Citrus Sinensis ID: 031634

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
MLLARYKELRHIEAYKYELFAPRKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLNVPDFDKVTCTVAMPTDNVGCIRRRLEQSQRRFLSNANLNSDRVLTADLKKVKSFSFFLKSKKFFFYFSWCLL
Secondary Structure (PSIPRED)
cccHHHHHHccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccEEEEccccEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHEEEEEccccccccccccccccHHHHHHHHHHHHccccccccccccHEEcHcHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccHHHHHHcHHHHcccccccccccEEEEEcccccEEEEEEEccEEEEEEEHHcc
Coil and Loop (DISEMBL)
MLLARYKELRHIEAYKYelfaprkssrsympysnvdSFLKICKILGltgidlfspsdvvekkntrKVCMCIRSLSKKarsrqlnvpdfdkvtctvamptdnvgcIRRRLEQSQRRFLSNANLNSDRVLTADLKKVKSFSFFLKSKKFFFYFSWCLL
Flexible Loop (DISEMBL)
MLLARYKELRHIEAykyelfaprkssrsyMPYSNVDSFLKICKILGLTGIDLfspsdvvekkntrkVCMCIrslskkarsrqlnvpdfdkvtctvamptdnvgCIRRRLEQSQRRflsnanlnsdrvlTADLKKVKsfsfflkskkfFFYFSWCLL
Low Complexity Region (SEG)
MLLARYKELRHIEAYKYELFAPRKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLNVPDFDKVTCTVAMPTDNVGCIRRRLEQSQRRFLSNANLNSDRVLTADLkkvksfsfflkskkfffyfsWCLL
Disordered region (IsUnstruct)
****RYKELRHIEAYKYELFAPRKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLNVPDFDKVTCTVAMPTDNVGCIRRRLEQSQRRFLSNANLNSDRVLTADLKKVKSFSFFLKSKKFFFYFSWCL*
Disordered Region (DISOPRED)
*****************************MPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLNVPDFDKVTCTV********************************************FFLKSKKFFFYFSWCLL
Disordered Region (DISEMBL)
MLLARYKELRHIEAYKYELFAPRKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLNVPDFDKVTCTVAMPTDNVGCIRRRLEQSQRRFLSNANLNSDRVLTADLKKVKSFSFFLKSKKFFFYFSWCLL
Disordered Region (DISPRO)
MLLARYKELRHIEAYKYELFAPRKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLNVPDFDKVTCTVAMPTDNVGCIRRRLEQSQRRFLSNANLNSDRVLTADLKKVKSFSFFLKSKKFFFYFSWCLL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLARYKELRHIEAYKYELFAPRKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLNVPDFDKVTCTVAMPTDNVGCIRRRLEQSQRRFLSNANLNSDRVLTADLKKVKSFSFFLKSKKFFFYFSWCLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
224122702	840	predicted protein [Populus trichocarpa]	0.705	0.130	0.756	1e-40
356511215	217	PREDICTED: uncharacterized protein LOC10	0.724	0.520	0.716	2e-40
357520219	863	hypothetical protein MTR_8g095160 [Medic	0.775	0.140	0.661	6e-40
296082642	759	unnamed protein product [Vitis vinifera]	0.692	0.142	0.745	4e-39
255544405	818	conserved hypothetical protein [Ricinus	0.685	0.130	0.736	9e-39
414872331	839	TPA: hypothetical protein ZEAMMB73_57899	0.724	0.134	0.631	4e-33
414872330	844	TPA: hypothetical protein ZEAMMB73_57899	0.724	0.133	0.631	4e-33
222625637	1113	hypothetical protein OsJ_12264 [Oryza sa	0.685	0.096	0.644	8e-33
242033261	693	hypothetical protein SORBIDRAFT_01g01081	0.724	0.163	0.601	2e-32
357117887	566	PREDICTED: uncharacterized protein LOC10	0.717	0.197	0.646	4e-32

>gi|224122702|ref|XP_002330447.1| predicted protein [Populus trichocarpa] gi|222871859|gb|EEF08990.1| predicted protein [Populus trichocarpa]

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 84/111 (75%), Positives = 94/111 (84%), Gaps = 1/111 (0%)

Query: 1   MLLARYKELRHIEAYKYELFAPRKSSRS-YMPYSNVDSFLKICKILGLTGIDLFSPSDVV 59
           ML  ++ ELR+++AYKYE FA R+S  S Y+PYSNVDSFLKICKILG+ GIDLFSPSDVV
Sbjct: 102 MLSTKHMELRYVKAYKYEPFASRRSCGSRYLPYSNVDSFLKICKILGMAGIDLFSPSDVV 161

Query: 60  EKKNTRKVCMCIRSLSKKARSRQLNVPDFDKVTCTVAMPTDNVGCIRRRLE 110
           EK++TRKVCMCIRSLSKKARS  LNVPDFD VT TV MPTD VG IRR LE
Sbjct: 162 EKRDTRKVCMCIRSLSKKARSSHLNVPDFDIVTYTVTMPTDMVGNIRRNLE 212

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511215|ref|XP_003524324.1| PREDICTED: uncharacterized protein LOC100788653 [Glycine max]

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/113 (71%), Positives = 94/113 (83%)

Query: 1   MLLARYKELRHIEAYKYELFAPRKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVE 60
           +LLA++ ELRHI+AYK + FA +K+   Y PYSNVDSFLKICKILGLTG+DLFSPSDVVE
Sbjct: 80  LLLAKHMELRHIKAYKIQPFASKKNIARYRPYSNVDSFLKICKILGLTGVDLFSPSDVVE 139

Query: 61  KKNTRKVCMCIRSLSKKARSRQLNVPDFDKVTCTVAMPTDNVGCIRRRLEQSQ 113
           ++NTRKVCMCIRS SKK+RS  +NVPDFD VTC VAMP D VGC RR +E S 
Sbjct: 140 RRNTRKVCMCIRSFSKKSRSMNINVPDFDIVTCMVAMPKDLVGCRRRSIELSH 192

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520219|ref|XP_003630398.1| hypothetical protein MTR_8g095160 [Medicago truncatula] gi|355524420|gb|AET04874.1| hypothetical protein MTR_8g095160 [Medicago truncatula]

 Score =  168 bits (426), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 80/121 (66%), Positives = 97/121 (80%)

Query: 1   MLLARYKELRHIEAYKYELFAPRKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVE 60
           +LL ++ ELRHI++YK   FA R++S  Y PYSNVDSFLKICKILGLTG+DLF+PSDVVE
Sbjct: 86  LLLEKHMELRHIKSYKSHPFASRRNSGMYRPYSNVDSFLKICKILGLTGVDLFTPSDVVE 145

Query: 61  KKNTRKVCMCIRSLSKKARSRQLNVPDFDKVTCTVAMPTDNVGCIRRRLEQSQRRFLSNA 120
           +KNTR+VC+CIRS SKK+RS  +NVPDFD VTC VAMP D V CIRR +E SQ     ++
Sbjct: 146 RKNTRRVCICIRSFSKKSRSMNVNVPDFDIVTCMVAMPKDMVRCIRRSIELSQSILADSS 205

Query: 121 N 121
           N
Sbjct: 206 N 206

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082642|emb|CBI21647.3| unnamed protein product [Vitis vinifera]

 Score =  166 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 82/110 (74%), Positives = 92/110 (83%), Gaps = 2/110 (1%)

Query: 1   MLLARYKELRHIEAYKYELFAPRKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVE 60
           MLL    E++H++AYK    + RKSS  Y PYSNVDSFLKI KILGLTGIDLFSPSDVVE
Sbjct: 69  MLLTNRMEIKHLKAYK--AVSSRKSSGRYRPYSNVDSFLKISKILGLTGIDLFSPSDVVE 126

Query: 61  KKNTRKVCMCIRSLSKKARSRQLNVPDFDKVTCTVAMPTDNVGCIRRRLE 110
           K+NTR+VCMCIRSLSKKARS+ L+VPDFD VT TVAMPT+ VGCIRR LE
Sbjct: 127 KRNTRRVCMCIRSLSKKARSKNLDVPDFDIVTYTVAMPTNMVGCIRRSLE 176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544405|ref|XP_002513264.1| conserved hypothetical protein [Ricinus communis] gi|223547638|gb|EEF49132.1| conserved hypothetical protein [Ricinus communis]

 Score =  164 bits (416), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 81/110 (73%), Positives = 91/110 (82%), Gaps = 3/110 (2%)

Query: 1   MLLARYKELRHIEAYKYELFAPRKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVE 60
           M+L ++ EL++   Y+YE FA R S R YMPYSNVDSFLKICKILGL GID+FSPSDVVE
Sbjct: 96  MMLEKHMELKY--KYEYEPFASRNSGR-YMPYSNVDSFLKICKILGLAGIDIFSPSDVVE 152

Query: 61  KKNTRKVCMCIRSLSKKARSRQLNVPDFDKVTCTVAMPTDNVGCIRRRLE 110
           K++TRKVCMCIR+LSKKAR R LNVPDFD VTCT AMPTD VG IRR  E
Sbjct: 153 KRDTRKVCMCIRALSKKARLRHLNVPDFDIVTCTAAMPTDMVGYIRRSWE 202

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414872331|tpg|DAA50888.1| TPA: hypothetical protein ZEAMMB73_578996 [Zea mays]

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 72/114 (63%), Positives = 86/114 (75%), Gaps = 1/114 (0%)

Query: 1   MLLARYKE-LRHIEAYKYELFAPRKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVV 59
           MLL   +E L+  + Y YE  +  +SS  YMPYS VDSFLKIC+ILGL GIDLF+PSDVV
Sbjct: 110 MLLKNNREQLKQSKVYIYERLSFGRSSGKYMPYSKVDSFLKICQILGLAGIDLFTPSDVV 169

Query: 60  EKKNTRKVCMCIRSLSKKARSRQLNVPDFDKVTCTVAMPTDNVGCIRRRLEQSQ 113
           EK+N RKVC+CIRS+SKK+    LNVPDFD VT T++MP   VG IRR LEQ+Q
Sbjct: 170 EKRNVRKVCICIRSVSKKSLILHLNVPDFDVVTYTISMPNYVVGGIRRNLEQTQ 223

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414872330|tpg|DAA50887.1| TPA: hypothetical protein ZEAMMB73_578996 [Zea mays]

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 72/114 (63%), Positives = 86/114 (75%), Gaps = 1/114 (0%)

Query: 1   MLLARYKE-LRHIEAYKYELFAPRKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVV 59
           MLL   +E L+  + Y YE  +  +SS  YMPYS VDSFLKIC+ILGL GIDLF+PSDVV
Sbjct: 110 MLLKNNREQLKQSKVYIYERLSFGRSSGKYMPYSKVDSFLKICQILGLAGIDLFTPSDVV 169

Query: 60  EKKNTRKVCMCIRSLSKKARSRQLNVPDFDKVTCTVAMPTDNVGCIRRRLEQSQ 113
           EK+N RKVC+CIRS+SKK+    LNVPDFD VT T++MP   VG IRR LEQ+Q
Sbjct: 170 EKRNVRKVCICIRSVSKKSLILHLNVPDFDVVTYTISMPNYVVGGIRRNLEQTQ 223

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222625637|gb|EEE59769.1| hypothetical protein OsJ_12264 [Oryza sativa Japonica Group]

 Score =  144 bits (364), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 69/107 (64%), Positives = 82/107 (76%)

Query: 7   KELRHIEAYKYELFAPRKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRK 66
           ++++  + Y YE  +  KS+  YMPY  VDSFLKIC+ILGL GIDLF+PSDVVEK+N RK
Sbjct: 84  EQMKQSKVYIYERTSSGKSNGKYMPYPKVDSFLKICQILGLAGIDLFTPSDVVEKRNVRK 143

