Citrus Sinensis ID: 031602

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
MSRVIDDVAAAVNHLFDIPETMEKFTTPSRSPHQETNKSKGVSSIPVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISAKCENGVLTIVVEKLPPPPKPKTVEVAIS
ccccHHHHHHHHHHHcccHHHHHccccccccccccccccccccccccEEEEccccEEEEEEccccccccEEEEEEcccEEEEEEEEEEEEccccccccEEEEEEEEcccEEEEEEEcccccccccEEEEEEccEEEEEEccccccccccEEEEEcc
cccccccHHHHHHHHccccccccccccccccccccHHHHHHHHccccccccccccEEEEEEccccccccEEEEEcccEEEEEEccccccEEcccccccEEEEEEEEccccHEEEEEccccccHHHEEEEEcccEEEEEccccccccccEEEEEEEc
MSRVIDDVAAAVNHlfdipetmekfttpsrsphqetnkskgvssipvdildspkdyiffmdvpgrpksdiqvtvedertlvirsngkrkredgeeegckcirlerrVPQKLLRkfklpedanvSAISAKCENGVLTIVVeklppppkpktvevais
MSRVIDDVAAAVnhlfdipetmekfttpsrsphqetnkskgvssipvdILDSPKDYIFFMDVpgrpksdiqvtvedertlvirsngkrkredgeeegckcirlerrvpqkllrkfklpedanvsaisakceNGVLTIvveklppppkpktvevais
MSRVIDDVAAAVNHLFDIPETMEKFTTPSRSPHQETNKSKGVSSIPVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNgkrkredgeeegckcIRLERRVPQKLLRKFKLPEDANVSAISAKCENGVLTIVVEKLppppkpkTVEVAIS
******DVAAAVNHLFDI****************************VDILDSPKDYIFFMDVPG*******VT************************CKCIRLERRVPQKLLRKFKLPEDANVSAISAKCENGVLTIVV*****************
*******VAAAVNHLFDIPETMEKFTTPSRS******KSKGVSSIPVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTL*******************CIRLERRVPQKLLRKFKLPEDANVSAISAKCENGVLTIVV***********VEVAIS
MSRVIDDVAAAVNHLFDIPETMEK******************SSIPVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSN***********GCKCIRLERRVPQKLLRKFKLPEDANVSAISAKCENGVLTIVVEKLPPPP**********
**RVIDDVAAAVNHLFDIPETMEKFTT****PHQETNKSKGVSSIPVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISAKCENGVLTIVVEKLPPPPKPKTVEVAIS
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSRVIDDVAAAVNHLFDIPETMEKFTTPSRSPHQETNKSKGVSSIPVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISAKCENGVLTIVVEKLPPPPKPKTVEVAIS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query156 2.2.26 [Sep-21-2011]
Q9SYG1155 17.4 kDa class III heat s yes no 0.948 0.954 0.575 5e-41
Q6K7E9172 18.6 kDa class III heat s yes no 0.711 0.645 0.547 2e-25
P05477159 17.9 kDa class II heat sh no no 0.801 0.786 0.415 1e-20
Q01544155 17.2 kDa class II heat sh N/A no 0.801 0.806 0.451 4e-20
O81822156 17.7 kDa class II heat sh no no 0.692 0.692 0.394 1e-19
P46516160 17.9 kDa class II heat sh N/A no 0.788 0.768 0.409 3e-19
P29830155 17.6 kDa class II heat sh no no 0.788 0.793 0.365 4e-19
Q01545167 18.8 kDa class II heat sh N/A no 0.634 0.592 0.435 2e-17
Q5VRY1166 18.0 kDa class II heat sh no no 0.826 0.777 0.4 7e-17
P19242152 17.1 kDa class II heat sh N/A no 0.782 0.802 0.389 2e-16
>sp|Q9SYG1|HS174_ARATH 17.4 kDa class III heat shock protein OS=Arabidopsis thaliana GN=HSP17.4B PE=2 SV=1 Back     alignment and function desciption
 Score =  166 bits (420), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 88/153 (57%), Positives = 120/153 (78%), Gaps = 5/153 (3%)

Query: 9   AAAVNHLFDIPETMEKFTTPSRSPHQETNKSKGVSS---IPVDILDSPKDYIFFMDVPGR 65
           A A+NH F +PE +EK   P     +  N+S+G  S   IP+DIL+SPK+YIF++D+PG 
Sbjct: 3   AVAINHFFGLPEAIEKLILPISRSGESNNESRGRGSSNNIPIDILESPKEYIFYLDIPGI 62

