ORYSJ Probable sodium/metabolite cotransporter BASS4, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS4 PE=3 SV=1

 Score =  100 bits (250), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 46/69 (66%), Positives = 55/69 (79%)

Query: 77  AADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAW 136
           A  NFLPLALI G+A    +P+LGCLA KY LSK+STF IF++SGLTLR+ E+GAA EAW
Sbjct: 92  ARSNFLPLALIAGIALALMDPTLGCLAHKYSLSKYSTFGIFLISGLTLRTKELGAALEAW 151

Query: 137 PVGIFGLCS 145
           P G+FGL S
Sbjct: 152 PAGLFGLAS 160

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|B8AJ09|BASS4_ORYSI Probable sodium/metabolite cotransporter BASS4, chloroplastic OS=Oryza sativa subsp. indica GN=BASS4 PE=3 SV=1

 Score =  100 bits (250), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 46/69 (66%), Positives = 55/69 (79%)

Query: 77  AADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAW 136
           A  NFLPLALI G+A    +P+LGCLA KY LSK+STF IF++SGLTLR+ E+GAA EAW
Sbjct: 92  ARSNFLPLALIAGIALALMDPTLGCLAHKYSLSKYSTFGIFLISGLTLRTKELGAALEAW 151

Query: 137 PVGIFGLCS 145
           P G+FGL S
Sbjct: 152 PAGLFGLAS 160

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
296087978	448	unnamed protein product [Vitis vinifera]	0.923	0.323	0.538	3e-30
225464144	419	PREDICTED: sodium/bile acid cotransporte	0.923	0.346	0.538	3e-30
255568038	423	bile acid:sodium symporter, putative [Ri	0.910	0.338	0.506	8e-30
7572914	341	putative protein [Arabidopsis thaliana]	0.643	0.296	0.598	8e-27
224100629	264	predicted protein [Populus trichocarpa]	0.477	0.284	0.773	8e-26
449468358	428	PREDICTED: probable sodium/metabolite co	0.770	0.282	0.496	4e-25
356534671	426	PREDICTED: sodium/bile acid cotransporte	0.840	0.309	0.453	6e-25
42565967	436	Sodium bile acid symporter family protei	0.643	0.231	0.492	2e-24
305682289	429	putative plastid localized membrane prot	0.522	0.191	0.707	7e-24
297820376	420	bile acid:sodium symporter [Arabidopsis	0.643	0.240	0.5	3e-23

>gi|296087978|emb|CBI35261.3| unnamed protein product [Vitis vinifera]

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/154 (53%), Positives = 95/154 (61%), Gaps = 9/154 (5%)

Query: 1   MVVTLQTLILTPRPSKML---SSWHRNSHFRASGSLRFSPFVTFSPGRSISRPIRACRPS 57
           M   +QTLIL P   K L   +    N+      + + S  +      S S PI A + S
Sbjct: 1   MAAIIQTLILRPPHPKTLPHPTPITSNAIRFCISTHKCSLLLRKPHSVSKSFPITAAQHS 60

Query: 58  ------DQDFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKF 111
                  Q  +S K L WAKPLL   ADNFLPLAL+ GVA G ANP+LGCLAD+Y LSK 
Sbjct: 61  AQGDDASQAASSGKALIWAKPLLSFVADNFLPLALVSGVALGLANPTLGCLADRYSLSKV 120

Query: 112 STFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLCS 145
           STF IFI+SGL LRSGEIGAAAEAWPVGIFGL S
Sbjct: 121 STFGIFIISGLMLRSGEIGAAAEAWPVGIFGLGS 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464144|ref|XP_002266805.1| PREDICTED: sodium/bile acid cotransporter 7-like [Vitis vinifera]

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/154 (53%), Positives = 95/154 (61%), Gaps = 9/154 (5%)

