Citrus Sinensis ID: 031612

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
MGDHNFQHNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQVRSRTRDEDHDSNSEDINKLLFSAIVQGN
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHEEccc
Coil and Loop (DISEMBL)
mgdhnfqhNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQqiypdnanpmKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLdipvanesedasfaNFKQVIDEWTVQVrsrtrdedhdsnseDINKLLFSAIVQGN
Flexible Loop (DISEMBL)
mgdhnfqhNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQVRsrtrdedhdsnsedinkLLFSAIVQGN
Low Complexity Region (SEG)
MGDHNFQHNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQVRSRTRDEDHDSNSEDINKLLFSAIVQGN
Disordered region (IsUnstruct)
**********QAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQV****************************
Disordered Region (DISOPRED)
*************DGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAA*QDLIDKASAILVRNRNLVQRM*************DASFANFKQVIDEWT******************INKLLFSAIVQ**
Disordered Region (DISEMBL)
********NHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQV************SEDINKLLFSAIVQGN
Disordered Region (DISPRO)
***HNFQHNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQVRSRTR***HDSNSEDINKLLFSAIVQGN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGDHNFQHNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRxxxxxxxxxxxxxxxxxxxxxKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQVRSRTRDEDHDSNSEDINKLLFSAIVQGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
356563983	151	PREDICTED: uncharacterized protein LOC10	0.935	0.966	0.748	7e-57
224143355	154	predicted protein [Populus trichocarpa]	0.987	1.0	0.698	3e-56
225430535	153	PREDICTED: uncharacterized protein LOC10	0.961	0.980	0.706	4e-56
351724753	151	uncharacterized protein LOC100500198 [Gl	0.935	0.966	0.727	3e-55
255548676	152	conserved hypothetical protein [Ricinus	0.955	0.980	0.718	4e-55
357437083	151	hypothetical protein MTR_1g013640 [Medic	0.935	0.966	0.673	8e-50
449455497	158	PREDICTED: uncharacterized protein LOC10	0.993	0.981	0.582	8e-49
297825521	152	hypothetical protein ARALYDRAFT_481350 [	0.948	0.973	0.604	8e-46
18400687	152	uncharacterized protein [Arabidopsis tha	0.948	0.973	0.583	2e-44
116779820	157	unknown [Picea sitchensis]	0.961	0.955	0.470	7e-33

>gi|356563983|ref|XP_003550236.1| PREDICTED: uncharacterized protein LOC100803755 [Glycine max]

 Score =  224 bits (572), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 110/147 (74%), Positives = 125/147 (85%), Gaps = 1/147 (0%)

Query: 10  HQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQC 69
           HQA DGL+NL TK+NH+L+MV ++LEKEFQQ+YPDNANPMKLVSRIKK+QED+ ILK QC
Sbjct: 6   HQATDGLLNLFTKANHDLSMVHHRLEKEFQQVYPDNANPMKLVSRIKKIQEDITILKGQC 65

Query: 70  RELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQVR 129
            ELLAAKQDLIDKA  ILV NRNLVQRMQ SL I    E +DA+F NFKQVI+EWT QVR
Sbjct: 66  HELLAAKQDLIDKAQRILVENRNLVQRMQPSLGISRTGE-DDAAFTNFKQVIEEWTAQVR 124

Query: 130 SRTRDEDHDSNSEDINKLLFSAIVQGN 156
           S+T +E HDS+S DINKLLFSAIVQ N
Sbjct: 125 SKTGNETHDSDSGDINKLLFSAIVQSN 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143355|ref|XP_002324927.1| predicted protein [Populus trichocarpa] gi|222866361|gb|EEF03492.1| predicted protein [Populus trichocarpa]

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 109/156 (69%), Positives = 130/156 (83%), Gaps = 2/156 (1%)

Query: 1   MGDHNFQHNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQE 60
           MG H   H HQA D LVNL TK+N++LT+VQ KLE+EFQQIYPDNANP+KLV+RIKKVQ 
Sbjct: 1   MG-HRHVH-HQATDSLVNLFTKANNDLTLVQLKLEREFQQIYPDNANPVKLVNRIKKVQG 58

Query: 61  DLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQV 120
           DL +LK QC+ELLAAKQDLIDKA  +LV NRNL+QRM+VS+ + V  ++ED +F NF Q+
Sbjct: 59  DLTVLKGQCQELLAAKQDLIDKARTVLVGNRNLIQRMEVSIGVDVTGDAEDPAFVNFNQI 118

Query: 121 IDEWTVQVRSRTRDEDHDSNSEDINKLLFSAIVQGN 156
           IDEWT QVR+RT DE HDS++EDINKLLFSAIVQ N
Sbjct: 119 IDEWTTQVRARTGDEKHDSDAEDINKLLFSAIVQNN 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430535|ref|XP_002285577.1| PREDICTED: uncharacterized protein LOC100264643 [Vitis vinifera]

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 106/150 (70%), Positives = 129/150 (86%)

