Citrus Sinensis ID: 031626

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
MSQSNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDGILLFIML
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccEEEEEEEcccccccccHHHHHHHHcccccccccccccEEEEEEEEcccccEEEEEccccccccccccccccccccccccccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHccEEEEEEEccccccccHHHHHHHHHcccccccccccccEEEEEEEccccccEEEEEEccHHHccccccccccccccccccccHHHHHHHHHHc
Coil and Loop (DISEMBL)
msqsndssnpeekehDLESIFQQKRILRSQVRKTLksmdpslrshedNAIQKIVLeapwfkssqRLCAYISCsalrevdtSKLLSQILqipnadgdtktrkklyvprvedknshmrmFHISSIDDLIANsmnilepapvdadgnereDGILLFIML
Flexible Loop (DISEMBL)
msqsndssnpeekehdlesifqqkrilRSQVRKTLKsmdpslrshednAIQKIVLeapwfkssqRLCAYISCSALREVDTSKLLSQIlqipnadgdtktrkklyvprvedknshmrMFHISSIDDLIANSMNILEpapvdadgneREDGILLFIML
Low Complexity Region (SEG)
MSQSNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDGILLFIML
Disordered region (IsUnstruct)
************************************************AIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNA********KLYVPRV*****HMRMFHISSIDDLIANSMNIL**************GILLFI**
Disordered Region (DISOPRED)
**************************LRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDGILLFIML
Disordered Region (DISEMBL)
******************SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDGILLFIML
Disordered Region (DISPRO)
***************DLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNAD**TKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDGILLFIML
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQSNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDGILLFIML
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	156	2.2.26 [Sep-21-2011]
Q9XWE6	206	Probable 5-formyltetrahyd	yes	no	0.756	0.572	0.220	0.0005

>sp|Q9XWE6|MTHFS_CAEEL Probable 5-formyltetrahydrofolate cyclo-ligase OS=Caenorhabditis elegans GN=Y106G6E.4 PE=3 SV=1

 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 68/136 (50%), Gaps = 18/136 (13%)

Query: 27  LRSQVRKTLKSMDPSLRSHEDN----AIQKIVLEAPWFKSSQRLCAYISCSALREVDTSK 82
           ++S++R+ +K++   +   E      A+ + ++E+ WF+ S+RL  Y+S S   E+ T  
Sbjct: 7   VKSELRQFMKTLLGKISKEETQRQTEAVFEKIIESKWFQESKRLSVYVSTSG--EIQTDS 64

Query: 83  LLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHI---SSIDDLIANSMNILEPAPV 139
           ++ + L++          K++++P+    ++ M M  +   ++ D+L +    I +P P 
Sbjct: 65  IIQKALEM---------GKEVFIPQFTKGSTAMDMVRVPDQTAFDNLPSTLWGIRQPEPK 115

Query: 140 DADGNEREDGILLFIM 155
               +  E G L  I+
Sbjct: 116 WKWQSYHETGPLDLIL 131

Caenorhabditis elegans (taxid: 6239)
EC: 6EC: .EC: 3EC: .EC: 3EC: .EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
449477615	337	PREDICTED: 5-formyltetrahydrofolate cycl	0.903	0.418	0.758	4e-56
449441041	337	PREDICTED: 5-formyltetrahydrofolate cycl	0.903	0.418	0.758	5e-56
224121584	276	5-formyltetrahydrofolate cyclo-ligase [P	0.852	0.481	0.789	1e-55
147821092	522	hypothetical protein VITISV_027597 [Viti	0.846	0.252	0.765	5e-55
359491756	273	PREDICTED: 5-formyltetrahydrofolate cycl	0.846	0.483	0.765	1e-54
297734059	242	unnamed protein product [Vitis vinifera]	0.846	0.545	0.765	1e-54
356508620	260	PREDICTED: 5-formyltetrahydrofolate cycl	0.878	0.526	0.743	2e-53
351720903	254	uncharacterized protein LOC100527426 [Gl	0.884	0.543	0.727	3e-53
255540841	292	5-formyltetrahydrofolate cyclo-ligase, p	0.884	0.472	0.731	6e-53
217072924	241	unknown [Medicago truncatula]	0.820	0.531	0.751	3e-50

>gi|449477615|ref|XP_004155072.1| PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like [Cucumis sativus]

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 110/145 (75%), Positives = 122/145 (84%), Gaps = 4/145 (2%)

Query: 4   SNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSS 63
           +N+S  PE  E  L+ IF QKR+LRS VRK LK+MDPS RS EDN IQ IVLEAPWFKSS
Sbjct: 98  TNESIKPEN-EDQLKHIFDQKRVLRSSVRKALKAMDPSFRSQEDNVIQSIVLEAPWFKSS 156

Query: 64  QRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSI 123
           QRLCAY+SCSALREVDTS+LLS+ILQ P  DG +   KK+YVPRVEDKNSHMRMF+IS +
Sbjct: 157 QRLCAYVSCSALREVDTSRLLSEILQHPPKDGHS---KKIYVPRVEDKNSHMRMFNISRM 213

Query: 124 DDLIANSMNILEPAPVDADGNERED 148
           DDLIANSMNILEPAPVD DGNERED
Sbjct: 214 DDLIANSMNILEPAPVDGDGNERED 238

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441041|ref|XP_004138292.1| PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like [Cucumis sativus]

 Score =  222 bits (565), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 110/145 (75%), Positives = 122/145 (84%), Gaps = 4/145 (2%)

Query: 4   SNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSS 63
           +N+S  PE  E  L+ IF QKR+LRS VRK LK+MDPS RS EDN IQ IVLEAPWFKSS
Sbjct: 98  TNESIKPEN-EDQLKHIFDQKRVLRSSVRKALKAMDPSFRSQEDNVIQSIVLEAPWFKSS 156

Query: 64  QRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSI 123
           QRLCAY+SCSALREVDTS+LLS+ILQ P  DG +   KK+YVPRVEDKNSHMRMF+IS +
Sbjct: 157 QRLCAYVSCSALREVDTSRLLSEILQHPPKDGHS---KKIYVPRVEDKNSHMRMFNISRM 213

Query: 124 DDLIANSMNILEPAPVDADGNERED 148
           DDLIANSMNILEPAPVD DGNERED
Sbjct: 214 DDLIANSMNILEPAPVDGDGNERED 238

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121584|ref|XP_002318620.1| 5-formyltetrahydrofolate cyclo-ligase [Populus trichocarpa] gi|222859293|gb|EEE96840.1| 5-formyltetrahydrofolate cyclo-ligase [Populus trichocarpa]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 105/133 (78%), Positives = 119/133 (89%)

Query: 16  DLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSAL 75
           +L+ IF+QK++LRS+VRK+LKSMDPSLRS ED+AIQ +VLEAPWFKSSQRLCAYI+CSAL
Sbjct: 45  NLDGIFKQKQVLRSKVRKSLKSMDPSLRSQEDDAIQSLVLEAPWFKSSQRLCAYITCSAL 104

Query: 76  REVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILE 135
           REVDTSKLLSQILQ P  DG  +  KKLYVPRVEDKNSHMRM +ISS+DDLIANSM+ILE
Sbjct: 105 REVDTSKLLSQILQNPTKDGSVENAKKLYVPRVEDKNSHMRMLNISSMDDLIANSMDILE 164

Query: 136 PAPVDADGNERED 148
           PAPVD  GN RED
Sbjct: 165 PAPVDQHGNARED 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147821092|emb|CAN75382.1| hypothetical protein VITISV_027597 [Vitis vinifera]

 Score =  218 bits (556), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 101/132 (76%), Positives = 117/132 (88%)

Query: 17  LESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALR 76
           LE++F+QK+ILRS VRK LK MDPS RS EDNA+Q I+LEAPWF+SSQRLCAYISCS+LR
Sbjct: 58  LEAVFKQKKILRSSVRKALKGMDPSSRSQEDNAVQNIILEAPWFRSSQRLCAYISCSSLR 117

Query: 77  EVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEP 136
           EVDTSK+LS+ILQ P  DG T+  KKLYVPRVEDKNS+MRM +I+ +DDLI+NSMNILEP
Sbjct: 118 EVDTSKVLSEILQNPAKDGHTQMGKKLYVPRVEDKNSYMRMLNITHMDDLISNSMNILEP 177