Query: 67  VCMCIRSLSKKARSRQLNVPDFDKVTCTVAMPTDNVGCIRRRLEQSQ 113
           VCMCIR LSKKAR+ +L VPDFD VT T+AMP   VG IRR LEQ Q
Sbjct: 144 VCMCIRLLSKKARTMRLTVPDFDIVTHTIAMPNYIVGGIRRSLEQPQ 190

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242033261|ref|XP_002464025.1| hypothetical protein SORBIDRAFT_01g010810 [Sorghum bicolor] gi|241917879|gb|EER91023.1| hypothetical protein SORBIDRAFT_01g010810 [Sorghum bicolor]

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/113 (60%), Positives = 84/113 (74%)

Query: 1   MLLARYKELRHIEAYKYELFAPRKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVE 60
           +L    ++L+  + Y +E  +  +SS  YMPYS VDSFLKIC+ILGL GIDLF+PSDVVE
Sbjct: 112 LLKKNIEQLKQSKVYIFERLSFGRSSGKYMPYSKVDSFLKICQILGLAGIDLFTPSDVVE 171

Query: 61  KKNTRKVCMCIRSLSKKARSRQLNVPDFDKVTCTVAMPTDNVGCIRRRLEQSQ 113
           K+N RKVC+CIRS+SKK+    LNVPDFD VT T++MP   VG IRR LEQ Q
Sbjct: 172 KRNVRKVCICIRSVSKKSHIMHLNVPDFDIVTYTISMPNYVVGGIRRSLEQPQ 224

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357117887|ref|XP_003560693.1| PREDICTED: uncharacterized protein LOC100824451 [Brachypodium distachyon]

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 73/113 (64%), Positives = 83/113 (73%), Gaps = 1/113 (0%)

Query: 2   LLARYKE-LRHIEAYKYELFAPRKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVE 60
           LL + KE L+  + Y YE  +  KS+  Y PY  VDSFLKIC+ILGL GIDLF+PSDVVE
Sbjct: 81  LLRKNKEQLKQSKVYIYERTSFGKSNGKYTPYPKVDSFLKICQILGLAGIDLFTPSDVVE 140

Query: 61  KKNTRKVCMCIRSLSKKARSRQLNVPDFDKVTCTVAMPTDNVGCIRRRLEQSQ 113
           K+N RKVCMCIRSLSKKA    LNVPDFD VT T+AMP   VG IRR LEQ +
Sbjct: 141 KRNVRKVCMCIRSLSKKAGMMHLNVPDFDVVTHTIAMPNYMVGVIRRSLEQPR 193

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
DICTYBASE|DDB_G0289033	1589	DDB_G0289033 "growth-arrest-sp	0.371	0.036	0.413	4.3e-05

DICTYBASE|DDB_G0289033 DDB_G0289033 "growth-arrest-specific protein 2 domain-containing protein (GAS2)" [Dictyostelium discoideum (taxid:44689)]

 Score = 112 (44.5 bits), Expect = 4.3e-05, P = 4.3e-05
 Identities = 24/58 (41%), Positives = 34/58 (58%)

Query:    24 KSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSR 81
             K   SYM   N++ FL  C  LG++   LF P+D+ EKKN +KV  C+ +LS +   R
Sbjct:   156 KKGPSYMKLENINFFLCACLELGVSSNCLFLPTDLYEKKNLKKVIYCLLALSIQGSKR 213


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.136   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      156       136   0.00091  102 3  11 22  0.50    30
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  552 (59 KB)
  Total size of DFA:  123 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.83u 0.12s 14.95t   Elapsed:  00:00:00
  Total cpu time:  14.83u 0.12s 14.95t   Elapsed:  00:00:00
  Start:  Thu May  9 17:05:29 2013   End:  Thu May  9 17:05:29 2013

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_1350043 hypothetical protein (840 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	156
COG5199	178	COG5199, SCP1, Calponin [Cytoskeleton]	6e-04

>gnl|CDD|227526 COG5199, SCP1, Calponin [Cytoskeleton]

 Score = 38.0 bits (88), Expect = 6e-04
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 28  SYMPY---SNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKA 78
           S MP+    N+ SF+   K L +   +LF  +D+ E K+ R+V +C+ SLS+ A
Sbjct: 63  SKMPFVQMENISSFINGLKKLRVPEYELFQTNDLFEAKDLRQVVICLYSLSRYA 116

Length = 178

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	156
KOG2046	193	consensus Calponin [Cytoskeleton]	99.89
COG5199	178	SCP1 Calponin [Cytoskeleton]	99.79
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.29
KOG2128	1401	consensus Ras GTPase-activating protein family - I	99.22
cd00014	107	CH Calponin homology domain; actin-binding domain	99.16
COG5261	1054	IQG1 Protein involved in regulation of cellular mo	99.14
smart00033	103	CH Calponin homology domain. Actin binding domains	98.8
PF00307	108	CH: Calponin homology (CH) domain; InterPro: IPR00	98.23
KOG2996	865	consensus Rho guanine nucleotide exchange factor V	98.09
PF06395	89	CDC24: CDC24 Calponin; InterPro: IPR010481 This is	94.56

>KOG2046 consensus Calponin [Cytoskeleton]

Probab=99.89  E-value=6.1e-24  Score=173.24  Aligned_cols=90  Identities=23%  Similarity=0.357  Sum_probs=82.0

Q ss_pred             eeecCCCCcccCCC---CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcCC-CCCccc
Q 031634           14 AYKYELFAPRKSSR---SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQL-NVPDFD   89 (156)
Q Consensus        14 ~n~l~Pgsv~Ki~~---~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g~-~~P~lg   89 (156)
                      +|+|+||++++++.   .|.+||||++|++||++|||+++|+|||+||||++|+.+|+.||++|+|+|+++++ ..|.|+
T Consensus        62 ~N~l~p~~~~~~~~s~~~f~qmEnIs~Fi~a~~~ygv~~~d~FqtvDLfE~kd~~~V~vtL~aLa~~a~~~~~~~~~~~g  141 (193)
T KOG2046|consen   62 INKLYPGVVKKINESKMAFVQMENISNFIKAAKKYGVPEVDLFQTVDLFEGKDMAQVQVTLLALARKAQKKGLFSGPGIG  141 (193)
T ss_pred             HHHhCcCcccccccccccHHHHHHHHHHHHHHHhcCCChhhcccccccccCCCHHHHHHHHHHHHHHHhhccccCCCCcC
Confidence            79999999998854   58899999999999999999999999999999999999999999999999999875 458898


Q ss_pred             CCCccccCCcchhhhhhhhhhh
Q 031634           90 KVTCTVAMPTDNVGCIRRRLEQ  111 (156)
Q Consensus        90 ~~~~~v~~pk~~~~~~R~~le~  111 (156)
                              |+.+++++|+|-+.
T Consensus       142 --------~k~a~kq~r~f~~~  155 (193)
T KOG2046|consen  142 --------PKLAEKQPREFTDE  155 (193)
T ss_pred             --------CchhhcCcccCCHH
Confidence                    89999999977553

>COG5199 SCP1 Calponin [Cytoskeleton]

Probab=99.79  E-value=3.1e-20  Score=147.75  Aligned_cols=86  Identities=24%  Similarity=0.355  Sum_probs=73.3

Q ss_pred             eecCCCCcc--cCCCCCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhc-CCCCCcccCC
Q 031634           15 YKYELFAPR--KSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSR-QLNVPDFDKV   91 (156)
Q Consensus        15 n~l~Pgsv~--Ki~~~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~-g~~~P~lg~~   91 (156)
                      |...|+-|+  ..+..|.|||||+.||++.+++|||+.+||||+||||+||.+||++||++|+|+|++. -..+|.+|  
T Consensus        51 ~ea~~~~I~yKeSkmpFVQmenIs~Fin~~~k~~vpe~elFQT~DLFE~kd~~qV~~~l~slSRya~K~~~~~~p~lG--  128 (178)
T COG5199          51 NEASPLDIKYKESKMPFVQMENISSFINGLKKLRVPEYELFQTNDLFEAKDLRQVVICLYSLSRYAQKERMFSGPFLG--  128 (178)
T ss_pred             hhcCcccceecccCCceeeHHHHHHHHHHHHHhCCCHHHHHHhhhHHhhcCHHHHHHHHHHHHHHHHHhcCCCCCccC--
Confidence            444555553  3345899999999999999999999999999999999999999999999999999986 45789999  


Q ss_pred             CccccCCcchhhhhhhh
Q 031634           92 TCTVAMPTDNVGCIRRR  108 (156)
Q Consensus        92 ~~~v~~pk~~~~~~R~~  108 (156)
                            |.-++..+|.|
T Consensus       129 ------P~LatKkprvf  139 (178)
T COG5199         129 ------PHLATKKPRVF  139 (178)
T ss_pred             ------ccccccCCccc
Confidence                  67777777766

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.29  E-value=6.3e-13  Score=123.65  Aligned_cols=76  Identities=34%  Similarity=0.449  Sum_probs=72.5

Q ss_pred             ccccccccceeeeecCCCCcccCCCCCCCcccHHHHHHHHHHcCCCCCCCCCcCccccc--cChHHHHHHHHHHHHHHH
Q 031634            3 LARYKELRHIEAYKYELFAPRKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEK--KNTRKVCMCIRSLSKKAR   79 (156)
Q Consensus         3 ~~~~~~~~~~~~n~l~Pgsv~Ki~~~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~--kN~~qVv~cL~aLgr~A~   79 (156)
                      |+||+|||+|++..+...+|+|++ +-+++-|+++||+|||++|||+.||+...|+..+  +|+++|..++.++|.+|+
T Consensus       610 LaN~lRPRSV~SIHVPSPaV~kls-marcrrNVdnFLeaCRkiGVpEa~lCS~~Dilq~~~r~~rk~~~t~~~~~~~a~  687 (722)
T KOG0532|consen  610 LANHLRPRSVASIHVPSPAVPKLS-MARCRRNVDNFLEACRKIGVPEADLCSPMDILQKIERNPRKVARTVLTVGKKAQ  687 (722)
T ss_pred             hhcccCCCCccceecCCCccchhH-HHHHHHhHHHHHHHHHHcCCChHhhcCHHHhhhhhcccchhHHHHHHhhccccC
Confidence            799999999999999999999998 4788899999999999999999999999999987  999999999999998885

>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]

Probab=99.22  E-value=7e-12  Score=123.94  Aligned_cols=96  Identities=21%  Similarity=0.319  Sum_probs=80.9

Q ss_pred             eecCCCCcccC---C-CCCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcCCCCCcccC
Q 031634           15 YKYELFAPRKS---S-RSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLNVPDFDK   90 (156)
Q Consensus        15 n~l~Pgsv~Ki---~-~~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g~~~P~lg~   90 (156)
                      |.++|..--++   + ..|++-+||..|+.|++.+|+|+...|+|.|+||+|||+ |+.|||||+.+..+.|.+ |.+-.
T Consensus        80 ~~f~PD~~~~~~~~~~~~frHtdNi~q~~~~me~iglP~iF~~E~~Dvy~~kN~p-~i~cihaLs~~l~k~~~a-P~l~~  157 (1401)
T KOG2128|consen   80 QFFAPDLEQTIYKANDLHFRHTDNINQWLRAMESIGLPEIFYPETTDVYEGKNIP-VIYCIHALSLYLFKQGKA-PPLQN  157 (1401)
T ss_pred             hhcCCcceeeeeecCCceeecchhHHHHHHHHhhcCCCcccccchhhhhcCCCCc-eeeHHHHHHHHHhcCCCC-ccccc
Confidence            45555443333   2 269999999999999999999999999999999999999 999999999999998864 77878


Q ss_pred             CCccccCCcchhhhhhhhhhhc
Q 031634           91 VTCTVAMPTDNVGCIRRRLEQS  112 (156)
Q Consensus        91 ~~~~v~~pk~~~~~~R~~le~~  112 (156)
                      +...+.+-++-..++++.|++.
T Consensus       158 ~~gk~~Ft~eei~~~k~~l~~~  179 (1401)
T KOG2128|consen  158 LSGKVSFTEEEISNMKKELEKS  179 (1401)
T ss_pred             ccccCCccHHHHHHHHHHHHHH
Confidence            8888888887777888888765

>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)

Probab=99.16  E-value=8.8e-12  Score=88.52  Aligned_cols=64  Identities=20%  Similarity=0.220  Sum_probs=56.9

Q ss_pred             eeecCCCCcccCC----CCCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHH
Q 031634           14 AYKYELFAPRKSS----RSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKA   78 (156)
Q Consensus        14 ~n~l~Pgsv~Ki~----~~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A   78 (156)
                      +|.+.|+.++...    ..+.+++||+.|+++|+++||+.. +|++.||+|++|+.+|+.||.+|.++.
T Consensus        39 l~~~~p~~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~gi~~~-~~~~~Dl~~~~n~~~vl~~l~~l~~~~  106 (107)
T cd00014          39 LNSLSPDLIDKKKINPLSRFKRLENINLALNFAEKLGVPVV-NFDAEDLVEDGDEKLVLGLLWSLIRKF  106 (107)
T ss_pred             HHHHCccccccccccccchhhHHHHHHHHHHHHHHcCCcee-ccCHHHHhhCCCceeeHHHHHHHHHhh
Confidence            3678888887664    367788999999999999999999 999999999999999999999999763

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).

>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]

Probab=99.14  E-value=3.3e-11  Score=115.34  Aligned_cols=82  Identities=21%  Similarity=0.291  Sum_probs=69.1

Q ss_pred             ecCCCCcccC----CCCCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcCCCCCcccCC
Q 031634           16 KYELFAPRKS----SRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLNVPDFDKV   91 (156)
Q Consensus        16 ~l~Pgsv~Ki----~~~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g~~~P~lg~~   91 (156)
                      +++|.++.+|    ...|++.+||+.||.....+|+|+..-|+..||||+||+++|++|||||+......|.+ | +-..
T Consensus        82 ~f~pd~~~~iF~~~~LQfrHtdNIN~Fld~i~~vGlPe~FhFEl~DlYekKN~pkViyciHaL~~~ls~~g~t-p-li~s  159 (1054)
T COG5261          82 RFNPDLTTVIFPADKLQFRHTDNINAFLDLIEHVGLPESFHFELQDLYEKKNIPKVIYCIHALISMLSWPGKT-P-LINS  159 (1054)
T ss_pred             HhCCCceeEeeecccceeeccccHHHHHhHhhhcCCcceeeeehHhhhccCCcchhHHHHHHHHHHhcCCCCC-c-cccc
Confidence            5678888777    23688999999999999999999999999999999999999999999999999777754 5 5555


Q ss_pred             CccccCCc
Q 031634           92 TCTVAMPT   99 (156)
Q Consensus        92 ~~~v~~pk   99 (156)
                      ...+.+-+
T Consensus       160 ~~~~sFt~  167 (1054)
T COG5261         160 SGQISFTK  167 (1054)
T ss_pred             ccCccccH
Confidence            55555544

>smart00033 CH Calponin homology domain

Probab=98.80  E-value=8.9e-10  Score=77.30  Aligned_cols=60  Identities=23%  Similarity=0.232  Sum_probs=51.0

Q ss_pred             eeecCCCCcccCCC-----CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccc-cChHHHHHHHHHH
Q 031634           14 AYKYELFAPRKSSR-----SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEK-KNTRKVCMCIRSL   74 (156)
Q Consensus        14 ~n~l~Pgsv~Ki~~-----~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~-kN~~qVv~cL~aL   74 (156)
                      +|.+.|+.+++...     .+.+++||+.|+++|+++| ....+|++.||+++ +++.+|+.||+++
T Consensus        38 ~~~l~p~~i~~~~~~~~~~~~~~~~Ni~~~l~~~~~~g-~~~~~~~~~Dl~~~~k~~~~v~~~l~~~  103 (103)
T smart00033       38 LNSLSPGSVDKKKVNASLSRFKKIENINLALSFAEKLG-GKLVLFEPEDLVEGNKLILGVIWTLILL  103 (103)
T ss_pred             HHHHCCCcCChhhccccccHHHHHHhHHHHHHHHHHcC-CeeeccCHHHHhhcchHHHHHHHHHHhC
Confidence            36788888876532     3667799999999999998 67789999999999 8999999999864

Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.

>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []

Probab=98.23  E-value=5.9e-07  Score=63.56  Aligned_cols=63  Identities=22%  Similarity=0.242  Sum_probs=49.5

Q ss_pred             eeecCCCCc--ccCC----CCCCCcccHHHHHHHHHH-cCCCCCCCCCcCccccccChHHHHHHHHHHHHHH
Q 031634           14 AYKYELFAP--RKSS----RSYMPYSNVDSFLKICKI-LGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKA   78 (156)
Q Consensus        14 ~n~l~Pgsv--~Ki~----~~f~~~ENIs~FL~ack~-lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A   78 (156)
                      ++.+.|+.+  .+++    ..+.+++||..|+++|++ +|++...  .+.||++.+|...|+.+|.+|.++-
T Consensus        38 i~~l~p~~i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~lg~~~~~--~~~dl~~~~~~~~vl~~l~~l~~~~  107 (108)
T PF00307_consen   38 INKLFPGTIDLKKINPNLKSPFDKLENIELALEAAEKKLGIPPLL--SPEDLVEKGDEKSVLSFLWQLFRYF  107 (108)
T ss_dssp             HHHHSTTSSSGGGSSTSSSSHHHHHHHHHHHHHHHHHHTTSSCTS---HHHHHSTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHhhccchhhhccccchhhhHHHHHHHHHHHHHHHHcCCCCCC--CHHHHHHCcCHHHHHHHHHHHHHHH
Confidence            355667765  3332    225677999999999998 9999988  9999999999999999999998763

It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....

>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]

Probab=98.09  E-value=2.7e-06  Score=80.09  Aligned_cols=71  Identities=21%  Similarity=0.347  Sum_probs=61.7

Q ss_pred             eeecCCCCc--ccCCC-----CCCCcccHHHHHHHHH-HcCCCCCCCCCcCccccccChHHHHHHHHHHHH--HHHhcCC
Q 031634           14 AYKYELFAP--RKSSR-----SYMPYSNVDSFLKICK-ILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSK--KARSRQL   83 (156)
Q Consensus        14 ~n~l~Pgsv--~Ki~~-----~f~~~ENIs~FL~ack-~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr--~A~~~g~   83 (156)
                      .|.|.|++|  ++|+.     .|.+..||..||.+|. .+|+.+.+||+.-|||+-++..+|+.+|..|+.  .|+.+|+
T Consensus        47 lnnL~p~sIdlkeIn~rpQmSqFLClkNIrtFl~~C~~~Fglr~seLF~afDLfdv~dFgKVi~tlS~LS~t~ial~rGi  126 (865)
T KOG2996|consen   47 LNNLVPHSIDLKEINLRPQMSQFLCLKNIRTFLMFCCEKFGLRDSELFEAFDLFDVRDFGKVIKTLSRLSHTPIALNRGI  126 (865)
T ss_pred             HhhcCCCcccHHHhhcCCCccchhhHhhHHHHHHHHHHHhCCchhhhcchhhhhhhhhHHHHHHHHHHhccChHHHhcCC
Confidence            578889998  66653     5888899999999998 599999999999999999999999999999985  5677775


Q ss_pred             C
Q 031634           84 N   84 (156)
Q Consensus        84 ~   84 (156)
                      .
T Consensus       127 ~  127 (865)
T KOG2996|consen  127 R  127 (865)
T ss_pred             C
Confidence            3

>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain

Probab=94.56  E-value=0.051  Score=39.93  Aligned_cols=41  Identities=27%  Similarity=0.449  Sum_probs=32.9

Q ss_pred             cccHHHHHHHHH-HcCCCCCCCCCcCccccc--cChHHHHHHHH
Q 031634           32 YSNVDSFLKICK-ILGLTGIDLFSPSDVVEK--KNTRKVCMCIR   72 (156)
Q Consensus        32 ~ENIs~FL~ack-~lGV~~~dLFqT~DLyE~--kN~~qVv~cL~   72 (156)
                      -..|-.|+.+|+ ++|+++.++|.-+|||..  ...-+|+..+.
T Consensus        43 K~ai~~Fi~ack~~L~~~~~e~FtIsdl~~~dT~gfvKVi~~V~   86 (89)
T PF06395_consen   43 KKAIYKFIQACKQELGFPDEELFTISDLYGDDTNGFVKVIKVVN   86 (89)
T ss_pred             HHHHHHHHHHHHHhcCCCccceeeeeccccCCCcchhhHHHHHH
Confidence            367888999998 599999999999999974  45566665554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	156
1p2x_A	159	Crystal Structure Of The Calponin-Homology Domain O		1e-04
1p5s_A	203	Structure And Function Of The Calponin-Homology Dom		2e-04

>pdb|1P2X|A Chain A, Crystal Structure Of The Calponin-Homology Domain Of Rng2 From Schizosaccharomyces Pombe Length = 159

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 34  NVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLNVPDFDKVTC 93
           N++ FL     +GL  I  F  +D+ E KN  KV  CI +LS     + L  P   K   
Sbjct: 72  NINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQDL-APPLIKSDE 130
Query: 94  TVAMPTDNVGCIRRRLEQS 112
            ++   ++V  I RRL QS
Sbjct: 131 NLSFTDEDVSIIVRRLRQS 149

>pdb|1P5S|A Chain A, Structure And Function Of The Calponin-Homology Domain Of An Iqgap Protein From Schizosaccharomyces Pombe Length = 203

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 34  NVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLNVPDFDKVTC 93
           N++ FL     +GL  I  F  +D+ E KN  KV  CI +LS     + L  P   K   
Sbjct: 116 NINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQDL-APPLIKSDE 174
Query: 94  TVAMPTDNVGCIRRRLEQS 112
            ++   ++V  I RRL QS
Sbjct: 175 NLSFTDEDVSIIVRRLRQS 193

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	156
1h67_A	108	Calponin alpha; cytoskeleton, calponin homology do	6e-14
1wyp_A	136	Calponin 1; CH domain, F-actin binding, all-alpha,	8e-14
1p2x_A	159	RNG2 protein, RAS GTPase-activating-like protein;	9e-14
1p5s_A	203	RAS GTPase-activating-like protein RNG2; alpha-hel	1e-13
1wym_A	155	Transgelin-2; CH domain, F-actin binding, all heli	2e-13
1ujo_A	144	Transgelin; CH domain, actin binding, structural g	3e-13
2rr8_A	190	Iqgap1 protein; F-actin binding protein, protein b	1e-12
1wyn_A	146	Calponin-2; CH domain, F-actin binding, all alpha	3e-12
3i6x_A	193	P195, RAS GTPase-activating-like protein iqgap1; a	8e-12
2l3g_A	126	RHO guanine nucleotide exchange factor 7; structur	4e-09
1wyr_A	121	RHO guanine nucleotide exchange factor 6; CH domai	6e-09

>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1 Length = 108

 Score = 63.2 bits (154), Expect = 6e-14
 Identities = 13/59 (22%), Positives = 31/59 (52%)

Query: 23  RKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSR 81
               +++    N+ +FL+  K  G+   D+F  +D+ E  N  +V   + +L+ +A+++
Sbjct: 50  NDPVQNWHKLENIGNFLRAIKHYGVKPHDIFEANDLFENTNHTQVQSTLIALASQAKTK 108

>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 136

 Score = 63.3 bits (154), Expect = 8e-14
 Identities = 14/63 (22%), Positives = 33/63 (52%)

Query: 24  KSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQL 83
           +S++++    N+ +F+K     G+   D+F  +D+ E  N  +V   + +L+  A+++  
Sbjct: 65  ESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTLLALASMAKTKGN 124

Query: 84  NVP 86
            V 
Sbjct: 125 KVN 127

>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 159

 Score = 63.7 bits (155), Expect = 9e-14
 Identities = 19/69 (27%), Positives = 28/69 (40%)

Query: 23  RKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQ 82
             +   +    N++ FL     +GL  I  F  +D+ E KN  KV  CI +LS     + 
Sbjct: 61  YSNELQFRHSDNINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQD 120

Query: 83  LNVPDFDKV 91
           L  P     
Sbjct: 121 LAPPLIKSD 129

>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 203

 Score = 64.6 bits (157), Expect = 1e-13
 Identities = 19/69 (27%), Positives = 28/69 (40%)

Query: 23  RKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQ 82
             +   +    N++ FL     +GL  I  F  +D+ E KN  KV  CI +LS     + 
Sbjct: 105 YSNELQFRHSDNINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQD 164

Query: 83  LNVPDFDKV 91
           L  P     
Sbjct: 165 LAPPLIKSD 173

>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} Length = 155

 Score = 62.7 bits (152), Expect = 2e-13
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 22  PRKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSR 81
            + S+ ++     +  FL+  +  G+   D+F   D+ E KN   V   + +L   A +R
Sbjct: 72  IQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVAR 131

Query: 82  Q 82
            
Sbjct: 132 D 132

>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1 Length = 144

 Score = 61.9 bits (150), Expect = 3e-13
 Identities = 14/61 (22%), Positives = 24/61 (39%)

Query: 22  PRKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSR 81
               S  +     V  FLK  +  G+   D+F   D+ E K+   V   + +L   A ++
Sbjct: 65  ENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLYEGKDMAAVQRTLMALGSLAVTK 124

Query: 82  Q 82
            
Sbjct: 125 N 125

>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens} Length = 190

 Score = 61.1 bits (148), Expect = 1e-12
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 2/91 (2%)

Query: 1   MLLARYKELRHIEAYKYELFAPRKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVE 60
               +   L+ I  Y  E    + +   +    NV  +L     +GL  I     +D+ +
Sbjct: 64  FFSPKVVSLKKI--YDREQTRYKATGLHFRHTDNVIQWLNAMDEIGLPKIFYPETTDIYD 121

Query: 61  KKNTRKVCMCIRSLSKKARSRQLNVPDFDKV 91
           +KN  +   CI +LS       L     D  
Sbjct: 122 RKNMPRCIYCIHALSLYLFKLGLAPQIQDLY 152

>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 146

 Score = 59.9 bits (145), Expect = 3e-12
 Identities = 16/60 (26%), Positives = 35/60 (58%)

Query: 24  KSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQL 83
           +S +++    N+ +F+K     G+  +DLF  +D+ E  N  +V + + +L+ KA+++ L
Sbjct: 65  RSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVSLLALAGKAKTKGL 124

>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens} Length = 193

 Score = 59.3 bits (143), Expect = 8e-12
 Identities = 17/77 (22%), Positives = 28/77 (36%)

Query: 15  YKYELFAPRKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSL 74
           Y  E    + +   +    NV  +L     +GL  I     +D+ ++KN  +   CI +L
Sbjct: 98  YDREQTRYKATGLHFRHTDNVIQWLNAMDEIGLPKIFYPETTDIYDRKNMPRCIYCIHAL 157

Query: 75  SKKARSRQLNVPDFDKV 91
           S       L     D  
Sbjct: 158 SLYLFKLGLAPQIQDLY 174

>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens} Length = 126

 Score = 50.8 bits (121), Expect = 4e-09
 Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 23  RKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSR 81
            +        SN+  FL+ C       ++ F  +D+ + +N  KV   + +L+K     
Sbjct: 68  PEPRSESECLSNIREFLRGCG--ASLRLETFDANDLYQGQNFNKVLSSLVTLNKVTADI 124

>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 121

 Score = 50.3 bits (120), Expect = 6e-09
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 23  RKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQ 82
                     +N++ FLK C  L +   ++F P D+    N  KV   + +++K   S  
Sbjct: 62  LDPQTEADCINNINDFLKGCATLQV---EIFDPDDLYSGVNFSKVLSTLLAVNKATESGP 118

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	156
1wyn_A	146	Calponin-2; CH domain, F-actin binding, all alpha	99.94
1wym_A	155	Transgelin-2; CH domain, F-actin binding, all heli	99.93
1wyp_A	136	Calponin 1; CH domain, F-actin binding, all-alpha,	99.92
1p2x_A	159	RNG2 protein, RAS GTPase-activating-like protein;	99.91
1ujo_A	144	Transgelin; CH domain, actin binding, structural g	99.9
1p5s_A	203	RAS GTPase-activating-like protein RNG2; alpha-hel	99.89
3i6x_A	193	P195, RAS GTPase-activating-like protein iqgap1; a	99.89
2rr8_A	190	Iqgap1 protein; F-actin binding protein, protein b	99.89
1h67_A	108	Calponin alpha; cytoskeleton, calponin homology do	99.88
2l3g_A	126	RHO guanine nucleotide exchange factor 7; structur	99.83
1wyr_A	121	RHO guanine nucleotide exchange factor 6; CH domai	99.82
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	99.69
2yrn_A	129	Neuron navigator 2 isoform 4; calponin homolgy dom	98.43
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	97.75
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	97.1
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	96.78
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	96.64
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	96.52
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	96.43
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	95.89
2qjz_A	123	Microtubule-associated protein RP/EB family member	95.77
1wyo_A	159	Protein EB3, microtubule-associated protein RP/EB	95.34
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	95.21
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	92.79
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	87.25

>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.94  E-value=3e-28  Score=188.44  Aligned_cols=90  Identities=22%  Similarity=0.286  Sum_probs=84.8

Q ss_pred             eeecCCCCcccCCC---CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcCC-CCCccc
Q 031634           14 AYKYELFAPRKSSR---SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQL-NVPDFD   89 (156)
Q Consensus        14 ~n~l~Pgsv~Ki~~---~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g~-~~P~lg   89 (156)
                      +|+|+||+|+||+.   +|+++|||++||+||+.+|||++++|+|+||||++|+++|+.||++|+++|.++|+ ++|.+|
T Consensus        52 ~N~l~P~~v~kin~~~~~f~~~eNI~~FL~a~~~~Gv~~~~lF~~~DL~e~kn~~~V~~cL~aL~~~a~~~g~~~~p~~g  131 (146)
T 1wyn_A           52 MNKLQPGSVPKINRSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGNMTQVQVSLLALAGKAKTKGLQSGVDIG  131 (146)
T ss_dssp             HHHHCTTSCSCCCCSSCHHHHHHHHHHHHHHHHHHTCCSSSCCCHHHHHTCSCSHHHHHHHHHHHHHHGGGTSCCCSCCC
T ss_pred             HHHhCCCCccccccccccccHHHHHHHHHHHHHHcCCCcccccChhHHHhcCChHHHHHHHHHHHHHHHhCCCCCCCccc
Confidence            68999999999975   58889999999999999999999999999999999999999999999999999998 689999


Q ss_pred             CCCccccCCcchhhhhhhhhhh
Q 031634           90 KVTCTVAMPTDNVGCIRRRLEQ  111 (156)
Q Consensus        90 ~~~~~v~~pk~~~~~~R~~le~  111 (156)
                              |+.+++|.|+|.|+
T Consensus       132 --------~k~a~~~~r~f~e~  145 (146)
T 1wyn_A          132 --------VKYSEKQERSGPSS  145 (146)
T ss_dssp             --------CCCCCCCCCCSSCC
T ss_pred             --------eeccccCCCCCCCC
Confidence                    89999999999774

>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}

Probab=99.93  E-value=3.1e-27  Score=184.13  Aligned_cols=91  Identities=16%  Similarity=0.118  Sum_probs=82.9

Q ss_pred             eeecCC---CCcccCCC---CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcCCCCCc
Q 031634           14 AYKYEL---FAPRKSSR---SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLNVPD   87 (156)
Q Consensus        14 ~n~l~P---gsv~Ki~~---~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g~~~P~   87 (156)
                      +|+|+|   |+|+||+.   +|++||||++||+||+.||||++++|+|+||||++|+++|+.||++|+++|+++|. +|.
T Consensus        58 ~N~l~P~~~~~i~kIn~~~~~F~~~eNI~~FL~ac~~~Gv~~~~lF~t~DL~e~kn~~~Vi~cL~aL~~~a~~~~~-gp~  136 (155)
T 1wym_A           58 INALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARDD-GLF  136 (155)
T ss_dssp             HHHHSCTTTCSCCCCCCCCCHHHHHHHHHHHHHHHHHHTCCTTTCCCHHHHHTCSCHHHHHHHHHHHHHHHTTCSS-SCC
T ss_pred             HHHhccccCCCcCcccCCCccccHHHHHHHHHHHHHHcCCCccccCChHHHHhcCCHHHHHHHHHHHHHHHHHCCC-CCc
Confidence            688999   99999975   48899999999999999999999999999999999999999999999999999997 888


Q ss_pred             ccCCCccccCCcchhhhhhhh
Q 031634           88 FDKVTCTVAMPTDNVGCIRRR  108 (156)
Q Consensus        88 lg~~~~~v~~pk~~~~~~R~~  108 (156)
                      +|.+   -+.||.+++|.|+.
T Consensus       137 ~g~p---~~~~k~a~~n~r~~  154 (155)
T 1wym_A          137 SGDP---NWFPKKSKESGPSS  154 (155)
T ss_dssp             CSCS---SSSCCCCCCCCSSC
T ss_pred             CCCC---CCCCcccccCCCCC
Confidence            8744   35689999999974

>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.92  E-value=2.7e-26  Score=175.48  Aligned_cols=75  Identities=20%  Similarity=0.325  Sum_probs=71.7

Q ss_pred             eeecCCCCcccCCC---CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcCCCCCccc
Q 031634           14 AYKYELFAPRKSSR---SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLNVPDFD   89 (156)
Q Consensus        14 ~n~l~Pgsv~Ki~~---~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g~~~P~lg   89 (156)
                      +|+++||+|+||+.   +|+++|||++||+||+.+|||++++|+|+||||++|+++|+.||++|+++|+++| .+|.+|
T Consensus        52 ~N~l~P~~v~ki~~~~~~f~~~eNI~~Fl~a~~~~Gv~~~~lF~~~DL~e~kn~~~V~~cL~aL~~~a~~~g-~~p~~g  129 (136)
T 1wyp_A           52 INKLQPGSVKKINESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTNHTQVQSTLLALASMAKTKG-NKVNVG  129 (136)
T ss_dssp             HHHHSTTSSSCCCCSSCSHHHHHHHHHHHHHHHHHTCCGGGCCCHHHHHSCSCSHHHHHHHHHHHHHHHHHT-CCCCCC
T ss_pred             HHhhCCCCcccccccccchHHHHHHHHHHHHHHHcCCCcccccCchHHhcCCCHHHHHHHHHHHHHHHHHCC-CCCcCc
Confidence            68999999999964   5888999999999999999999999999999999999999999999999999999 899999

>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=99.91  E-value=3.1e-25  Score=173.50  Aligned_cols=105  Identities=28%  Similarity=0.320  Sum_probs=86.1

Q ss_pred             eeecCCCCcccCCC----CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcCCCCCccc
Q 031634           14 AYKYELFAPRKSSR----SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLNVPDFD   89 (156)
Q Consensus        14 ~n~l~Pgsv~Ki~~----~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g~~~P~lg   89 (156)
                      +|+|+||+|+||+.    +|+++|||++||+||+.+|||++++|+|+||||++|+++|+.||++|++.|++.|. +|.++
T Consensus        48 ~N~l~P~~i~kI~~~~~~~f~~~eNI~~FL~a~~~~Gv~~~~lF~~~DL~e~kn~~~Vi~~L~aL~~~~~~~g~-~p~~~  126 (159)
T 1p2x_A           48 VQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQDL-APPLI  126 (159)
T ss_dssp             HHHHCTTSCCCCCCCSSCCTTHHHHHHHHHHHHHHTTCCGGGCCCHHHHSSCSCHHHHHHHHHHHHHHHHTTTS-SCCCC
T ss_pred             HHHhCCCCccccccccCCcchHHHHHHHHHHHHHHcCCCcccccCHHHHHhcCCHHHHHHHHHHHHHHHhhCCC-CCCch
Confidence            68999999999953    69999999999999999999999999999999999999999999999999999986 68776


Q ss_pred             CCCccccCCcchhhhhhhhhhhcccccCCC
Q 031634           90 KVTCTVAMPTDNVGCIRRRLEQSQRRFLSN  119 (156)
Q Consensus        90 ~~~~~v~~pk~~~~~~R~~le~~~~~~~~~  119 (156)
                      .......+..|-...-+..|+..+...+++
T Consensus       127 ~~~~~~~fseeql~~~~~~l~~~g~~~~~f  156 (159)
T 1p2x_A          127 KSDENLSFTDEDVSIIVRRLRQSNVILPNF  156 (159)
T ss_dssp             CCCTTCCCCHHHHHHHHHHHHHCCCCCCCG
T ss_pred             hhhccCCCCHHHHHHHHHHHHHcCCCCCCc
Confidence            544444555555545556676655554443

>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1

Probab=99.90  E-value=3.9e-25  Score=170.51  Aligned_cols=77  Identities=18%  Similarity=0.235  Sum_probs=70.5

Q ss_pred             eeecCC---CCcc-cCCC---CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcC---C
Q 031634           14 AYKYEL---FAPR-KSSR---SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQ---L   83 (156)
Q Consensus        14 ~n~l~P---gsv~-Ki~~---~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g---~   83 (156)
                      +|+|+|   |+|+ ||+.   +|++||||++||+||++||||++++|+|+||||++|+++|+.||++|+++|.+++   +
T Consensus        50 ~N~l~P~~~~~I~~kin~~~~~f~~~eNI~~FL~ac~~~Gv~~~~lF~t~DL~e~kn~~~V~~cL~aL~~~a~~~~~~~~  129 (144)
T 1ujo_A           50 VNSLYPEGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLYEGKDMAAVQRTLMALGSLAVTKNDGNY  129 (144)
T ss_dssp             HHHHSCTTTCCSCCCSSCCCSHHHHHHHHHHHHHHHHHHTCCSSSCCCHHHHHTCSCHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred             HHHhCcccCCCcceeecCCCchhHHHHHHHHHHHHHHHcCcCccccCChhHHHhcCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence            688888   8888 8874   5889999999999999999999999999999999999999999999999999885   6


Q ss_pred             CC-CcccC
Q 031634           84 NV-PDFDK   90 (156)
Q Consensus        84 ~~-P~lg~   90 (156)
                      .+ |.+|+
T Consensus       130 ~g~P~~~~  137 (144)
T 1ujo_A          130 RGDPNWFM  137 (144)
T ss_dssp             SSCSTTTC
T ss_pred             CCCCCCCc
Confidence            77 88883

>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=99.89  E-value=5e-24  Score=172.84  Aligned_cols=106  Identities=27%  Similarity=0.314  Sum_probs=86.8

Q ss_pred             eeecCCCCcccCC----CCCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcCCCCCccc
Q 031634           14 AYKYELFAPRKSS----RSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLNVPDFD   89 (156)
Q Consensus        14 ~n~l~Pgsv~Ki~----~~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g~~~P~lg   89 (156)
                      +|+|+||+|+||+    .+|+++|||++||+||++||||++++|+|+||||++|+++|+.||++|++.|+++|+ +|.++
T Consensus        92 iN~l~P~sv~kI~~~s~~~f~~~eNI~~FL~ac~~~Gvp~~~lF~t~DL~e~kn~~~Vi~~L~aL~~~a~~~g~-~p~l~  170 (203)
T 1p5s_A           92 VQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQDL-APPLI  170 (203)
T ss_dssp             HHHHCTTSCCCCCCCSSSCCCHHHHHHHHHHHHHHTTCCGGGCCCHHHHHSCSCHHHHHHHHHHHHHHHHHTTS-SCCCC
T ss_pred             HHHhCCCCcccccCCCCCcchHHHHHHHHHHHHHHcCCCcccccCHHHHHhcCCHHHHHHHHHHHHHHHhhcCC-CCchh
Confidence            6899999999994    369999999999999999999999999999999999999999999999999999987 47776


Q ss_pred             CCCccccCCcchhhhhhhhhhhcccccCCCC
Q 031634           90 KVTCTVAMPTDNVGCIRRRLEQSQRRFLSNA  120 (156)
Q Consensus        90 ~~~~~v~~pk~~~~~~R~~le~~~~~~~~~~  120 (156)
                      .......+..|....-+..+++.+...++++
T Consensus       171 ~l~~~~~Fseeql~~~n~~l~q~G~~~~~F~  201 (203)
T 1p5s_A          171 KSDENLSFTDEDVSIIVRRLRQSNVILPNFK  201 (203)
T ss_dssp             CCCTTCCCCHHHHHHHHHHHHHCCCCCCCST
T ss_pred             hhcccCCCCHHHHHHHHHHHHHcCCCCCCCC
Confidence            5433344444444345567777776655554

>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}

Probab=99.89  E-value=4.9e-24  Score=171.89  Aligned_cols=95  Identities=19%  Similarity=0.263  Sum_probs=78.9

Q ss_pred             eeecCCCCcc--cC-----------CCCCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHh
Q 031634           14 AYKYELFAPR--KS-----------SRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARS   80 (156)
Q Consensus        14 ~n~l~Pgsv~--Ki-----------~~~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~   80 (156)
                      +|+|+||+|+  ||           ..+|++||||++||+||+++|||+.++|+|+||||++|+++|+.||++||++|.+
T Consensus        84 ~N~l~Pg~vp~kkI~~~~~~~~~~~~~~F~~~eNI~~FL~ac~~~Gvp~~~lFet~DL~e~kn~~~V~~cL~aL~~~a~~  163 (193)
T 3i6x_A           84 GNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNAMDEIGLPKIFYPETTDIYDRKNMPRCIYCIHALSLYLFK  163 (193)
T ss_dssp             HHHHCTTTCCGGGSTTTTCHHHHHSCCCGGGHHHHHHHHHHHHHHTCCGGGCCCHHHHHSCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCCCccccCCcccccccCcccchHHHHHHHHHHHHHHHcCCCcccCCCcHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence            5677777773  55           2479999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcccCCCccccCCcchhhhhhhhh
Q 031634           81 RQLNVPDFDKVTCTVAMPTDNVGCIRRRL  109 (156)
Q Consensus        81 ~g~~~P~lg~~~~~v~~pk~~~~~~R~~l  109 (156)
                      +|+. |.++.+...+.+..+-....+..|
T Consensus       164 ~G~~-P~i~~l~g~~~Ft~eei~~~~~~l  191 (193)
T 3i6x_A          164 LGLA-PQIQDLYGKVDFTEEEINNMKTEL  191 (193)
T ss_dssp             TTSS-CCCCCCTTTCCCCHHHHHHHHHHT
T ss_pred             CCCC-CCcccccCCCCcCHHHHHHHHHHh
Confidence            9986 888876555666555544444444

>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}

Probab=99.89  E-value=8.9e-24  Score=169.46  Aligned_cols=76  Identities=21%  Similarity=0.267  Sum_probs=66.7

Q ss_pred             eeecCCCCc--ccC-----------CCCCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHh
Q 031634           14 AYKYELFAP--RKS-----------SRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARS   80 (156)
Q Consensus        14 ~n~l~Pgsv--~Ki-----------~~~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~   80 (156)
                      +|+|+||+|  +||           ..+|++||||++||+||++||||++++|+|+||||++|+++|+.||++||++|++
T Consensus        62 ~N~l~P~sv~~~kI~~~~~~~~~~~~~~f~~~eNI~~FL~ac~~~Gvp~~~lFet~DL~e~kn~~~Vi~cL~aL~~~a~~  141 (190)
T 2rr8_A           62 GNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNAMDEIGLPKIFYPETTDIYDRKNMPRCIYCIHALSLYLFK  141 (190)
T ss_dssp             HHHSCTTTSCSSCSSTTTCHHHHHTCCCSSTHHHHHHHHHGGGGTTCCSTTCCCHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCcccccccccccccccCCCCcchHHHHHHHHHHHHHHcCCCccccCCHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            466777766  454           3479999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcccC
Q 031634           81 RQLNVPDFDK   90 (156)
Q Consensus        81 ~g~~~P~lg~   90 (156)
                      +|+ +|.++.
T Consensus       142 ~g~-~P~~~~  150 (190)
T 2rr8_A          142 LGL-APQIQD  150 (190)
T ss_dssp             SSC-CCCCCC
T ss_pred             CCC-CCCccc
Confidence            996 566653

>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1

Probab=99.88  E-value=2.7e-24  Score=158.22  Aligned_cols=68  Identities=22%  Similarity=0.373  Sum_probs=64.0

Q ss_pred             eeecCCCCcccCCC---CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhc
Q 031634           14 AYKYELFAPRKSSR---SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSR   81 (156)
Q Consensus        14 ~n~l~Pgsv~Ki~~---~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~   81 (156)
                      +|+++||+|+||+.   +|+++|||++||+||+.+|||+.++|+|+||||++|+++|+.||++||++|.++
T Consensus        38 ~N~l~P~~v~ki~~~~~~f~~~eNI~~Fl~a~~~~Gv~~~~lF~~~DL~e~kn~~~V~~~l~aL~~~a~~k  108 (108)
T 1h67_A           38 INKLQPGSVQKVNDPVQNWHKLENIGNFLRAIKHYGVKPHDIFEANDLFENTNHTQVQSTLIALASQAKTK  108 (108)
T ss_dssp             HHHHSTTSSTTCCCTTSSHHHHHHHHHHHHHHHHHTSCGGGSCCHHHHHHTCCSHHHHHHHHHHHHHHHHC
T ss_pred             HHHhCCCCcccccccccchHHHHHHHHHHHHHHHcCCCcccccChhHHHhCCChHHHHHHHHHHHHHHccC
Confidence            68899999999964   688889999999999999999999999999999999999999999999999864

>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}

Probab=99.83  E-value=5.9e-22  Score=150.24  Aligned_cols=67  Identities=24%  Similarity=0.237  Sum_probs=62.0

Q ss_pred             eeecCCCCcccCCC----CCCCcccHHHHHHHHHH-cCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcCC
Q 031634           14 AYKYELFAPRKSSR----SYMPYSNVDSFLKICKI-LGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQL   83 (156)
Q Consensus        14 ~n~l~Pgsv~Ki~~----~f~~~ENIs~FL~ack~-lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g~   83 (156)
                      +|+++||+|+||+.    +|+++|||++||+||++ +|+   ++|+|+||||++|+++|+.||++||++|++.|.
T Consensus        55 iN~l~Pg~i~kI~~~~~~~f~~~eNI~~FL~a~~~~~g~---~lF~t~DL~e~kn~~~V~~cL~aL~~~~~~~G~  126 (126)
T 2l3g_A           55 LERLLPGTIEKVYPEPRSESECLSNIREFLRGCGASLRL---ETFDANDLYQGQNFNKVLSSLVTLNKVTADIGL  126 (126)
T ss_dssp             HHHHSTTCCSCCCSSCCSHHHHHHHHHHHHHHHHHTSCC---CCCCHHHHHTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHhCCCCCCccCCCCCcchHHHHHHHHHHHHHHHhCCC---CccCHHHHHhCCCHHHHHHHHHHHHHHHHHccC
Confidence            68999999999953    38889999999999999 996   999999999999999999999999999998773

>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.82  E-value=1.3e-21  Score=146.99  Aligned_cols=64  Identities=23%  Similarity=0.286  Sum_probs=59.9

Q ss_pred             eeecCCCCcccCCC----CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHh
Q 031634           14 AYKYELFAPRKSSR----SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARS   80 (156)
Q Consensus        14 ~n~l~Pgsv~Ki~~----~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~   80 (156)
                      +|+++||+|+||+.    .|+++|||++||+||+.+|+   ++|+|+||||++|+++|+.||++|+|+|++
T Consensus        49 ~N~l~Pg~i~ki~~~~~~~f~~~eNI~~FL~a~~~~g~---~~F~~~DL~e~kn~~~V~~cL~aL~~~~~~  116 (121)
T 1wyr_A           49 INRLMPGSVEKFCLDPQTEADCINNINDFLKGCATLQV---EIFDPDDLYSGVNFSKVLSTLLAVNKATES  116 (121)
T ss_dssp             HHHHSTTCCSCCCSSCCSHHHHHHHHHHHHHHHHHHTC---CCCCHHHHHTCSCHHHHHHHHHHHHHHHSC
T ss_pred             HHHhCCCCCCcCCCCCcchHHHHHHHHHHHHHHHHcCC---CccCHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence            68999999999953    38899999999999999997   999999999999999999999999999986

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=99.69  E-value=2.8e-18  Score=154.10  Aligned_cols=71  Identities=24%  Similarity=0.369  Sum_probs=62.6

Q ss_pred             eeecCCCCc--ccCCC-----CCCCcccHHHHHHHH-HHcCCCCCCCCCcCccccccChHHHHHHHHHHHH--HHHhcCC
Q 031634           14 AYKYELFAP--RKSSR-----SYMPYSNVDSFLKIC-KILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSK--KARSRQL   83 (156)
Q Consensus        14 ~n~l~Pgsv--~Ki~~-----~f~~~ENIs~FL~ac-k~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr--~A~~~g~   83 (156)
                      +|+|+||+|  ++|+.     .|++||||++||+|| +++|||+.++|+|+||||++|+++|+.||++||+  .|.+.|.
T Consensus        50 ~n~l~p~~v~~~~~~~~~~~~~f~~~~ni~~Fl~~~~~~~g~~~~~~f~~~Dl~~~~~~~~V~~~l~~l~~~~~~~~~g~  129 (587)
T 3ky9_A           50 LNNLLPHAINLREVNLRPQMSQFLCLKNIRTFLSTCCEKFGLKRSELFEAFDLFDVQDFGKVIYTLSALSWTPIAQNRGI  129 (587)
T ss_dssp             HHHHSTTSSCGGGSCSSCTTBHHHHHHHHHHHHHHHHHTTCCCTTSSCCHHHHHTCSCHHHHHHHHHHHHHSTTTGGGTC
T ss_pred             HHHhCCCCCCccccCCCccccchHHHHHHHHHHHHHHHHcCCCHHHcCCchhhhccCCcchHHHHHHHHhhhhhhhccCC
Confidence            688889998  47753     488999999999999 7899999999999999999999999999999999  4555576


Q ss_pred             C
Q 031634           84 N   84 (156)
Q Consensus        84 ~   84 (156)
                      .
T Consensus       130 ~  130 (587)
T 3ky9_A          130 M  130 (587)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.43  E-value=7.5e-08  Score=71.84  Aligned_cols=65  Identities=15%  Similarity=0.075  Sum_probs=56.6

Q ss_pred             eeecCCCCcccCCC----CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHh
Q 031634           14 AYKYELFAPRKSSR----SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARS   80 (156)
Q Consensus        14 ~n~l~Pgsv~Ki~~----~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~   80 (156)
                      +|.|.|+++++++.    .|+.+|||+.||++++.+|++..++ .+.|++| +|+..|+.+|.+|.|+-+.
T Consensus        57 le~L~~~~l~~~~~~p~~~~~~~eNv~~aL~~~~~~gv~~~~i-~~~DI~d-gn~~~iL~Llw~L~r~~q~  125 (129)
T 2yrn_A           57 IQVVANEKIEDINGCPKNRSQMIENIDACLNFLAAKGINIQGL-SAEEIRN-GNLKAILGLFFSLSRYKQQ  125 (129)
T ss_dssp             HHHHTTCCCTTCCSSCCSTTHHHHHHHHHHHHHHHHTCCCTTC-CHHHHHH-TCHHHHHHHHHHHHHHHSS
T ss_pred             HHHHhcCCcccccCCCCcHHHHHHHHHHHHHHHHHhCCcccCC-Chhhhhc-CCHhHHHHHHHHHHHHHhh
Confidence            46788999988863    5777899999999999999999887 6999997 9999999999999987653

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B

Probab=97.75  E-value=5e-06  Score=73.95  Aligned_cols=50  Identities=14%  Similarity=0.105  Sum_probs=43.9

Q ss_pred             eeecCCCCc--ccCCC-----CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccCh
Q 031634           14 AYKYELFAP--RKSSR-----SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNT   64 (156)
Q Consensus        14 ~n~l~Pgsv--~Ki~~-----~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~   64 (156)
                      +|++.||++  ++++.     .|+++|||+.||++|+.+|++..++ +++||+|+++.
T Consensus        53 in~l~~~~i~~~~in~~~~~~~~~~~eNi~~~L~~~k~~g~~~~~i-~~~Dl~dg~~~  109 (506)
T 1pxy_A           53 INVAVPGTIDERAINTKRVLNPWERNENHTLCLNSAKAVGCSVVNI-GTQDLAEGRPH  109 (506)
T ss_dssp             HHHHSTTSSCGGGSCCCSSCCHHHHHHHHHHHHHHHHHTTCCCTTC-CHHHHHHTCHH
T ss_pred             HHHHcCCCCCccccCccccccHHHHHHHHHHHHHHHHHhCCCcCCC-CHHHHhcCChH
Confidence            578899999  77763     3678899999999999999999998 99999999874

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K

Probab=97.10  E-value=0.0001  Score=60.41  Aligned_cols=64  Identities=11%  Similarity=0.114  Sum_probs=49.5

Q ss_pred             eeecCCCCcccCCC---CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHH
Q 031634           14 AYKYELFAPRKSSR---SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKAR   79 (156)
Q Consensus        14 ~n~l~Pgsv~Ki~~---~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~   79 (156)
                      +|.|.|+.+++++.   .|+++|||+.||++++++||+-.++ ++.|++|+ |...+.--|..|-++-+
T Consensus        64 le~l~~~~v~k~~~~~~~~~~~eNi~~aL~~~k~~gv~lv~I-~~~DIvdG-~~kliLgLlW~li~~~~  130 (254)
T 1wku_A           64 LEVISGERLPRPDKGKMRFHKIANVNKALDFIASKGVKLVSI-GAEEIVDG-NLKMTLGMIWTIILRFA  130 (254)
T ss_dssp             HHHHHCSCCCCCCSCCSHHHHHHHHHHHHHHHHTTTCCCCSC-CHHHHHHC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHhCcCCCCCCCCCccHHHHHHhHHHHHHHHHHcCCCccCC-CHHHHhcc-chHHHHHHHHHHHHHHh
Confidence            46678888887643   4677799999999999999998876 99999987 56666665666655544

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=96.78  E-value=0.00017  Score=64.30  Aligned_cols=65  Identities=11%  Similarity=0.125  Sum_probs=48.3

Q ss_pred             eeecCCCCc--ccCCC--------CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHH
Q 031634           14 AYKYELFAP--RKSSR--------SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKAR   79 (156)
Q Consensus        14 ~n~l~Pgsv--~Ki~~--------~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~   79 (156)
                      +|++.||++  ++++.        .|+++|||+.||++++.+|++...-|++.||+|++. ..++--|..|-++-+
T Consensus        58 ie~l~~~~i~~~~i~~~~~~~~~~~~~~~eNi~~~L~~~k~~g~~~l~~i~~~DI~dg~~-~liLgLiW~li~~~~  132 (513)
T 1rt8_A           58 INDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMGGISITNIGAGDILEGRE-HLILGLVWQIIRRGL  132 (513)
T ss_dssp             HHHHSTTSSCGGGSCCCC---CCCHHHHHHHHHHHHHHHHHHSSCCCSSCCHHHHHTTCH-HHHHHHHHHHHHHHS
T ss_pred             HHHHcCCCcchhhcCCccccCcccHHHHHHHHHHHHHHHHHcCCCccCCcCHHhhhcCCH-HHHHHHHHHHHHHhh
Confidence            577888888  46653        356779999999999999998889999999999763 344444444444443

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1

Probab=96.64  E-value=0.00025  Score=58.38  Aligned_cols=61  Identities=11%  Similarity=0.086  Sum_probs=45.3

Q ss_pred             eeecCCCCcc--cCCC----CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHH
Q 031634           14 AYKYELFAPR--KSSR----SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSK   76 (156)
Q Consensus        14 ~n~l~Pgsv~--Ki~~----~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr   76 (156)
                      +|.+.||+++  +++.    .|+.+|||+.||++++++|++-.++ ++.||+|++ ...++.-|..|-+
T Consensus        70 le~l~~~~v~~~~i~~~~~~~~~~~eNv~~aL~~~k~~g~~l~~I-~~~DIvdg~-~~liLgLlw~li~  136 (275)
T 1aoa_A           70 INLSVPDTIDERAINKKKLTPFIIQENLNLALNSASAIGCHVVNI-GAEDLRAGK-PHLVLGLLWQIIK  136 (275)
T ss_dssp             HHHHSTTSSCGGGSCCSSCCHHHHHHHHHHHHHHHHHTTCCCTTC-CHHHHHTTC-HHHHHHHHHHHHH
T ss_pred             HHHhcCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHcCCcccCC-CHHHHHcCc-HHHHHHHHHHHHH
Confidence            4678899885  6653    3667899999999999999998875 999999975 3344444444444

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A

Probab=96.52  E-value=0.00088  Score=54.32  Aligned_cols=59  Identities=12%  Similarity=0.092  Sum_probs=43.3

Q ss_pred             eecCCCCcccCCC--CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHH
Q 031634           15 YKYELFAPRKSSR--SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLS   75 (156)
Q Consensus        15 n~l~Pgsv~Ki~~--~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLg   75 (156)
                      ++|.|+.+++.++  .|+.+|||+.+|++++++|++-.. +++.|++|+. ...+..-|..|-
T Consensus        55 e~l~~~~~~~~~~~~~~~~~eNv~~aL~~~k~~g~~l~~-I~~~DIvdg~-~~liL~Llw~li  115 (246)
T 1dxx_A           55 EGLTGQKLPKEKGSTRVHALNNVNKALRVLQNNNVDLVN-IGSTDIVDGN-HKLTLGLIWNII  115 (246)
T ss_dssp             HHHHSCCCCCCCCSSHHHHHHHHHHHHHHHHHTTCCCTT-CCHHHHHTTC-HHHHHHHHHHHH
T ss_pred             HHHcCCcCCCCCCccHHHHHHHHHHHHHHHHHcCCcccc-CCHHHhhccc-HHHHHHHHHHHH
Confidence            4566677766543  477889999999999999999887 8999999984 344433333443

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A

Probab=96.43  E-value=0.00087  Score=54.16  Aligned_cols=112  Identities=10%  Similarity=0.038  Sum_probs=67.0

Q ss_pred             eeecCCCCcccCCC--CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcCCCCCcccCC
Q 031634           14 AYKYELFAPRKSSR--SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLNVPDFDKV   91 (156)
Q Consensus        14 ~n~l~Pgsv~Ki~~--~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g~~~P~lg~~   91 (156)
                      ++.|.|+.+++.+.  .|+.+|||+.+|+++++.|++-.++ ++.|++|+. ...++.-|..|-++-+-......  | .
T Consensus        54 le~l~~~~~~~~~~~~~~~~~eNv~~aL~~~k~~g~~l~~I-~~~DIvdg~-~k~iLgLlw~li~~~~i~~i~~~--g-~  128 (245)
T 1sh5_A           54 LEVLSGDSLPREKGRMRFHKLQNVQIALDYLRHRQVKLVNI-RNDDIADGN-PKLTLGLIWTIILHFQISDIQVS--G-Q  128 (245)
T ss_dssp             HHHHHCCCCCCCCCCSHHHHHHHHHHHHHHHHHTTCCCCSC-CHHHHHTTC-HHHHHHHHHHHHHHHTTTTCCCT--T-C
T ss_pred             HHHhcCccccCCCCcchHHHHHhHHHHHHHHHHcCCcccCC-ChHhhhccc-HHHHHHHHHHHHHhhcccccccc--c-c
Confidence            35667777776543  5778899999999999999998887 899999984 45555555666665443222110  1 0


Q ss_pred             CccccCCc-chhhhhhhhhhhc-ccccCCC-CCCCcccchhhh
Q 031634           92 TCTVAMPT-DNVGCIRRRLEQS-QRRFLSN-ANLNSDRVLTAD  131 (156)
Q Consensus        92 ~~~v~~pk-~~~~~~R~~le~~-~~~~~~~-~~~n~~r~~~~~  131 (156)
                      .... -++ .+..+.+..++.- .....+. ++-+.++.+.+.
T Consensus       129 ~~~~-~~~~~LL~W~~~~~~~~~~~~v~nF~~s~~DG~a~~aL  170 (245)
T 1sh5_A          129 SEDM-TAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAI  170 (245)
T ss_dssp             CSSC-CHHHHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHH
T ss_pred             cccC-CHHHHHHHHHHHHhccCCCcccCCccccccchHHHHHH
Confidence            1111 123 3566777776642 1122232 345556666443

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A

Probab=95.89  E-value=0.0023  Score=51.92  Aligned_cols=63  Identities=13%  Similarity=0.072  Sum_probs=45.8

Q ss_pred             eeecCCCCc-ccCCC----CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHH
Q 031634           14 AYKYELFAP-RKSSR----SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKA   78 (156)
Q Consensus        14 ~n~l~Pgsv-~Ki~~----~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A   78 (156)
                      ++.|.|+.+ ++++.    .++.+|||+.+|++++++|++-..+ ++.|++|++ ...+.--|..|-++-
T Consensus        57 le~L~~~~~~~~~n~~~~~~~~~~eNv~~aL~~~k~~g~~lv~I-~~~DIvdG~-~kliLgLlW~li~~~  124 (245)
T 2wa7_A           57 LEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDRESIKLVSI-DSKAIVDGN-LKLILGLVWTLILHY  124 (245)
T ss_dssp             HHHHHTCCCSSCCCSSCCSHHHHHHHHHHHHHHHHHTTCCCCSC-CHHHHHTTC-HHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCchhcCCCCCcHHHHHHHHHHHHHHHHHcCCcccCC-CHHHhhCCC-HHHHHHHHHHHHHHH
Confidence            356778888 67653    2456799999999999999988775 899999985 444444445555443

>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A

Probab=95.77  E-value=0.0035  Score=47.12  Aligned_cols=62  Identities=13%  Similarity=-0.042  Sum_probs=43.6

Q ss_pred             eeecCCCCcc--cCC-C---CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHH
Q 031634           14 AYKYELFAPR--KSS-R---SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKA   78 (156)
Q Consensus        14 ~n~l~Pgsv~--Ki~-~---~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A   78 (156)
                      +|.|.||+|+  |++ .   .|..++||..|.++++++||++.  +....|.-++-. -=..=+.++-+.-
T Consensus        38 md~l~Pg~v~l~KVkf~a~~e~e~~~N~k~lq~af~k~gV~k~--i~v~kLvkgk~q-dnleflqW~k~f~  105 (123)
T 2qjz_A           38 MDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKI--IPVDKLVKGKFQ-DNFEFVQWFKKFF  105 (123)
T ss_dssp             HHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHHTCCCC--CCHHHHTTCCHH-HHHHHHHHHHHHH
T ss_pred             HHHHccCCCcHHHhccCCCChHHHHHHHHHHHHHHHHcCCCCc--cCHHHHHcCCch-hHHHHHHHHHHHH
Confidence            4789999998  886 3   46677999999999999999964  555556666532 2234455554444

>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.34  E-value=0.0079  Score=47.14  Aligned_cols=63  Identities=14%  Similarity=0.002  Sum_probs=45.7

Q ss_pred             eeecCCCCcc--cCC-C---CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHH
Q 031634           14 AYKYELFAPR--KSS-R---SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKAR   79 (156)
Q Consensus        14 ~n~l~Pgsv~--Ki~-~---~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~   79 (156)
                      +|.|.||+|+  |++ .   .|..++||..|.++++++||++.  +....|.-++-... ..=|.++-+.-.
T Consensus        55 md~L~PgsV~l~KVkf~a~~e~e~~~N~k~lQ~af~k~gV~k~--ipV~kLvkgk~qdN-lEFlqWfk~f~d  123 (159)
T 1wyo_A           55 MDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKI--IPVEKLVKGKFQDN-FEFIQWFKKFFD  123 (159)
T ss_dssp             HHHHSTTSSCTTSCCTTCCSSHHHHHHHHHHHHHHHHHTCCCC--CCHHHHTTTCSHHH-HHHHHHHHHHHH
T ss_pred             HHHHccCCCcHhhhccCCCChHHHHHHHHHHHHHHHHcCCCCc--cCHHHHhcCCchhH-HHHHHHHHHHHH
Confidence            4789999998  886 3   56677999999999999999974  66666666664332 344555555443

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=95.21  E-value=0.008  Score=53.50  Aligned_cols=113  Identities=10%  Similarity=0.107  Sum_probs=65.6

Q ss_pred             eecCCCCc--ccCCC---------CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcCC
Q 031634           15 YKYELFAP--RKSSR---------SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQL   83 (156)
Q Consensus        15 n~l~Pgsv--~Ki~~---------~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g~   83 (156)
                      +++.||++  ++++.         .|+.+|||+.+|++++++|++-.. +++.|+++++ ...+.--|..|-|+-...-+
T Consensus       321 e~l~~g~v~~~~~~~~p~~~~~~~r~~~~eNv~~al~~~~~~gv~lv~-i~~~DIvdg~-~~~~LgLlW~li~~~~~~~l  398 (513)
T 1rt8_A          321 DKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQGFSLVG-IQGADITDGS-RTLTLALVWQMMRMNITKTL  398 (513)
T ss_dssp             HHHSTTCCCGGGSCCCCTTSCCCCHHHHHHHHHHHHHHHHHTTCCCTT-CCHHHHHTTC-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCCCcchhhhcCCcccccccchHHHHHHHHHHHHHHHHcCceeec-cchhhhhcCC-chhhHHHHHHHHHHHHHHHH
Confidence            45778876  45542         266779999999999999998877 9999999975 44444444445443321100


Q ss_pred             CCCcccCCCccccCCcchhhhhhhhhhhcc--cccCCCC--CCCcccchhhhh
Q 031634           84 NVPDFDKVTCTVAMPTDNVGCIRRRLEQSQ--RRFLSNA--NLNSDRVLTADL  132 (156)
Q Consensus        84 ~~P~lg~~~~~v~~pk~~~~~~R~~le~~~--~~~~~~~--~~n~~r~~~~~~  132 (156)
                      .  .+..-.. -..++++..+.++.++...  ....+.+  +-+.++.+.+.+
T Consensus       399 ~--~l~~~~~-~~~~~~LL~W~~~~~~~~~~~~~i~nF~~~s~~dG~a~~aLi  448 (513)
T 1rt8_A          399 H--SLSRGGK-TLSDSDMVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVL  448 (513)
T ss_dssp             T--C-------CCCHHHHHHHHHHHHTTTCSSCCCSSTTCGGGGGSHHHHHHH
T ss_pred             H--hhccCCC-cCCHHHHHHHHHHHhhccCCCCCCCCCCcccccchHHHHHHH
Confidence            0  1110000 1124567777787776432  2233443  456666664433

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}

Probab=92.79  E-value=0.035  Score=46.82  Aligned_cols=65  Identities=9%  Similarity=0.022  Sum_probs=49.4

Q ss_pred             eeecCCCCcccCCC--CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHh
Q 031634           14 AYKYELFAPRKSSR--SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARS   80 (156)
Q Consensus        14 ~n~l~Pgsv~Ki~~--~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~   80 (156)
                      ++.|.|+.+++.+.  .|+.+|||+.+|++++..|++-.. ....|++++ |...++--|..|-++-+-
T Consensus       110 le~L~~~~l~~~~~~~r~~kleNvn~aL~~lk~~gv~lv~-I~~~DIvdG-n~kliLgLlW~Li~~~~i  176 (296)
T 3f7p_A          110 LEVLSGDSLPREKGRMRFHKLQNVQIALDYLRHRQVKLVN-IRNDDIADG-NPKLTLGLIWTIILHFQI  176 (296)
T ss_dssp             HHHHHCCCCCCCCCSSHHHHHHHHHHHHHHHHHTTCCCTT-CCHHHHHTT-CHHHHHHHHHHHHHHHTT
T ss_pred             HHHhcCCcccccCCcChhhhhhhHHHHHHHHHHhCccccC-CChhhhhcc-chHHHHHHHHHhhcccce
Confidence            35677777776543  467779999999999999987654 467899998 777777777777776543

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=87.25  E-value=0.23  Score=45.63  Aligned_cols=60  Identities=17%  Similarity=0.117  Sum_probs=43.3

Q ss_pred             eeecCCCCcccCCC---CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHH
Q 031634           14 AYKYELFAPRKSSR---SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLS   75 (156)
Q Consensus        14 ~n~l~Pgsv~Ki~~---~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLg   75 (156)
                      ++.|.|+.+++++.   .++.+|||+.+|++++..|++-.. -.+.|++++ |...+.--|..|-
T Consensus        45 ~e~l~~~~~~~~~~~~~~~~~~eN~~~~l~~~~~~g~~~~~-i~~~di~~g-~~~~~l~l~w~l~  107 (863)
T 1sjj_A           45 LEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVS-IGAEEIVDG-NVKMTLGMIWTII  107 (863)
T ss_dssp             HHHTSCCCCCCSCCCSSHHHHHHHHHHHHHHHHHTTCCCTT-CCSHHHHTT-CHHHHHHHHHHHH
T ss_pred             HHHhCCCceeCCCCCccHHHHHHHHHHHHHHHHHcCCccCC-CChHHhhcC-CHHHHHHHHHHHH
Confidence            45678888887653   366679999999999999997654 567888888 4555444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	156
d1h67a_	108	a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [T	3e-14
d1ujoa_	144	a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [Ta	1e-13
d1p2xa_	159	a.40.1.1 (A:) Ras GTPase-activating-like protein r	3e-09

>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 108

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Calponin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 62.6 bits (152), Expect = 3e-14
 Identities = 13/59 (22%), Positives = 31/59 (52%)

Query: 23  RKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSR 81
               +++    N+ +FL+  K  G+   D+F  +D+ E  N  +V   + +L+ +A+++
Sbjct: 50  NDPVQNWHKLENIGNFLRAIKHYGVKPHDIFEANDLFENTNHTQVQSTLIALASQAKTK 108

>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]} Length = 144

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Transgelin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.9 bits (150), Expect = 1e-13
 Identities = 14/63 (22%), Positives = 24/63 (38%)

Query: 20  FAPRKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKAR 79
                 S  +     V  FLK  +  G+   D+F   D+ E K+   V   + +L   A 
Sbjct: 63  VPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLYEGKDMAAVQRTLMALGSLAV 122

Query: 80  SRQ 82
           ++ 
Sbjct: 123 TKN 125

>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 159

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Ras GTPase-activating-like protein rng2
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 50.8 bits (121), Expect = 3e-09
 Identities = 19/69 (27%), Positives = 28/69 (40%)

Query: 23  RKSSRSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQ 82
             +   +    N++ FL     +GL  I  F  +D+ E KN  KV  CI +LS     + 
Sbjct: 61  YSNELQFRHSDNINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQD 120

Query: 83  LNVPDFDKV 91
           L  P     
Sbjct: 121 LAPPLIKSD 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	156
d1h67a_	108	Calponin {Chicken (Gallus gallus) [TaxId: 9031]}	99.89
d1ujoa_	144	Transgelin {Mouse (Mus musculus) [TaxId: 10090]}	99.86
d1p2xa_	159	Ras GTPase-activating-like protein rng2 {Fission y	99.85
d1aoaa1	131	Fimbrin (Plastin), actin-crosslinking domain {Huma	93.77
d1sh5a1	120	Actin binding domain of plectin {Human (Homo sapie	89.58
d1aoaa2	116	Fimbrin (Plastin), actin-crosslinking domain {Huma	80.03

>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Calponin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.89  E-value=4.9e-25  Score=161.60  Aligned_cols=68  Identities=22%  Similarity=0.373  Sum_probs=64.2

Q ss_pred             eeecCCCCcccCCC---CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhc
Q 031634           14 AYKYELFAPRKSSR---SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSR   81 (156)
Q Consensus        14 ~n~l~Pgsv~Ki~~---~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~   81 (156)
                      +|.|+||+|+|++.   +|+++|||++||+||+.+|||+.++|+|+||||++|+++|+.||++|||.|+++
T Consensus        38 ~N~l~pg~i~ki~~~~~~f~~~eNI~~FL~~~~~~Gv~~~~lF~~~DL~e~kn~~~V~~cL~aL~r~a~~k  108 (108)
T d1h67a_          38 INKLQPGSVQKVNDPVQNWHKLENIGNFLRAIKHYGVKPHDIFEANDLFENTNHTQVQSTLIALASQAKTK  108 (108)
T ss_dssp             HHHHSTTSSTTCCCTTSSHHHHHHHHHHHHHHHHHTSCGGGSCCHHHHHHTCCSHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhcCCCccCCCcchhHHHHHHHHHHHHHHHhCCCcccCCChHHHHhCCCHHHHHHHHHHHHHHhccC
Confidence            68999999999965   588889999999999999999999999999999999999999999999999875

>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Transgelin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=5.2e-23  Score=157.42  Aligned_cols=69  Identities=19%  Similarity=0.236  Sum_probs=63.5

Q ss_pred             eeecCCCCcccCC-------CCCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcC
Q 031634           14 AYKYELFAPRKSS-------RSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQ   82 (156)
Q Consensus        14 ~n~l~Pgsv~Ki~-------~~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g   82 (156)
                      +|+|+||+|+++.       ..|++||||++||+||+.+||++.++|+|+||||++|++||+.||++|||.|++++
T Consensus        50 ~N~l~P~~i~~~~~~~~~~~~~f~~~eNI~~FL~~c~~~Gv~~~~lF~~~DL~e~kn~~~Vi~cL~~L~r~a~~~~  125 (144)
T d1ujoa_          50 VNSLYPEGSKPVKVPENPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLYEGKDMAAVQRTLMALGSLAVTKN  125 (144)
T ss_dssp             HHHHSCTTTCCSCCCSSCCCSHHHHHHHHHHHHHHHHHHTCCSSSCCCHHHHHTCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHcCCCCCCccccCCCcchhHHHHHHHHHHHHHHHHhCCCcccccchhHHhhcCCHHHHHHHHHHHHHHHHHcc
Confidence            6889999998762       24888899999999999999999999999999999999999999999999999874

>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Ras GTPase-activating-like protein rng2
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.85  E-value=2.5e-22  Score=154.07  Aligned_cols=107  Identities=26%  Similarity=0.298  Sum_probs=85.6

Q ss_pred             eeecCCCCcccCCC----CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHhcCCCCCccc
Q 031634           14 AYKYELFAPRKSSR----SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARSRQLNVPDFD   89 (156)
Q Consensus        14 ~n~l~Pgsv~Ki~~----~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~~g~~~P~lg   89 (156)
                      +|+|.||++++++.    .|+++|||+.||++|+++||++.++|+|+||||++|+++|+.||++|||+|++.|+.+|.++
T Consensus        48 ~n~l~p~~i~~~~~~~~~~~~~~eNi~~fL~~~~~~gv~~~~~f~~~DL~e~~n~~~V~~~l~~l~~~~~~~~~~~p~~~  127 (159)
T d1p2xa_          48 VQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHALSYFLSMQDLAPPLIK  127 (159)
T ss_dssp             HHHHCTTSCCCCCCCSSCCTTHHHHHHHHHHHHHHTTCCGGGCCCHHHHSSCSCHHHHHHHHHHHHHHHHTTTSSCCCCC
T ss_pred             HHHHCCCCCceecCCCcchHHHHHHHHHHHHHHHHcCCCccccCchHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCccC
Confidence            57889999988742    68889999999999999999999999999999999999999999999999999999888887


Q ss_pred             CCCccccCCcchhhhhhhhhhhcccccCCCCC
Q 031634           90 KVTCTVAMPTDNVGCIRRRLEQSQRRFLSNAN  121 (156)
Q Consensus        90 ~~~~~v~~pk~~~~~~R~~le~~~~~~~~~~~  121 (156)
                      ... ......+...+..+.+++.+...++.++
T Consensus       128 ~~~-k~~f~ee~L~~~~~~l~~~g~~~pnfs~  158 (159)
T d1p2xa_         128 SDE-NLSFTDEDVSIIVRRLRQSNVILPNFKA  158 (159)
T ss_dssp             CCT-TCCCCHHHHHHHHHHHHHCCCCCCCGGG
T ss_pred             ccc-cCCCCHHHHHHHHHHHHHcCCCCCCcCC
Confidence            433 2223334444556667766555455443

>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.031  Score=39.56  Aligned_cols=64  Identities=9%  Similarity=0.058  Sum_probs=47.0

Q ss_pred             eeecCCCCccc--CCC----CCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHH
Q 031634           14 AYKYELFAPRK--SSR----SYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKAR   79 (156)
Q Consensus        14 ~n~l~Pgsv~K--i~~----~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~   79 (156)
                      ++.+.|+++.+  ++.    .+...+|++.+|++|++.|+.-.++ .+.|++++ |...+..-+..|-|+-.
T Consensus        50 le~l~~~~i~~~~~~~~p~~~~~~~~N~~~~L~~~k~~gi~l~~i-~~~DIvdG-~~k~iL~Lvw~li~~~~  119 (131)
T d1aoaa1          50 INLSVPDTIDERAINKKKLTPFIIQENLNLALNSASAIGCHVVNI-GAEDLRAG-KPHLVLGLLWQIIKIGL  119 (131)
T ss_dssp             HHHHSTTSSCGGGSCCSSCCHHHHHHHHHHHHHHHHHTTCCCTTC-CHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCcchhccCCCcCHHHHHHHHHHHHHHHHHhccccCCC-ChhhhhcC-CHHHHHHHHHHHHHHHH
Confidence            45678888854  222    2445599999999999999987775 89999987 66777666666655543

>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.58  E-value=0.057  Score=37.28  Aligned_cols=63  Identities=10%  Similarity=0.049  Sum_probs=45.9

Q ss_pred             ecCCCCcccCC--CCCCCcccHHHHHHHHHHcCCCCCCCCCcCccccccChHHHHHHHHHHHHHHHh
Q 031634           16 KYELFAPRKSS--RSYMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKKNTRKVCMCIRSLSKKARS   80 (156)
Q Consensus        16 ~l~Pgsv~Ki~--~~f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~kN~~qVv~cL~aLgr~A~~   80 (156)
                      .+.|+.+++-+  ..+...||++..|++++..|+.-... .+.|++++ |...+...|.+|-++-+-
T Consensus        49 ~l~~~~~~~~~~~~~~~k~eN~~~aL~~~~~~~~~l~~i-~~~dI~~G-n~k~iL~llw~L~~~~~i  113 (120)
T d1sh5a1          49 VLSGDSLPREKGRMRFHKLQNVQIALDYLRHRQVKLVNI-RNDDIADG-NPKLTLGLIWTIILHFQI  113 (120)
T ss_dssp             HHHCCCCCCCCCCSHHHHHHHHHHHHHHHHHTTCCCCSC-CHHHHHTT-CHHHHHHHHHHHHHHHTT
T ss_pred             HhCCCccccCCCCCHHHHHHHHHHHHHHHHHhcccccCC-cHHhhccC-cHHHHHHHHHHHHHHhch
Confidence            34444444322  23445599999999999999976664 88899988 788888888888876553

>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.03  E-value=0.52  Score=31.50  Aligned_cols=32  Identities=25%  Similarity=0.371  Sum_probs=25.6

Q ss_pred             CCCcccHHHHHHHHHHcCCCCCCCCCcCcccccc
Q 031634           29 YMPYSNVDSFLKICKILGLTGIDLFSPSDVVEKK   62 (156)
Q Consensus        29 f~~~ENIs~FL~ack~lGV~~~dLFqT~DLyE~k   62 (156)
                      ....+|...++++++.+|++.  .-.+.|++++.
T Consensus        72 ~~~~~n~~~~l~~~~~lgi~~--~i~~eDIv~gn  103 (116)
T d1aoaa2          72 TDDLKRAESMLQQADKLGCRQ--FVTPADVVSGN  103 (116)
T ss_dssp             SSHHHHHHHHHHHHTTTTCCC--SCCHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhCCCc--CcCHHhCcCCC
Confidence            344488999999999999975  47899999843