Query: 7   QHNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILK 66
           Q +H+A+DGL+NL TK+NH+LT+VQ++LEKEFQQIYP NANPM LVSRIKK+QEDL  LK
Sbjct: 4   QQHHEAMDGLLNLFTKANHDLTLVQHRLEKEFQQIYPHNANPMILVSRIKKLQEDLCSLK 63

Query: 67  EQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTV 126
           EQC+ELLAAKQDLIDKA   LV NR+L+QRMQ  + IP+A++S+D ++ANF Q+IDEWT 
Sbjct: 64  EQCQELLAAKQDLIDKARTTLVGNRSLLQRMQAPMGIPLASDSDDPAYANFNQIIDEWTN 123

Query: 127 QVRSRTRDEDHDSNSEDINKLLFSAIVQGN 156
           QVRSRT D  H+S SEDINK+LFSAIVQ N
Sbjct: 124 QVRSRTGDVTHESESEDINKMLFSAIVQSN 153

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724753|ref|NP_001238348.1| uncharacterized protein LOC100500198 [Glycine max] gi|255629657|gb|ACU15176.1| unknown [Glycine max]

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 107/147 (72%), Positives = 125/147 (85%), Gaps = 1/147 (0%)

Query: 10  HQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQC 69
           HQA DGL++L TK+NH+L+MV ++LEKEFQQ+YPDNANPMKLVSRIKKVQED+ ILK QC
Sbjct: 6   HQATDGLLSLFTKANHDLSMVHHRLEKEFQQVYPDNANPMKLVSRIKKVQEDISILKGQC 65

Query: 70  RELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQVR 129
            ELLAAKQDLIDKA  +LV NRNLVQRMQ SL I  + E +DA+F NFKQVI+EWT QVR
Sbjct: 66  HELLAAKQDLIDKAQRVLVENRNLVQRMQPSLGISPSGE-DDATFTNFKQVIEEWTAQVR 124

Query: 130 SRTRDEDHDSNSEDINKLLFSAIVQGN 156
           S+T +E HD++S  INKLLFSAIVQ N
Sbjct: 125 SKTGNETHDADSGYINKLLFSAIVQSN 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548676|ref|XP_002515394.1| conserved hypothetical protein [Ricinus communis] gi|223545338|gb|EEF46843.1| conserved hypothetical protein [Ricinus communis]

 Score =  219 bits (557), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 107/149 (71%), Positives = 121/149 (81%)

Query: 8   HNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKE 67
           H+HQA D +VNLL K+NH+L +VQ KLEKEFQQ+YPDNANPMKLV+RIKK+QEDL ILKE
Sbjct: 4   HSHQAADNVVNLLKKANHDLILVQLKLEKEFQQVYPDNANPMKLVNRIKKIQEDLSILKE 63

Query: 68  QCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQ 127
           QC ELLAAKQDLIDKA   LV NRN +QRMQ S+ IP+    ED +FANF Q+IDEWT Q
Sbjct: 64  QCGELLAAKQDLIDKARTSLVGNRNQIQRMQASVRIPLTTVDEDPAFANFNQIIDEWTAQ 123

Query: 128 VRSRTRDEDHDSNSEDINKLLFSAIVQGN 156
           VRSRT DE  +S SEDIN LLFSAIV  N
Sbjct: 124 VRSRTGDEGQNSESEDINNLLFSAIVHSN 152

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437083|ref|XP_003588817.1| hypothetical protein MTR_1g013640 [Medicago truncatula] gi|355477865|gb|AES59068.1| hypothetical protein MTR_1g013640 [Medicago truncatula]

 Score =  201 bits (511), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 99/147 (67%), Positives = 120/147 (81%), Gaps = 1/147 (0%)

Query: 10  HQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQC 69
           ++A DGLV L  K+NH+L +V ++L+ EFQQ YP+NANPMKLVSRIKK+QE++ ILK QC
Sbjct: 6   NEATDGLVKLFRKANHDLDIVHHRLQTEFQQQYPENANPMKLVSRIKKIQEEISILKGQC 65

Query: 70  RELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQVR 129
            ELLAAKQDLIDKA  +LV NRNLVQRMQ S+ IP  +E +DA F NFKQVIDEWT Q+R
Sbjct: 66  HELLAAKQDLIDKAQTVLVENRNLVQRMQSSVGIPFTSEDDDA-FTNFKQVIDEWTDQIR 124

Query: 130 SRTRDEDHDSNSEDINKLLFSAIVQGN 156
           S+T +E  DS+S D+NKLLFSAIVQ N
Sbjct: 125 SKTGNEPQDSDSGDLNKLLFSAIVQSN 151

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455497|ref|XP_004145489.1| PREDICTED: uncharacterized protein LOC101210123 [Cucumis sativus] gi|449485208|ref|XP_004157100.1| PREDICTED: uncharacterized LOC101210123 [Cucumis sativus]

 Score =  198 bits (503), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 92/158 (58%), Positives = 127/158 (80%), Gaps = 3/158 (1%)