Query: 66  PKSDIQVTVEDERTLVIRSNGKRKREDGE-EEGCKCIRLERRVPQKLLRKFKLPEDANVS 124
            KSDIQVTVE+ERTLVI+SNGKRKR+D E EEG K IRLERR+ Q L++KF+LPEDA+++
Sbjct: 63  SKSDIQVTVEEERTLVIKSNGKRKRDDDESEEGSKYIRLERRLAQNLVKKFRLPEDADMA 122

Query: 125 AISAKCENGVLTIVV-EKLPPPPKPKTVEVAIS 156
           +++AK + GVLT+V+ +  P PPKPKTV++A+S
Sbjct: 123 SVTAKYQEGVLTVVIKKLPPQPPKPKTVQIAVS 155

Arabidopsis thaliana (taxid: 3702)
>sp|Q6K7E9|HS186_ORYSJ 18.6 kDa class III heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.6 PE=2 SV=1 Back     alignment and function description
>sp|P05477|HSP21_SOYBN 17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1 Back     alignment and function description
>sp|Q01544|HSP21_IPONI 17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1 Back     alignment and function description
>sp|O81822|HS177_ARATH 17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1 Back     alignment and function description
>sp|P46516|HSP21_HELAN 17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1 Back     alignment and function description
>sp|P29830|HS176_ARATH 17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1 Back     alignment and function description
>sp|Q01545|HSP22_IPONI 18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1 Back     alignment and function description
>sp|Q5VRY1|HSP18_ORYSJ 18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1 Back     alignment and function description
>sp|P19242|HSP21_PEA 17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query156
356520108162 PREDICTED: 17.4 kDa class III heat shock 0.961 0.925 0.741 3e-58
255647557162 unknown [Glycine max] 0.961 0.925 0.735 2e-57
225442022160 PREDICTED: 17.4 kDa class III heat shock 0.948 0.925 0.7 8e-56
356559136161 PREDICTED: 17.4 kDa class III heat shock 0.987 0.956 0.711 2e-55
147782666 261 hypothetical protein VITISV_015797 [Viti 0.929 0.555 0.700 2e-55
255576559155 heat-shock protein, putative [Ricinus co 0.987 0.993 0.713 9e-52
224071005156 predicted protein [Populus trichocarpa] 0.993 0.993 0.719 2e-51
357514243150 17.4 kDa class III heat shock protein [M 0.923 0.96 0.666 4e-49
15148884144 small heat stress protein class CIII [So 0.923 1.0 0.666 2e-45
315932700174 HSP19 [Citrullus lanatus] 0.897 0.804 0.614 3e-43
>gi|356520108|ref|XP_003528707.1| PREDICTED: 17.4 kDa class III heat shock protein-like [Glycine max] Back     alignment and taxonomy information
 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 112/151 (74%), Positives = 131/151 (86%), Gaps = 1/151 (0%)

Query: 7   DVAAAVNHLFDIPETMEKFTTPSRSPHQETNKSKGVSSI-PVDILDSPKDYIFFMDVPGR 65
           D+AAAVN+LF++PETMEKF  PS   H   ++++GVSSI PVDILD+PK+Y FFMDVPG 
Sbjct: 12  DLAAAVNNLFNLPETMEKFMFPSSRAHDHHHETRGVSSIIPVDILDTPKEYTFFMDVPGL 71

Query: 66  PKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSA 125
            KS+IQVTVEDE TLVIRSNGKRKR+DGE+EGCK +RLERR PQ L RKF+LPE+ANVSA
Sbjct: 72  SKSEIQVTVEDENTLVIRSNGKRKRQDGEDEGCKYLRLERRGPQNLQRKFRLPENANVSA 131

Query: 126 ISAKCENGVLTIVVEKLPPPPKPKTVEVAIS 156
           I+AKCENGVLT+VVEK PPP K KTVEVAI+
Sbjct: 132 ITAKCENGVLTVVVEKHPPPQKSKTVEVAIA 162