Query: 137 APVDADGNERED 148
           APVD DGNERED
Sbjct: 178 APVDGDGNERED 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491756|ref|XP_002266146.2| PREDICTED: 5-formyltetrahydrofolate cyclo-ligase [Vitis vinifera]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 101/132 (76%), Positives = 117/132 (88%)

Query: 17  LESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALR 76
           LE++F+QK+ILRS VRK LK MDPS RS EDNA+Q I+LEAPWF+SSQRLCAYISCS+LR
Sbjct: 44  LEAVFKQKKILRSSVRKALKGMDPSSRSQEDNAVQNIILEAPWFRSSQRLCAYISCSSLR 103

Query: 77  EVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEP 136
           EVDTSK+LS+ILQ P  DG T+  KKLYVPRVEDKNS+MRM +I+ +DDLI+NSMNILEP
Sbjct: 104 EVDTSKVLSEILQNPAKDGHTQMGKKLYVPRVEDKNSYMRMLNITHMDDLISNSMNILEP 163

Query: 137 APVDADGNERED 148
           APVD DGNERED
Sbjct: 164 APVDGDGNERED 175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734059|emb|CBI15306.3| unnamed protein product [Vitis vinifera]

 Score =  217 bits (553), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 101/132 (76%), Positives = 117/132 (88%)

Query: 17  LESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALR 76
           LE++F+QK+ILRS VRK LK MDPS RS EDNA+Q I+LEAPWF+SSQRLCAYISCS+LR
Sbjct: 13  LEAVFKQKKILRSSVRKALKGMDPSSRSQEDNAVQNIILEAPWFRSSQRLCAYISCSSLR 72

Query: 77  EVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEP 136
           EVDTSK+LS+ILQ P  DG T+  KKLYVPRVEDKNS+MRM +I+ +DDLI+NSMNILEP
Sbjct: 73  EVDTSKVLSEILQNPAKDGHTQMGKKLYVPRVEDKNSYMRMLNITHMDDLISNSMNILEP 132

Query: 137 APVDADGNERED 148
           APVD DGNERED
Sbjct: 133 APVDGDGNERED 144

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508620|ref|XP_003523053.1| PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like [Glycine max]

 Score =  213 bits (541), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 107/144 (74%), Positives = 121/144 (84%), Gaps = 7/144 (4%)

Query: 7   SSNPEEKEHD-LESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQR 65
           S+N    +HD L++IF+ KR+LR+QVRKTLKS+ PSLRSH+DN +Q IVL APWFKSS+R
Sbjct: 23  STNTNTPKHDGLDAIFKHKRLLRTQVRKTLKSIQPSLRSHQDNTVQDIVLGAPWFKSSRR 82

Query: 66  LCAYISCSALREVDTSKLLSQILQIPNA-DGDTKTRKKLYVPRVEDKNSHMRMFHISSID 124
           LCAYISC+ALREVDT K+LSQILQ  NA DG     KKLYVPRVEDKNSHMRM HIS ID
Sbjct: 83  LCAYISCAALREVDTLKILSQILQHNNATDG-----KKLYVPRVEDKNSHMRMLHISGID 137

Query: 125 DLIANSMNILEPAPVDADGNERED 148
           DLIANSM+ILEPAPVD DGN RED
Sbjct: 138 DLIANSMDILEPAPVDVDGNARED 161

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720903|ref|NP_001235912.1| uncharacterized protein LOC100527426 [Glycine max] gi|255632316|gb|ACU16516.1| unknown [Glycine max]

 Score =  212 bits (540), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 104/143 (72%), Positives = 120/143 (83%), Gaps = 5/143 (3%)

Query: 7   SSNPEEKEHD-LESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQR 65
           S+N    +HD +++IF+QKR LR+QVRKTLKS+DPSL+SH+DN +Q IVL APWF+SS+R
Sbjct: 17  STNTNTPKHDDIDAIFKQKRFLRTQVRKTLKSIDPSLKSHQDNTVQDIVLGAPWFRSSRR 76

Query: 66  LCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD 125
           LCAYISC+ALREVDTSK+LSQILQ       T   KKLYVPRVEDKNSHMRM HIS IDD
Sbjct: 77  LCAYISCAALREVDTSKILSQILQ----HNSTTDGKKLYVPRVEDKNSHMRMLHISRIDD 132

Query: 126 LIANSMNILEPAPVDADGNERED 148
           LIANSM+ILEP PVDADGN RED
Sbjct: 133 LIANSMDILEPTPVDADGNARED 155

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540841|ref|XP_002511485.1| 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis] gi|223550600|gb|EEF52087.1| 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]

 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 101/138 (73%), Positives = 118/138 (85%)

Query: 11  EEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYI 70
           + +  + + IF+QKRILRS+VRK+LKSMDPSLRS EDNAIQ +VLEAPWFKSS+  CAYI
Sbjct: 41  QHQTANFDEIFKQKRILRSKVRKSLKSMDPSLRSEEDNAIQSLVLEAPWFKSSKTFCAYI 100

Query: 71  SCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANS 130
           SCSALREV+TS LL +IL+ P  DG  +T KKLYVPRVEDKNSHMRM +ISS+DDLIANS
Sbjct: 101 SCSALREVNTSVLLREILKNPEKDGCAQTPKKLYVPRVEDKNSHMRMLNISSMDDLIANS 160

Query: 131 MNILEPAPVDADGNERED 148
           MNILEPAP+D  GN+RED
Sbjct: 161 MNILEPAPIDGLGNKRED 178

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072924|gb|ACJ84822.1| unknown [Medicago truncatula]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 100/133 (75%), Positives = 115/133 (86%), Gaps = 5/133 (3%)

Query: 16  DLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSAL 75
           +L++IF+QK+ LR+QVRKTLK++DPSLRS +D AIQ I++ APWFKSS+ LCAYISCSAL
Sbjct: 15  ELDAIFKQKKALRTQVRKTLKAIDPSLRSQQDKAIQDIIVGAPWFKSSRGLCAYISCSAL 74

Query: 76  REVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILE 135
           REVDTSKLLS ILQ P A GD    KKLYVPRVEDKNSHMRM +IS IDDL+ANSMNILE
Sbjct: 75  REVDTSKLLSHILQPPPA-GD----KKLYVPRVEDKNSHMRMLNISRIDDLVANSMNILE 129

Query: 136 PAPVDADGNERED 148
           P PVDADGN R+D
Sbjct: 130 PTPVDADGNARQD 142

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
TAIR|locus:2179827	277	5-FCL "5-formyltetrahydrofolat	0.897	0.505	0.675	2.6e-47
UNIPROTKB|F1NWN8	201	MTHFS "Uncharacterized protein	0.724	0.562	0.246	2.8e-07
FB|FBgn0085453	201	CG34424 [Drosophila melanogast	0.775	0.601	0.274	1.5e-05
UNIPROTKB|P49914	203	MTHFS "5-formyltetrahydrofolat	0.743	0.571	0.235	0.00075

TAIR|locus:2179827 5-FCL "5-formyltetrahydrofolate cycloligase" [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 100/148 (67%), Positives = 121/148 (81%)

Query:     1 MSQSNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWF 60
             ++ S  S N EE    L+SIF+QKR++RS VRK+LK+MDPSLR+ +D AIQK VLEAPWF
Sbjct:    41 VAMSTTSKNQEE----LDSIFKQKRVVRSTVRKSLKAMDPSLRTQQDEAIQKTVLEAPWF 96

Query:    61 KSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHI 120
             KS + LCAYISC +L EVDTSK+LS+ILQ P    D+ T+KKLYVP VEDKNS+MRM HI
Sbjct:    97 KSCKGLCAYISCKSLNEVDTSKILSEILQHP----DSNTQKKLYVPWVEDKNSNMRMLHI 152

Query:   121 SSIDDLIANSMNILEPAPVDADGNERED 148
             S ++DL+ANSMNILEPAPVDA GN+RED
Sbjct:   153 SHMEDLVANSMNILEPAPVDAQGNDRED 180

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IEA;IGI;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0046653 "tetrahydrofolate metabolic process" evidence=IMP

UNIPROTKB|F1NWN8 MTHFS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 118 (46.6 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 32/130 (24%), Positives = 68/130 (52%)