Query: 1   MVVTLQTLILTPRPSKML---SSWHRNSHFRASGSLRFSPFVTFSPGRSISRPIRACRPS 57
           M   +QTLIL P   K L   +    N+      + + S  +      S S PI A + S
Sbjct: 1   MAAIIQTLILRPPHPKTLPHPTPITSNAIRFCISTHKCSLLLRKPHSVSKSFPITAAQHS 60

Query: 58  ------DQDFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKF 111
                  Q  +S K L WAKPLL   ADNFLPLAL+ GVA G ANP+LGCLAD+Y LSK 
Sbjct: 61  AQGDDASQAASSGKALIWAKPLLSFVADNFLPLALVSGVALGLANPTLGCLADRYSLSKV 120

Query: 112 STFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLCS 145
           STF IFI+SGL LRSGEIGAAAEAWPVGIFGL S
Sbjct: 121 STFGIFIISGLMLRSGEIGAAAEAWPVGIFGLGS 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568038|ref|XP_002524996.1| bile acid:sodium symporter, putative [Ricinus communis] gi|223535740|gb|EEF37403.1| bile acid:sodium symporter, putative [Ricinus communis]

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 77/152 (50%), Positives = 98/152 (64%), Gaps = 9/152 (5%)

Query: 1   MVVTLQTLILTPRPSKMLSSWHRNSHFRASGSLRFSPFVTFSPGRSISRPIR--ACRPSD 58
           M   +Q+LIL+PR  +  S   R+ +FR+      +P+ +    R +  PI+  AC+  D
Sbjct: 1   MAGIVQSLILSPRSLQPPSIQQRHPNFRSI----CNPY-SLKRTRCVPSPIKIKACQQPD 55

Query: 59  QDFASSKGLN--WAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAI 116
           Q  +   GL   W++PL     +NFLP+ALIGGV  G ANPSLGCLADK  LSK STF I
Sbjct: 56  QGDSKVSGLANVWSQPLFSFVENNFLPMALIGGVVVGLANPSLGCLADKCYLSKVSTFGI 115

Query: 117 FIVSGLTLRSGEIGAAAEAWPVGIFGLCSSQF 148
           F +SGLTLR+GEIGAA EAW VG+FGLCS  F
Sbjct: 116 FFISGLTLRNGEIGAALEAWLVGVFGLCSILF 147

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7572914|emb|CAB87415.1| putative protein [Arabidopsis thaliana]

 Score =  125 bits (313), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 78/107 (72%), Gaps = 6/107 (5%)

Query: 45  RSISRPIRACRPSDQ------DFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPS 98
           R ISR IRAC+PSD+        AS++ L + K LL  A+DNFLPLAL+ GV  GFANP+
Sbjct: 40  RWISRSIRACQPSDKLGGDGGISASAQRLYFGKELLSFASDNFLPLALVSGVGLGFANPT 99

Query: 99  LGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLCS 145
           LGCLADKY  +K ST  IFI+SGLTLR+  IGAA + WP+G+FGL S
Sbjct: 100 LGCLADKYSFTKISTCGIFIISGLTLRTEAIGAAVKGWPLGLFGLIS 146

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100629|ref|XP_002311952.1| predicted protein [Populus trichocarpa] gi|222851772|gb|EEE89319.1| predicted protein [Populus trichocarpa]

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 58/75 (77%), Positives = 63/75 (84%)

Query: 71  KPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIG 130
           K LL  A +NFLPLALIGGV  G ANP+LGCLADKY LSKFSTFAIFI SGLTLR+GEIG
Sbjct: 3   KSLLNFADNNFLPLALIGGVVSGLANPTLGCLADKYYLSKFSTFAIFITSGLTLRNGEIG 62

Query: 131 AAAEAWPVGIFGLCS 145
            A EAWPVG+ G+CS
Sbjct: 63  DAIEAWPVGVLGICS 77

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468358|ref|XP_004151888.1| PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic-like [Cucumis sativus] gi|449521070|ref|XP_004167554.1| PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic-like [Cucumis sativus]

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/133 (49%), Positives = 84/133 (63%), Gaps = 12/133 (9%)

Query: 25  SHFRASGSLRFSPFVTFSPGRSISRPIRAC-RPSDQD-----------FASSKGLNWAKP 72
           SHF ++ +L  S  +  +  R    PIRAC  P  +D             S K ++W + 
Sbjct: 31  SHFSSNVALLPSTSLALNRKRRSYCPIRACGLPDKKDDGGRINEPTSVSGSEKRVSWFET 90

Query: 73  LLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAA 132
           L   A +NFLPLAL+ GVA G ANPSLGCLAD+Y LSKFSTF IF++SGLTLR+ EI A+
Sbjct: 91  LSTFANNNFLPLALVTGVAVGVANPSLGCLADRYYLSKFSTFGIFVISGLTLRTSEISAS 150

Query: 133 AEAWPVGIFGLCS 145
            EAWPV ++GL S
Sbjct: 151 VEAWPVAVYGLVS 163

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534671|ref|XP_003535876.1| PREDICTED: sodium/bile acid cotransporter 7-like [Glycine max]

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/152 (45%), Positives = 86/152 (56%), Gaps = 20/152 (13%)

Query: 6   QTLILTPRPSKMLSSWHRNSHFRASGSLRFSPFVTFSPGRSISRP-----IRACRPSDQ- 59
            +L LTP P+   S  HR  H  A  +L           RS++R      +RAC  S Q 
Sbjct: 25  HSLTLTPFPATASSFRHR--HLYAVKALTL---------RSVTRRLKPALVRACDRSQQM 73

Query: 60  ---DFASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAI 116
                  +KGL+W +P+L  A  N LPLAL+  V  G   PS+GC+ADKY +SK   F I
Sbjct: 74  GGNGSKETKGLSWVEPILTFARRNILPLALVSAVTLGLTYPSIGCVADKYGVSKIGPFGI 133

Query: 117 FIVSGLTLRSGEIGAAAEAWPVGIFGLCSSQF 148
           F++SGL LRS EIGAA EAWPVG+FGL S  F
Sbjct: 134 FVISGLMLRSEEIGAAVEAWPVGLFGLVSILF 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42565967|ref|NP_191175.2| Sodium bile acid symporter family protein [Arabidopsis thaliana] gi|403399721|sp|F4IZC4.1|BASS4_ARATH RecName: Full=Probable sodium/metabolite cotransporter BASS4, chloroplastic; AltName: Full=Bile acid transporter 4; AltName: Full=Bile acid-sodium symporter family protein 4; Flags: Precursor gi|332645967|gb|AEE79488.1| Sodium bile acid symporter family protein [Arabidopsis thaliana]

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/134 (49%), Positives = 80/134 (59%), Gaps = 33/134 (24%)

Query: 45  RSISRPIRACRPSDQ-------DF--------------------------ASSKGLNWAK 71
           R ISR IRAC+PSD+       DF                          AS++ L + K
Sbjct: 40  RWISRSIRACQPSDKVSGQFPFDFMYSSMLIPSSCGEWNRIHLGGDGGISASAQRLYFGK 99

Query: 72  PLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGA 131
            LL  A+DNFLPLAL+ GV  GFANP+LGCLADKY  +K ST  IFI+SGLTLR+  IGA
Sbjct: 100 ELLSFASDNFLPLALVSGVGLGFANPTLGCLADKYSFTKISTCGIFIISGLTLRTEAIGA 159

Query: 132 AAEAWPVGIFGLCS 145
           A + WP+G+FGL S
Sbjct: 160 AVKGWPLGLFGLIS 173

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|305682289|dbj|BAJ16227.1| putative plastid localized membrane protein [Flaveria trinervia]

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 58/82 (70%), Positives = 64/82 (78%)

Query: 64  SKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLT 123
           SK L +A+PLL     NFLPLALIGGV  GFANP+LGCLA  Y +SK ST  IFI+SGLT
Sbjct: 83  SKLLVYAEPLLNFIDINFLPLALIGGVTLGFANPTLGCLAHNYHVSKISTCGIFIISGLT 142

Query: 124 LRSGEIGAAAEAWPVGIFGLCS 145
           LRS EIGAAAEAW VG+FGL S
Sbjct: 143 LRSEEIGAAAEAWQVGLFGLAS 164

Source: Flaveria trinervia

Species: Flaveria trinervia

Genus: Flaveria

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820376|ref|XP_002878071.1| bile acid:sodium symporter [Arabidopsis lyrata subsp. lyrata] gi|297323909|gb|EFH54330.1| bile acid:sodium symporter [Arabidopsis lyrata subsp. lyrata]

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 75/118 (63%), Gaps = 17/118 (14%)

Query: 45  RSISRPIRACRPSDQDF-----------------ASSKGLNWAKPLLKIAADNFLPLALI 87
           R I R IRAC+ SD+                   AS++  ++ K  +   +DNFLPLAL+
Sbjct: 40  RWIPRSIRACQSSDKVSVSVTIPSLRLGGDGAISASAQRFHFGKEFMSFVSDNFLPLALV 99

Query: 88  GGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLCS 145
            GVA GFANP+LGCLADKY  +K ST  IFI+SGLTLR+  IGAA + WP+G+FGL S
Sbjct: 100 SGVALGFANPTLGCLADKYSFTKISTCGIFIISGLTLRTEAIGAAVKGWPLGVFGLIS 157

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
TAIR|locus:2078471	436	AT3G56160 [Arabidopsis thalian	0.535	0.192	0.630	4.8e-28

TAIR|locus:2078471 AT3G56160 [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 4.8e-28, Sum P(2) = 4.8e-28
 Identities = 53/84 (63%), Positives = 65/84 (77%)

Query:    62 ASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSG 121
             AS++ L + K LL  A+DNFLPLAL+ GV  GFANP+LGCLADKY  +K ST  IFI+SG
Sbjct:    90 ASAQRLYFGKELLSFASDNFLPLALVSGVGLGFANPTLGCLADKYSFTKISTCGIFIISG 149

Query:   122 LTLRSGEIGAAAEAWPVGIFGLCS 145
             LTLR+  IGAA + WP+G+FGL S
Sbjct:   150 LTLRTEAIGAAVKGWPLGLFGLIS 173

GO:0006814 "sodium ion transport" evidence=IEA

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	157
pfam13593	313	pfam13593, DUF4137, SBF-like CPA transporter famil	5e-07

>gnl|CDD|222249 pfam13593, DUF4137, SBF-like CPA transporter family (DUF4137)

 Score = 47.5 bits (114), Expect = 5e-07
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 80  NFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIV---SGLTLRSGEIGAAAEAW 136
           ++  LAL+  +      P  G      +    +T+A+ ++   SGL L + E+ A    W
Sbjct: 1   DWFLLALVLAILLASLFPVPGAAGGPIRAEYVTTYAVALIFFLSGLKLSTEELLAGLRNW 60

Query: 137 PVGIFGLCSS 146
            + +F    +
Sbjct: 61  RLHLFVQLFT 70

These family members are membrane transporter proteins of the CPA and AT superfamily. Length = 313

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	157
KOG4821	287	consensus Predicted Na+-dependent cotransporter [G	99.78
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	99.46
COG0385	319	Predicted Na+-dependent transporter [General funct	97.86
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	97.08
TIGR00841	286	bass bile acid transporter. Functionally character	89.16

>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]

Probab=99.78  E-value=4.4e-19  Score=151.06  Aligned_cols=91  Identities=21%  Similarity=0.289  Sum_probs=86.8

Q ss_pred             cccCccchHHHHHHHHhhhHHHHHHHHHHHHhhCCCC----ceeeeeeeeeeeeEEeeeeecCCccchHHHHHHHhcChh
Q 031571           63 SSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSL----GCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPV  138 (157)
Q Consensus        63 ~~~~~~w~~~v~~Fli~nfLplaL~vavvlal~~P~p----G~i~~eysI~y~ava~IFLISGLtLkT~eL~~al~~W~a  138 (157)
                      +..+..|.+|+.++..++|+.++...+++.+-+.|+.    |++++||+++|+||++||++|||+||||||.+|+.|||-
T Consensus         6 ~~~r~i~~~R~~e~~~~~Wf~~~I~~~i~~aKL~p~~G~~gG~Lk~~ys~~yI~va~IF~~SGL~LkTE~l~aA~~~w~L   85 (287)
T KOG4821|consen    6 SLIRKIWAHRVTEFLKSQWFFICIAILIVIAKLAPNFGRDGGLLKGQYSIGYICVAWIFLQSGLGLKTESLMAAMLNWRL   85 (287)
T ss_pred             cchHHHHHHHHHHHHhcchHHHHHHHhhhHhhhCCCCCccCCcccCceeEEeEEEEEEEeecCccccHHHHHHHHhCCch
Confidence            4456689999999999999999999999999999999    899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccc
Q 031571          139 GIFGLCSSQFCYLLH  153 (157)
Q Consensus       139 ~iyGlvsIL~iTp~~  153 (157)
                      -+|+++++|++||-.
T Consensus        86 hLFilI~~Ll~tPs~  100 (287)
T KOG4821|consen   86 HLFILILSLLITPSI  100 (287)
T ss_pred             HHHHHHHHHHHhHHH
Confidence            999999999999953

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=99.46  E-value=1e-14  Score=124.62  Aligned_cols=75  Identities=24%  Similarity=0.421  Sum_probs=68.6

Q ss_pred             hhHHHHHHHHHHHHhhCCCCceee----eeeeeeeeeEEeeeeecCCccchHHHHHHHhcChhHHHHHHHHHHhhccccc
Q 031571           80 NFLPLALIGGVAFGFANPSLGCLA----DKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLCSSQFCYLLHTF  155 (157)
Q Consensus        80 nfLplaL~vavvlal~~P~pG~i~----~eysI~y~ava~IFLISGLtLkT~eL~~al~~W~a~iyGlvsIL~iTp~~gf  155 (157)
                      |||++++++++++|+++|.+|...    .|+.+.|+ +++||+++|++|+|+|++++++||+..+++++++++++|++||
T Consensus         1 ~~fl~~l~~ai~la~~~P~~g~~~~~~~~~~~~~~~-v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~   79 (313)
T PF13593_consen    1 QWFLLGLLLAILLAYLFPAPGAAGGVIKPEYVIKYG-VALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGF   79 (313)
T ss_pred             CchHHHHHHHHHHHHHcCcccccCCccchhhhHHHH-HHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999998844    44555555 9999999999999999999999999999999999999999986

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=97.86  E-value=4.4e-06  Score=73.63  Aligned_cols=83  Identities=17%  Similarity=0.113  Sum_probs=68.7

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHhhCCCCceeeeeee-eeeeeEEeeeeecCCccchHHHHHHHhcChhHHHHHHHHHHhhc
Q 031571           73 LLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLCSSQFCYL  151 (157)
Q Consensus        73 v~~Fli~nfLplaL~vavvlal~~P~pG~i~~eys-I~y~ava~IFLISGLtLkT~eL~~al~~W~a~iyGlvsIL~iTp  151 (157)
                      ..+++..+++...++..+++|...|..|.-..-.+ ..++++++||+-.|++|+.+|+++.++||+..+.|+++-..+.|
T Consensus         3 ~~~~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmP   82 (319)
T COG0385           3 LLRFLSRDPFKIFLLWVVLLAAIAPIFPETFGWLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMP   82 (319)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            45667677766667777777777777666555543 35899999999999999999999999999999999999999999


Q ss_pred             cccc
Q 031571          152 LHTF  155 (157)
Q Consensus       152 ~~gf  155 (157)
                      ++||
T Consensus        83 lla~   86 (319)
T COG0385          83 LLAL   86 (319)
T ss_pred             HHHH
Confidence            9986

>TIGR00832 acr3 arsenical-resistance protein

Probab=97.08  E-value=0.00013  Score=63.30  Aligned_cols=78  Identities=15%  Similarity=0.111  Sum_probs=60.7

Q ss_pred             HhhhHHHHHHHHHHHHhhCCCCceeeeeee---e-eeeeEEeeeeecC--CccchHHHHHHHhcChhHHHHHHHHHHhhc
Q 031571           78 ADNFLPLALIGGVAFGFANPSLGCLADKYQ---L-SKFSTFAIFIVSG--LTLRSGEIGAAAEAWPVGIFGLCSSQFCYL  151 (157)
Q Consensus        78 i~nfLplaL~vavvlal~~P~pG~i~~eys---I-~y~ava~IFLISG--LtLkT~eL~~al~~W~a~iyGlvsIL~iTp  151 (157)
                      ...|..++.+.++++|+.+|..+.....+.   + -..+++.+|+..|  ++|+.+|+++.+++|+..+.|++.-..+.|
T Consensus         8 ~~~~~~~~~i~~~~~g~~~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~P   87 (328)
T TIGR00832         8 LTLWIFLAIAAGVGLGVLFPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGP   87 (328)
T ss_pred             HHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHH
Confidence            446777788888899999999866554332   1 1233444455555  999999999999999999999999999999


Q ss_pred             cccc
Q 031571          152 LHTF  155 (157)
Q Consensus       152 ~~gf  155 (157)
                      +++|
T Consensus        88 lla~   91 (328)
T TIGR00832        88 FLMF   91 (328)
T ss_pred             HHHH
Confidence            8876

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>TIGR00841 bass bile acid transporter

Probab=89.16  E-value=0.15  Score=43.15  Aligned_cols=43  Identities=23%  Similarity=0.127  Sum_probs=38.8

Q ss_pred             EEeeeeecCCccchHHHHHHHhcChhHHHHHHHHHHhhccccc
Q 031571          113 TFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLCSSQFCYLLHTF  155 (157)
Q Consensus       113 va~IFLISGLtLkT~eL~~al~~W~a~iyGlvsIL~iTp~~gf  155 (157)
                      .+++++..|++|+.+|+++.+++|+....+++.-+.+.|+++|
T Consensus        14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~   56 (286)
T TIGR00841        14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGF   56 (286)
T ss_pred             HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            4567788999999999999999999999999999999998875

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	157
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	98.38

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=98.38  E-value=3.5e-08  Score=83.38  Aligned_cols=84  Identities=17%  Similarity=0.069  Sum_probs=74.0

Q ss_pred             chHHHHHHHHhhhHHHHHHHHHHHHhhCCCCceeeeeeeeeeeeEEeeeeecCCccchHHHHHHHhcChhHHHHHHHHHH
Q 031571           69 WAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLCSSQF  148 (157)
Q Consensus        69 w~~~v~~Fli~nfLplaL~vavvlal~~P~pG~i~~eysI~y~ava~IFLISGLtLkT~eL~~al~~W~a~iyGlvsIL~  148 (157)
                      ..+|+.+|+ ++|+++.+++++++|+++|..+.....+  -..+++++++..|++++.+|+++.+++|+..++++++-+.
T Consensus         8 ~l~~~~~~l-~~~~~l~i~~~~~lg~~~P~~~~~~~~~--i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~v   84 (332)
T 3zux_A            8 ILSKISSFI-GKTFSLWAALFAAAAFFAPDTFKWAGPY--IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFA   84 (332)
T ss_dssp             HHHHHHHHH-HHTHHHHHHHHHHHHHHCGGGTGGGGGG--HHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHcchhhhhhHHH--HHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHH
Confidence            458888888 6899999999999999999997765432  3357889999999999999999999999999999999999


Q ss_pred             hhccccc
Q 031571          149 CYLLHTF  155 (157)
Q Consensus       149 iTp~~gf  155 (157)
                      +.|+++|
T Consensus        85 i~Pll~~   91 (332)
T 3zux_A           85 IMPATAW   91 (332)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999876

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00