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255647557|gb|ACU24242.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225442022|ref|XP_002268705.1| PREDICTED: 17.4 kDa class III heat shock protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|356559136|ref|XP_003547857.1| PREDICTED: 17.4 kDa class III heat shock protein-like [Glycine max] Back     alignment and taxonomy information
>gi|147782666|emb|CAN61792.1| hypothetical protein VITISV_015797 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255576559|ref|XP_002529170.1| heat-shock protein, putative [Ricinus communis] gi|223531348|gb|EEF33184.1| heat-shock protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224071005|ref|XP_002303326.1| predicted protein [Populus trichocarpa] gi|222840758|gb|EEE78305.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357514243|ref|XP_003627410.1| 17.4 kDa class III heat shock protein [Medicago truncatula] gi|355521432|gb|AET01886.1| 17.4 kDa class III heat shock protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|15148884|gb|AAK84869.1|AF399821_1 small heat stress protein class CIII [Solanum peruvianum] Back     alignment and taxonomy information
>gi|315932700|gb|ADU55780.1| HSP19 [Citrullus lanatus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query156
TAIR|locus:2014410155 AT1G54050 "AT1G54050" [Arabido 0.948 0.954 0.477 4.7e-32
UNIPROTKB|Q6K7E9172 HSP18.6 "18.6 kDa class III he 0.615 0.558 0.495 5.7e-20
UNIPROTKB|Q5VRY1166 HSP18.0 "18.0 kDa class II hea 0.839 0.789 0.372 5.3e-17
TAIR|locus:2143109155 HSP17.6II "17.6 kDa class II h 0.846 0.851 0.296 8.8e-15
TAIR|locus:2143024156 HSP17.6A "heat shock protein 1 0.826 0.826 0.306 8.8e-15
TAIR|locus:2174269161 HSP18.2 "heat shock protein 18 0.769 0.745 0.328 2.2e-11
TAIR|locus:2075256156 HSP17.4 "heat shock protein 17 0.775 0.775 0.309 5.8e-11
TAIR|locus:2024862157 AT1G53540 [Arabidopsis thalian 0.782 0.777 0.309 2e-10
UNIPROTKB|P27777150 HSP16.9A "16.9 kDa class I hea 0.737 0.766 0.314 2.5e-10
UNIPROTKB|Q943E6150 HSP16.9B "16.9 kDa class I hea 0.737 0.766 0.314 2.5e-10
TAIR|locus:2014410 AT1G54050 "AT1G54050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 73/153 (47%), Positives = 104/153 (67%)

Query:     9 AAAVNHLFDIPETMEKFTTPSRSPHQETNKSKGVSS---IPVDILDSPKDYIFFMDVPGR 65
             A A+NH F +PE +EK   P     +  N+S+G  S   IP+DIL+SPK+YIF++D+PG 
Sbjct:     3 AVAINHFFGLPEAIEKLILPISRSGESNNESRGRGSSNNIPIDILESPKEYIFYLDIPGI 62

Query:    66 PKSDIQVTVEDERTLVIRSNXXXXXXXXXXXXXXX-IRLERRVPQKLLRKFKLPEDANVS 124
              KSDIQVTVE+ERTLVI+SN                IRLERR+ Q L++KF+LPEDA+++
Sbjct:    63 SKSDIQVTVEEERTLVIKSNGKRKRDDDESEEGSKYIRLERRLAQNLVKKFRLPEDADMA 122

Query:   125 AISAKCENGVLTIVVEKLXXXXXX-XTVEVAIS 156
             +++AK + GVLT+V++KL        TV++A+S
Sbjct:   123 SVTAKYQEGVLTVVIKKLPPQPPKPKTVQIAVS 155
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0009408 "response to heat" evidence=IEP;ISS;RCA
GO:0009644 "response to high light intensity" evidence=IEP;RCA
GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA
GO:0006457 "protein folding" evidence=RCA
UNIPROTKB|Q6K7E9 HSP18.6 "18.6 kDa class III heat shock protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q5VRY1 HSP18.0 "18.0 kDa class II heat shock protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2143109 HSP17.6II "17.6 kDa class II heat shock protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143024 HSP17.6A "heat shock protein 17.6A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174269 HSP18.2 "heat shock protein 18.2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075256 HSP17.4 "heat shock protein 17.4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024862 AT1G53540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P27777 HSP16.9A "16.9 kDa class I heat shock protein 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q943E6 HSP16.9B "16.9 kDa class I heat shock protein 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6K7E9HS186_ORYSJNo assigned EC number0.54700.71150.6453yesno
Q9SYG1HS174_ARATHNo assigned EC number0.57510.94870.9548yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00034024001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (160 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query156
cd0646488 cd06464, ACD_sHsps-like, Alpha-crystallin domain ( 2e-20
cd0647292 cd06472, ACD_ScHsp26_like, Alpha crystallin domain 8e-20
COG0071146 COG0071, IbpA, Molecular chaperone (small heat sho 1e-19
pfam00011101 pfam00011, HSP20, Hsp20/alpha crystallin family 1e-19
cd0029880 cd00298, ACD_sHsps_p23-like, This domain family in 2e-14
cd0647193 cd06471, ACD_LpsHSP_like, Group of bacterial prote 3e-13
cd0647090 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain 2e-04
cd0652683 cd06526, metazoan_ACD, Alpha-crystallin domain (AC 6e-04
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information 
 Score = 79.5 bits (197), Expect = 2e-20
 Identities = 39/94 (41%), Positives = 51/94 (54%), Gaps = 6/94 (6%)