Query:    24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
             KR LR+++R+ L+++  + +  +   + + V+    ++ S+R+  ++S     E+ T ++
Sbjct:    10 KRALRTELRQKLRALGAAEKQRQSRLLSRKVIGHSKYQESKRIAIFLSMPD--EIQTEEI 67

Query:    84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD---LIANSMNILEPAPVD 140
             +  I          K  K+ ++PR +  ++HM M  +SS +D   L   S NIL+P+   
Sbjct:    68 IKDIF---------KQGKECFIPRYKPHSNHMDMLKLSSAEDISSLTLTSWNILQPSD-- 116

Query:   141 ADGNEREDGI 150
              D + RE+ +
Sbjct:   117 -DDSAREEAL 125

GO:0005524 "ATP binding" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IEA

FB|FBgn0085453 CG34424 [Drosophila melanogaster (taxid:7227)]

 Score = 110 (43.8 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 37/135 (27%), Positives = 66/135 (48%)

Query:    24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
             K  LR +++  LK +D    + +  A+   VL++  F+ +QR+  Y+S ++  E+DT+ L
Sbjct:    10 KVALRKRMKDALKGIDAEAIARQSQAVTAKVLQSEIFRQAQRVSIYLSTAS--ELDTTAL 67

Query:    84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHM-RMFHISSIDDLIANSMNILEPAPVDA- 141
             LS++ ++          K ++VP  E     M R+  +   + L     NI +P   +A 
Sbjct:    68 LSEMFRL---------EKMVFVPTYEGSRMKMVRLRGMEEYESLPLTKWNIKQPDFKEAR 118

Query:   142 -DGNEREDGILLFIM 155
              D      GI LFI+
Sbjct:   119 EDAMTNGHGIDLFIV 133

GO:0005524 "ATP binding" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=ISS

UNIPROTKB|P49914 MTHFS "5-formyltetrahydrofolate cyclo-ligase" [Homo sapiens (taxid:9606)]

 Score = 100 (40.3 bits), Expect = 0.00075, P = 0.00075
 Identities = 32/136 (23%), Positives = 68/136 (50%)

Query:    19 SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREV 78
             ++   KR LR ++++ L++M    R  +   + + V+    ++ S+R+  ++S     E+
Sbjct:     5 AVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQD--EI 62

Query:    79 DTSKLLSQILQIPNADGDTKTRKKL-YVPRVEDKNSHMRMFHISSIDD---LIANSMNIL 134
             +T +++  I Q          R K+ ++PR   +++HM M  I S ++   L   S NI 
Sbjct:    63 ETEEIIKDIFQ----------RGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIP 112

Query:   135 EPAPVDADGNEREDGI 150
             +P     +G+ RE+ +
Sbjct:   113 QPG----EGDVREEAL 124


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.130   0.360    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      156       156   0.00073  106 3  11 22  0.38    32
                                                     30  0.42    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  573 (61 KB)
  Total size of DFA:  134 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.40u 0.15s 17.55t   Elapsed:  00:00:01
  Total cpu time:  17.40u 0.15s 17.55t   Elapsed:  00:00:01
  Start:  Thu May  9 16:44:03 2013   End:  Thu May  9 16:44:04 2013

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005542 "folic acid binding" evidence=IEA

GO:0015942 "formate metabolic process" evidence=NAS

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IDA;NAS

GO:0005829 "cytosol" evidence=NAS

GO:0046653 "tetrahydrofolate metabolic process" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	5FCL	5-formyltetrahydrofolate cyclo-ligase (237 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	GART	hypothetical protein (215 aa)						•	•		0.915
	gw1.V.378.1	hypothetical protein (318 aa)						•			0.800
	NIT2	nitrilase 2 (EC-3.5.5.1) (266 aa)							•		0.700

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	156
PLN02812	211	PLN02812, PLN02812, 5-formyltetrahydrofolate cyclo	8e-65
TIGR02727	179	TIGR02727, MTHFS_bact, 5,10-methenyltetrahydrofola	1e-14
COG0212	191	COG0212, COG0212, 5-formyltetrahydrofolate cyclo-l	2e-10
pfam01812	182	pfam01812, 5-FTHF_cyc-lig, 5-formyltetrahydrofolat	3e-09

>gnl|CDD|178408 PLN02812, PLN02812, 5-formyltetrahydrofolate cyclo-ligase

 Score =  196 bits (501), Expect = 8e-65
 Identities = 84/132 (63%), Positives = 103/132 (78%), Gaps = 9/132 (6%)

Query: 18  ESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALRE 77
           + I +QK+ LR +VR+ LK++ P  R+ ED AIQ  +LE PWFKSS+RLCAY+SC+ LRE
Sbjct: 1   DEIREQKKALRKEVRRALKALSPEQRAQEDAAIQSRLLELPWFKSSKRLCAYVSCAKLRE 60

Query: 78  VDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSI-DDLIANSMNILEP 136
           VDTSK+LS+ILQ P         K+LYVPRVEDKNS+MRM HI+ + DDL+ANSMNILEP
Sbjct: 61  VDTSKILSEILQNP--------DKRLYVPRVEDKNSNMRMLHITDMADDLVANSMNILEP 112

Query: 137 APVDADGNERED 148
            PVDADGN RED
Sbjct: 113 TPVDADGNPRED 124

Length = 211

>gnl|CDD|233985 TIGR02727, MTHFS_bact, 5,10-methenyltetrahydrofolate synthetase

 Score = 67.3 bits (165), Expect = 1e-14
 Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 14/121 (11%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALR-EVDTSK 82
           K+ LR ++ +  K++  + R    +AI K +L    +K+++ +  Y+    LR EVDT  
Sbjct: 1   KKELRKKLLEARKALSSAERKAASSAIAKRLLALIEWKNAKTIALYLP---LRGEVDTRP 57

Query: 83  LLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD-LIANSMNILEPAPVDA 141
           L+ Q+L+           K++ +P+V+     M  F I S +  L      ILEP     
Sbjct: 58  LIEQLLKEG---------KRVALPKVDGDGKEMLFFRIWSPEQPLTKGPFGILEPVGDLE 108

Query: 142 D 142
           +
Sbjct: 109 E 109

This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism [Central intermediary metabolism, One-carbon metabolism]. Length = 179

>gnl|CDD|223290 COG0212, COG0212, 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 11/115 (9%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K  LR  + +   ++ P  R   D  I K++      K ++ +  Y+  +   E+DT  L
Sbjct: 5   KSALRKLLLERRIALSPEERHEADQRIAKLLASLIEVKKAKTIALYVPFN--GEIDTRPL 62

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAP 138
           + Q L+     G     K+L +P++ D       +    +  LI N   ILEP  
Sbjct: 63  IRQALR----RG-----KRLLLPKLRDYKLLFLRYIPDPLQPLIKNRFGILEPGE 108

Length = 191

>gnl|CDD|216717 pfam01812, 5-FTHF_cyc-lig, 5-formyltetrahydrofolate cyclo-ligase family

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 21/132 (15%), Positives = 51/132 (38%), Gaps = 14/132 (10%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K+ LR Q+    +++    R+    A+ + +      + ++R+  Y+S     E+DT +L
Sbjct: 1   KQELRKQLLAKRRALSEEERAAASRALHQKLPSFVGAQKAKRVALYVSVK--GEIDTREL 58

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHIS-SIDDLIANSMNILEPAPVDAD 142
           +  +L+           K + +PR    +  +           L +    + E  P++ +
Sbjct: 59  IELLLEE---------GKLVLLPRPRPDSGLVVRITPYYPETGLPSGPYGLPE--PIEEE 107

Query: 143 GNEREDGILLFI 154
             E     +  +
Sbjct: 108 QRELALNQIDLV 119

5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase EC:6.3.3.2 catalyzes the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin. Length = 182

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	156
PLN02812	211	5-formyltetrahydrofolate cyclo-ligase	99.94
TIGR02727	181	MTHFS_bact 5,10-methenyltetrahydrofolate synthetas	99.92
PF01812	186	5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-lig	99.92
PRK10333	182	5-formyltetrahydrofolate cyclo-ligase family prote	99.92
KOG3093	200	consensus 5-formyltetrahydrofolate cyclo-ligase [C	99.9
COG0212	191	5-formyltetrahydrofolate cyclo-ligase [Coenzyme me	99.83