Query: 1   MG-DHNFQHNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQ 59
           MG DH+   +HQA DGL+NL TK+N +L++VQY+LEKEFQQIYP++ANPMKLVSRIKK+Q
Sbjct: 1   MGIDHHLDQHHQAADGLMNLFTKANLDLSVVQYRLEKEFQQIYPESANPMKLVSRIKKIQ 60

Query: 60  EDLPILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQ 119
           +D+  LKEQCRE+L AKQD+ID+A  +L+ NRN++Q+MQ S+ IP  ++ +D +F+ FKQ
Sbjct: 61  DDISTLKEQCREVLIAKQDVIDQARTVLLGNRNMLQKMQASMGIPFVSDLDDPAFSEFKQ 120

Query: 120 VIDEWTVQVRSRTRDED--HDSNSEDINKLLFSAIVQG 155
           + +EWT QV+S+   ED   D++  D+NKLLFSA+VQ 
Sbjct: 121 ITEEWTTQVQSKFSGEDGQEDADCNDVNKLLFSAVVQA 158

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297825521|ref|XP_002880643.1| hypothetical protein ARALYDRAFT_481350 [Arabidopsis lyrata subsp. lyrata] gi|297326482|gb|EFH56902.1| hypothetical protein ARALYDRAFT_481350 [Arabidopsis lyrata subsp. lyrata]

 Score =  188 bits (477), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 90/149 (60%), Positives = 118/149 (79%), Gaps = 1/149 (0%)

Query: 8   HNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKE 67
           H+HQA+D L+N+  +++H+LT+V  KL+KEFQQ+YPDNANPMKL+ RIKK+QED+ +LK+
Sbjct: 5   HHHQAVDNLINVFARASHDLTVVHSKLDKEFQQLYPDNANPMKLIQRIKKLQEDVTLLKD 64

Query: 68  QCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQ 127
           QC ELL+AKQDLIDKA   LV N NL+Q+M VSL      E++DA  A+F Q+IDEWT+Q
Sbjct: 65  QCLELLSAKQDLIDKAQTTLVGNCNLIQKMNVSLGESTNGEADDA-LADFNQIIDEWTMQ 123

Query: 128 VRSRTRDEDHDSNSEDINKLLFSAIVQGN 156
           VRSR   E  +++ EDINK+LFSAIV  N
Sbjct: 124 VRSRAVGEIEEADKEDINKMLFSAIVHTN 152

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18400687|ref|NP_565581.1| uncharacterized protein [Arabidopsis thaliana] gi|4559355|gb|AAD23016.1| expressed protein [Arabidopsis thaliana] gi|21536662|gb|AAM60994.1| unknown [Arabidopsis thaliana] gi|88900396|gb|ABD57510.1| At2g24970 [Arabidopsis thaliana] gi|330252551|gb|AEC07645.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/149 (58%), Positives = 116/149 (77%), Gaps = 1/149 (0%)

Query: 8   HNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKE 67
           H+HQA+D L+N+ ++++H+LT+V  KL+KEFQQ+YP NANPMKL+ RIKK+QED+ +LK 
Sbjct: 5   HHHQAVDNLLNVFSRASHDLTVVHSKLDKEFQQMYPANANPMKLIQRIKKLQEDVTLLKH 64

Query: 68  QCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEWTVQ 127
           QC +LL+AKQDLIDKA   LV N NL+Q+M  SL      +++DA  A+F Q+IDEWT+Q
Sbjct: 65  QCLDLLSAKQDLIDKAQTTLVGNCNLIQKMNASLGESTNGDTDDA-LADFNQIIDEWTMQ 123

Query: 128 VRSRTRDEDHDSNSEDINKLLFSAIVQGN 156
           VRSRT  E  D++ EDINK+LFSAI   N
Sbjct: 124 VRSRTVGETEDADKEDINKMLFSAICHTN 152

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116779820|gb|ABK21440.1| unknown [Picea sitchensis]

 Score =  145 bits (365), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 72/153 (47%), Positives = 108/153 (70%), Gaps = 3/153 (1%)

Query: 5   NFQHNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPI 64
           N     +A+D L  L  K+N++LT VQ+KLE E +Q YP  ANP KL+ RIKK+QE+LP 
Sbjct: 3   NAVGGSRAVDNLEQLFVKANNDLTAVQHKLEIESEQRYPGKANPYKLMYRIKKIQEELPS 62

Query: 65  LKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDEW 124
           LK+QC +LLAAKQDLIDK  ++LV NR L+QRMQ   +IPV  +++D  + +F+++IDEW
Sbjct: 63  LKDQCEKLLAAKQDLIDKTQSMLVGNRGLLQRMQARANIPVICDTDDTVYISFEKIIDEW 122

Query: 125 TVQVRSRTRDEDHDSNS---EDINKLLFSAIVQ 154
             Q+  ++ +  +D+ S   +++N+ LFS+ +Q
Sbjct: 123 NQQLGLKSNEMGYDNGSVVLQNLNQTLFSSKIQ 155