Query: 48  DILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRV 107
           D+ ++   Y+   D+PG  K DI+V VED   L I   G+R+ E  EEE    +R ER  
Sbjct: 1   DVYETDDAYVVEADLPGFKKEDIKVEVED-GVLTIS--GEREEE--EEEEENYLRRERS- 54

Query: 108 PQKLLRKFKLPEDANVSAISAKCENGVLTIVVEK 141
                R F+LPED +   I A  ENGVLTI + K
Sbjct: 55  YGSFSRSFRLPEDVDPDKIKASLENGVLTITLPK 88

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. Length = 88
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family Back     alignment and domain information
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 156
PRK10743137 heat shock protein IbpA; Provisional 99.97
PRK11597142 heat shock chaperone IbpB; Provisional 99.97
COG0071146 IbpA Molecular chaperone (small heat shock protein 99.96
cd0647292 ACD_ScHsp26_like Alpha crystallin domain (ACD) fou 99.94
cd0647193 ACD_LpsHSP_like Group of bacterial proteins contai 99.93
PF00011102 HSP20: Hsp20/alpha crystallin family This prints e 99.92
cd0647090 ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun 99.92
cd0649786 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai 99.9
cd0647981 ACD_HspB7_like Alpha crystallin domain (ACD) found 99.89
cd0647883 ACD_HspB4-5-6 Alpha-crystallin domain found in alp 99.88
cd0649884 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai 99.88
cd0647586 ACD_HspB1_like Alpha crystallin domain (ACD) found 99.87
cd0647683 ACD_HspB2_like Alpha crystallin domain (ACD) found 99.87
cd0648187 ACD_HspB9_like Alpha crystallin domain (ACD) found 99.86
cd0646488 ACD_sHsps-like Alpha-crystallin domain (ACD) of al 99.85
cd0648287 ACD_HspB10 Alpha crystallin domain (ACD) found in 99.85
cd0647783 ACD_HspB3_Like Alpha crystallin domain (ACD) found 99.84
cd0652683 metazoan_ACD Alpha-crystallin domain (ACD) of meta 99.84
KOG0710196 consensus Molecular chaperone (small heat-shock pr 99.75
cd0648091 ACD_HspB8_like Alpha-crystallin domain (ACD) found 99.74
KOG3591173 consensus Alpha crystallins [Posttranslational mod 99.68
cd0029880 ACD_sHsps_p23-like This domain family includes the 99.55
cd0646978 p23_DYX1C1_like p23_like domain found in proteins 99.38
PF05455177 GvpH: GvpH; InterPro: IPR008633 This family consis 99.19
cd0646384 p23_like Proteins containing this p23_like domain 99.09
cd0646684 p23_CS_SGT1_like p23_like domain similar to the C- 98.83
PF0496979 CS: CS domain; InterPro: IPR017447 The function of 98.62
cd06465108 p23_hB-ind1_like p23_like domain found in human (h 98.32
PF08190328 PIH1: pre-RNA processing PIH1/Nop17 98.26
cd0646785 p23_NUDC_like p23_like domain of NUD (nuclear dist 98.09
cd0648984 p23_CS_hSgt1_like p23_like domain similar to the C 98.08
cd0649385 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear 97.94
cd0646892 p23_CacyBP p23_like domain found in proteins simil 97.94
cd0649493 p23_NUDCD2_like p23-like NUD (nuclear distribution 97.89
cd0648887 p23_melusin_like p23_like domain similar to the C- 97.81
cd00237106 p23 p23 binds heat shock protein (Hsp)90 and parti 97.42
cd0649287 p23_mNUDC_like p23-like NUD (nuclear distribution) 96.78
PLN03088 356 SGT1, suppressor of G2 allele of SKP1; Provisional 96.75
KOG1309 196 consensus Suppressor of G2 allele of skp1 [Signal 96.75
cd06495102 p23_NUDCD3_like p23-like NUD (nuclear distribution 96.41
cd0649087 p23_NCB5OR p23_like domain found in NAD(P)H cytoch 96.3
KOG2265179 consensus Nuclear distribution protein NUDC [Signa 93.25
cd0648287 ACD_HspB10 Alpha crystallin domain (ACD) found in 87.4
cd0647783 ACD_HspB3_Like Alpha crystallin domain (ACD) found 86.08
KOG3158180 consensus HSP90 co-chaperone p23 [Posttranslationa 85.89
cd0647090 ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun 84.93
cd0647683 ACD_HspB2_like Alpha crystallin domain (ACD) found 84.77
cd0649786 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai 84.66
cd0647883 ACD_HspB4-5-6 Alpha-crystallin domain found in alp 84.59
PRK10743137 heat shock protein IbpA; Provisional 84.52
cd0647193 ACD_LpsHSP_like Group of bacterial proteins contai 82.53
PRK11597142 heat shock chaperone IbpB; Provisional 82.45
cd0647981 ACD_HspB7_like Alpha crystallin domain (ACD) found 82.23
cd0652683 metazoan_ACD Alpha-crystallin domain (ACD) of meta 81.0
COG5091368 SGT1 Suppressor of G2 allele of skp1 and related p 80.15
>PRK10743 heat shock protein IbpA; Provisional Back     alignment and domain information 
Probab=99.97  E-value=9.9e-31  Score=186.55  Aligned_cols=131  Identities=21%  Similarity=0.371  Sum_probs=106.2