>PLN02812 5-formyltetrahydrofolate cyclo-ligase

Probab=99.94  E-value=6.4e-26  Score=180.83  Aligned_cols=127  Identities=62%  Similarity=1.025  Sum_probs=112.3

Q ss_pred             hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEeeCCCCC--CCChHHHHHHHHhCCCCCCC
Q 031626           19 SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALR--EVDTSKLLSQILQIPNADGD   96 (156)
Q Consensus        19 ~~~~~K~~lR~~~~~~R~~l~~~~~~~~s~~I~~~l~~~~~~~~a~~I~~Y~s~~~~~--Evdt~~li~~l~~~~~~~~~   96 (156)
                      .+...|++||++++++|++++++++...++.|++++..++.+.++++|++|+|++  +  ||||.+||+++++       
T Consensus         2 ~~~~~K~~lR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~~~Evdt~~li~~~~~-------   72 (211)
T PLN02812          2 EIREQKKALRKEVRRALKALSPEQRAQEDAAIQSRLLELPWFKSSKRLCAYVSCA--KLREVDTSKILSEILQ-------   72 (211)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcChhhHhcCEEEEEEECC--CCCCcCHHHHHHHHHH-------
Confidence            4567899999999999999999999999999999999999999999999999999  7  9999999999999       


Q ss_pred             CCCC-cEEEEeeEeCCCCceEEEEeCCC-CCCccCcCcccCCCCCCCCCC------CCCCceeEEEEC
Q 031626           97 TKTR-KKLYVPRVEDKNSHMRMFHISSI-DDLIANSMNILEPAPVDADGN------EREDGILLFIML  156 (156)
Q Consensus        97 ~~~g-k~V~lP~v~~~~~~m~f~~~~~~-~~L~~g~~GI~EP~~~~~~~~------~~~~~ldliiv~  156 (156)
                        .| |+|+||+|...+.+|.|+.|.+. ++|..|+|||+||........      .....+|+|||+
T Consensus        73 --~g~k~v~lP~~~~~~~~m~f~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~~~~~~~~iDliiVP  138 (211)
T PLN02812         73 --NPDKRLYVPRVEDKNSNMRMLHITDMADDLVANSMNILEPTPVDADGNPREDVLQAPEPLDLLLLP  138 (211)
T ss_pred             --cCCcEEEEeEEecCCCeEEEEEeCCccccccCCCCCccCCCccccccccccccccCCCCCCEEEeC
Confidence              99 99999999865567999999986 789999999999986532111      135689999996

>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase

Probab=99.92  E-value=2.3e-24  Score=167.80  Aligned_cols=121  Identities=26%  Similarity=0.358  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEE
Q 031626           24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKL  103 (156)
Q Consensus        24 K~~lR~~~~~~R~~l~~~~~~~~s~~I~~~l~~~~~~~~a~~I~~Y~s~~~~~Evdt~~li~~l~~~~~~~~~~~~gk~V  103 (156)
                      |+++|++++++|++++.+++.+.++.|++++..++.+.++++|++|+|++  +|+||.+|++++++         .||+|
T Consensus         1 K~~lR~~~~~~r~~l~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~Y~~~~--~E~~t~~li~~~~~---------~~k~v   69 (181)
T TIGR02727         1 KKELRKKLLERRKALSSEERKAASEAIAKRLLALIEWKNAKTIALYLPLR--GEVDTRPLIEQLLK---------EGKRV   69 (181)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH---------CCCEE
Confidence            67899999999999999999999999999999999999999999999999  99999999999999         99999


Q ss_pred             EEeeEeCCC-CceEEEEeCCCCCCccCcCcccCCCCCCCCCCCCCCceeEEEEC
Q 031626          104 YVPRVEDKN-SHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDGILLFIML  156 (156)
Q Consensus       104 ~lP~v~~~~-~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~~~~~~~~ldliiv~  156 (156)
                      |||++...+ ..|.|..|++.++|..|+|||+||..+... ....+.||+|||+
T Consensus        70 ~lP~~~~~~~~~~~~~~~~~~~~l~~~~~gi~eP~~~~~~-~~~~~~idlvivP  122 (181)
T TIGR02727        70 ALPKVDPDGKEMLFFRIWSPSDLLTKGKFGILEPPGDSTE-PVDPDEIDLIIVP  122 (181)
T ss_pred             EEEEEecCCCceeEEEecCCCCccccCCCCCCCCCCcccC-cCCcccCCEEEeC
Confidence            999997543 247788888777899999999999865321 2456789999986

This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism.

>PF01812 5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-ligase family; InterPro: IPR002698 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase 6

Probab=99.92  E-value=8.5e-25  Score=170.17  Aligned_cols=121  Identities=26%  Similarity=0.437  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEE
Q 031626           24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKL  103 (156)
Q Consensus        24 K~~lR~~~~~~R~~l~~~~~~~~s~~I~~~l~~~~~~~~a~~I~~Y~s~~~~~Evdt~~li~~l~~~~~~~~~~~~gk~V  103 (156)
                      |+++|++++++|++++++++...++.|++++.++..+.++++|++|+|++  +||||.+|++.+|+         .||+|
T Consensus         1 K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Ev~t~~li~~~~~---------~gk~v   69 (186)
T PF01812_consen    1 KKELRKEIRARRRALSPEERAEASQAICERLLALPEYRKAQTIALYLPMG--GEVDTRPLIERALK---------DGKRV   69 (186)
T ss_dssp             HHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHCCHHHHCTSEEEE----T--TS---HHHHHHHHH---------TTCEE
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhhhceEEEccCCC--CCCCHHHHHHHHHH---------cCCeE
Confidence            88999999999999999999999999999999999999999999999999  99999999999999         99999


Q ss_pred             EEeeEeCCC---CceEEEEeCCCCCCccCcCcccCCCCCCCCCCCCCCceeEEEEC
Q 031626          104 YVPRVEDKN---SHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDGILLFIML  156 (156)
Q Consensus       104 ~lP~v~~~~---~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~~~~~~~~ldliiv~  156 (156)
                      +||++....   ..|.|+.+.+.++|+.|+|||+||...... ....+.+|+|||+
T Consensus        70 ~lP~~~~~~~~~~~~~~~~~~~~~~l~~~~~gI~EP~~~~~~-~~~~~~idlvlVP  124 (186)
T PF01812_consen   70 YLPRVHPDDGRMRMMEFRRYDSDDPLEKGRFGIPEPDGESPP-PDPPEEIDLVLVP  124 (186)
T ss_dssp             EEEEEETTCTEECEEEEEEESSCGCCEECETTCEEEESTCSE-EGGGGG-SEEEEE
T ss_pred             ecceecccccccceeEEeecCCcccccccccCccCCcccccc-ccccccCCEEEeC
Confidence            999998654   357888999999999999999999886532 1222389999985

3.3.2 from EC catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+ []. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin [].; GO: 0005524 ATP binding, 0030272 5-formyltetrahydrofolate cyclo-ligase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 1WKC_A 1SBQ_A 1U3G_A 1U3F_B 1YDM_B 1SOU_A 2JCB_B 3HY6_A 3HY4_A 3HXT_A ....

>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional

Probab=99.92  E-value=5.5e-24  Score=166.22  Aligned_cols=114  Identities=17%  Similarity=0.302  Sum_probs=102.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEEEEeeEeC
Q 031626           31 VRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVED  110 (156)
Q Consensus        31 ~~~~R~~l~~~~~~~~s~~I~~~l~~~~~~~~a~~I~~Y~s~~~~~Evdt~~li~~l~~~~~~~~~~~~gk~V~lP~v~~  110 (156)
                      ++++|++++++++.++|++|++++.+++.+.++++|++|+|++  +||||.+||+.+|+         .||+|+||+|.+
T Consensus         2 ~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~---------~gk~v~lP~v~~   70 (182)
T PRK10333          2 IRQRRRALTPEQQQEMGQQAATRMMTYPPVVMAHTVAVFLSFD--GELDTQPLIEQLWR---------AGKRVYLPVLHP   70 (182)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH---------CCCEEEEeEEec
Confidence            5788999999999999999999999999999999999999999  99999999999999         999999999975


Q ss_pred             C-CCceEEEEeCCCCCCccCcCcccCCCCCCCCCCCCCCceeEEEEC
Q 031626          111 K-NSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDGILLFIML  156 (156)
Q Consensus       111 ~-~~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~~~~~~~~ldliiv~  156 (156)
                      . ++.|.|+.|.+.++|+.|+|||+||...... ....+.+|+|||+
T Consensus        71 ~~~~~m~f~~~~~~~~l~~~~~gI~EP~~~~~~-~~~~~~iDlviVP  116 (182)
T PRK10333         71 FSAGNLLFLNYHPQSELVMNRLKIHEPKLDVRD-VLPLSRLDVLITP  116 (182)
T ss_pred             CCCCEEEEEECCCCCccccCCCCCCCCCccccc-cCCcccCCEEEeC
Confidence            3 3579999999989999999999999865322 2446789999996

>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]

Probab=99.90  E-value=6.9e-23  Score=159.29  Aligned_cols=130  Identities=32%  Similarity=0.581  Sum_probs=114.9

Q ss_pred             chhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCC
Q 031626           17 LESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGD   96 (156)
Q Consensus        17 m~~~~~~K~~lR~~~~~~R~~l~~~~~~~~s~~I~~~l~~~~~~~~a~~I~~Y~s~~~~~Evdt~~li~~l~~~~~~~~~   96 (156)
                      |+.++..|+.||++++...++|+++.+..+|++|+++++++++|+++++|++|+||.+ +||+|..||+.+++       
T Consensus         1 ~~~i~~~K~~LR~~lk~~L~ald~e~i~rQs~ai~~kV~e~~~fk~skrvs~YmSm~~-~Ev~T~~Ii~~~fq-------   72 (200)
T KOG3093|consen    1 ADAISATKRLLRRQLKRSLGALDAEIIARQSEAISKKVLELPWFKNSKRVSIYMSMDK-GEVDTGEIIKEAFQ-------   72 (200)
T ss_pred             CchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhhHHHHhcCceEEEEecCc-ccccHHHHHHHHHh-------
Confidence            4567899999999999999999999999999999999999999999999999999994 49999999999999       


Q ss_pred             CCCCcEEEEeeEeCCCCceEEEEeCCCCC---CccCcCcccCCCCCCCCCCCCCC--ceeEEEEC
Q 031626           97 TKTRKKLYVPRVEDKNSHMRMFHISSIDD---LIANSMNILEPAPVDADGNERED--GILLFIML  156 (156)
Q Consensus        97 ~~~gk~V~lP~v~~~~~~m~f~~~~~~~~---L~~g~~GI~EP~~~~~~~~~~~~--~ldliiv~  156 (156)
                        .||.||+|++......|.+++++...+   |..+.|||++|.+....+...+.  .||||||+
T Consensus        73 --~gK~vFiP~~~~~~s~m~Mvr~~~~e~~~~l~~t~w~i~qp~~~~~re~~~~t~~~lDLiivP  135 (200)
T KOG3093|consen   73 --DGKEVFIPRCTHTSSKMDMVRIDHMEELESLPMTSWGIRQPKPGGPREDALETGHPLDLIIVP  135 (200)
T ss_pred             --cCCeEEeeeeecCCCceeEEEeCChHHHhhCcccccCCCCCCCCCchhhhccCCCcceEEEec
Confidence              999999999987789999999987654   45789999999875544333333  59999996

>COG0212 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]

Probab=99.83  E-value=1.2e-19  Score=142.89  Aligned_cols=121  Identities=24%  Similarity=0.360  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCC
Q 031626           21 FQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTR  100 (156)
Q Consensus        21 ~~~K~~lR~~~~~~R~~l~~~~~~~~s~~I~~~l~~~~~~~~a~~I~~Y~s~~~~~Evdt~~li~~l~~~~~~~~~~~~g  100 (156)
                      ++.|+++|++++++|.++++..+.+.+..+++++..++.+..+++|++|+|++  +|+||.++++.+|+         .|
T Consensus         2 ~~~K~~lR~~~~~~r~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ia~y~~~~--~E~~~~~l~~~~l~---------~g   70 (191)
T COG0212           2 MATKSALRKLLLERRIALSPEERHEADQRIAKLLASLIEVKKAKTIALYVPFN--GEIDTRPLIRQALR---------RG   70 (191)
T ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccccccEEEEEeccC--CCCCcHHHHHHHHH---------cC
Confidence            46799999999999999999999999999999999999999999999999999  99999999999999         99


Q ss_pred             cEEEEeeEeCCCCceEEEEeCCC--CCCccCcCcccCCCCCCCCCCCCCCceeEEEEC
Q 031626          101 KKLYVPRVEDKNSHMRMFHISSI--DDLIANSMNILEPAPVDADGNEREDGILLFIML  156 (156)
Q Consensus       101 k~V~lP~v~~~~~~m~f~~~~~~--~~L~~g~~GI~EP~~~~~~~~~~~~~ldliiv~  156 (156)
                      |+|++|++.+  ..+.|..|.+.  ..+..+.|||.||....... . ++.+|+|||+
T Consensus        71 k~l~lP~~~~--~~~~f~~~~~~~~~~~~~~~~gi~eP~~~~~~~-~-~~~iDlvlvP  124 (191)
T COG0212          71 KRLLLPKLRD--YKLLFLRYIPDPLQPLIKNRFGILEPGEYGRKI-P-PPEIDLVLVP  124 (191)
T ss_pred             CEEEEeEEEc--CcceeEEecCCCCcccccccccccCCCccCCcc-C-CCcCCEEEeC
Confidence            9999999984  67889999888  88999999999999876432 2 3789999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	156
3hxt_A	203	Structure Of Human Mthfs Length = 203		5e-04

>pdb|3HXT|A Chain A, Structure Of Human Mthfs Length = 203

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 65/131 (49%), Gaps = 20/131 (15%)
Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           KR LR ++++ L++M    R  +   + + V+    ++ S+R+  ++S     E++T ++
Sbjct: 10  KRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQD--EIETEEI 67
Query: 84  LSQILQIPNADGDTKTRKKL-YVPRVEDKNSHMRMFHISS---IDDLIANSMNILEPAPV 139
           +  I Q          R K+ ++PR   +++HM M  I S   I  L   S NI +P   
Sbjct: 68  IKDIFQ----------RGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQP--- 114
Query: 140 DADGNEREDGI 150
             +G+ RE+ +
Sbjct: 115 -GEGDVREEAL 124

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	156
2jcb_A	200	5-formyltetrahydrofolate cyclo-ligase family PROT;	1e-26
3hy3_A	203	5-formyltetrahydrofolate cyclo-ligase; antifolate,	4e-26
1ydm_A	187	Hypothetical protein YQGN; northeast structural ge	1e-25
1sou_A	194	5,10-methenyltetrahydrofolate synthetase; structur	4e-21
1wkc_A	184	HB8 TT1367 protein; structural genomics, riken str	9e-15
1sbq_A	189	H91_ORF164, 5,10-methenyltetrahydrofolate syntheta	8e-11

>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate metabolism; HET: ADP; 1.6A {Bacillus anthracis} Length = 200

 Score = 98.1 bits (245), Expect = 1e-26
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 11/124 (8%)

Query: 15  HDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSA 74
           H    + ++K  LR Q+ + + S+     +     I   + E   +  ++ +   +S   
Sbjct: 4   HHHHHVREEKLRLRKQIIEHMNSLSKERYTTLSEQIVFSLYEQKEWAEAKTIGITLSME- 62

Query: 75  LREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNIL 134
             EV+T  ++ +           K  K++ VP+   +   M    IS+ D L    MN+ 
Sbjct: 63  -NEVNTYPIIEKAW---------KEGKRVVVPKCNKETRTMSFRQISNFDQLETVYMNLR 112

Query: 135 EPAP 138
           EP P
Sbjct: 113 EPIP 116

>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, ATP-binding, binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A Length = 203

 Score = 96.9 bits (242), Expect = 4e-26
 Identities = 33/142 (23%), Positives = 65/142 (45%), Gaps = 15/142 (10%)

Query: 18  ESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALRE 77
            ++   KR LR ++++ L++M    R  +   + + V+    ++ S+R+  ++S     E
Sbjct: 4   AAVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQ--DE 61

Query: 78  VDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD---LIANSMNIL 134
           ++T +++  I Q     G     K  ++PR   +++HM M  I S ++   L   S NI 
Sbjct: 62  IETEEIIKDIFQ----RG-----KICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIP 112

Query: 135 EPAPVDADGNERE-DGILLFIM 155
           +P   D         G+ L  M
Sbjct: 113 QPGEGDVREEALSTGGLDLIFM 134

>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis} Length = 187

 Score = 95.3 bits (238), Expect = 1e-25
 Identities = 20/115 (17%), Positives = 44/115 (38%), Gaps = 11/115 (9%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K  LR +  + L ++       +   + K +   P ++++  +   IS     E+ T  +
Sbjct: 2   KSQLRKKTLEALSALSNEDILQKTERMYKYLFSLPEWQNAGTIAVTISRG--LEIPTRPV 59

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAP 138
           + Q  +    +G     K++ +P+       M+     + D L      +LEP  
Sbjct: 60  IEQAWE----EG-----KQVCIPKCHPDTKKMQFRTYQTDDQLETVYAGLLEPVI 105

>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6 Length = 194

 Score = 83.8 bits (208), Expect = 4e-21
 Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 14/115 (12%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K  LR +V     ++    R      +   +   P FK S+++  Y       EVD + L
Sbjct: 3   KSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALYCPIK--GEVDLTPL 60

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAP 138
             ++L+           K+L +P+VE     + ++ + S   L   +  I+EP  
Sbjct: 61  FPEVLK----------EKELILPKVEGN--EISLYRVHSPACLGVGAFGIMEPVE 103

>1wkc_A HB8 TT1367 protein; structural genomics, riken structural genomics/proteomi initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.124.1.6 Length = 184

 Score = 66.9 bits (164), Expect = 9e-15
 Identities = 20/115 (17%), Positives = 35/115 (30%), Gaps = 22/115 (19%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K  LR + R   + +D    S    A+   +L     +  + +  Y       E++   L
Sbjct: 3   KAELRRRARAAWRRLDLKALSR---AVGAALLPWLRERGFRHILLYHPLP--HELNLLPL 57

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAP 138
           +                 + Y+P+V  K       H      L      +LEP  
Sbjct: 58  MEAY------------PARYYLPKVAGKG---LTVH--PFGPLAPGPFGLLEPTT 95

>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog; MTHFS, 5- formyltetrahydrofolate cyclo-ligase, structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP: c.124.1.6 PDB: 1u3f_A* 1u3g_A* Length = 189

 Score = 56.5 bits (137), Expect = 8e-11
 Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 21/123 (17%)

Query: 19  SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAP-WFKSSQRLCAYISCSALRE 77
                K  LR Q+ +   ++    +SH D  I + ++         + +  Y       E
Sbjct: 23  QGHMDKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIK--NE 80

Query: 78  VDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPA 137
           V       + L+          + +   P+V   ++ +           I    N  EP 
Sbjct: 81  VTFVDFFFEFLK--------INQIRAVYPKVI-SDTEI---------IFIDQETNTFEPN 122

Query: 138 PVD 140
            +D
Sbjct: 123 QID 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	156
3hy3_A	203	5-formyltetrahydrofolate cyclo-ligase; antifolate,	99.96
2jcb_A	200	5-formyltetrahydrofolate cyclo-ligase family PROT;	99.94
1ydm_A	187	Hypothetical protein YQGN; northeast structural ge	99.93
1sou_A	194	5,10-methenyltetrahydrofolate synthetase; structur	99.92
1wkc_A	184	HB8 TT1367 protein; structural genomics, riken str	99.87
1sbq_A	189	H91_ORF164, 5,10-methenyltetrahydrofolate syntheta	99.82

>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, ATP-binding, binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A

Probab=99.96  E-value=1.8e-28  Score=193.03  Aligned_cols=130  Identities=25%  Similarity=0.411  Sum_probs=115.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCC
Q 031626           16 DLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADG   95 (156)
Q Consensus        16 ~m~~~~~~K~~lR~~~~~~R~~l~~~~~~~~s~~I~~~l~~~~~~~~a~~I~~Y~s~~~~~Evdt~~li~~l~~~~~~~~   95 (156)
                      +|+++...|++||++++++|++++++++..+++.|+++|++++.|+++++|++|+|++  +||||.+||+++|.      
T Consensus         2 ~~~~~~~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~------   73 (203)
T 3hy3_A            2 AAAAVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQ--DEIETEEIIKDIFQ------   73 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTCHHHHHCSEEECCCCCT--TSCCCHHHHHHHHH------
T ss_pred             chhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCHhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH------
Confidence            5788999999999999999999999999999999999999999999999999999999  99999999999999      


Q ss_pred             CCCCCcEEEEeeEeCCCCceEEEEeCCCC---CCccCcCcccCCCCCCCC-CCCCCCceeEEEEC
Q 031626           96 DTKTRKKLYVPRVEDKNSHMRMFHISSID---DLIANSMNILEPAPVDAD-GNEREDGILLFIML  156 (156)
Q Consensus        96 ~~~~gk~V~lP~v~~~~~~m~f~~~~~~~---~L~~g~~GI~EP~~~~~~-~~~~~~~ldliiv~  156 (156)
                         .||+|+||++...++.|.|+.|.+.+   .|.+|+|||+||...... .....+.+|+|||+
T Consensus        74 ---~gk~v~lP~~~~~~~~m~~~~~~~~~~~~~L~~g~~GI~EP~~~~~~~~~~~~~~~DlvlVP  135 (203)
T 3hy3_A           74 ---RGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQPGEGDVREEALSTGGLDLIFMP  135 (203)
T ss_dssp             ---TTCEEEEEEEETTTTEEEEEEECCHHHHTTSCBCTTSCBCCCTTCCCCBGGGTTCCSEEEEC
T ss_pred             ---CCCEEEEEEEecCCCeEEEEEeCChhhhhhccCCCCCCCCCCCccccccccCccCCCEEEeC
Confidence               99999999998656689999998753   578999999999865321 11234579999996

>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate metabolism; HET: ADP; 1.6A {Bacillus anthracis}

Probab=99.94  E-value=3.6e-27  Score=185.62  Aligned_cols=126  Identities=22%  Similarity=0.300  Sum_probs=113.2

Q ss_pred             hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCC
Q 031626           19 SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTK   98 (156)
Q Consensus        19 ~~~~~K~~lR~~~~~~R~~l~~~~~~~~s~~I~~~l~~~~~~~~a~~I~~Y~s~~~~~Evdt~~li~~l~~~~~~~~~~~   98 (156)
                      -....|++||++++++|++++++++..+++.|+++|.+++.|.++++|++|+|++  +|+||.+|++++|+         
T Consensus         8 ~~~~~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~---------   76 (200)
T 2jcb_A            8 HVREEKLRLRKQIIEHMNSLSKERYTTLSEQIVFSLYEQKEWAEAKTIGITLSME--NEVNTYPIIEKAWK---------   76 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTSHHHHHCSEEECCCCCT--TSCCCHHHHHHHHH---------
T ss_pred             hhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEECCCC--CCCCHHHHHHHHHH---------
Confidence            4578899999999999999999999999999999999999999999999999999  99999999999999         


Q ss_pred             CCcEEEEeeEeCCCCceEEEEeCCCCCCccCcCcccCCCCCCCCCCCCCCceeEEEEC
Q 031626           99 TRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDGILLFIML  156 (156)
Q Consensus        99 ~gk~V~lP~v~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~~~~~~~~ldliiv~  156 (156)
                      .||+|+||++...++.|.|+.|++.++|++|+|||+||...... ......+|+|||+
T Consensus        77 ~gk~v~lP~~~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~-~~~~~~iDlvlVP  133 (200)
T 2jcb_A           77 EGKRVVVPKCNKETRTMSFRQISNFDQLETVYMNLREPIPALTE-EVNADEIDLQIVP  133 (200)
T ss_dssp             TTCEEEEEEEETTTTEEEEEEESSGGGEEEEETTEEEECGGGCE-ECCGGGCSEEECC
T ss_pred             CCCEEEEeEEEcCCCcEEEEEeCCCcccccCCCCCCCCCCcccc-cCCccCCCEEEEC
Confidence            99999999997556789999999988999999999999853211 2345689999986

>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis}

Probab=99.93  E-value=8.8e-27  Score=181.29  Aligned_cols=122  Identities=18%  Similarity=0.255  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCcE
Q 031626           23 QKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKK  102 (156)
Q Consensus        23 ~K~~lR~~~~~~R~~l~~~~~~~~s~~I~~~l~~~~~~~~a~~I~~Y~s~~~~~Evdt~~li~~l~~~~~~~~~~~~gk~  102 (156)
                      .|++||++++++|++++++++..+++.|+++|.+++.+.++++|++|+|++  +|+||.+|++++|+         .||+
T Consensus         1 ~K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Evdt~~li~~~~~---------~gk~   69 (187)
T 1ydm_A            1 MKSQLRKKTLEALSALSNEDILQKTERMYKYLFSLPEWQNAGTIAVTISRG--LEIPTRPVIEQAWE---------EGKQ   69 (187)
T ss_dssp             ---CHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTSHHHHTCSEEECCCCCT--TSCCCHHHHHHHHH---------TTCE
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCHHhhhCCEEEEECCCC--CCCCHHHHHHHHHH---------CCCE
Confidence            388999999999999999999999999999999999999999999999999  99999999999999         9999


Q ss_pred             EEEeeEeCCCCceEEEEeCCCCCCccCcCcccCCCCCCCCCCCCCCceeEEEEC
Q 031626          103 LYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDGILLFIML  156 (156)
Q Consensus       103 V~lP~v~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~~~~~~~~ldliiv~  156 (156)
                      |+||++...++.|.|+.|++.++|++|+|||+||...... ....+.+|+|||+
T Consensus        70 v~lP~~~~~~~~m~f~~~~~~~~L~~~~~gi~EP~~~~~~-~~~~~~iDlvivP  122 (187)
T 1ydm_A           70 VCIPKCHPDTKKMQFRTYQTDDQLETVYAGLLEPVIEKTK-EVNPSQIDLMIVP  122 (187)
T ss_dssp             EEEECC---CCCCCEEECCCCTTHHHHHTTSCCCC--CCC-CCCGGGCCEEECC
T ss_pred             EEEeEEecCCCcEEEEEeCCCCccCcCCCCCCCCCCcccc-cCCccCCCEEEeC
Confidence            9999996446789999999988999999999999864311 2345689999986

>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6

Probab=99.92  E-value=1.4e-25  Score=175.65  Aligned_cols=117  Identities=21%  Similarity=0.353  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCcE
Q 031626           23 QKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKK  102 (156)
Q Consensus        23 ~K~~lR~~~~~~R~~l~~~~~~~~s~~I~~~l~~~~~~~~a~~I~~Y~s~~~~~Evdt~~li~~l~~~~~~~~~~~~gk~  102 (156)
                      .|++||++++++|++++++++..+++.|+++|.+++.+.++++|++|+|++  +||||.+|++.+|+         . |+
T Consensus         2 ~K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Evdt~~li~~~~~---------~-k~   69 (194)
T 1sou_A            2 LKSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALYCPIK--GEVDLTPLFPEVLK---------E-KE   69 (194)
T ss_dssp             CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCHHHHHCCEEEECCCCS--SCCCCGGGHHHHHH---------H-SE
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEECCCC--CCCCHHHHHHHHHH---------c-CC
Confidence            389999999999999999999999999999999999999999999999999  99999999999999         9 99


Q ss_pred             EEEeeEeCCCCceEEEEeCCCCCCccCcCcccCCCCCCCCCCCCCCceeEEEEC
Q 031626          103 LYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDGILLFIML  156 (156)
Q Consensus       103 V~lP~v~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~~~~~~~~ldliiv~  156 (156)
                      |+||++  .++.|.|+.|++.++|++|+|||+||.. . . ......+|+|||+
T Consensus        70 v~lP~~--~~~~m~f~~~~~~~~L~~g~~GI~EP~~-~-~-~~~~~~iDlvlvP  118 (194)
T 1sou_A           70 LILPKV--EGNEISLYRVHSPACLGVGAFGIMEPVE-G-E-RVNPEDVDFIAVP  118 (194)
T ss_dssp             EEEEEE--SSSSEEEEEESSSCCCEECSSSCEECCS-S-E-EECGGGCSEEEEC
T ss_pred             EEEEEe--cCCeeEEEEECCCCccCCCCCCCCCCCc-c-c-cCCCCCCCEEEEC
Confidence            999999  3568999999999999999999999975 1 1 1234689999986

>1wkc_A HB8 TT1367 protein; structural genomics, riken structural genomics/proteomi initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.124.1.6

Probab=99.87  E-value=1.4e-22  Score=157.44  Aligned_cols=108  Identities=18%  Similarity=0.273  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCcE
Q 031626           23 QKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKK  102 (156)
Q Consensus        23 ~K~~lR~~~~~~R~~l~~~~~~~~s~~I~~~l~~~~~~~~a~~I~~Y~s~~~~~Evdt~~li~~l~~~~~~~~~~~~gk~  102 (156)
                      .|++||++++++|+++++++   +++.|+++|.+++.+.++++|++|+|++  +||||.+|++  |+         . |+
T Consensus         2 ~K~~lR~~~~~~r~~l~~~~---~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Evdt~~li~--~~---------~-k~   64 (184)
T 1wkc_A            2 TKAELRRRARAAWRRLDLKA---LSRAVGAALLPWLRERGFRHILLYHPLP--HELNLLPLME--AY---------P-AR   64 (184)
T ss_dssp             CHHHHHHHHHHHHHTSCHHH---HHHHHHHHHHHHHHHHTCCEEECCCCCT--TCCCCTTHHH--HS---------C-CE
T ss_pred             CHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhChhhhcCCEEEEECCCC--CCcCHHHHHH--hh---------c-CC
Confidence            38999999999999999987   7899999999999999999999999999  9999999999  78         8 99


Q ss_pred             EEEeeEeCCCCceEEEEeCCCCCCccCcCcccCCCCCCCCCCCCCCceeEEEEC
Q 031626          103 LYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDGILLFIML  156 (156)
Q Consensus       103 V~lP~v~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~~~~~~~~ldliiv~  156 (156)
                      |+||++.. + .|.|+.|+   +|++|+|||+|| ...   ......+|+|||+
T Consensus        65 v~lP~~~~-~-~m~f~~~~---~L~~~~~gi~EP-~~~---~~~~~~iDlvlvP  109 (184)
T 1wkc_A           65 YYLPKVAG-K-GLTVHPFG---PLAPGPFGLLEP-TTP---PEDPRVLDLVVVP  109 (184)
T ss_dssp             EEEEEEET-T-EEEEEESC---CBC-------CB-CSC---CBCGGGCSEEEEC
T ss_pred             EEEeEEeC-C-ceEEEEec---ccCCCCCCCCCC-CCc---cCCCCCCCEEEEC
Confidence            99999863 4 89999998   899999999999 321   1234689999986

>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog; MTHFS, 5- formyltetrahydrofolate cyclo-ligase, structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP: c.124.1.6 PDB: 1u3f_A* 1u3g_A*

Probab=99.82  E-value=9.9e-21  Score=147.83  Aligned_cols=90  Identities=17%  Similarity=0.229  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCcc-CCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCC
Q 031626           22 QQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFK-SSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTR  100 (156)
Q Consensus        22 ~~K~~lR~~~~~~R~~l~~~~~~~~s~~I~~~l~~~~~~~-~a~~I~~Y~s~~~~~Evdt~~li~~l~~~~~~~~~~~~g  100 (156)
                      |.|++||++++++|++++++++..+++.|+++|++++.+. ++++|++|+|++  +||||.+|++++|+         .|
T Consensus        26 m~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~---------~g   94 (189)
T 1sbq_A           26 MDKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIK--NEVTFVDFFFEFLK---------IN   94 (189)
T ss_dssp             CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTCTTCCEEECCCCCT--TSCCCCHHHHHHHH---------HT
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHhHhhCCEEEEECCCC--CCCCHHHHHHHHHH---------cC
Confidence            4699999999999999999999999999999999999999 999999999999  99999999999999         99


Q ss_pred             c-EEEEeeEeCCCCceEEEEeCCC
Q 031626          101 K-KLYVPRVEDKNSHMRMFHISSI  123 (156)
Q Consensus       101 k-~V~lP~v~~~~~~m~f~~~~~~  123 (156)
                      | +|+||++.. ++.|.|+.|++.
T Consensus        95 k~~v~lP~~~~-~~~m~f~~~~~~  117 (189)
T 1sbq_A           95 QIRAVYPKVIS-DTEIIFIDQETN  117 (189)
T ss_dssp             TCEEEEEEECS-SSCEEEECTTCC
T ss_pred             CCeEEEeEEcc-CCceEEEEeCCC
Confidence            9 999999963 467999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	156
d1wkca_	175	c.124.1.6 (A:) Hypothetical protein TTHA1611 {Ther	0.001

>d1wkca_ c.124.1.6 (A:) Hypothetical protein TTHA1611 {Thermus thermophilus [TaxId: 274]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: Hypothetical protein TTHA1611
species: Thermus thermophilus [TaxId: 274]

 Score = 35.2 bits (80), Expect = 0.001
 Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 3/48 (6%)

Query: 24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYIS 71
          K  LR + R   + +D    S    A+   +L     +  + +  Y  
Sbjct: 3  KAELRRRARAAWRRLDLKALSR---AVGAALLPWLRERGFRHILLYHP 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	156
d1soua_	194	Hypothetical protein aq_1731 {Aquifex aeolicus [Ta	99.92
d1wkca_	175	Hypothetical protein TTHA1611 {Thermus thermophilu	99.85
d1sbqa_	164	5,10-methenyltetrahydrofolate synthetase homolog M	99.73

>d1soua_ c.124.1.6 (A:) Hypothetical protein aq_1731 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: Hypothetical protein aq 1731
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.92  E-value=9.4e-26  Score=174.60  Aligned_cols=118  Identities=21%  Similarity=0.344  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCc
Q 031626           22 QQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRK  101 (156)
Q Consensus        22 ~~K~~lR~~~~~~R~~l~~~~~~~~s~~I~~~l~~~~~~~~a~~I~~Y~s~~~~~Evdt~~li~~l~~~~~~~~~~~~gk  101 (156)
                      |.|++||++++++|++++++++..+++.|+++|.+++.+.++++|++|+|++  +||||.+|++++++         . +
T Consensus         1 M~K~~lRk~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~~~~I~~Y~p~~--~Evdt~~li~~l~~---------~-k   68 (194)
T d1soua_           1 MLKSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALYCPIK--GEVDLTPLFPEVLK---------E-K   68 (194)
T ss_dssp             CCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCHHHHHCCEEEECCCCS--SCCCCGGGHHHHHH---------H-S
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhHHhhcCCEEEEEeccc--ccCChHHHHHHHhh---------c-c
Confidence            3599999999999999999999999999999999999999999999999999  99999999999987         5 5


Q ss_pred             EEEEeeEeCCCCceEEEEeCCCCCCccCcCcccCCCCCCCCCCCCCCceeEEEEC
Q 031626          102 KLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDGILLFIML  156 (156)
Q Consensus       102 ~V~lP~v~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~~~~~~~~ldliiv~  156 (156)
                      +|+||++.  +..|.|+.|.+.+.|..|+|||+||....   ...++.+|+|||+
T Consensus        69 ~v~lP~i~--~~~m~~~~~~~~~~l~~~~~gI~EP~~~~---~~~~~~iDlilVP  118 (194)
T d1soua_          69 ELILPKVE--GNEISLYRVHSPACLGVGAFGIMEPVEGE---RVNPEDVDFIAVP  118 (194)
T ss_dssp             EEEEEEES--SSSEEEEEESSSCCCEECSSSCEECCSSE---EECGGGCSEEEEC
T ss_pred             cccccccc--hhceeeeccCCCcccccccccccCCCccc---cccccccceehhh
Confidence            89999997  45799999999999999999999997643   2345689999996

>d1wkca_ c.124.1.6 (A:) Hypothetical protein TTHA1611 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: Hypothetical protein TTHA1611
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=6.3e-22  Score=150.45  Aligned_cols=109  Identities=17%  Similarity=0.266  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCc
Q 031626           22 QQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRK  101 (156)
Q Consensus        22 ~~K~~lR~~~~~~R~~l~~~~~~~~s~~I~~~l~~~~~~~~a~~I~~Y~s~~~~~Evdt~~li~~l~~~~~~~~~~~~gk  101 (156)
                      |.|++||++++++|++++.+   +.++.|+++|+++..+..+++|++|+|++  +||||.++++   .         .|+
T Consensus         1 m~K~~lRk~~r~~r~~l~~~---~~s~~i~~~l~~~~~~~~~~~I~~Y~p~~--~Evdt~~li~---~---------~~k   63 (175)
T d1wkca_           1 MTKAELRRRARAAWRRLDLK---ALSRAVGAALLPWLRERGFRHILLYHPLP--HELNLLPLME---A---------YPA   63 (175)
T ss_dssp             CCHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHHHHHHHTCCEEECCCCCT--TCCCCTTHHH---H---------SCC
T ss_pred             CCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHHHhcCCCEEEEEEeEC--CccCcchhhh---c---------ccc
Confidence            35999999999999999754   46788999999988888999999999999  9999999986   3         568


Q ss_pred             EEEEeeEeCCCCceEEEEeCCCCCCccCcCcccCCCCCCCCCCCCCCceeEEEEC
Q 031626          102 KLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDGILLFIML  156 (156)
Q Consensus       102 ~V~lP~v~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~~~~~~~~ldliiv~  156 (156)
                      +|+||+|.  +..|.|+.|+   +|+.|+|||+||....    .....+|+|||+
T Consensus        64 ~v~lP~i~--~~~l~~~~~~---~l~~~~~gI~EP~~~~----~~~~~~DliivP  109 (175)
T d1wkca_          64 RYYLPKVA--GKGLTVHPFG---PLAPGPFGLLEPTTPP----EDPRVLDLVVVP  109 (175)
T ss_dssp             EEEEEEEE--TTEEEEEESC---CBC-------CBCSCC----BCGGGCSEEEEC
T ss_pred             eeeeeccc--ccceeecchh---hcchhhhhcccccccc----cccccccEEEee
Confidence            99999997  4579999885   6999999999998643    234679999996

>d1sbqa_ c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synthetase homolog MPN348 {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: 5,10-methenyltetrahydrofolate synthetase homolog MPN348
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=99.73  E-value=1.9e-18  Score=129.67  Aligned_cols=103  Identities=19%  Similarity=0.276  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCcCcc-CCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCC
Q 031626           22 QQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFK-SSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTR  100 (156)
Q Consensus        22 ~~K~~lR~~~~~~R~~l~~~~~~~~s~~I~~~l~~~~~~~-~a~~I~~Y~s~~~~~Evdt~~li~~l~~~~~~~~~~~~g  100 (156)
                      |.|++||++++++|++++++++.+.+..|++++.++..+. .+++|++|+|++  +||||.+++..++.         .+
T Consensus         1 M~K~~lR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~~~~~I~~Y~p~~--~Evd~~~l~~~~l~---------~~   69 (164)
T d1sbqa_           1 MDKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIK--NEVTFVDFFFEFLK---------IN   69 (164)
T ss_dssp             CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTCTTCCEEECCCCCT--TSCCCCHHHHHHHH---------HT
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhhhhhcCEEEEEeccC--CcccchHHHHHHHH---------cC
Confidence            3599999999999999999999999999999998865544 458999999999  99999999988876         55


Q ss_pred             -cEEEEeeEeCCCCceEEEEeCCCCCCccCcCcccCCCCCCCCCCCCCCceeEEEEC
Q 031626          101 -KKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDGILLFIML  156 (156)
Q Consensus       101 -k~V~lP~v~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~~~~~~~~ldliiv~  156 (156)
                       +++++|++.. +..|.|..         ..+|+.||.           .+|+|||+
T Consensus        70 ~~~~~~P~i~~-~~~~~~~~---------~~~~~~eP~-----------~iDliivP  105 (164)
T d1sbqa_          70 QIRAVYPKVIS-DTEIIFID---------QETNTFEPN-----------QIDCFLIP  105 (164)
T ss_dssp             TCEEEEEEECS-SSCEEEEC---------TTCCEECGG-----------GCCEEEEE
T ss_pred             CeEEEEeeccC-cccceecc---------ccccccCCc-----------ccCEEEee
Confidence             4899999974 56787754         356888773           47889885