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
TAIR|locus:2047359	152	AT2G24970 "AT2G24970" [Arabido	0.961	0.986	0.581	1.3e-43
UNIPROTKB|F1MUQ7	121	SKA2 "Spindle and kinetochore-	0.647	0.834	0.233	7e-06
UNIPROTKB|Q2TBY0	121	SKA2 "Spindle and kinetochore-	0.647	0.834	0.233	7e-06
UNIPROTKB|Q8WVK7	121	SKA2 "Spindle and kinetochore-	0.673	0.867	0.232	7e-06
UNIPROTKB|Q4R8E8	121	SKA2 "Spindle and kinetochore-	0.673	0.867	0.232	1.1e-05
UNIPROTKB|J9JHT3	121	LOC100856241 "Uncharacterized	0.647	0.834	0.233	1.5e-05
UNIPROTKB|J3KSP0	109	SKA2 "Spindle and kinetochore-	0.596	0.853	0.229	1.5e-05
UNIPROTKB|F1S259	110	LOC100520695 "Uncharacterized	0.589	0.836	0.234	8.1e-05
UNIPROTKB|B5X5N3	228	ska2 "Spindle and kinetochore-	0.743	0.508	0.258	0.00018

TAIR|locus:2047359 AT2G24970 "AT2G24970" [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 89/153 (58%), Positives = 118/153 (77%)

Query:     4 HNFQHNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLP 63
             HN  H+HQA+D L+N+ ++++H+LT+V  KL+KEFQQ+YP NANPMKL+ RIKK+QED+ 
Sbjct:     3 HN--HHHQAVDNLLNVFSRASHDLTVVHSKLDKEFQQMYPANANPMKLIQRIKKLQEDVT 60

Query:    64 ILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASFANFKQVIDE 123
             +LK QC +LL+AKQDLIDKA   LV N NL+Q+M  SL      +++DA  A+F Q+IDE
Sbjct:    61 LLKHQCLDLLSAKQDLIDKAQTTLVGNCNLIQKMNASLGESTNGDTDDA-LADFNQIIDE 119

Query:   124 WTVQVRSRTRDEDHDSNSEDINKLLFSAIVQGN 156
             WT+QVRSRT  E  D++ EDINK+LFSAI   N
Sbjct:   120 WTMQVRSRTVGETEDADKEDINKMLFSAICHTN 152

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006261 "DNA-dependent DNA replication" evidence=RCA

UNIPROTKB|F1MUQ7 SKA2 "Spindle and kinetochore-associated protein 2" [Bos taurus (taxid:9913)]

 Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 25/107 (23%), Positives = 53/107 (49%)

Query:    13 IDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNA---NPMKLVSRIKKVQEDLPILKEQC 69
             +D L  +  K++ +L  +QY+LE E +  YPD+A   NP+ L+  +  ++     L  + 
Sbjct:     5 VDKLELMFQKADSDLDYIQYRLEYEIKTNYPDSAGKKNPVTLLKELSAIKSRYQTLHVRF 64

Query:    70 RELLAAKQDLIDKASAILVRNRNLVQRMQVSLDI---PVANESEDAS 113
             + +   +++   +  A   +   L+Q +Q   D+   P+  E + A+
Sbjct:    65 KPIAVEQKETKSRICATFNKTMTLIQELQKETDLELLPLTEEEKTAA 111

GO:0051301 "cell division" evidence=IEA

GO:0031110 "regulation of microtubule polymerization or depolymerization" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0000940 "condensed chromosome outer kinetochore" evidence=IEA

GO:0000090 "mitotic anaphase" evidence=IEA

UNIPROTKB|Q2TBY0 SKA2 "Spindle and kinetochore-associated protein 2" [Bos taurus (taxid:9913)]

 Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 25/107 (23%), Positives = 53/107 (49%)

Query:    13 IDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNA---NPMKLVSRIKKVQEDLPILKEQC 69
             +D L  +  K++ +L  +QY+LE E +  YPD+A   NP+ L+  +  ++     L  + 
Sbjct:     5 VDKLELMFQKADSDLDYIQYRLEYEIKTNYPDSAGKKNPVTLLKELSAIKSRYQTLHVRF 64

Query:    70 RELLAAKQDLIDKASAILVRNRNLVQRMQVSLD---IPVANESEDAS 113
             + +   +++   +  A   +   L+Q +Q   D   +P+  E + A+
Sbjct:    65 KPIAVEQKETKSRICATFNKTMTLIQELQKETDMELLPLTEEEKTAA 111

GO:0008017 "microtubule binding" evidence=ISS

GO:0005876 "spindle microtubule" evidence=ISS

GO:0000940 "condensed chromosome outer kinetochore" evidence=ISS

GO:0051301 "cell division" evidence=ISS

GO:0000090 "mitotic anaphase" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0007067 "mitosis" evidence=ISS

GO:0031110 "regulation of microtubule polymerization or depolymerization" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q8WVK7 SKA2 "Spindle and kinetochore-associated protein 2" [Homo sapiens (taxid:9606)]

 Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 26/112 (23%), Positives = 57/112 (50%)

Query:    13 IDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNA---NPMKLVSRIKKVQEDLPILKEQC 69
             +D L  +  K+  +L  +QY+LE E +  +PD+A   NP+ L+  +  ++     L  + 
Sbjct:     5 VDKLELMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQTLYARF 64

Query:    70 RELLAAKQDLIDKASAILVRNRNLVQRMQVSLDI---PVANESEDASFANFK 118
             + +   +++   +  A + +  N++Q++Q   D+   P+  E + A+   FK
Sbjct:    65 KPVAVEQKESKSRICATVKKTMNMIQKLQKQTDLELSPLTKEEKTAA-EQFK 115

GO:0000940 "condensed chromosome outer kinetochore" evidence=IDA

GO:0051301 "cell division" evidence=IMP

GO:0031110 "regulation of microtubule polymerization or depolymerization" evidence=IDA

GO:0007067 "mitosis" evidence=IMP

GO:0007059 "chromosome segregation" evidence=IMP

GO:0000090 "mitotic anaphase" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0008017 "microtubule binding" evidence=IDA

GO:0005876 "spindle microtubule" evidence=IDA

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q4R8E8 SKA2 "Spindle and kinetochore-associated protein 2" [Macaca fascicularis (taxid:9541)]

 Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 26/112 (23%), Positives = 57/112 (50%)

Query:    13 IDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNA---NPMKLVSRIKKVQEDLPILKEQC 69
             +D L  +  K+  +L  +QY+LE E +  +PD+A   NP+ L+  +  ++     L  + 
Sbjct:     5 VDKLELMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSALKSRYQTLYARF 64

Query:    70 RELLAAKQDLIDKASAILVRNRNLVQRMQVSLDI---PVANESEDASFANFK 118
             + +   +++   +  A + +  N++Q++Q   D+   P+  E + A+   FK
Sbjct:    65 KPVAVEQKETKSRICATVNKTMNVIQKLQKQTDLELSPLTKEEKTAA-EQFK 115

GO:0000090 "mitotic anaphase" evidence=ISS

GO:0000940 "condensed chromosome outer kinetochore" evidence=ISS

GO:0005876 "spindle microtubule" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0007067 "mitosis" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0031110 "regulation of microtubule polymerization or depolymerization" evidence=ISS

GO:0051301 "cell division" evidence=ISS

UNIPROTKB|J9JHT3 LOC100856241 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 25/107 (23%), Positives = 55/107 (51%)

Query:    13 IDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNA---NPMKLVSRIKKVQEDLPILKEQC 69
             +D L  +  K++ +L  +QY+LE E +  +PD A   NP+ L+  +  V+     L  + 
Sbjct:     5 VDKLELMFQKADSDLDYIQYRLEYEIKTNHPDTASKKNPVTLLKELSAVKSRYQTLHARF 64

Query:    70 RELLAAKQDLIDKASAILVRNRNLVQRMQVSLDI---PVANESEDAS 113
             + + A +++  ++  A + +   ++Q +Q   D+   P+  E + A+
Sbjct:    65 KPIAAEQKETKNRICATVNKTMIMIQELQKQTDLELSPLTKEEKTAT 111

GO:0051301 "cell division" evidence=IEA

GO:0031110 "regulation of microtubule polymerization or depolymerization" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0000940 "condensed chromosome outer kinetochore" evidence=IEA

GO:0000090 "mitotic anaphase" evidence=IEA

UNIPROTKB|J3KSP0 SKA2 "Spindle and kinetochore-associated protein 2" [Homo sapiens (taxid:9606)]

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 22/96 (22%), Positives = 50/96 (52%)

Query:    13 IDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNA---NPMKLVSRIKKVQEDLPILKEQC 69
             +D L  +  K+  +L  +QY+LE E +  +PD+A   NP+ L+  +  ++     L  + 
Sbjct:     5 VDKLELMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQTLYARF 64

Query:    70 RELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPV 105
             + +   +++   +  A + +  N++Q++Q   D+ V
Sbjct:    65 KPVAVEQKESKSRICATVKKTMNMIQKLQKQTDLEV 100

GO:0000090 "mitotic anaphase" evidence=IEA

GO:0000940 "condensed chromosome outer kinetochore" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0031110 "regulation of microtubule polymerization or depolymerization" evidence=IEA

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|F1S259 LOC100520695 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 23/98 (23%), Positives = 50/98 (51%)

Query:    22 KSNHELTMVQYKLEKEFQQIYPDNA---NPMKLVSRIKKVQEDLPILKEQCRELLAAKQD 78
             K++ +L  +QY+LE E +  YPD+A   NP+ L+  +  ++     L  + + + A +++
Sbjct:     3 KADSDLDYIQYRLEYEIKTNYPDSAGKKNPVTLLKELSAIKSRYHGLHTRFKPIAAEQKE 62

Query:    79 LIDKASAILVRNRNLVQRMQVSLDI---PVANESEDAS 113
                +  A   +   L++ +Q   D+   P+  E + A+
Sbjct:    63 TKSRICATFNKTMTLIRELQKQTDLELLPLTEEEKTAA 100

GO:0051301 "cell division" evidence=IEA

GO:0031110 "regulation of microtubule polymerization or depolymerization" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0000940 "condensed chromosome outer kinetochore" evidence=IEA

GO:0000090 "mitotic anaphase" evidence=IEA

UNIPROTKB|B5X5N3 ska2 "Spindle and kinetochore-associated protein 2" [Salmo salar (taxid:8030)]

 Score = 105 (42.0 bits), Expect = 0.00018, P = 0.00018
 Identities = 32/124 (25%), Positives = 63/124 (50%)

Query:    12 AIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNA----NPMKLVSRIKKVQEDLPILKE 67
             A+D L  +  K+  ++  ++ +L  +F    P+N+    NPMKL+  +  ++     L  
Sbjct:     4 AVDKLEAMFQKAEADMEYMEKRLRLDFLTNVPENSAAEENPMKLLENLSAIKTRHAALCT 63

Query:    68 QCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDI--PVANESEDASFANFKQV-IDEW 124
             Q +E+ A ++  +D     L     LVQ++Q + D+  P   E+E  S A F  + +++ 
Sbjct:    64 QVQEIAAEQKQSMDAIRVHLDTTVQLVQQLQQTADVELPTVTETEQES-AEFLGLSVNQN 122

Query:   125 TVQV 128
             T++V
Sbjct:   123 TIEV 126


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.360    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      156       156   0.00073  106 3  11 22  0.37    32
                                                     30  0.42    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  568 (60 KB)
  Total size of DFA:  139 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.99u 0.10s 19.09t   Elapsed:  00:00:01
  Total cpu time:  18.99u 0.10s 19.09t   Elapsed:  00:00:01
  Start:  Mon May 20 22:55:13 2013   End:  Mon May 20 22:55:14 2013

GO:0000090 "mitotic anaphase" evidence=ISS

GO:0000940 "condensed chromosome outer kinetochore" evidence=ISS

GO:0005876 "spindle microtubule" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0007067 "mitosis" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0031110 "regulation of microtubule polymerization or depolymerization" evidence=ISS

GO:0051301 "cell division" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XVIII0513 hypothetical protein (155 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	156
cd12955	116	cd12955, SKA2, Spindle and kinetochore-associated	8e-05

>gnl|CDD|214020 cd12955, SKA2, Spindle and kinetochore-associated protein 2

 Score = 39.7 bits (93), Expect = 8e-05
 Identities = 26/101 (25%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 13  IDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNA---NPMKLVSRIKKVQEDLPILKEQC 69
           +D L  +  K+  +L  +Q +LE EF++  P++A   NP++L+ R+  ++     L  Q 
Sbjct: 1   VDKLEAMFQKAESDLDYIQRRLESEFKENSPESAGEKNPVELLERLSAIKSRYSTLCAQA 60

Query: 70  RELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVANESE 110
            E+  A+++ +    A L +   L+Q +Q + D  ++  +E
Sbjct: 61  EEIKKAQKESVSSIRAQLHKAMQLLQELQQTTDTELSPLTE 101

SKA2, also called FAM33A, is a component of the SKA complex, which is formed by the association of three subunits (SKA1, SKA2, annd SKA3). The SKA complex is essential for accurate cell division. It functions with the Ndc80 network to establish stable kinetochore-microtubule interactions, which are crucial for the highly orchestrated chromosome movements during mitosis. The biological unit is a W-shaped homodimer of the three-subunit complex. SKA2 has also been identified as a glucocorticoid receptor-interacting protein and may be involved in regulating cancer cell proliferation. Length = 116

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	156
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	89.38
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	88.58
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	80.81

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=89.38  E-value=6.7  Score=30.68  Aligned_cols=77  Identities=18%  Similarity=0.324  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhhHHHH-H
Q 031612           49 MKLVSRIKKVQEDLPILKEQCRELLAAKQ------------DLIDKASAILVRNRNLVQRMQVSLDIPVANESEDASF-A  115 (156)
Q Consensus        49 v~Ll~rL~~Iksr~~aL~~q~~~l~aeKq------------el~d~ir~~L~~t~~liQ~LQ~~tdleplteeE~~a~-~  115 (156)
                      ..|=.+|+.+++++..|...++.+.++-+            ..+..++..+...-..++.|+.  |-.+.|++|.... .
T Consensus        75 ~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~--~~~~vs~ee~~~~~~  152 (169)
T PF07106_consen   75 AELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS--GSKPVSPEEKEKLEK  152 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCCCHHHHHHHHH
Confidence            34445677778888888777777766643            3334444444444455555555  4456776665544 4


Q ss_pred             hHHHHHHHHHHh
Q 031612          116 NFKQVIDEWTVQ  127 (156)
Q Consensus       116 ~f~~~I~ewt~~  127 (156)
                      .|.....+|..+
T Consensus       153 ~~~~~~k~w~kR  164 (169)
T PF07106_consen  153 EYKKWRKEWKKR  164 (169)
T ss_pred             HHHHHHHHHHHH
Confidence            888888899865

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=88.58  E-value=8.8  Score=37.43  Aligned_cols=92  Identities=21%  Similarity=0.254  Sum_probs=50.7

Q ss_pred             hHHHHHHH-HHhhhhhHHHHHHH---HHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612           12 AIDGLVNL-LTKSNHELTMVQYK---LEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKASAIL   87 (156)
Q Consensus        12 aVd~Le~~-FqKAesDLdyIq~R---LE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L   87 (156)
                      |+..|..- +.+.+.--+-|++|   |..++.+.+-+   =-.+-++++.|++....|-++++++...|+.++.|+...|
T Consensus       544 a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~---L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl  620 (717)
T PF10168_consen  544 ATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKE---LQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVL  620 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444322 34444444445555   44444432211   1134445555566666667777777777777777766544


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhHHHHH
Q 031612           88 VRNRNLVQRMQVSLDIPVANESEDASFA  115 (156)
Q Consensus        88 ~~t~~liQ~LQ~~tdleplteeE~~a~~  115 (156)
                             +.++  ...|+||++|+.-+.
T Consensus       621 -------~~l~--~~~P~LS~AEr~~~~  639 (717)
T PF10168_consen  621 -------QLLN--SQLPVLSEAEREFKK  639 (717)
T ss_pred             -------HHHh--ccCCCCCHHHHHHHH
Confidence                   3353  347889999986654

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=80.81  E-value=8.8  Score=26.50  Aligned_cols=53  Identities=15%  Similarity=0.235  Sum_probs=33.5

Q ss_pred             HHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 031612           52 VSRIKKVQEDLPILKEQCR---ELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIP  104 (156)
Q Consensus        52 l~rL~~Iksr~~aL~~q~~---~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~tdle  104 (156)
                      =+||-.+..+++=+..-++   ++.++|+.-+|++...|..-..-|..+....+..
T Consensus         3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~~~~~   58 (69)
T PF04102_consen    3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELEDPSGSA   58 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence            4678888888776655554   5678899999999999988888888887554433

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	156
4aj5_K	123	Crystal Structure Of The Ska Core Complex Length =		7e-04

>pdb|4AJ5|K Chain K, Crystal Structure Of The Ska Core Complex Length = 123

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/112 (22%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 8   HNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNA---NPMKLVSRIKKVQEDLPI 64
           H    +D L  +  K+  +L  +QY+LE E +  +PD+A   NP+ L+  +  ++     
Sbjct: 2   HMEAEVDKLELMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQT 61
Query: 65  LKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDI---PVANESEDAS 113
           L  + + +   +++   +  A + +  N++Q++Q   D+   P+  E + A+
Sbjct: 62  LYARFKPVAVEQKESKSRICATVKKTMNMIQKLQKQTDLELSPLTKEEKTAA 113

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	156
4aj5_K	123	Spindle and kinetochore-associated protein 2; cell	4e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens} Length = 123

 Score = 74.6 bits (182), Expect = 4e-18
 Identities = 25/116 (21%), Positives = 57/116 (49%), Gaps = 5/116 (4%)

Query: 8   HNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNA---NPMKLVSRIKKVQEDLPI 64
           H    +D L  +  K+  +L  +QY+LE E +  +PD+A   NP+ L+  +  ++     
Sbjct: 2   HMEAEVDKLELMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQT 61

Query: 65  LKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSLDIPVA--NESEDASFANFK 118
           L  + + +   +++   +  A + +  N++Q++Q   D+ ++   + E  +   FK
Sbjct: 62  LYARFKPVAVEQKESKSRICATVKKTMNMIQKLQKQTDLELSPLTKEEKTAAEQFK 117

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 26/135 (19%)

Query: 5   NFQHNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQ--IYPDNAN-PMKLVSRI---KKV 58
           N++H     D L  ++  S + L   +Y+  K F +  ++P +A+ P  L+S I      
Sbjct: 346 NWKH--VNCDKLTTIIESSLNVLEPAEYR--KMFDRLSVFPPSAHIPTILLSLIWFDVIK 401

Query: 59  QEDLPILKEQCRELLAAKQ-------------DLIDKASAILVRNRNLVQRMQVSLDIPV 105
            + + ++ +  +  L  KQ             +L  K       +R++V    +      
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461

Query: 106 ANES---EDASFANF 117
            +      D  F + 
Sbjct: 462 DDLIPPYLDQYFYSH 476

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	156
4aj5_K	123	Spindle and kinetochore-associated protein 2; cell	100.0
3anw_B	171	GINS23, putative uncharacterized protein; SLD5 sup	86.51
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	84.42
1use_A	45	VAsp, vasodilator-stimulated phosphoprotein; signa	81.33

>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}

Probab=100.00  E-value=3.7e-49  Score=302.63  Aligned_cols=112  Identities=22%  Similarity=0.412  Sum_probs=101.4

Q ss_pred             chhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCC---ChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 031612            8 HNHQAIDGLVNLLTKSNHELTMVQYKLEKEFQQIYPDNA---NPMKLVSRIKKVQEDLPILKEQCRELLAAKQDLIDKAS   84 (156)
Q Consensus         8 ~~~~aVd~Le~~FqKAesDLdyIq~RLE~Ef~~~~pd~a---NPv~Ll~rL~~Iksr~~aL~~q~~~l~aeKqel~d~ir   84 (156)
                      +-++|||+|++||+||+|||+||||||||||+++|||||   |||+||+|||+||+||++||+||++|+++|||+||+||
T Consensus         2 ~me~avdkLe~mFqKA~sDLdyiq~RLe~Ef~~~~Pd~A~e~NPv~Ll~~LsaIk~ry~~L~~q~~~iaaeQke~~d~ir   81 (123)
T 4aj5_K            2 HMEAEVDKLELMFQKAESDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQTLYARFKPVAVEQKESKSRIC   81 (123)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhCCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457999999999999999999999999999999999999   99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcC--CCCCChhhHHHHHhHHH
Q 031612           85 AILVRNRNLVQRMQVSLD--IPVANESEDASFANFKQ  119 (156)
Q Consensus        85 ~~L~~t~~liQ~LQ~~td--leplteeE~~a~~~f~~  119 (156)
                      ++|++||+|||+||+++|  ++||||||++|-..|++
T Consensus        82 ~tL~~tm~miQ~LQ~~td~el~plteeE~~a~~~l~~  118 (123)
T 4aj5_K           82 ATVKKTMNMIQKLQKQTDLELSPLTKEEKTAAEQFKF  118 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHh
Confidence            999999999999999999  55999999999876654

>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}

Probab=86.51  E-value=6.5  Score=31.11  Aligned_cols=59  Identities=12%  Similarity=0.191  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C---CCCCChhhHHHHHhHHHHHHHHH
Q 031612           64 ILKEQCRELLAAKQDLIDKASAILVRNRNLVQRMQVSL-D---IPVANESEDASFANFKQVIDEWT  125 (156)
Q Consensus        64 aL~~q~~~l~aeKqel~d~ir~~L~~t~~liQ~LQ~~t-d---leplteeE~~a~~~f~~~I~ewt  125 (156)
                      .+...+.++-..++.+.+-.+.-+.+...++   .-.. +   +.-||+||+..|.++..+|++|.
T Consensus       106 ~~~~kl~elk~~~~~l~~L~~~Ri~KIv~la---~~~~~~~eil~rLTpEEk~iy~~l~~~i~~w~  168 (171)
T 3anw_B          106 TINVKLTKLANLRKKLRDLKLIRFNKILKAV---MLRPNSLELLSRLAPEERRIYLQMSKIRNEWL  168 (171)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHH---TC--CCHHHHTTSCHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCcHHHHhcCCHHHHHHHHHHHHHHHHHc
Confidence            3333445566666666666666665554444   1111 1   33699999999999999999995

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=84.42  E-value=1.3  Score=28.89  Aligned_cols=45  Identities=20%  Similarity=0.288  Sum_probs=22.1

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 031612           26 ELTMVQYKLEKEFQQIYPDNANPMKLVSRIKKVQEDLPILKEQCRELLA   74 (156)
Q Consensus        26 DLdyIq~RLE~Ef~~~~pd~aNPv~Ll~rL~~Iksr~~aL~~q~~~l~a   74 (156)
                      -|+||++-|--    .-|..+.=-+|..++..+|.++..|..+++++-+
T Consensus         3 AlefIk~~LG~----~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~   47 (53)
T 2yy0_A            3 ALDFLKHHLGA----ATPENPEIELLRLELAEMKEKYEAIVEENKKLKA   47 (53)
T ss_dssp             -----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCC----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777777621    2344445556777777777777777777777654

>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A

Probab=81.33  E-value=5  Score=25.78  Aligned_cols=33  Identities=24%  Similarity=0.478  Sum_probs=26.5

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031612           55 IKKVQEDLPILKEQCRELLAAKQDLIDKASAILVR   89 (156)
Q Consensus        55 L~~Iksr~~aL~~q~~~l~aeKqel~d~ir~~L~~   89 (156)
                      |.++|.+  .|++--++|...|+|++|.|++-|++
T Consensus         9 le~~KqE--IL~E~RkElqK~K~EIIeAi~~El~~   41 (45)
T 1use_A            9 LQRVKQE--LLEEVKKELQKVKEEIIEAFVQELRK   41 (45)
T ss_dssp             HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4455554  47788889999999999999998875

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00