Q ss_pred             HhhhhhcchHHhhhhcCCCCCCCcccCCCCCcccceeeEEE-CCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEe
Q 031602           11 AVNHLFDIPETMEKFTTPSRSPHQETNKSKGVSSIPVDILD-SPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRK   89 (156)
Q Consensus        11 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~p~~~i~e-~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~   89 (156)
                      .|.+|..+...||++|+..+....    ......|++||++ ++++|.|.++|||++++||+|.+++ +.|+|+  |+++
T Consensus         5 ~~~~~~~~~~~~d~lf~~~~~~~~----~~~~~~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~-~~LtI~--ge~~   77 (137)
T PRK10743          5 DLSPLYRSAIGFDRLFNLLENNQS----QSNGGYPPYNVELVDENHYRIAIAVAGFAESELEITAQD-NLLVVK--GAHA   77 (137)
T ss_pred             ccChhhhcccCHHHHhhhhhhhhh----cccCCCCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEEC-CEEEEE--EEEC
Confidence            566666777788888876654331    1111348999994 8999999999999999999999999 799999  6655


Q ss_pred             ccCCccccceEEEeeeeeCCeEEEEEECCCCcccCceEEEEeCcEEEEEEecCCC-CCCCeEEEEe
Q 031602           90 REDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISAKCENGVLTIVVEKLPP-PPKPKTVEVA  154 (156)
Q Consensus        90 ~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v~~~~i~A~~~~GvL~I~~pK~~~-~~~~~~I~I~  154 (156)
                      .+   .++..|+++|+.+ |+|+|+|.||++|+.++  |+|+||||+|++||..+ ..++|+|+|+
T Consensus        78 ~~---~~~~~~~~~Er~~-g~F~R~~~LP~~Vd~~~--A~~~dGVL~I~lPK~~~~~~~~r~I~I~  137 (137)
T PRK10743         78 DE---QKERTYLYQGIAE-RNFERKFQLAENIHVRG--ANLVNGLLYIDLERVIPEAKKPRRIEIN  137 (137)
T ss_pred             cc---ccCCcEEEEEEEC-CEEEEEEECCCCcccCc--CEEeCCEEEEEEeCCCccccCCeEEeeC
Confidence            43   3456799999998 99999999999999994  99999999999999743 4678999985

>PRK11597 heat shock chaperone IbpB; Provisional Back     alignment and domain information
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry Back     alignment and domain information
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa) Back     alignment and domain information
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins Back     alignment and domain information
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20 Back     alignment and domain information
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa) Back     alignment and domain information
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins Back     alignment and domain information
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins Back     alignment and domain information
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins Back     alignment and domain information
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins Back     alignment and domain information
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins Back     alignment and domain information
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21 Back     alignment and domain information
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1 Back     alignment and domain information
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [] Back     alignment and domain information
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1 Back     alignment and domain information
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1) Back     alignment and domain information
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown Back     alignment and domain information
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins Back     alignment and domain information
>PF08190 PIH1: pre-RNA processing PIH1/Nop17 Back     alignment and domain information
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins Back     alignment and domain information
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins Back     alignment and domain information
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins Back     alignment and domain information
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP) Back     alignment and domain information
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins Back     alignment and domain information
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins Back     alignment and domain information
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor Back     alignment and domain information
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms] Back     alignment and domain information
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins Back     alignment and domain information
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins Back     alignment and domain information
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms] Back     alignment and domain information
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins Back     alignment and domain information
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins Back     alignment and domain information
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins Back     alignment and domain information
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa) Back     alignment and domain information
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20 Back     alignment and domain information
>PRK10743 heat shock protein IbpA; Provisional Back     alignment and domain information
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>PRK11597 heat shock chaperone IbpB; Provisional Back     alignment and domain information
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins Back     alignment and domain information
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query156
2byu_A101 Negative Stain Em Reconstruction Of M.Tuberculosis 2e-05
2h50_A93 Multiple Distinct Assemblies Reveal Conformational 2e-05
1gme_A151 Crystal Structure And Assembly Of An Eukaryotic Sma 2e-05
3gla_A100 Crystal Structure Of The Hspa From Xanthomonas Axon 1e-04
3gt6_A103 Crystal Structure Of The Hspa From Xanthomonas Axon 1e-04
>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer Length = 101 Back     alignment and structure 
Iteration: 1

 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 47  VDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNXXXXXXXXXXXXXXXIRLERR 106
           +D  ++P+ ++F  D+PG  K +++V VED   LV+                   R+ER 
Sbjct: 4   MDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWH---RVERS 60
Query: 107 VPQKLLRKFKLPEDANVSAISAKCENGVLTIVVEK 141
              K +R+F+L EDA V  + A  ENGVLT+ V K
Sbjct: 61  -SGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPK 94
>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational Flexibility In The Small Heat Shock Protein Hsp26 Length = 93 Back     alignment and structure
>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat Shock Protein Length = 151 Back     alignment and structure
>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis Length = 100 Back     alignment and structure
>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis Length = 103 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query156
1gme_A151 Heat shock protein 16.9B; small heat shock protein 1e-32
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 1e-24
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 5e-23
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 6e-21
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 6e-13
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 7e-12
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 2e-11
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 9e-10
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 1e-09
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 1e-08
2bol_A 314 TSP36, small heat shock protein; A-crystallin, mol 3e-07
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Length = 151 Back     alignment and structure
 Score =  112 bits (282), Expect = 1e-32
 Identities = 45/144 (31%), Positives = 77/144 (53%), Gaps = 7/144 (4%)

Query: 13  NHLFDIPETMEKFTTPSRSPHQETNKSKGVSSIPVDILDSPKDYIFFMDVPGRPKSDIQV 72
             L+  P   + F +   +     +++   ++  +D  ++P+ ++F  D+PG  K +++V
Sbjct: 14  ADLWADP--FDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKV 71

Query: 73  TVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISAKCEN 132
            VED   LV+   G+R +E  E++  K  R+ER    K +R+F+L EDA V  + A  EN
Sbjct: 72  EVEDGNVLVVS--GERTKEK-EDKNDKWHRVERSS-GKFVRRFRLLEDAKVEEVKAGLEN 127

Query: 133 GVLTIVVEKLPPPPKPKTVEVAIS 156
           GVLT+ V K     KP+   + IS
Sbjct: 128 GVLTVTVPKA-EVKKPEVKAIQIS 150
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Length = 100 Back     alignment and structure
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Length = 161 Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Length = 123 Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Length = 175 Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Length = 101 Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Length = 106 Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Length = 90 Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Length = 85 Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314 Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query156
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 99.97
1gme_A151 Heat shock protein 16.9B; small heat shock protein 99.96
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 99.96
4fei_A102 Heat shock protein-related protein; stress respons 99.95
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 99.94
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 99.93
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 99.92
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 99.91
2bol_A 314 TSP36, small heat shock protein; A-crystallin, mol 99.9
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 99.89
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 99.87
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 99.83
2xcm_C92 SGT1-like protein, cytosolic heat shock protein 90 99.12
1rl1_A114 Suppressor of G2 allele of SKP1 homolog; beta sand 99.11
2k8q_A134 Protein SHQ1; beta-sandwich, CS domain, nucleus, s 98.57
3eud_A115 Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A 98.52
3igf_A374 ALL4481 protein; two-domained protein consisting o 98.41
3qor_A121 Nuclear migration protein NUDC; beta-sandwich, cha 98.09
1x5m_A127 Calcyclin-binding protein; CS domain, structural g 98.03
1wh0_A134 Ubiquitin carboxyl-terminal hydrolase 19; USP, CS 97.95
1wfi_A131 Nuclear distribution gene C homolog; NUDC, riken s 97.92
1wgv_A124 KIAA1068 protein; CS domain, HSP20-like fold, stru 97.92
2o30_A131 Nuclear movement protein; MCSG, structural genomic 97.87
2rh0_A157 NUDC domain-containing protein 2; 13542905, nuclea 97.84
1ejf_A125 Progesterone receptor P23; chaperone, CO-chaperone 97.73
2kmw_A150 Uncharacterized protein AT3G03773; protein structu 97.33
2cg9_X134 CO-chaperone protein SBA1; chaperone complex, HSP9 97.21
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 88.91
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 84.72
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 84.22
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 83.49
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 82.56
4fei_A102 Heat shock protein-related protein; stress respons 80.93
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 80.34
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Back     alignment and structure
Probab=99.97  E-value=1.8e-30  Score=189.20  Aligned_cols=105  Identities=29%  Similarity=0.391  Sum_probs=92.9

Q ss_pred             cceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeee-eeCCeEEEEEECCCCcc
Q 031602           44 SIPVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLER-RVPQKLLRKFKLPEDAN  122 (156)
Q Consensus        44 ~p~~~i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~-~~~~~f~r~~~LP~~v~  122 (156)
                      .+++||+|++++|+|.++|||++++||+|++++ +.|+|+  |+++.. ...++..|++.|| .+ |.|+|+|.||.+||
T Consensus        56 ~~pvdi~e~~~~~~v~~dlPG~~~edi~V~~~~-~~L~I~--g~~~~~-~~~~~~~~~~~Er~~~-g~f~R~~~LP~~vd  130 (161)
T 4eld_A           56 FMPISIIEGDQHIKVIAWLPGVNKEDIILNAVG-DTLEIR--AKRSPL-MITESERIIYSEIPEE-EEIYRTIKLPATVK  130 (161)
T ss_dssp             CCCEEEEECSSEEEEEEECTTCCGGGEEEEEET-TEEEEE--EECCCC-CCCSSCEEEEECSCCC-CEEEEEEECSSCBC
T ss_pred             ccceeEEEeCCEEEEEEECCCCChHhEEEEEEC-CEEEEE--EEEccc-ccCCCceEEEEEeecc-ccEEEEEECCCCcc
Confidence            455999999999999999999999999999999 799999  666554 2334567999999 87 99999999999999


Q ss_pred             cCceEEEEeCcEEEEEEecCCCCCCCeEEEEe
Q 031602          123 VSAISAKCENGVLTIVVEKLPPPPKPKTVEVA  154 (156)
Q Consensus       123 ~~~i~A~~~~GvL~I~~pK~~~~~~~~~I~I~  154 (156)
                      .++|+|+|+||||+|++||. +.+++|+|+|+
T Consensus       131 ~~~i~A~~~nGvL~I~lpK~-~~~~~r~I~Ie  161 (161)
T 4eld_A          131 EENASAKFENGVLSVILPKA-ESSIKKGINIE  161 (161)
T ss_dssp             GGGCEEEEETTEEEEEEEBC-GGGSCCCCCCC
T ss_pred             cccEEEEEECCEEEEEEEcC-CCCCCcEeecC
Confidence            99999999999999999998 45678999885
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Back     alignment and structure
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Back     alignment and structure
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans} Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Back     alignment and structure
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP} Back     alignment and structure
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A Back     alignment and structure
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4 Back     alignment and structure
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Back     alignment and structure
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Back     alignment and structure
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus} Back     alignment and structure
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Back     alignment and structure
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Back     alignment and structure
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Back     alignment and structure
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans} Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 156
d1gmea_150 b.15.1.1 (A:) Small heat shock protein {Wheat (Tri 6e-20
d1shsa_115 b.15.1.1 (A:) Small heat shock protein {Archaeon M 7e-18
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 150 Back     information, alignment and structure

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score = 78.7 bits (193), Expect = 6e-20
 Identities = 39/143 (27%), Positives = 73/143 (51%), Gaps = 7/143 (4%)

Query: 13  NHLFDIPETMEKFTTPSRSPHQETNKSKGVSSIPVDILDSPKDYIFFMDVPGRPKSDIQV 72
             L+  P   + F +   +     +++   ++  +D  ++P+ ++F  D+PG  K +++V
Sbjct: 13  ADLWADP--FDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKV 70

Query: 73  TVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDANVSAISAKCEN 132
            VED   LV+   G+R +E  ++          R   K +R+F+L EDA V  + A  EN
Sbjct: 71  EVEDGNVLVVS--GERTKEKEDKNDKWHRV--ERSSGKFVRRFRLLEDAKVEEVKAGLEN 126

Query: 133 GVLTIVVEKLPPP-PKPKTVEVA 154
           GVLT+ V K     P+ K ++++
Sbjct: 127 GVLTVTVPKAEVKKPEVKAIQIS 149
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query156
d1gmea_150 Small heat shock protein {Wheat (Triticum aestivum 99.96
d1shsa_115 Small heat shock protein {Archaeon Methanococcus j 99.95
d1rl1a_92 Suppressor of G2 allele of skp1 homolog, gst1 {Hum 98.51
d1ejfa_110 Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960 97.68
d1wfia_131 Nuclear migration protein nudC {Mouse (Mus musculu 97.63
d1wh0a_134 Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H 97.34
d1wgva_124 NudC domain containing protein 3, NUDCD3 (KIAA1068 97.33
d1vqoe179 Ribosomal protein L6 {Archaeon Haloarcula marismor 85.24
d1rl6a175 Ribosomal protein L6 {Bacillus stearothermophilus 84.54
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=99.96  E-value=2.4e-30  Score=184.89  Aligned_cols=109  Identities=38%  Similarity=0.607  Sum_probs=92.2

Q ss_pred             cccceeeEEECCCeEEEEEEcCCCCCCCeEEEEecCcEEEEEeCcEEeccCCccccceEEEeeeeeCCeEEEEEECCCCc
Q 031602           42 VSSIPVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSNGKRKREDGEEEGCKCIRLERRVPQKLLRKFKLPEDA  121 (156)
Q Consensus        42 ~~~p~~~i~e~~~~~~l~~~lpG~~~edi~V~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~r~~~LP~~v  121 (156)
                      ...|+++|.|++++|+|+++|||++++||+|++++++.|+|+  |+++.+ ...++..|+.+|+.+ |.|+|+|.||.+|
T Consensus        40 ~~~p~~dv~e~~~~~~i~~~lPG~~~edi~v~v~~~~~l~i~--~~~~~~-~~~~~~~~~~~e~~~-~~f~r~~~LP~~v  115 (150)
T d1gmea_          40 FANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVS--GERTKE-KEDKNDKWHRVERSS-GKFVRRFRLLEDA  115 (150)
T ss_dssp             HGGGCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEE--ECCCCC-CCCTTCEEEECCCCC-CCEEEEEECSSCC
T ss_pred             cCCCceeEEECCCEEEEEEEeCCCccCCEEEEEEEccceeEE--EEEecc-cccccceeeeeeecc-ceEEEEEECCCCe
Confidence            457899999999999999999999999999999875688998  445444 345667899999998 9999999999999


Q ss_pred             ccCceEEEEeCcEEEEEEecCCCCCCCeEEEEec
Q 031602          122 NVSAISAKCENGVLTIVVEKLPPPPKPKTVEVAI  155 (156)
Q Consensus       122 ~~~~i~A~~~~GvL~I~~pK~~~~~~~~~I~I~~  155 (156)
                      |.++|+|+|+||+|+|++||..+ .+++.+.|+|
T Consensus       116 d~~~i~A~~~nGvL~I~lpK~~~-~~~~~~~I~I  148 (150)
T d1gmea_         116 KVEEVKAGLENGVLTVTVPKAEV-KKPEVKAIQI  148 (150)
T ss_dssp             CGGGCEEEEETTEEEEEEECCCC-CTTCCCCCCC
T ss_pred             eeceeEEEEECCEEEEEEEcCCc-CCCCceEEec
Confidence            99999999999999999999843 3444444443
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure