Citrus Sinensis ID: 031643

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------

MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI

cHHHHHHHHcccccccEEEEcccccccccccccccccEEEEEEcccEEEEEEEEccccEEEEEEcccccEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccEEEEEEcccccccccHHHHHHHHHHHHHcc

cHHHHHHHHccccccEEEEEcccEEEEccccEcccccEEEEEEEcccEEEEEEEccccEEEEEEEccccEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccEEEEEEcccccccccccHHHHHHHHHHHcc

mrnkvsemsgrdaEVVRVVVspyricplgahidhqggtvsAMTINKGIllgfvpsgdtEVVLRsgqfdgevrfsideiqqprnsvkkhhvvhasdsakikeeckwgnyARGALYALQSRGNNLTQGIIGYIcgsdnldssglsssaavsmsfpfni

mrnkvsemsgrdaevVRVVVSPYRICPLGahidhqggtVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDeiqqprnsvkkhhvvhasdsakikeecKWGNYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGlsssaavsmsfpfni

MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICgsdnldssglsssaavsmsFPFNI

*************EVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEI**********HVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGS**********************

*RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHAS**AKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI

************AEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQP***************AKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI

MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQ*********************ECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI

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MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		156	2.2.26 [Sep-21-2011]
Q8VYG2		424	Galacturonokinase OS=Arab	yes	no	0.846	0.311	0.666	2e-45
B2GEP6		388	Galactokinase OS=Lactobac	yes	no	0.730	0.293	0.318	7e-07
B2G9P6		392	Galactokinase OS=Lactobac	yes	no	0.737	0.293	0.333	9e-07
A5VME2		392	Galactokinase OS=Lactobac	yes	no	0.737	0.293	0.333	9e-07
A5UZX0		391	Galactokinase OS=Roseifle	yes	no	0.75	0.299	0.269	1e-06
Q9KDV4		395	Galactokinase OS=Bacillus	yes	no	0.769	0.303	0.290	2e-06
Q8R8R7		390	Galactokinase OS=Thermoan	yes	no	0.801	0.320	0.260	2e-06
Q00052		388	Galactokinase OS=Lactobac	yes	no	0.621	0.25	0.295	6e-06
P39574		390	Galactokinase OS=Bacillus	yes	no	0.769	0.307	0.271	2e-05
Q0ST92		387	Galactokinase OS=Clostrid	yes	no	0.717	0.289	0.308	2e-05

>sp\|Q8VYG2\|GALAK_ARATH Galacturonokinase OS=Arabidopsis thaliana GN=GALAK PE=1 SV=1	Back alignment and function desciption

 Score =  181 bits (458), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/135 (66%), Positives = 104/135 (77%), Gaps = 3/135 (2%)

Query: 1   MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
           ++  V++MSGRD   VRVVV+PYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDT+V
Sbjct: 12  IKEAVAQMSGRDKGEVRVVVAPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTQV 71

Query: 61  VLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRG 120
            LRS QF+GEV F +DEIQ P     K+    AS  +  KE+  WG YARGA+YALQS  
Sbjct: 72  QLRSAQFEGEVCFRVDEIQHPIGLANKN---GASTPSPSKEKSIWGTYARGAVYALQSSK 128

Query: 121 NNLTQGIIGYICGSD 135
            NL QGIIGY+ GS+
Sbjct: 129 KNLKQGIIGYLSGSN 143

Sugar-1-kinase with a strict substrate specificity for the alpha-anomeric configuration of D-galacturonic acid (D-GalA) and ATP. Involved in the biosynthesis of UDP-galacturonic acid (UDP-GalA) from the salvaged GalA that is released during growth-dependent cell wall restructuring.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 4EC: 4

>sp\|B2GEP6\|GAL1_LACF3 Galactokinase OS=Lactobacillus fermentum (strain NBRC 3956 / LMG 18251) GN=galK PE=3 SV=1	Back alignment and function description

>sp\|B2G9P6\|GAL1_LACRJ Galactokinase OS=Lactobacillus reuteri (strain JCM 1112) GN=galK PE=3 SV=1	Back alignment and function description

>sp\|A5VME2\|GAL1_LACRD Galactokinase OS=Lactobacillus reuteri (strain DSM 20016) GN=galK PE=3 SV=1	Back alignment and function description

>sp\|A5UZX0\|GAL1_ROSS1 Galactokinase OS=Roseiflexus sp. (strain RS-1) GN=galK PE=3 SV=1	Back alignment and function description

>sp\|Q9KDV4\|GAL1_BACHD Galactokinase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=galK PE=3 SV=1	Back alignment and function description

>sp\|Q8R8R7\|GAL1_THETN Galactokinase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=galK PE=3 SV=1	Back alignment and function description

>sp\|Q00052\|GAL1_LACHE Galactokinase OS=Lactobacillus helveticus GN=galK PE=3 SV=1	Back alignment and function description

>sp\|P39574\|GAL1_BACSU Galactokinase OS=Bacillus subtilis (strain 168) GN=galK PE=3 SV=1	Back alignment and function description

>sp\|Q0ST92\|GAL1_CLOPS Galactokinase OS=Clostridium perfringens (strain SM101 / Type A) GN=galK PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		156
372995399		431	GALK [Morus alba var. multicaulis]	0.967	0.350	0.708	5e-57
255546650		431	galactokinase, putative [Ricinus communi	0.967	0.350	0.673	2e-51
225462522		436	PREDICTED: galacturonokinase [Vitis vini	0.865	0.309	0.688	7e-50
356513221		431	PREDICTED: galacturonokinase-like [Glyci	0.820	0.296	0.676	1e-48
224090463		413	predicted protein [Populus trichocarpa]	0.858	0.324	0.624	5e-48
357520679		308	Galactokinase [Medicago truncatula] gi\|3	0.974	0.493	0.671	1e-45
357520677		437	Galactokinase [Medicago truncatula] gi\|3	0.974	0.347	0.671	1e-45
356527722		933	PREDICTED: uncharacterized protein LOC10	0.826	0.138	0.622	5e-44
22330971		424	galactokinase [Arabidopsis thaliana] gi\|	0.846	0.311	0.666	1e-43
297833852		424	GHMP kinase family protein [Arabidopsis	0.846	0.311	0.651	2e-43

>gi\|372995399\|gb\|AEY11272.1\| GALK [Morus alba var. multicaulis]	Back alignment and taxonomy information

 Score =  225 bits (573), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 107/151 (70%), Positives = 129/151 (85%)

Query: 1   MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
           +R  VS+M+GR  E VRVV SPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGD++V
Sbjct: 15  VREIVSKMAGRGTEEVRVVASPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDSQV 74

Query: 61  VLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRG 120
           VLRSGQF GEVRFS+DE Q   ++   ++ + A+DS+KI++EC WGNY RGALYALQ +G
Sbjct: 75  VLRSGQFKGEVRFSVDEAQDSGHANAMNNKIDANDSSKIRDECNWGNYPRGALYALQRKG 134

Query: 121 NNLTQGIIGYICGSDNLDSSGLSSSAAVSMS 151
           N+L+QG+IGYICGS+ LD SGLSSSAAV ++
Sbjct: 135 NHLSQGLIGYICGSEGLDCSGLSSSAAVGVA 165

Source: Morus alba var. multicaulis

Species: Morus alba

Genus: Morus

Family: Moraceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255546650\|ref\|XP_002514384.1\| galactokinase, putative [Ricinus communis] gi\|223546481\|gb\|EEF47980.1\| galactokinase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225462522\|ref\|XP_002264528.1\| PREDICTED: galacturonokinase [Vitis vinifera] gi\|296090474\|emb\|CBI40670.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356513221\|ref\|XP_003525312.1\| PREDICTED: galacturonokinase-like [Glycine max]	Back alignment and taxonomy information

>gi\|224090463\|ref\|XP_002308990.1\| predicted protein [Populus trichocarpa] gi\|222854966\|gb\|EEE92513.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|357520679\|ref\|XP_003630628.1\| Galactokinase [Medicago truncatula] gi\|355524650\|gb\|AET05104.1\| Galactokinase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357520677\|ref\|XP_003630627.1\| Galactokinase [Medicago truncatula] gi\|355524649\|gb\|AET05103.1\| Galactokinase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356527722\|ref\|XP_003532457.1\| PREDICTED: uncharacterized protein LOC100793652 [Glycine max]	Back alignment and taxonomy information

>gi|22330971|ref|NP_187681.2| galactokinase [Arabidopsis thaliana] gi|75304441|sp|Q8VYG2.1|GALAK_ARATH RecName: Full=Galacturonokinase; AltName: Full=D-galacturonic acid-1-P kinase gi|18175773|gb|AAL59925.1| putative galactokinase [Arabidopsis thaliana] gi|20465755|gb|AAM20366.1| putative galactokinase [Arabidopsis thaliana] gi|215276406|gb|ACJ65066.1| D-galacturonic acid-1-P kinase [Arabidopsis thaliana] gi|332641423|gb|AEE74944.1| galactokinase [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297833852\|ref\|XP_002884808.1\| GHMP kinase family protein [Arabidopsis lyrata subsp. lyrata] gi\|297330648\|gb\|EFH61067.1\| GHMP kinase family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		156
TAIR\|locus:2075730		424	GalAK "galacturonic acid kinas	0.820	0.301	0.671	7.5e-41

TAIR\|locus:2075730 GalAK "galacturonic acid kinase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 88/131 (67%), Positives = 101/131 (77%)

Query:     1 MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
             ++  V++MSGRD   VRVVV+PYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDT+V
Sbjct:    12 IKEAVAQMSGRDKGEVRVVVAPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTQV 71

Query:    61 VLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRG 120
              LRS QF+GEV F +DEIQ P     K+    AS  +  KE+  WG YARGA+YALQS  
Sbjct:    72 QLRSAQFEGEVCFRVDEIQHPIGLANKNG---ASTPSPSKEKSIWGTYARGAVYALQSSK 128

Query:   121 NNLTQGIIGYI 131
              NL QGIIGY+
Sbjct:   129 KNLKQGIIGYL 139


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.410    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      156       137   0.00091  102 3  11 22  0.42    31
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  581 (62 KB)
  Total size of DFA:  131 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.40u 0.11s 13.51t   Elapsed:  00:00:01
  Total cpu time:  13.40u 0.11s 13.51t   Elapsed:  00:00:01
  Start:  Thu May  9 17:18:20 2013   End:  Thu May  9 17:18:21 2013

GO:0004335 "galactokinase activity" evidence=IEA;ISS;IDA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006012 "galactose metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0046835 "carbohydrate phosphorylation" evidence=IEA;IDA

GO:0046396 "D-galacturonate metabolic process" evidence=IDA

GO:0047912 "galacturonokinase activity" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.VI.1302.1	galactokinase (EC-2.7.1.6) (413 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00061661	galactose-1-phosphate uridylyltransferase (EC-2.7.7.10) (348 aa)	•		•	•		0.931
	fgenesh4_pg.C_LG_I000259	hypothetical protein (1110 aa)			•	•		0.905
	estExt_fgenesh4_pm.C_LG_III0678	hypothetical protein (1114 aa)			•	•		0.905
	gw1.XIX.1583.1	alpha-galactosidase (380 aa)			•			0.899
	gw1.X.3030.1	alpha-galactosidase (EC-2.4.1.67) (369 aa)			•			0.899
	gw1.44.267.1	hypothetical protein (643 aa)			•			0.899
	fgenesh4_pm.C_LG_IV000085	hypothetical protein (379 aa)			•			0.899
	fgenesh4_pg.C_scaffold_164000005	alpha-galactosidase (EC-3.2.1.22) (367 aa)			•			0.899
	eugene3.00101110	alpha-galactosidase (EC-3.2.1.22) (386 aa)			•			0.899
	estExt_fgenesh4_pg.C_LG_VIII0903	SubName- Full=Putative uncharacterized protein; (496 aa)		•	•		•	0.842

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		156
PLN02865		423	PLN02865, PLN02865, galactokinase	6e-79
COG0153		390	COG0153, GalK, Galactokinase [Carbohydrate transpo	1e-12
PRK05322		387	PRK05322, PRK05322, galactokinase; Provisional	2e-12
TIGR00131		386	TIGR00131, gal_kin, galactokinase	7e-10
PRK03817		351	PRK03817, PRK03817, galactokinase; Provisional	3e-08
PRK05101		382	PRK05101, PRK05101, galactokinase; Provisional	6e-06
PRK00555		363	PRK00555, PRK00555, galactokinase; Provisional	1e-04

>gnl\|CDD\|215466 PLN02865, PLN02865, galactokinase	Back alignment and domain information

 Score =  239 bits (612), Expect = 6e-79
 Identities = 104/152 (68%), Positives = 122/152 (80%), Gaps = 10/152 (6%)

Query: 1   MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
           +R +V+ MSGR++  VRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGD EV
Sbjct: 15  IRERVAAMSGRNSGEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDPEV 74

Query: 61  VLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRG 120
           +LRS QF+GEVRF +DEIQ P            + S+  KEE  WG+YARGA+YALQSRG
Sbjct: 75  LLRSAQFEGEVRFRVDEIQHPIA----------NVSSDSKEESNWGDYARGAVYALQSRG 124

Query: 121 NNLTQGIIGYICGSDNLDSSGLSSSAAVSMSF 152
           + L+QGI GYI GS+ LDSSGLSSSAAV +++
Sbjct: 125 HALSQGITGYISGSEGLDSSGLSSSAAVGVAY 156

Length = 423

>gnl\|CDD\|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|235407 PRK05322, PRK05322, galactokinase; Provisional	Back alignment and domain information

>gnl\|CDD\|232841 TIGR00131, gal_kin, galactokinase	Back alignment and domain information

>gnl\|CDD\|235163 PRK03817, PRK03817, galactokinase; Provisional	Back alignment and domain information

>gnl\|CDD\|179937 PRK05101, PRK05101, galactokinase; Provisional	Back alignment and domain information

>gnl\|CDD\|179063 PRK00555, PRK00555, galactokinase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		156
PLN02865		423	galactokinase	100.0
COG0153		390	GalK Galactokinase [Carbohydrate transport and met	100.0
PRK05322		387	galactokinase; Provisional	100.0
PTZ00290		468	galactokinase; Provisional	100.0
PLN02521		497	galactokinase	100.0
PRK05101		382	galactokinase; Provisional	99.98
TIGR00131		386	gal_kin galactokinase. The galactokinases found by	99.98
PRK00555		363	galactokinase; Provisional	99.97
PRK03817		351	galactokinase; Provisional	99.93
TIGR00549		273	mevalon_kin mevalonate kinase. Paracoccus exhibits	99.92
KOG0631		489	consensus Galactokinase [Carbohydrate transport an	99.92
KOG1511		397	consensus Mevalonate kinase MVK/ERG12 [Lipid trans	99.91
PRK13412		974	fkp bifunctional fucokinase/L-fucose-1-P-guanylylt	99.9
TIGR01220		358	Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-typ	99.9
PLN02677		387	mevalonate kinase	99.9
PF10509		52	GalKase_gal_bdg: Galactokinase galactose-binding s	99.9
COG1577		307	ERG12 Mevalonate kinase [Lipid metabolism]	99.83
PRK03926		302	mevalonate kinase; Provisional	99.83
PTZ00298		328	mevalonate kinase; Provisional	99.66
TIGR00154		293	ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kin	99.65
PRK00128		286	ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin	99.63
COG2605		333	Predicted kinase related to galactokinase and meva	99.61
PRK02534		312	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.59
PRK00343		271	ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin	99.29
TIGR01219		454	Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type,	99.12
PRK14611		275	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.03
PRK03188		300	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	98.79
PRK14608		290	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	98.79
PRK14609		269	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	98.76
PRK14616		287	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	98.76
PRK01123		282	shikimate kinase; Provisional	98.73
PRK14612		276	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	98.72
TIGR01920		261	Shik_kin_archae shikimate kinase. This model repre	98.64
PRK14615		296	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	98.59
PRK14614		280	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	98.58
PLN02451		370	homoserine kinase	98.56
PRK14610		283	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	98.47
PF00288		67	GHMP_kinases_N: GHMP kinases N terminal domain; In	98.45
TIGR00144		324	beta_RFAP_syn beta-RFAP synthase. This protein fam	98.35
TIGR00191		302	thrB homoserine kinase. P.aeruginosa homoserine ki	98.33
PRK14613		297	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	98.31
PRK00650		288	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	98.28
COG1685		278	Archaeal shikimate kinase [Amino acid transport an	98.26
PRK04181		257	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	98.21
PTZ00299		336	homoserine kinase; Provisional	98.12
COG0083		299	ThrB Homoserine kinase [Amino acid transport and m	98.07
PRK01212		301	homoserine kinase; Provisional	98.0
PRK05905		258	hypothetical protein; Provisional	97.76
TIGR01240		305	mevDPdecarb diphosphomevalonate decarboxylase. Alt	97.68
KOG4644		948	consensus L-fucose kinase [Carbohydrate transport	97.21
COG1947		289	IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-p	97.01
PLN02407		343	diphosphomevalonate decarboxylase	96.96
KOG4519		459	consensus Phosphomevalonate kinase [Lipid transpor	96.92
COG3890		337	ERG8 Phosphomevalonate kinase [Lipid metabolism]	96.92
COG3407		329	MVD1 Mevalonate pyrophosphate decarboxylase [Lipid	96.61
COG4542		293	PduX Protein involved in propanediol utilization,	94.13
COG1829		283	Predicted archaeal kinase (sugar kinase superfamil	93.62
KOG2833		395	consensus Mevalonate pyrophosphate decarboxylase [	89.14

>PLN02865 galactokinase	Back alignment and domain information

Probab=100.00  E-value=3.3e-36  Score=255.22  Aligned_cols=145  Identities=70%  Similarity=1.118  Sum_probs=118.9

Q ss_pred             ChhHHhhhhCCCCceeEEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCeeEEecCCCCC
Q 031643            1 MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQ   80 (156)
Q Consensus         1 ~~~~f~~~fg~~p~~~~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~l~~l~~   80 (156)
                      |++.|++.||.+|+...+++|||||||+|||+||+||+||||||+++|++++++++|+++++++.++++..+|++++.+.
T Consensus        15 l~~~F~~~fg~~p~~~~~~~APGRVnlIGEHtDYngG~VLp~AI~~~~~va~~~~~~~~i~v~s~~~~~~~~~~~~~~~~   94 (423)
T PLN02865         15 IRERVAAMSGRNSGEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDPEVLLRSAQFEGEVRFRVDEIQH   94 (423)
T ss_pred             HHHHHHHHhCCCcccceEEEcCcceecccccccCCCCeEEeEEeeccEEEEEEECCCCEEEEEECCCCCceEEecccccc
Confidence            35789999999997335799999999999999999999999999999999999999999999998886556677664321


Q ss_pred             ccccccccccccccccchhccccchhhhHHHHHHHHHHcCCCCCCCEEEEEEecc-CCCCCCcchHHHHHHHhhhcC
Q 031643           81 PRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSD-NLDSSGLSSSAAVSMSFPFNI  156 (156)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gv~~~l~~~g~~~~~g~~i~i~s~i-P~~gaGLgSSAA~~Va~~~Al  156 (156)
                      +.      .   +. .-+..+...|.+|++|++..+.+.|..+++||++.|+|++ |+ |+|||||||++||++.|+
T Consensus        95 ~~------~---~~-~~~~~~~~~W~~Yv~gv~~~l~~~g~~~~~G~~~~v~g~vpP~-gsGLsSSAAl~va~~~al  160 (423)
T PLN02865         95 PI------A---NV-SSDSKEESNWGDYARGAVYALQSRGHALSQGITGYISGSEGLD-SSGLSSSAAVGVAYLLAL  160 (423)
T ss_pred             cc------c---cc-cccCCCCCCHHHHHHHHHHHHHHcCCCCCCceEEEEECCCCCC-CCcccHHHHHHHHHHHHH
Confidence            00      0   00 0001355789999999999999888766469999999999 56 999999999999998764

>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK05322 galactokinase; Provisional	Back alignment and domain information

>PTZ00290 galactokinase; Provisional	Back alignment and domain information

>PLN02521 galactokinase	Back alignment and domain information

>PRK05101 galactokinase; Provisional	Back alignment and domain information

>TIGR00131 gal_kin galactokinase	Back alignment and domain information

>PRK00555 galactokinase; Provisional	Back alignment and domain information

>PRK03817 galactokinase; Provisional	Back alignment and domain information

>TIGR00549 mevalon_kin mevalonate kinase	Back alignment and domain information

>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]	Back alignment and domain information

>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional	Back alignment and domain information

>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch	Back alignment and domain information

>PLN02677 mevalonate kinase	Back alignment and domain information

>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry []	Back alignment and domain information

>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]	Back alignment and domain information

>PRK03926 mevalonate kinase; Provisional	Back alignment and domain information

>PTZ00298 mevalonate kinase; Provisional	Back alignment and domain information

>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase	Back alignment and domain information

>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]	Back alignment and domain information

>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch	Back alignment and domain information

>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK01123 shikimate kinase; Provisional	Back alignment and domain information

>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>TIGR01920 Shik_kin_archae shikimate kinase	Back alignment and domain information

>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PLN02451 homoserine kinase	Back alignment and domain information

>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2	Back alignment and domain information

>TIGR00144 beta_RFAP_syn beta-RFAP synthase	Back alignment and domain information

>TIGR00191 thrB homoserine kinase	Back alignment and domain information

>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]	Back alignment and domain information

>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	Back alignment and domain information

>PTZ00299 homoserine kinase; Provisional	Back alignment and domain information

>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]	Back alignment and domain information

>PRK01212 homoserine kinase; Provisional	Back alignment and domain information

>PRK05905 hypothetical protein; Provisional	Back alignment and domain information

>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase	Back alignment and domain information

>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]	Back alignment and domain information

>PLN02407 diphosphomevalonate decarboxylase	Back alignment and domain information

>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]	Back alignment and domain information

>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]	Back alignment and domain information

>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]	Back alignment and domain information

>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]	Back alignment and domain information

>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		156
1pie_A		419	Crystal Structure Of Lactococcus Lactis Galactokina		6e-04

>pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase Complexed With Galactose Length = 419

Back alignment and structure

Iteration: 1

Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 22/129 (17%) Query: 1 MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60 + K +E+ G D + V SP RI +G H D+ GG V +I G D +V Sbjct: 34 LTEKFAEVFG-DTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKV 92 Query: 61 VLRSGQFD--GEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQS 118 L S F G + F +DE+++ + W NY +G + L+ Sbjct: 93 KLYSENFPKLGVIEFDLDEVEKKDGEL-------------------WSNYVKGMIVMLKG 133 Query: 119 RGNNLTQGI 127 G + +G Sbjct: 134 AGYEIDKGF 142

PyMOL of 1pie

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		156
1pie_A		419	Galactokinase; galactose, galactosemia, transferas	1e-27
2cz9_A		350	Probable galactokinase; structural genomics, NPPSF	7e-27
1wuu_A		399	Galactokinase; galactosemia, GHMP superfamily, tra	7e-23
3v2u_C		520	Protein GAL3; rossmann fold, GHMP superfamily, tra	2e-13
2a2c_A		478	N-acetylgalactosamine kinase; galactokinase, , tra	2e-13
1kkh_A		317	Mevalonate kinase; mixed beta sheet, phosphate-bin	1e-10
3k85_A		357	D-glycero-D-manno-heptose 1-phosphate kinase; bact	2e-07
1kvk_A		395	MK, mevalonate kinase; RMK, ATP, GHMP, transferase	4e-06
2x7i_A		308	Mevalonate kinase; transferase; HET: CIT; 2.20A {S	2e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Length = 419	Back alignment and structure

 Score =  105 bits (263), Expect = 1e-27
 Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 23/154 (14%)

Query: 1   MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
           +  K +E+ G   EV     SP RI  +G H D+ GG V   +I  G         D +V
Sbjct: 34  LTEKFAEVFGDTKEV-EYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKV 92

Query: 61  VLRSGQFD--GEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQS 118
            L S  F   G + F +DE+++                    +   W NY +G +  L+ 
Sbjct: 93  KLYSENFPKLGVIEFDLDEVEKK-------------------DGELWSNYVKGMIVMLKG 133

Query: 119 RGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSF 152
            G  + +G    I   +   +SGLSSSA++ +  
Sbjct: 134 AGYEIDKGFELLIK-GEIPTASGLSSSASLELLV 166

PyMOL of 1pie

>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Length = 350	Back alignment and structure

>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Length = 399	Back alignment and structure

>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Length = 520	Back alignment and structure

>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Length = 478	Back alignment and structure

>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Length = 317	Back alignment and structure

>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Length = 357	Back alignment and structure

>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Length = 395	Back alignment and structure

>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		156
3v2u_C		520	Protein GAL3; rossmann fold, GHMP superfamily, tra	99.97
1pie_A		419	Galactokinase; galactose, galactosemia, transferas	99.95
3k85_A		357	D-glycero-D-manno-heptose 1-phosphate kinase; bact	99.95
1wuu_A		399	Galactokinase; galactosemia, GHMP superfamily, tra	99.95
2a2c_A		478	N-acetylgalactosamine kinase; galactokinase, , tra	99.94
1kvk_A		395	MK, mevalonate kinase; RMK, ATP, GHMP, transferase	99.93
3k17_A		365	LIN0012 protein; protein structure initiative II(P	99.93
2cz9_A		350	Probable galactokinase; structural genomics, NPPSF	99.9
3gon_A		335	Phosphomevalonate kinase; GHMP kinase superfamily,	99.89
2pg9_A		337	Phosphomevalonate kinase; GHMP kinase superfamily,	99.89
1kkh_A		317	Mevalonate kinase; mixed beta sheet, phosphate-bin	99.88
4hac_A		321	Mevalonate kinase; GHMP, ATP binding, phosphorylat	99.85
2x7i_A		308	Mevalonate kinase; transferase; HET: CIT; 2.20A {S	99.83
2hfs_A		332	Mevalonate kinase, putative; GHMP kinase, trypanos	99.74
2oi2_A		292	Mevalonate kinase; enzyme-inhibitor complex, trans	99.68
2ww4_A		283	4-diphosphocytidyl-2C-methyl-D-erythritol kinase;	99.67
2v8p_A		271	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.62
2gs8_A		317	Mevalonate pyrophosphate decarboxylase; streptococ	99.54
1uek_A		275	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k	99.49
1h72_C		296	HK, homoserine kinase; transferase, threonine bios	99.49
3qt5_A		332	Mevalonate diphosphate decarboxylase; GHMP kinase	99.47
3pyf_A		306	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.25
1fi4_A		416	Mevalonate 5-diphosphate decarboxylase; mixed alph	98.93
3hul_A		298	HSK, HK, homoserine kinase; structural genomics, p	98.62
2hke_A		380	Diphosphomevalonate decarboxylase, putative; meval	98.11
3lto_A		323	Mevalonate diphosphate decarboxylase; protein stru	97.47
3f0n_A		414	Mevalonate pyrophosphate decarboxylase; cholestero	97.46

>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*	Back alignment and structure

Probab=99.97  E-value=5e-31  Score=227.65  Aligned_cols=134  Identities=18%  Similarity=0.220  Sum_probs=106.5

Q ss_pred             ChhHHhhhhCCCCceeEEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEc--CCCeEEEEeCCCCC-eeEEec--
Q 031643            1 MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPS--GDTEVVLRSGQFDG-EVRFSI--   75 (156)
Q Consensus         1 ~~~~f~~~fg~~p~~~~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~--~d~~i~i~s~~~~~-~~~~~l--   75 (156)
                      +++.|++.||.+|+  .+++|||||||+||||||+||+||||||+++|+++++++  +|++++|++.+... ..+|++  
T Consensus        26 l~~~F~~~fg~~p~--~v~~APGRVnLiGEHtDyngG~VLp~AI~~~~~vav~~~~~~d~~i~i~S~~~~~~~~~~~l~~  103 (520)
T 3v2u_C           26 VVDAFFQTYHVKPD--FIARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKILDEKNPSITLTNADPKFAQRKFDLPL  103 (520)
T ss_dssp             HHHHHHHHHSSCCS--EEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEECCCSSCEEEEEESSTTSCCEEEECCT
T ss_pred             HHHHHHHHhCCCCC--EEEEcceeEEEeccCeeeCCCEEEEEEeecceEEEEEeccCCCCEEEEEECCCCCCceEEEecc
Confidence            35789999999997  679999999999999999999999999999999999998  78899999877542 356776  


Q ss_pred             CCCCCccccccccccccccccchhccccchhhhHHHHHH----HHHHc------CCCCCCCEEEEEEeccCCCCCCcchH
Q 031643           76 DEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALY----ALQSR------GNNLTQGIIGYICGSDNLDSSGLSSS  145 (156)
Q Consensus        76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gv~~----~l~~~------g~~~~~g~~i~i~s~iP~~gaGLgSS  145 (156)
                      ++....               ++ .....|.+|++|++.    .+.+.      |..+ .||+++|+|+||+ |+||  |
T Consensus       104 ~~~~~~---------------i~-~~~~~W~~Yv~g~i~~v~~~l~~~~~~~~~g~~~-~G~~i~i~s~vP~-gsGL--S  163 (520)
T 3v2u_C          104 DGSYMA---------------ID-PSVSEWSNYFKCGLHVAHSYLKKIAPERFNNTPL-VGAQIFCQSDIPT-GGGL--S  163 (520)
T ss_dssp             TCCCCC---------------CC-TTSCCHHHHHHHHHHHHHHHHHHHCHHHHSSSCC-CCEEEEEEECCCT-TSSH--H
T ss_pred             Cccccc---------------cC-cccccHHHHHHHHHHHHHHHHHhhcccccccCCC-CceEEEEecCCCC-CCCH--H
Confidence            321000               00 245689999998653    34432      3455 7999999999997 9999  9


Q ss_pred             HHHHHHhhhcC
Q 031643          146 AAVSMSFPFNI  156 (156)
Q Consensus       146 AA~~Va~~~Al  156 (156)
                      ||++||++.|+
T Consensus       164 AA~~va~~~Al  174 (520)
T 3v2u_C          164 SAFTCAAALAT  174 (520)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988763

PyMOL of 3v2u

>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7	Back alignment and structure

>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}	Back alignment and structure

>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7	Back alignment and structure

>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*	Back alignment and structure

>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A	Back alignment and structure

>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}	Back alignment and structure

>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*	Back alignment and structure

>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A	Back alignment and structure

>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A	Back alignment and structure

>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}	Back alignment and structure

>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}	Back alignment and structure

>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*	Back alignment and structure

>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}	Back alignment and structure

>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*	Back alignment and structure

>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*	Back alignment and structure

>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}	Back alignment and structure

>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5	Back alignment and structure

>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*	Back alignment and structure

>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A	Back alignment and structure

>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*	Back alignment and structure

>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2	Back alignment and structure

>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}	Back alignment and structure

>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}	Back alignment and structure

>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}	Back alignment and structure

>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		156
d1piea1		205	d.14.1.5 (A:9-213) Galactokinase {Lactococcus lact	9e-14
d1kvka1		225	d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus	5e-13
d1wuua1		215	d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapi	2e-10
d1kkha1		180	d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Met	1e-08
d1s4ea1		176	d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococ	2e-07

>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]} Length = 205	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Galactokinase
species: Lactococcus lactis [TaxId: 1358]

 Score = 63.7 bits (154), Expect = 9e-14
 Identities = 39/152 (25%), Positives = 60/152 (39%), Gaps = 19/152 (12%)

Query: 1   MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
           +  K +E+ G   EV     SP RI  +G H D+ GG V   +I  G         D +V
Sbjct: 6   LTEKFAEVFGDTKEV-EYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKV 64

Query: 61  VLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRG 120
            L S  F                  K   +    D  + K+   W NY +G +  L+  G
Sbjct: 65  KLYSENFP-----------------KLGVIEFDLDEVEKKDGELWSNYVKGMIVMLKGAG 107

Query: 121 NNLTQGIIGYICGSDNLDSSGLSSSAAVSMSF 152
             + +G    +   +   +SGLSSSA++ +  
Sbjct: 108 YEIDKGFE-LLIKGEIPTASGLSSSASLELLV 138

PyMOL of d1piea1

>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 225	Back information, alignment and structure

>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 215	Back information, alignment and structure

>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 180	Back information, alignment and structure

>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 176	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		156
d1piea1		205	Galactokinase {Lactococcus lactis [TaxId: 1358]}	100.0
d1wuua1		215	Galactokinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1s4ea1		176	Galactokinase {Archaeon Pyrococcus furiosus [TaxId	99.97
d1kkha1		180	Mevalonate kinase {Archaeon Methanococcus jannasch	99.96
d1kvka1		225	Mevalonate kinase {Rat (Rattus norvegicus) [TaxId:	99.96
d1k47a1		194	Phosphomevalonate kinase (PMK) {Streptococcus pneu	99.89
d1h72c1		163	Homoserine kinase {Archaeon Methanococcus jannasch	99.24
d1ueka1		148	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k	97.99
d1oj4a1		163	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k	97.8
d1fi4a1		188	Mevalonate 5-diphosphate decarboxylase {Baker's ye	94.37

>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Galactokinase
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=1.9e-38  Score=242.73  Aligned_cols=134  Identities=31%  Similarity=0.436  Sum_probs=117.4

Q ss_pred             hhHHhhhhCCCCceeEEEEcceeeeecccccccCCCeEEEeeeccceEEEEEEcCCCeEEEEeCCCCCe--eEEecCCCC
Q 031643            2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGE--VRFSIDEIQ   79 (156)
Q Consensus         2 ~~~f~~~fg~~p~~~~~~~APGRv~L~GEH~d~~Gg~vla~Ai~~~~~v~~~~~~d~~i~i~s~~~~~~--~~~~l~~l~   79 (156)
                      .+.|++.||..|+ +.+++|||||+|||||+||+||+|+|+||++++++.+++++|+++++.+.++++.  .+++..++.
T Consensus         7 ~~~f~~~f~~~~~-~~~~~aPgRv~L~GeH~Dy~gg~vl~~AI~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~~~~~~~~   85 (205)
T d1piea1           7 TEKFAEVFGDTKE-VEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKVKLYSENFPKLGVIEFDLDEVE   85 (205)
T ss_dssp             HHHHHHHHSCCCS-CEEEEEEEEEEEECCSCTTTTCEEEEEEEEEEEEEEEEECSSSEEEEEETTCGGGCCEEEETTCTT
T ss_pred             HHHHHHHhCCCcc-eeEEEcceEEEEecCCeeECCCEeecccccceEEEEEecCCCCeeeeecCCCCccceeeccccccc
Confidence            5899999999886 3478999999999999999999999999999999999999999999999888753  444555433


Q ss_pred             CccccccccccccccccchhccccchhhhHHHHHHHHHHcCCCCCCCEEEEEEeccCCCCCCcchHHHHHHHhhhcC
Q 031643           80 QPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQGIIGYICGSDNLDSSGLSSSAAVSMSFPFNI  156 (156)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~y~~gv~~~l~~~g~~~~~g~~i~i~s~iP~~gaGLgSSAA~~Va~~~Al  156 (156)
                      .                   .+...|.+|+++++..+.+.+..+..||++.|.|+||+ |+|||||||++||++.||
T Consensus        86 ~-------------------~~~~~~~~~~~~~i~~l~~~~~~~~~G~~i~i~s~iP~-gsGLgSSAAl~va~~~al  142 (205)
T d1piea1          86 K-------------------KDGELWSNYVKGMIVMLKGAGYEIDKGFELLIKGEIPT-ASGLSSSASLELLVGVVL  142 (205)
T ss_dssp             S-------------------CCTTCTHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCT-TSSSCHHHHHHHHHHHHH
T ss_pred             c-------------------ccccchhHHHHHHHHHHHHhCCccccCeEEEEecCCcc-ccccCccHHHHHHHHHHH
Confidence            1                   36778999999999999888777667999999999997 999999999999999874

PyMOL of d1piea1

>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}	Back information, alignment and structure

>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure