Citrus Sinensis ID: 031572

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
Protein Sequence
MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYACNEMPPQFGARSDTNEQNSGFYFPSQWNNNNDGSHEGGESSSM
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHcccccccccccccccccHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHcccccEcccccccccHHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
masssysnapcaackclrrkcmpdcvfapyfppeepqkfvnvhkifgaSNVSKLLNEVLPHQREDAVNSLAYEAEArlkdpvygcvGAISVLQRQVMRLQRELDATNADLIRYACnemppqfgarsdtneqnsgfyfpsqwnnnndgsheggesssm
Flexible Loop (DISEMBL)
masssysnapCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYACNEMPPQFGARSDTNEQNSGFyfpsqwnnnndgsheggesssm
Low Complexity Region (SEG)
MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYACNEMPPQFGARSDTNEQNSGFYFPSQWNNNNDGSHEGGESSSM
Disordered region (IsUnstruct)
*********PCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYACN*****************************************
Disordered Region (DISOPRED)
*************CKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIR*********************************************
Disordered Region (DISEMBL)
**********CAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYACNEMPPQFGARSDTNEQNSGFYFPSQWNNNND***********
Disordered Region (DISPRO)
********APCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYACNEMP**************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARLKDPVYGCVGAxxxxxxxxxxxxxxxxxxxxxLIRYACNEMPPQFGARSDTNEQNSGFYFPSQWNNNNDGSHEGGESSSM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	157	2.2.26 [Sep-21-2011]
Q8L8Q3	159	LOB domain-containing pro	yes	no	0.707	0.698	0.855	2e-52
Q9FML4	186	Protein LATERAL ORGAN BOU	no	no	0.726	0.612	0.834	4e-51
Q8LQH4	269	LOB domain-containing pro	no	no	0.681	0.397	0.682	4e-41
A2WXT0	269	LOB domain-containing pro	N/A	no	0.681	0.397	0.682	4e-41
Q32SG3	260	LOB domain-containing pro	N/A	no	0.681	0.411	0.682	4e-41
A1YKY7	269	Protein IAL1 OS=Zea mays	N/A	no	0.681	0.397	0.654	4e-40
O04479	199	LOB domain-containing pro	no	no	0.713	0.562	0.707	2e-38
Q9FKZ3	313	LOB domain-containing pro	no	no	0.707	0.354	0.649	4e-38
O64836	311	LOB domain-containing pro	no	no	0.681	0.344	0.607	8e-37
Q8LBW3	193	LOB domain-containing pro	no	no	0.662	0.538	0.634	6e-36

>sp|Q8L8Q3|LBD25_ARATH LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3

 Score =  204 bits (520), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 95/111 (85%), Positives = 104/111 (93%)

Query: 4   SSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQR 63
           S+Y+N+PCAACK LRRKC  DCVFAPYFPPEEP KF NVH+IFGASNVSK+L+EV PHQR
Sbjct: 33  SNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQR 92

Query: 64  EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYA 114
           EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQV+RLQREL+ TNADL+RYA
Sbjct: 93  EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYA 143

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FML4|LOB_ARATH Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1

 Score =  200 bits (508), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 96/115 (83%), Positives = 103/115 (89%), Gaps = 1/115 (0%)

Query: 1   MASSSYS-NAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVL 59
           MASSS S N+PCAACK LRRKCMP C+FAPYFPPEEP KF NVHKIFGASNV+KLLNE+L
Sbjct: 1   MASSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELL 60

Query: 60  PHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYA 114
           PHQREDAVNSLAYEAEAR++DPVYGCVGAIS LQRQV RLQ+ELDA NADL  Y 
Sbjct: 61  PHQREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYG 115

Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LQH4|LBD6_ORYSJ LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=LBD6 PE=2 SV=1

 Score =  166 bits (421), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 73/107 (68%), Positives = 91/107 (85%)

Query: 7   SNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDA 66
           + +PCAACK LRRKC PDCVFAPYFPP+ PQKFV+VH++FGASNV+KLLNE+ P+QREDA
Sbjct: 35  TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDA 94

Query: 67  VNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRY 113
           VNSLAYEA+ RL+DPVYGCV  IS+LQR + +LQ++L     +L +Y
Sbjct: 95  VNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKY 141

Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WXT0|LBD6_ORYSI LOB domain-containing protein 6 OS=Oryza sativa subsp. indica GN=LBD6 PE=3 SV=1

 Score =  166 bits (421), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 73/107 (68%), Positives = 91/107 (85%)

Query: 7   SNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDA 66
           + +PCAACK LRRKC PDCVFAPYFPP+ PQKFV+VH++FGASNV+KLLNE+ P+QREDA
Sbjct: 35  TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDA 94

Query: 67  VNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRY 113
           VNSLAYEA+ RL+DPVYGCV  IS+LQR + +LQ++L     +L +Y
Sbjct: 95  VNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKY 141

Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q32SG3|LBD6_MAIZE LOB domain-containing protein 6 OS=Zea mays GN=LBD6 PE=1 SV=1

 Score =  166 bits (421), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 73/107 (68%), Positives = 90/107 (84%)

Query: 7   SNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDA 66
           + +PCAACK LRRKC PDCVFAPYFPP+ PQKFV+VH++FGASNV+KLLNE+ P QREDA
Sbjct: 30  TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDA 89

Query: 67  VNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRY 113
           VNSLAYEA+ RL+DPVYGCVG IS+LQ  + +LQ++L     +L +Y
Sbjct: 90  VNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKY 136

Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes.

Zea mays (taxid: 4577)

>sp|A1YKY7|IAL1_MAIZE Protein IAL1 OS=Zea mays PE=2 SV=1

 Score =  163 bits (412), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 70/107 (65%), Positives = 89/107 (83%)

Query: 7   SNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDA 66
           + +PCAACK LRRKC PDCVFAPYFPP+ PQKFV VH++FGASNV+KL+NE+ P QREDA
Sbjct: 30  TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVRVHRVFGASNVTKLMNEIHPLQREDA 89

Query: 67  VNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRY 113
           +NSLAYEA+ R++DPVYGCVG IS+LQ  + +LQ++L     +L +Y
Sbjct: 90  MNSLAYEADMRIRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKY 136

Zea mays (taxid: 4577)

>sp|O04479|LBD6_ARATH LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1

 Score =  157 bits (397), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/113 (70%), Positives = 97/113 (85%), Gaps = 1/113 (0%)

Query: 1   MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLP 60
           MASSS +N+PCAACK LRRKC P+CVFAPYFPP++PQKF NVHK+FGASNV+KLLNE+ P
Sbjct: 1   MASSS-TNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHP 59

Query: 61  HQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRY 113
            QREDAVNSLAYEA+ RL+DPVYGCVG IS+LQ Q+ +LQ +L    ++L +Y
Sbjct: 60  SQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKY 112

Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Positively regulates LATERAL ORGAN BOUNDARIES (LOB) within the shoot apex, and the class III HD-ZIP genes REV, PHB, and PHV. Interacts directly with ASYMMETRIC LEAVES 1 (AS1) to repress the knox homeobox genes BP/KNAT1, KNAT2, and KNAT6 and the abaxial determinants ARF3/ETT, KAN2 and YAB5. May act in parallel with the RDR6-SGS3-AGO7 pathway, an endogenous RNA silencing pathway, to regulate the leaf morphogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ3|LBD36_ARATH LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1

 Score =  156 bits (395), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 74/114 (64%), Positives = 91/114 (79%), Gaps = 3/114 (2%)

Query: 1   MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLP 60
           MASSS   +PCAACK LRRKC  +CVFAPYFPP++PQKF  VHK+FGASNV+KLLNE+  
Sbjct: 1   MASSS---SPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELAS 57

Query: 61  HQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYA 114
           +QREDAVNSL YEAEARL+DPVYGCVG IS+LQ ++ ++  +L+    +L  Y 
Sbjct: 58  NQREDAVNSLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELATYV 111

Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP.

Arabidopsis thaliana (taxid: 3702)

>sp|O64836|LBD10_ARATH LOB domain-containing protein 10 OS=Arabidopsis thaliana GN=LBD10 PE=2 SV=1

 Score =  152 bits (384), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 86/107 (80%)

Query: 7   SNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDA 66
           ++ PCAACK LRRKC  +CVFAPYFPP  PQKF+ VH++FGASNV+K+LN++ P QRED 
Sbjct: 2   ASTPCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQREDT 61

Query: 67  VNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRY 113
           VNSL YEAEAR++DP+YGCVG IS LQ+ + ++Q++L     +L+ Y
Sbjct: 62  VNSLFYEAEARIRDPIYGCVGLISFLQQYLKKIQQDLLTAKEELVGY 108

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBW3|LBD12_ARATH LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2

 Score =  149 bits (376), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 66/104 (63%), Positives = 84/104 (80%)

Query: 8   NAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAV 67
           ++PCA+CK LRR+C  DC+FAPYFPP++P KF  VHK+FGASNVSK+L E+  HQR DAV
Sbjct: 6   SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 65

Query: 68  NSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLI 111
           NSL +EA AR++DPVYGCVGAIS LQ QV +LQ +L    A+++
Sbjct: 66  NSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEIL 109

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
224060129	161	predicted protein [Populus trichocarpa]	0.968	0.944	0.805	9e-68
255560892	175	LOB domain-containing protein, putative	0.980	0.88	0.725	1e-64
356571307	166	PREDICTED: LOB domain-containing protein	0.961	0.909	0.748	6e-64
356560579	164	PREDICTED: LOB domain-containing protein	0.961	0.920	0.757	4e-62
296087618	201	unnamed protein product [Vitis vinifera]	0.955	0.746	0.727	1e-61
225452358	170	PREDICTED: protein LATERAL ORGAN BOUNDAR	0.955	0.882	0.727	3e-61
356573331	168	PREDICTED: LOB domain-containing protein	0.949	0.886	0.737	8e-60
449446875	195	PREDICTED: LOB domain-containing protein	0.968	0.779	0.681	1e-59
449524046	177	PREDICTED: LOB domain-containing protein	0.968	0.858	0.681	2e-59
255629129	131	unknown [Glycine max]	0.828	0.992	0.846	3e-59

>gi|224060129|ref|XP_002300051.1| predicted protein [Populus trichocarpa] gi|222847309|gb|EEE84856.1| predicted protein [Populus trichocarpa]

 Score =  261 bits (666), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 128/159 (80%), Positives = 138/159 (86%), Gaps = 7/159 (4%)

Query: 1   MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLP 60
           MASSSYSN+PCAACK LRRKCMPDC+FAPYFPPEEPQKF NVHKIFGASNVSKLLNEVLP
Sbjct: 1   MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVLP 60

Query: 61  HQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYACNEMP- 119
           HQREDAVNSLAYEAEAR+KDPVYGCVGAISVLQRQV+RLQ+ELDATNADLIRYACNEMP 
Sbjct: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYACNEMPA 120

Query: 120 --PQFGARSD----TNEQNSGFYFPSQWNNNNDGSHEGG 152
             PQFG R      + +Q+SG Y+PS WNN+  G    G
Sbjct: 121 ANPQFGRRMGHGGVSYDQSSGIYYPSPWNNDTCGERGDG 159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560892|ref|XP_002521459.1| LOB domain-containing protein, putative [Ricinus communis] gi|223539358|gb|EEF40949.1| LOB domain-containing protein, putative [Ricinus communis]

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 124/171 (72%), Positives = 138/171 (80%), Gaps = 17/171 (9%)

Query: 2   ASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPH 61
           +SS+YSN+PCAACK LRRKC+PDC+FAPYFPPEEPQKF NVHKIFGASNVSKLLNEVLPH
Sbjct: 4   SSSAYSNSPCAACKFLRRKCLPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVLPH 63

Query: 62  QREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYACNEM--- 118
           QREDAVNSLAYEAEAR+KDPVYGCVGAISVLQRQV+RLQ+ELDATNADLIRYACN+    
Sbjct: 64  QREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYACNDQMPP 123

Query: 119 ---------PPQFGARSD-----TNEQNSGFYFPSQWNNNNDGSHEGGESS 155
                      QFG RS      + +QNSGFY+P  WNN++D    GG  S
Sbjct: 124 PPPTITSSSSSQFGRRSGHGSGVSYDQNSGFYYPPPWNNHDDIQGRGGHGS 174

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571307|ref|XP_003553820.1| PREDICTED: LOB domain-containing protein 25 [Glycine max]

 Score =  248 bits (633), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 122/163 (74%), Positives = 133/163 (81%), Gaps = 12/163 (7%)

Query: 1   MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLP 60
           MASSSYSN+PCAACK LRRKCMPDC+F+PYFPPEEPQKF NVHKIFGASNVSKLLNEV P
Sbjct: 1   MASSSYSNSPCAACKFLRRKCMPDCIFSPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60

Query: 61  HQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYACNEMPP 120
           HQREDAVNSLAYEAEAR+KDPVYGCVGAISVLQRQV+RLQ+ELDATNADLIRY CNEMP 
Sbjct: 61  HQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCNEMPT 120

Query: 121 QFGAR----------SDTNEQNSGFYFPSQWNNN--NDGSHEG 151
               R            +  Q+ G+Y+PS WNN+   DG H G
Sbjct: 121 TQDGRRIIGEGDGDGGSSLGQSPGYYYPSPWNNDPLGDGYHRG 163

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560579|ref|XP_003548568.1| PREDICTED: LOB domain-containing protein 25-like [Glycine max]

 Score =  242 bits (618), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 122/161 (75%), Positives = 133/161 (82%), Gaps = 10/161 (6%)

Query: 1   MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLP 60
           MASSSYSN+PCAACK LRRKCMPDC+FAPYFPPEEPQKF NVHKIFGASNVSKLLNEV P
Sbjct: 1   MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60

Query: 61  HQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYACNEMPP 120
           HQREDAVNSLAYEAEAR+KDPVYGCVGAISVLQRQV+RLQ+ELDAT+ADLIRY CNEMP 
Sbjct: 61  HQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATSADLIRYTCNEMPT 120

Query: 121 Q--------FGARSDTNEQNSGFYFPSQWNNNN--DGSHEG 151
                          +  Q+SG+Y+PS WNN+   DG H G
Sbjct: 121 TTQDGRRIIGEGGGSSLGQSSGYYYPSPWNNDTLGDGYHRG 161

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087618|emb|CBI34874.3| unnamed protein product [Vitis vinifera]

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 123/169 (72%), Positives = 135/169 (79%), Gaps = 19/169 (11%)

Query: 1   MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLP 60
           MASSSYSN+PCAACK LRRKCMP C+FAPYFPPEEPQKF+NVHKIFGASNVSKLLNE+LP
Sbjct: 32  MASSSYSNSPCAACKLLRRKCMPGCIFAPYFPPEEPQKFINVHKIFGASNVSKLLNEILP 91

Query: 61  HQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYACNEM-- 118
           HQREDAVNSLAYEAEAR+KDPVYGCVGAISVLQRQV+RLQ+ELDATNADLIR+ CN+M  
Sbjct: 92  HQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVLRLQKELDATNADLIRFTCNDMSS 151

Query: 119 ------PPQFGARSD--------TNEQNSGF--YFPSQWNNNNDG-SHE 150
                   QFG R          +  QNSG    +PS W+NN  G SHE
Sbjct: 152 SLSGPGSSQFGRRMSHGGGGGGASFNQNSGLPPPYPSPWDNNPSGDSHE 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452358|ref|XP_002273053.1| PREDICTED: protein LATERAL ORGAN BOUNDARIES [Vitis vinifera]

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 123/169 (72%), Positives = 135/169 (79%), Gaps = 19/169 (11%)

Query: 1   MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLP 60
           MASSSYSN+PCAACK LRRKCMP C+FAPYFPPEEPQKF+NVHKIFGASNVSKLLNE+LP
Sbjct: 1   MASSSYSNSPCAACKLLRRKCMPGCIFAPYFPPEEPQKFINVHKIFGASNVSKLLNEILP 60

Query: 61  HQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYACNEM-- 118
           HQREDAVNSLAYEAEAR+KDPVYGCVGAISVLQRQV+RLQ+ELDATNADLIR+ CN+M  
Sbjct: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVLRLQKELDATNADLIRFTCNDMSS 120

Query: 119 ------PPQFGARSD--------TNEQNSGF--YFPSQWNNNNDG-SHE 150
                   QFG R          +  QNSG    +PS W+NN  G SHE
Sbjct: 121 SLSGPGSSQFGRRMSHGGGGGGASFNQNSGLPPPYPSPWDNNPSGDSHE 169

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573331|ref|XP_003554815.1| PREDICTED: LOB domain-containing protein 25-like [Glycine max]

 Score =  234 bits (597), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 121/164 (73%), Positives = 134/164 (81%), Gaps = 15/164 (9%)

Query: 1   MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLP 60
           MASSSYSN+PCAACK LRRKCMPDC+FAPYFPPEEP KF NVHKIFGASNVSKLLNEV P
Sbjct: 1   MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPHKFANVHKIFGASNVSKLLNEVQP 60

Query: 61  HQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRY-ACNEMP 119
           HQREDAVNSLAYEAEAR+KDPVYGCVGAISVLQ+QV+RLQ+ELDATNADLIRY ACNEM 
Sbjct: 61  HQREDAVNSLAYEAEARIKDPVYGCVGAISVLQKQVLRLQKELDATNADLIRYSACNEM- 119

Query: 120 PQFGARS------------DTNEQNSGFYFPSQWNNNNDGSHEG 151
           P  G RS             +   + GFY+P+ WNN+  G++ G
Sbjct: 120 PNLGGRSRMCSDDGGGGGSSSLAHSHGFYYPN-WNNDPCGNNNG 162

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446875|ref|XP_004141196.1| PREDICTED: LOB domain-containing protein 25-like [Cucumis sativus]

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 120/176 (68%), Positives = 137/176 (77%), Gaps = 24/176 (13%)

Query: 1   MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLP 60
           M+SS+YSN+PCAACK LRRKC+PDCVFAPYFPPEEPQKF NVHKIFGASNVSKLLNEV P
Sbjct: 19  MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 78

Query: 61  HQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYACNEMPP 120
           HQREDAVNSLAYEAEAR+KDPVYGCVGAIS+LQRQV++LQ+ELDATNADLIRYAC+E+P 
Sbjct: 79  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPA 138

Query: 121 -------QFGARSDTNEQN------------SGFYFPSQWNNNNDG----SHEGGE 153
                  Q+  RS +                +G YF S W+NNN+G     H+ GE
Sbjct: 139 PSPSSSSQYARRSSSTSHEGSSSTSSYGHYYTGLYF-SPWSNNNNGPCGDGHDKGE 193

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524046|ref|XP_004169034.1| PREDICTED: LOB domain-containing protein 25-like [Cucumis sativus]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 120/176 (68%), Positives = 137/176 (77%), Gaps = 24/176 (13%)

Query: 1   MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLP 60
           M+SS+YSN+PCAACK LRRKC+PDCVFAPYFPPEEPQKF NVHKIFGASNVSKLLNEV P
Sbjct: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60

Query: 61  HQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYACNEMPP 120
           HQREDAVNSLAYEAEAR+KDPVYGCVGAIS+LQRQV++LQ+ELDATNADLIRYAC+E+P 
Sbjct: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPA 120

Query: 121 -------QFGARSDTNEQN------------SGFYFPSQWNNNNDG----SHEGGE 153
                  Q+  RS +                +G YF S W+NNN+G     H+ GE
Sbjct: 121 PSPSSSSQYARRSSSTSHEGSSSTSSYGHYYTGLYF-SPWSNNNNGPCGDGHDKGE 175

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255629129|gb|ACU14909.1| unknown [Glycine max]

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 110/130 (84%), Positives = 117/130 (90%)

Query: 1   MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLP 60
           MASSSYSN+PCAACK LRRKCMPDC+F+PYFPPEEPQKF NVHKIFGASNVSKLLNEV P
Sbjct: 1   MASSSYSNSPCAACKFLRRKCMPDCIFSPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60

Query: 61  HQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYACNEMPP 120
           HQREDAVNSLAYEAEAR++DPVYGCVGAISVLQRQV+RLQ+ELDATNADLIRY CNEMP 
Sbjct: 61  HQREDAVNSLAYEAEARIRDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCNEMPT 120

Query: 121 QFGARSDTNE 130
               R    E
Sbjct: 121 TQDGRRIIGE 130

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
TAIR|locus:2089184	159	LBD25 "LOB domain-containing p	0.777	0.767	0.792	1.5e-49
TAIR|locus:2161982	186	LOB "LATERAL ORGAN BOUNDARIES"	0.719	0.607	0.842	2.9e-48
TAIR|locus:2034163	199	AS2 "ASYMMETRIC LEAVES 2" [Ara	0.713	0.562	0.707	4.6e-41
UNIPROTKB|Q32SG3	260	LBD6 "LOB domain-containing pr	0.681	0.411	0.682	2.1e-38
TAIR|locus:2174989	313	ASL1 "ASYMMETRIC LEAVES 2-like	0.700	0.351	0.654	1.7e-36
TAIR|locus:2046817	311	LBD10 "LOB domain-containing p	0.738	0.372	0.567	6.5e-35
TAIR|locus:2060842	193	ASL5 [Arabidopsis thaliana (ta	0.662	0.538	0.634	1.3e-34
TAIR|locus:2061828	224	LBD15 "LOB domain-containing p	0.796	0.558	0.566	3.6e-34
TAIR|locus:2197500	172	LBD4 "LOB domain-containing pr	0.656	0.598	0.631	1.5e-33
TAIR|locus:2032931	165	ASL9 "ASYMMETRIC LEAVES 2-like	0.815	0.775	0.541	8.5e-33

TAIR|locus:2089184 LBD25 "LOB domain-containing protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 99/125 (79%), Positives = 109/125 (87%)

Query:     4 SSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQR 63
             S+Y+N+PCAACK LRRKC  DCVFAPYFPPEEP KF NVH+IFGASNVSK+L+EV PHQR
Sbjct:    33 SNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQR 92

Query:    64 EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYA-C--NEMPP 120
             EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQV+RLQREL+ TNADL+RYA C   E   
Sbjct:    93 EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYAGCLGGETTS 152

Query:   121 QFGAR 125
              +G R
Sbjct:   153 AYGGR 157

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161982 LOB "LATERAL ORGAN BOUNDARIES" [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 96/114 (84%), Positives = 103/114 (90%)

Query:     1 MASSSYS-NAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVL 59
             MASSS S N+PCAACK LRRKCMP C+FAPYFPPEEP KF NVHKIFGASNV+KLLNE+L
Sbjct:     1 MASSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELL 60

Query:    60 PHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRY 113
             PHQREDAVNSLAYEAEAR++DPVYGCVGAIS LQRQV RLQ+ELDA NADL  Y
Sbjct:    61 PHQREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHY 114

GO:0005634 "nucleus" evidence=ISM

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IMP

TAIR|locus:2034163 AS2 "ASYMMETRIC LEAVES 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 80/113 (70%), Positives = 97/113 (85%)

Query:     1 MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLP 60
             MASSS +N+PCAACK LRRKC P+CVFAPYFPP++PQKF NVHK+FGASNV+KLLNE+ P
Sbjct:     1 MASSS-TNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHP 59

Query:    61 HQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRY 113
              QREDAVNSLAYEA+ RL+DPVYGCVG IS+LQ Q+ +LQ +L    ++L +Y
Sbjct:    60 SQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKY 112

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009799 "specification of symmetry" evidence=IMP

GO:0009954 "proximal/distal pattern formation" evidence=IGI

GO:0048441 "petal development" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0005654 "nucleoplasm" evidence=IDA

GO:0009943 "adaxial/abaxial axis specification" evidence=IMP

UNIPROTKB|Q32SG3 LBD6 "LOB domain-containing protein 6" [Zea mays (taxid:4577)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 73/107 (68%), Positives = 90/107 (84%)

Query:     7 SNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDA 66
             + +PCAACK LRRKC PDCVFAPYFPP+ PQKFV+VH++FGASNV+KLLNE+ P QREDA
Sbjct:    30 TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDA 89

Query:    67 VNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRY 113
             VNSLAYEA+ RL+DPVYGCVG IS+LQ  + +LQ++L     +L +Y
Sbjct:    90 VNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKY 136

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2174989 ASL1 "ASYMMETRIC LEAVES 2-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 74/113 (65%), Positives = 91/113 (80%)

Query:     1 MASSSYSNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLP 60
             MASSS   +PCAACK LRRKC  +CVFAPYFPP++PQKF  VHK+FGASNV+KLLNE+  
Sbjct:     1 MASSS---SPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELAS 57

Query:    61 HQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRY 113
             +QREDAVNSL YEAEARL+DPVYGCVG IS+LQ ++ ++  +L+    +L  Y
Sbjct:    58 NQREDAVNSLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELATY 110

GO:0005634 "nucleus" evidence=ISM

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0009954 "proximal/distal pattern formation" evidence=IGI

GO:0048441 "petal development" evidence=IGI

TAIR|locus:2046817 LBD10 "LOB domain-containing protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 67/118 (56%), Positives = 91/118 (77%)

Query:     7 SNAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDA 66
             ++ PCAACK LRRKC  +CVFAPYFPP  PQKF+ VH++FGASNV+K+LN++ P QRED 
Sbjct:     2 ASTPCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQREDT 61

Query:    67 VNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYACNE--MPPQF 122
             VNSL YEAEAR++DP+YGCVG IS LQ+ + ++Q++L     +L+ Y   +  +PP +
Sbjct:    62 VNSLFYEAEARIRDPIYGCVGLISFLQQYLKKIQQDLLTAKEELVGYLGPDAVIPPPY 119

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2060842 ASL5 [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 66/104 (63%), Positives = 84/104 (80%)

Query:     8 NAPCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAV 67
             ++PCA+CK LRR+C  DC+FAPYFPP++P KF  VHK+FGASNVSK+L E+  HQR DAV
Sbjct:     6 SSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAV 65

Query:    68 NSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLI 111
             NSL +EA AR++DPVYGCVGAIS LQ QV +LQ +L    A+++
Sbjct:    66 NSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEIL 109

GO:0005634 "nucleus" evidence=ISM

GO:0003677 "DNA binding" evidence=TAS

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0010016 "shoot system morphogenesis" evidence=IMP

TAIR|locus:2061828 LBD15 "LOB domain-containing protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 72/127 (56%), Positives = 88/127 (69%)

Query:    10 PCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNS 69
             PCAACK LRR+C  +C F+PYF P EP KF +VHK+FGASNVSK+L EV   QR DA NS
Sbjct:    45 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANS 104

Query:    70 LAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYACNEMPPQFGARSDTN 129
             L YEA  RL+DPVYGC+GAIS LQ+QV  LQ EL A  +++++Y   E        S  N
Sbjct:   105 LVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPS--N 162

Query:   130 EQNSGFY 136
              Q +GF+
Sbjct:   163 SQVAGFH 169

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2197500 LBD4 "LOB domain-containing protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 65/103 (63%), Positives = 84/103 (81%)

Query:     9 APCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVN 68
             +PCAACK LRR+C  DCVF+PYFP +EPQKF NVH++FGASNV+K+L E+  HQR DAV+
Sbjct:    12 SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query:    69 SLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLI 111
             S+ YEA AR++DPVYGCVGAIS LQ+Q+  LQ +L    A+++
Sbjct:    72 SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVV 114

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2032931 ASL9 "ASYMMETRIC LEAVES 2-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 72/133 (54%), Positives = 90/133 (67%)

Query:     9 APCAACKCLRRKCMPD-CVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAV 67
             +PCA CK LRRKC+ D CVFAPYFP +EP KF  VHKIFGASNV+K+L E+  + R DAV
Sbjct:    13 SPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAV 72

Query:    68 NSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIR----YACNEMPPQFG 123
             +S+ YEA AR++DPVYGCVG IS L RQ+  LQ +L    A+LI     +  +  PP + 
Sbjct:    73 DSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLHRIHTKPPPYT 132

Query:   124 ARSDTNEQNSGFY 136
             A + T   N  FY
Sbjct:   133 ASTVTFPSNKDFY 145

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L8Q3	LBD25_ARATH	No assigned EC number	0.8558	0.7070	0.6981	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	157
pfam03195	101	pfam03195, DUF260, Protein of unknown function DUF	4e-54

>gnl|CDD|190559 pfam03195, DUF260, Protein of unknown function DUF260

 Score =  165 bits (421), Expect = 4e-54
 Identities = 66/101 (65%), Positives = 78/101 (77%)

Query: 10  PCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNS 69
           PCAACK LRRKC PDCV APYFP E+P +F NVHK+FGASNV+KLL  + P QR+DA+ S
Sbjct: 1   PCAACKHLRRKCPPDCVLAPYFPAEQPARFANVHKLFGASNVTKLLKALPPEQRDDAMRS 60

Query: 70  LAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADL 110
           L YEA+AR +DPVYGCVG I  LQ+Q+ +LQ EL    A L
Sbjct: 61  LLYEADARARDPVYGCVGVIWSLQQQLEQLQAELALVKAQL 101

Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	157
PF03195	101	DUF260: Protein of unknown function DUF260; InterP	100.0
COG3416	233	Uncharacterized protein conserved in bacteria [Fun	90.38
PF11333	83	DUF3135: Protein of unknown function (DUF3135); In	83.09
PF09849	247	DUF2076: Uncharacterized protein conserved in bact	80.06

>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function

Probab=100.00  E-value=6e-52  Score=309.06  Aligned_cols=101  Identities=65%  Similarity=1.168  Sum_probs=99.6

Q ss_pred             CChhhhhhhhCCCCCCccccCCCCCCchhhhHHHHhhccchHHHHHHhcCCcchHHHHHHHHHHHHhhccCCCCchhHHH
Q 031572           10 PCAACKCLRRKCMPDCVFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARLKDPVYGCVGAI   89 (157)
Q Consensus        10 ~CAACK~lRRkC~~~CilAPYFP~~~~~~F~~vhkvFG~sNv~k~L~~l~~~~R~~a~~SL~YEA~aR~rDPVyGc~G~I   89 (157)
                      +|||||||||||+++|+||||||++++++|++||||||++||+|||+++++++|+++|+||+|||++|.+||||||+|+|
T Consensus         1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i   80 (101)
T PF03195_consen    1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGII   80 (101)
T ss_pred             CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 031572           90 SVLQRQVMRLQRELDATNADL  110 (157)
Q Consensus        90 ~~Lq~qi~~lq~EL~~~~~~L  110 (157)
                      +.|++||+++++||+.++++|
T Consensus        81 ~~L~~ql~~~~~el~~~~~~l  101 (101)
T PF03195_consen   81 SQLQQQLQQLQAELALVRAQL  101 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHccC
Confidence            999999999999999999875

The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].

>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.38  E-value=3.6  Score=35.37  Aligned_cols=68  Identities=15%  Similarity=0.224  Sum_probs=58.1

Q ss_pred             hHHHHHHhcCCcchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 031572           50 NVSKLLNEVLPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIRYACNE  117 (157)
Q Consensus        50 Nv~k~L~~l~~~~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~~~~~~  117 (157)
                      |+..-|+......|+..++.||-||-++.-|--|=-+-.|..+++-|+.++.||+.++.+|+.....+
T Consensus        11 ~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~~~   78 (233)
T COG3416          11 NLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQAGE   78 (233)
T ss_pred             HHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            33444566667799999999999999999999999999999999999999999999999998775543

>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria

Probab=83.09  E-value=5.3  Score=29.07  Aligned_cols=66  Identities=17%  Similarity=0.307  Sum_probs=51.3

Q ss_pred             CCchhhhHHHHhhccchHHHHHHhcCCcch--HHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHH
Q 031572           34 EEPQKFVNVHKIFGASNVSKLLNEVLPHQR--EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQREL  103 (157)
Q Consensus        34 ~~~~~F~~vhkvFG~sNv~k~L~~l~~~~R--~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL  103 (157)
                      ++|+.|....+    .-+-.++...|++.+  -.++.+-|=---.|.++|+.-|+-+...++.++..+...|
T Consensus        15 ~dPe~fe~lr~----~~~ee~I~~a~~~~q~rL~~lQ~~Id~~~~~~knP~~~~~~l~~~m~~~~~~l~~~l   82 (83)
T PF11333_consen   15 NDPEAFEQLRQ----ELIEEMIESAPEEMQPRLRALQFHIDMQRSRCKNPLHRCVLLSRMMYEQFYKLNDAL   82 (83)
T ss_pred             hCHHHHHHHHH----HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHhh
Confidence            57888887654    456678888888654  4566666666678899999999999999999988887655

>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins

Probab=80.06  E-value=21  Score=30.78  Aligned_cols=63  Identities=19%  Similarity=0.238  Sum_probs=56.2

Q ss_pred             hHHHHHHhcCCcchHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031572           50 NVSKLLNEVLPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVMRLQRELDATNADLIR  112 (157)
Q Consensus        50 Nv~k~L~~l~~~~R~~a~~SL~YEA~aR~rDPVyGc~G~I~~Lq~qi~~lq~EL~~~~~~L~~  112 (157)
                      ++..-|+.+....|+.-++.||-|+-.|.-|-+|=-+-.|..++.-|++++++|+.++++|..
T Consensus        11 ~lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q   73 (247)
T PF09849_consen   11 DLFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ   73 (247)
T ss_pred             HHHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344557777778999999999999999999999999999999999999999999999999875

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	157
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	86.24

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=86.24  E-value=1  Score=26.83  Aligned_cols=27  Identities=22%  Similarity=0.498  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031572           87 GAISVLQRQVMRLQRELDATNADLIRY  113 (157)
Q Consensus        87 G~I~~Lq~qi~~lq~EL~~~~~~L~~~  113 (157)
                      |.|..|+++|..|+.|+++++-+++..
T Consensus         2 geiaalkqeiaalkkeiaalkfeiaal   28 (33)
T 4dzn_A            2 GEIAALKQEIAALKKEIAALKFEIAAL   28 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999999999988865

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00