Citrus Sinensis ID: 031704

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150----
Protein Sequence
MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLSKFYCSS
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEEEcccccccEEEEEcccccccccccEEEEEEEEEEEEEccEEEEEEEEEccccccccccHHHHcccccEEEEEEEccccHHHHHHHHHHHHHHHHHccccccEEEEEEEccccccccEEEHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHEEEEEEEccccccHHHHHHHHHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHcHHHcHHHHHHHHcccccEEEEEEccccccccccEccHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MASSTSQQEFDYLFKLLLIgdsgvgksTLLLSFtsdtfeelsptigvdfkikhvalggKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVgnkvdkvcpwrlfLSGFWHFLLSKFYCSS
Flexible Loop (DISEMBL)
MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLtssyyrgaqGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLSKFYCSS
Low Complexity Region (SEG)
MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLSKFYCSS
Disordered region (IsUnstruct)
*********FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLSKFYC**
Disordered Region (DISOPRED)
***********YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLF***FWHFLLSKFYCS*
Disordered Region (DISEMBL)
********EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLSKFYCSS
Disordered Region (DISPRO)
******QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLS******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLSKFYCSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	154	2.2.26 [Sep-21-2011]
O23657	212	Ras-related protein RABC1	yes	no	0.850	0.617	0.862	7e-63
O49841	210	Ras-related protein RABC2	no	no	0.850	0.623	0.732	3e-55
Q9SF92	205	Ras-related protein RABC2	no	no	0.850	0.639	0.732	2e-48
P36862	203	GTP-binding protein yptV3	N/A	no	0.779	0.591	0.677	2e-41
Q5ZLG1	206	Ras-related protein Rab-1	yes	no	0.759	0.567	0.680	3e-41
Q6DHC1	205	Ras-related protein Rab-1	yes	no	0.759	0.570	0.672	5e-41
Q0IIG8	206	Ras-related protein Rab-1	yes	no	0.759	0.567	0.672	1e-40
Q5R5H5	206	Ras-related protein Rab-1	yes	no	0.759	0.567	0.672	1e-40
Q9NP72	206	Ras-related protein Rab-1	yes	no	0.759	0.567	0.672	1e-40
Q5EB77	206	Ras-related protein Rab-1	yes	no	0.759	0.567	0.672	2e-40

>sp|O23657|RABC1_ARATH Ras-related protein RABC1 OS=Arabidopsis thaliana GN=RABC1 PE=2 SV=1

 Score =  239 bits (609), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 113/131 (86%), Positives = 126/131 (96%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
           M SS+ Q EFDYLFK+LLIGDSGVGKS+LLLSFTS+TF++LSPTIGVDFK+K++ +G KK
Sbjct: 1   MGSSSGQPEFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGEKK 60

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNL+DIWAKEIDLYSTNQDC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDC 120

Query: 121 IKLLVGNKVDK 131
           IK+LVGNKVDK
Sbjct: 121 IKMLVGNKVDK 131

Intracellular vesicle trafficking and protein transport.
Arabidopsis thaliana (taxid: 3702)

>sp|O49841|RAC2A_ARATH Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1 SV=1

 Score =  213 bits (543), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 96/131 (73%), Positives = 117/131 (89%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
           M SS+ Q  +D  FK+LLIGDSGVGKS+LL+SF S + E+L+PTIGVDFKIK + +GGK+
Sbjct: 1   MGSSSGQSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKR 60

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +KL IWDTAGQERFRTLTSSYYRGAQGII+VYDVTRR+TFTNL D+W KEI+LYSTNQ+C
Sbjct: 61  LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQEC 120

Query: 121 IKLLVGNKVDK 131
           +++LVGNKVD+
Sbjct: 121 VRMLVGNKVDR 131

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SF92|RAC2B_ARATH Ras-related protein RABC2b OS=Arabidopsis thaliana GN=RABC2B PE=2 SV=1

 Score =  191 bits (485), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 96/131 (73%), Positives = 116/131 (88%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
           M SS+ Q  +D  FK+LLIGDSGVGKS+LLLSF S + E+L+PTIGVDFKIK + + GK+
Sbjct: 1   MGSSSGQSGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRGKR 60

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +KL IWDTAGQE+FRTLTSSY+RG+QGII+VYDVT+R+TF NLADIWAKEI+LYSTN DC
Sbjct: 61  LKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHDC 120

Query: 121 IKLLVGNKVDK 131
           IK+LVGNKVD+
Sbjct: 121 IKMLVGNKVDR 131

Intracellular vesicle trafficking and protein transport.

Arabidopsis thaliana (taxid: 3702)

>sp|P36862|YPTV3_VOLCA GTP-binding protein yptV3 OS=Volvox carteri GN=YPTV3 PE=3 SV=1

 Score =  167 bits (424), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 82/121 (67%), Positives = 96/121 (79%), Gaps = 1/121 (0%)

Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
           DY FK+LL+GDSGVGKS +L  FTS  FEE  + TIGVDFK+K++   GK+ KL IWDTA
Sbjct: 7   DYTFKVLLVGDSGVGKSCILTRFTSGIFEESTTSTIGVDFKVKYLTADGKRCKLTIWDTA 66

Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQERFRTLTSSYYRGAQGII VYDVTRRDTF +L   W +E D+YST +  IK++V NKV
Sbjct: 67  GQERFRTLTSSYYRGAQGIIFVYDVTRRDTFESLEANWMREFDIYSTVESAIKMVVANKV 126

Query: 130 D 130
           D
Sbjct: 127 D 127

Protein transport. Probably involved in vesicular traffic.

Volvox carteri (taxid: 3067)

>sp|Q5ZLG1|RAB18_CHICK Ras-related protein Rab-18 OS=Gallus gallus GN=RAB18 PE=2 SV=1

 Score =  167 bits (422), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 81/119 (68%), Positives = 98/119 (82%), Gaps = 2/119 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQE
Sbjct: 9   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           RFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D +K+LVGNK+DK
Sbjct: 69  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVKMLVGNKIDK 126

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Gallus gallus (taxid: 9031)

>sp|Q6DHC1|RB18B_DANRE Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1

 Score =  166 bits (420), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 80/119 (67%), Positives = 99/119 (83%), Gaps = 2/119 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +A+ G + KLAIWDTAGQE
Sbjct: 9   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQE 68

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           RFRTLT SYYRGAQG+I+VYDVT+RDTFT L + W  E++ Y T  D +K+LVGNK+DK
Sbjct: 69  RFRTLTPSYYRGAQGVILVYDVTKRDTFTKLEN-WLNELETYCTRNDLVKMLVGNKIDK 126

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Danio rerio (taxid: 7955)

>sp|Q0IIG8|RAB18_BOVIN Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 PE=2 SV=1

 Score =  165 bits (417), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/119 (67%), Positives = 97/119 (81%), Gaps = 2/119 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQE
Sbjct: 9   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           RFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DK
Sbjct: 69  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK 126

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Bos taurus (taxid: 9913)

>sp|Q5R5H5|RAB18_PONAB Ras-related protein Rab-18 OS=Pongo abelii GN=RAB18 PE=2 SV=1

 Score =  165 bits (417), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/119 (67%), Positives = 97/119 (81%), Gaps = 2/119 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQE
Sbjct: 9   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           RFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DK
Sbjct: 69  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK 126

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Pongo abelii (taxid: 9601)

>sp|Q9NP72|RAB18_HUMAN Ras-related protein Rab-18 OS=Homo sapiens GN=RAB18 PE=1 SV=1

 Score =  165 bits (417), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/119 (67%), Positives = 97/119 (81%), Gaps = 2/119 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQE
Sbjct: 9   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           RFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DK
Sbjct: 69  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK 126

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Homo sapiens (taxid: 9606)

>sp|Q5EB77|RAB18_RAT Ras-related protein Rab-18 OS=Rattus norvegicus GN=Rab18 PE=2 SV=1

 Score =  164 bits (416), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/119 (67%), Positives = 97/119 (81%), Gaps = 2/119 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQE
Sbjct: 9   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           RFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DK
Sbjct: 69  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK 126

Plays a role in apical endocytosis/recycling. May be implicated in transport between the plasma membrane and early endosomes. Plays a key role in eye and brain development and neurodegeneration.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
255558462	571	protein phosphatase 2c, putative [Ricinu	0.850	0.229	0.900	2e-64
225457841	211	PREDICTED: ras-related protein RABC1 iso	0.837	0.611	0.906	1e-63
302142732	307	unnamed protein product [Vitis vinifera]	0.837	0.420	0.906	2e-63
449458101	213	PREDICTED: ras-related protein RABC1-lik	0.844	0.610	0.9	7e-63
224062966	211	predicted protein [Populus trichocarpa]	0.831	0.606	0.906	7e-63
388517279	209	unknown [Lotus japonicus]	0.850	0.626	0.870	2e-62
224093425	209	predicted protein [Populus trichocarpa]	0.850	0.626	0.885	3e-62
1370174	207	RAB1Y [Lotus japonicus]	0.837	0.623	0.875	5e-62
449459232	209	PREDICTED: ras-related protein RABC1-lik	0.850	0.626	0.862	8e-62
359806090	214	uncharacterized protein LOC100794330 [Gl	0.811	0.584	0.92	9e-62

>gi|255558462|ref|XP_002520256.1| protein phosphatase 2c, putative [Ricinus communis] gi|223540475|gb|EEF42042.1| protein phosphatase 2c, putative [Ricinus communis]

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 118/131 (90%), Positives = 128/131 (97%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
           M SS+SQ EFDYLFKLLLIGDSGVGKS+LLLSFTS+TF++LSPTIGVDFK+KHV +GGKK
Sbjct: 1   MESSSSQPEFDYLFKLLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKHVTIGGKK 60

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNL+DIWAKEIDLYSTNQDC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDC 120

Query: 121 IKLLVGNKVDK 131
           IK+LVGNKVDK
Sbjct: 121 IKMLVGNKVDK 131

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457841|ref|XP_002267387.1| PREDICTED: ras-related protein RABC1 isoform 1 [Vitis vinifera] gi|359492296|ref|XP_003634396.1| PREDICTED: ras-related protein RABC1 [Vitis vinifera]

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 117/129 (90%), Positives = 127/129 (98%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMK 62
           SS+SQ EFDYLFKLLLIGDSGVGKSTLLLSFTS+TFE+LSPTIGVDFK+KHV +GGKK+K
Sbjct: 5   SSSSQPEFDYLFKLLLIGDSGVGKSTLLLSFTSNTFEDLSPTIGVDFKVKHVNIGGKKLK 64

Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
           LAIWDTAGQERFRTLTSSYYRGAQG+IMVYDVTRR+TFTNL+DIWAKEIDLYSTNQDCIK
Sbjct: 65  LAIWDTAGQERFRTLTSSYYRGAQGVIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIK 124

Query: 123 LLVGNKVDK 131
           +LVGNKVDK
Sbjct: 125 MLVGNKVDK 133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142732|emb|CBI19935.3| unnamed protein product [Vitis vinifera]

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 117/129 (90%), Positives = 127/129 (98%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMK 62
           SS+SQ EFDYLFKLLLIGDSGVGKSTLLLSFTS+TFE+LSPTIGVDFK+KHV +GGKK+K
Sbjct: 101 SSSSQPEFDYLFKLLLIGDSGVGKSTLLLSFTSNTFEDLSPTIGVDFKVKHVNIGGKKLK 160

Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
           LAIWDTAGQERFRTLTSSYYRGAQG+IMVYDVTRR+TFTNL+DIWAKEIDLYSTNQDCIK
Sbjct: 161 LAIWDTAGQERFRTLTSSYYRGAQGVIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIK 220

Query: 123 LLVGNKVDK 131
           +LVGNKVDK
Sbjct: 221 MLVGNKVDK 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458101|ref|XP_004146786.1| PREDICTED: ras-related protein RABC1-like isoform 1 [Cucumis sativus] gi|449458103|ref|XP_004146787.1| PREDICTED: ras-related protein RABC1-like isoform 2 [Cucumis sativus] gi|449529576|ref|XP_004171774.1| PREDICTED: ras-related protein RABC1-like isoform 1 [Cucumis sativus] gi|449529578|ref|XP_004171775.1| PREDICTED: ras-related protein RABC1-like isoform 2 [Cucumis sativus]

 Score =  244 bits (624), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 117/130 (90%), Positives = 125/130 (96%)

Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKM 61
           A S+SQ EFDYLFKLLLIGDSGVGKSTLLL FTSD+FE+LSPTIGVDFKIKHV +GGKK+
Sbjct: 4   APSSSQPEFDYLFKLLLIGDSGVGKSTLLLRFTSDSFEDLSPTIGVDFKIKHVTVGGKKL 63

Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           KLAIWDTAGQERFRTLT SYYRGAQGIIMVYDVTRR+TFTNL+DIWAKEIDLYSTNQDCI
Sbjct: 64  KLAIWDTAGQERFRTLTGSYYRGAQGIIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCI 123

Query: 122 KLLVGNKVDK 131
           K+LVGNKVDK
Sbjct: 124 KMLVGNKVDK 133

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062966|ref|XP_002300952.1| predicted protein [Populus trichocarpa] gi|222842678|gb|EEE80225.1| predicted protein [Populus trichocarpa]

 Score =  244 bits (624), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 116/128 (90%), Positives = 125/128 (97%)

Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKL 63
           STSQQEF+YLFKLLLIGDSGVGKSTLLLSFTS  FE+LSPTIGVDFK+KHV +GGKK+KL
Sbjct: 5   STSQQEFEYLFKLLLIGDSGVGKSTLLLSFTSKNFEDLSPTIGVDFKVKHVTIGGKKLKL 64

Query: 64  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL 123
           AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR+TFTNL++IWAKEIDLYSTNQDCIK+
Sbjct: 65  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSEIWAKEIDLYSTNQDCIKM 124

Query: 124 LVGNKVDK 131
           LVGNKVDK
Sbjct: 125 LVGNKVDK 132

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517279|gb|AFK46701.1| unknown [Lotus japonicus]

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 114/131 (87%), Positives = 128/131 (97%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
           M SS++ QEFDYLFKLL+IGDSGVGKS+LLLSFTSD F+++SPTIGVDFK+K+VA+GGKK
Sbjct: 1   MDSSSAPQEFDYLFKLLMIGDSGVGKSSLLLSFTSDEFQDMSPTIGVDFKVKYVAIGGKK 60

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNL++IWAKEIDLYSTNQDC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSEIWAKEIDLYSTNQDC 120

Query: 121 IKLLVGNKVDK 131
           IK+LVGNKVDK
Sbjct: 121 IKMLVGNKVDK 131

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093425|ref|XP_002309918.1| predicted protein [Populus trichocarpa] gi|222852821|gb|EEE90368.1| predicted protein [Populus trichocarpa]

 Score =  242 bits (618), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 116/131 (88%), Positives = 126/131 (96%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
           M SS+S  EFDYLFKLL+IGDSGVGKS+LLLSFTSDTFE+LSPTIGVDFK+K V +GGKK
Sbjct: 1   MDSSSSSPEFDYLFKLLMIGDSGVGKSSLLLSFTSDTFEDLSPTIGVDFKVKFVNIGGKK 60

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +KLAIWDTAGQERFRTLTSSYYRGAQGI+MVYDVTRRDTFTNL++IWAKEIDLYSTNQDC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIVMVYDVTRRDTFTNLSEIWAKEIDLYSTNQDC 120

Query: 121 IKLLVGNKVDK 131
           IKLLVGNKVDK
Sbjct: 121 IKLLVGNKVDK 131

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1370174|emb|CAA98164.1| RAB1Y [Lotus japonicus]

 Score =  241 bits (616), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 113/129 (87%), Positives = 127/129 (98%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMK 62
           SS++ QEFDYLFKLL+IGDSGVGKS+LLLSFTSD F+++SPTIGVDFK+K+VA+GGKK+K
Sbjct: 1   SSSAPQEFDYLFKLLMIGDSGVGKSSLLLSFTSDEFQDMSPTIGVDFKVKYVAIGGKKLK 60

Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
           LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNL++IWAKEIDLYSTNQDCIK
Sbjct: 61  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSEIWAKEIDLYSTNQDCIK 120

Query: 123 LLVGNKVDK 131
           +LVGNKVDK
Sbjct: 121 MLVGNKVDK 129

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459232|ref|XP_004147350.1| PREDICTED: ras-related protein RABC1-like [Cucumis sativus] gi|449513301|ref|XP_004164289.1| PREDICTED: ras-related protein RABC1-like [Cucumis sativus]

 Score =  241 bits (614), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 113/131 (86%), Positives = 126/131 (96%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
           M S+++Q EFDYLFKLL+IGDSGVGKS+LLLSFTSD FE+LSPTIGVDFK+K+V  GGKK
Sbjct: 1   MDSTSNQTEFDYLFKLLMIGDSGVGKSSLLLSFTSDNFEDLSPTIGVDFKVKYVTAGGKK 60

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNL+++WAKEIDLYSTNQDC
Sbjct: 61  LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSEVWAKEIDLYSTNQDC 120

Query: 121 IKLLVGNKVDK 131
           IK+LVGNKVDK
Sbjct: 121 IKMLVGNKVDK 131

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806090|ref|NP_001241441.1| uncharacterized protein LOC100794330 [Glycine max] gi|255645015|gb|ACU23007.1| unknown [Glycine max]

 Score =  241 bits (614), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 115/125 (92%), Positives = 123/125 (98%)

Query: 7   QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIW 66
           Q EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE+LSPTIGVDFK+K+V +GGKK+KLAIW
Sbjct: 10  QPEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEDLSPTIGVDFKVKYVTIGGKKLKLAIW 69

Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
           DTAGQERFRTLTSSYYRGAQGIIMVYDVTRR+TFTNL+DIWAKEIDLYSTNQDCIK+LVG
Sbjct: 70  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRETFTNLSDIWAKEIDLYSTNQDCIKMLVG 129

Query: 127 NKVDK 131
           NKVDK
Sbjct: 130 NKVDK 134

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
TAIR|locus:2029167	212	RAB18 "RAB GTPASE HOMOLOG B18"	0.850	0.617	0.862	1.9e-58
TAIR|locus:2831859	210	RABC2A "RAB GTPase homolog C2A	0.850	0.623	0.732	8.3e-51
TAIR|locus:2085084	205	RABC2b "RAB GTPase homolog C2B	0.850	0.639	0.732	2e-49
UNIPROTKB|Q5ZLG1	206	RAB18 "Ras-related protein Rab	0.753	0.563	0.686	4.2e-40
ZFIN|ZDB-GENE-040801-185	205	rab18b "RAB18B, member RAS onc	0.753	0.565	0.677	4.2e-40
UNIPROTKB|Q0IIG8	206	RAB18 "Ras-related protein Rab	0.753	0.563	0.677	1.4e-39
UNIPROTKB|Q9NP72	206	RAB18 "Ras-related protein Rab	0.753	0.563	0.677	1.4e-39
UNIPROTKB|I3LC07	206	RAB18 "Uncharacterized protein	0.753	0.563	0.677	1.4e-39
UNIPROTKB|Q5R5H5	206	RAB18 "Ras-related protein Rab	0.753	0.563	0.677	1.4e-39
MGI|MGI:102790	206	Rab18 "RAB18, member RAS oncog	0.753	0.563	0.677	1.4e-39

TAIR|locus:2029167 RAB18 "RAB GTPASE HOMOLOG B18" [Arabidopsis thaliana (taxid:3702)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 113/131 (86%), Positives = 126/131 (96%)

Query:     1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
             M SS+ Q EFDYLFK+LLIGDSGVGKS+LLLSFTS+TF++LSPTIGVDFK+K++ +G KK
Sbjct:     1 MGSSSGQPEFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGEKK 60

Query:    61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
             +KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNL+DIWAKEIDLYSTNQDC
Sbjct:    61 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDC 120

Query:   121 IKLLVGNKVDK 131
             IK+LVGNKVDK
Sbjct:   121 IKMLVGNKVDK 131

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2831859 RABC2A "RAB GTPase homolog C2A" [Arabidopsis thaliana (taxid:3702)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 96/131 (73%), Positives = 117/131 (89%)

Query:     1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
             M SS+ Q  +D  FK+LLIGDSGVGKS+LL+SF S + E+L+PTIGVDFKIK + +GGK+
Sbjct:     1 MGSSSGQSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKR 60

Query:    61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
             +KL IWDTAGQERFRTLTSSYYRGAQGII+VYDVTRR+TFTNL D+W KEI+LYSTNQ+C
Sbjct:    61 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQEC 120

Query:   121 IKLLVGNKVDK 131
             +++LVGNKVD+
Sbjct:   121 VRMLVGNKVDR 131

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005777 "peroxisome" evidence=IDA

GO:0030742 "GTP-dependent protein binding" evidence=IPI

GO:0080115 "myosin XI tail binding" evidence=IPI

TAIR|locus:2085084 RABC2b "RAB GTPase homolog C2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 96/131 (73%), Positives = 116/131 (88%)

Query:     1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
             M SS+ Q  +D  FK+LLIGDSGVGKS+LLLSF S + E+L+PTIGVDFKIK + + GK+
Sbjct:     1 MGSSSGQSGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRGKR 60

Query:    61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
             +KL IWDTAGQE+FRTLTSSY+RG+QGII+VYDVT+R+TF NLADIWAKEI+LYSTN DC
Sbjct:    61 LKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHDC 120

Query:   121 IKLLVGNKVDK 131
             IK+LVGNKVD+
Sbjct:   121 IKMLVGNKVDR 131

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q5ZLG1 RAB18 "Ras-related protein Rab-18" [Gallus gallus (taxid:9031)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 81/118 (68%), Positives = 98/118 (83%)

Query:    15 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
             K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQER
Sbjct:    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69

Query:    74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
             FRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D +K+LVGNK+DK
Sbjct:    70 FRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVKMLVGNKIDK 126

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0001654 "eye development" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

ZFIN|ZDB-GENE-040801-185 rab18b "RAB18B, member RAS oncogene family" [Danio rerio (taxid:7955)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 80/118 (67%), Positives = 99/118 (83%)

Query:    15 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
             K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +A+ G + KLAIWDTAGQER
Sbjct:    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQER 69

Query:    74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
             FRTLT SYYRGAQG+I+VYDVT+RDTFT L + W  E++ Y T  D +K+LVGNK+DK
Sbjct:    70 FRTLTPSYYRGAQGVILVYDVTKRDTFTKLEN-WLNELETYCTRNDLVKMLVGNKIDK 126

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007420 "brain development" evidence=IMP

GO:0001654 "eye development" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

UNIPROTKB|Q0IIG8 RAB18 "Ras-related protein Rab-18" [Bos taurus (taxid:9913)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 80/118 (67%), Positives = 97/118 (82%)

Query:    15 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
             K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQER
Sbjct:    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69

Query:    74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
             FRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DK
Sbjct:    70 FRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK 126

GO:0019003 "GDP binding" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0001654 "eye development" evidence=ISS

GO:0005886 "plasma membrane" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|Q9NP72 RAB18 "Ras-related protein Rab-18" [Homo sapiens (taxid:9606)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 80/118 (67%), Positives = 97/118 (82%)

Query:    15 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
             K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQER
Sbjct:    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69

Query:    74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
             FRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DK
Sbjct:    70 FRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK 126

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0003924 "GTPase activity" evidence=NAS

GO:0006897 "endocytosis" evidence=NAS

GO:0007264 "small GTPase mediated signal transduction" evidence=NAS

GO:0001654 "eye development" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019003 "GDP binding" evidence=IDA

GO:0005622 "intracellular" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=NAS

UNIPROTKB|I3LC07 RAB18 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 80/118 (67%), Positives = 97/118 (82%)

Query:    15 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
             K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQER
Sbjct:    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69

Query:    74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
             FRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DK
Sbjct:    70 FRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK 126

GO:0005622 "intracellular" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|Q5R5H5 RAB18 "Ras-related protein Rab-18" [Pongo abelii (taxid:9601)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 80/118 (67%), Positives = 97/118 (82%)

Query:    15 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
             K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQER
Sbjct:    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69

Query:    74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
             FRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DK
Sbjct:    70 FRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK 126

GO:0001654 "eye development" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

MGI|MGI:102790 Rab18 "RAB18, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 80/118 (67%), Positives = 97/118 (82%)

Query:    15 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
             K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQER
Sbjct:    10 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 69

Query:    74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
             FRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D + +LVGNK+DK
Sbjct:    70 FRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK 126

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019003 "GDP binding" evidence=ISO

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P11620	YPT1_SCHPO	No assigned EC number	0.656	0.7922	0.6009	yes	no
P62822	RAB1A_CANFA	No assigned EC number	0.6406	0.8116	0.6097	yes	no
P34139	RAB1A_DICDI	No assigned EC number	0.64	0.7922	0.6039	yes	no
O23657	RABC1_ARATH	No assigned EC number	0.8625	0.8506	0.6179	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	154
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-75
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	5e-75
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	3e-64
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	1e-59
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	2e-59
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	3e-59
pfam00071	162	pfam00071, Ras, Ras family	3e-56
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-51
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	2e-49
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-45
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	2e-44
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	2e-44
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	2e-41
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	8e-41
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	1e-40
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	8e-40
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	9e-40
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	9e-40
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	5e-38
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	3e-36
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	5e-36
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	3e-35
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	7e-35
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	9e-35
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	1e-33
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	3e-32
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	9e-31
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	1e-30
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	1e-30
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	5e-29
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	4e-28
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	3e-25
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	4e-25
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	3e-24
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	9e-24
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	1e-23
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	3e-23
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	3e-23
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	1e-22
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-22
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	3e-22
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	4e-22
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	5e-22
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	9e-22
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	1e-21
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	1e-21
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	3e-21
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	4e-21
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-19
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	3e-19
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	6e-19
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	6e-19
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	7e-19
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	9e-19
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	1e-18
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	3e-18
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	8e-18
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	1e-17
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	2e-17
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	6e-17
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	7e-17
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	2e-16
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	3e-16
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	4e-16
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	5e-16
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	9e-16
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	1e-15
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	1e-15
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	3e-15
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	5e-15
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	8e-15
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	3e-14
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	5e-14
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	6e-14
pfam08477	116	pfam08477, Miro, Miro-like protein	8e-14
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	1e-13
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	1e-13
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	2e-13
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	5e-13
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	2e-12
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	8e-12
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	9e-12
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	1e-11
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	3e-11
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	3e-11
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	6e-11
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	6e-11
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	7e-11
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	1e-10
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	1e-10
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	2e-10
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	5e-10
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	7e-09
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	8e-09
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	2e-08
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	2e-08
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	3e-08
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	3e-08
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	4e-08
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	6e-08
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	6e-08
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	1e-07
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	8e-06
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	1e-05
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	2e-05
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	3e-05
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	4e-05
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	7e-05
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	3e-04
cd01850	275	cd01850, CDC_Septin, CDC/Septin GTPase family	7e-04
cd11384	286	cd11384, RagA_like, Rag GTPase, subfamily of Ras-r	8e-04
cd04105	202	cd04105, SR_beta, Signal recognition particle rece	0.002
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	0.002
cd09915	175	cd09915, Rag, Rag GTPase subfamily of Ras-related	0.004

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  221 bits (565), Expect = 2e-75
 Identities = 91/120 (75%), Positives = 103/120 (85%), Gaps = 2/120 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K+LLIGDSGVGKS+LLL FT DTF+E LS TIGVDFK+K V + GKK+KLAIWDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132
           RFRTLTSSYYRGAQG+I+VYDVTRRDTF NL D W  E+D YSTN D +K+LVGNK+DK 
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNL-DTWLNELDTYSTNPDAVKMLVGNKIDKE 119

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  222 bits (567), Expect = 5e-75
 Identities = 96/132 (72%), Positives = 117/132 (88%), Gaps = 1/132 (0%)

Query: 1   MASSTSQQE-FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGK 59
           M SS+ Q   +D  FK+LLIGDSGVGKS+LL+SF S + E+L+PTIGVDFKIK + +GGK
Sbjct: 1   MGSSSGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGK 60

Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
           ++KL IWDTAGQERFRTLTSSYYR AQGII+VYDVTRR+TFTNL+D+W KE++LYSTNQD
Sbjct: 61  RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQD 120

Query: 120 CIKLLVGNKVDK 131
           C+K+LVGNKVD+
Sbjct: 121 CVKMLVGNKVDR 132

Length = 211

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  193 bits (493), Expect = 3e-64
 Identities = 68/118 (57%), Positives = 89/118 (75%), Gaps = 3/118 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FK++LIGDSGVGKS+LL  FT   F E    TIGVDFK K + + GK++KL IWDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           RFR++TSSYYRGA G ++VYD+T R++F NL + W KE+  Y+ + + + +LVGNK D
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLEN-WLKELREYA-SPNVVIMLVGNKSD 116

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  181 bits (462), Expect = 1e-59
 Identities = 74/121 (61%), Positives = 94/121 (77%), Gaps = 3/121 (2%)

Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
           DYLFKLLLIGDSGVGKS LLL F+ D+F      TIG+DFKI+ + L GKK+KL IWDTA
Sbjct: 1   DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTA 60

Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQERFRT+T+SYYRGA GII+VYD+T   +F N+ + W + ID ++ ++D  ++LVGNK 
Sbjct: 61  GQERFRTITTSYYRGAMGIILVYDITDEKSFENIKN-WMRNIDEHA-SEDVERMLVGNKC 118

Query: 130 D 130
           D
Sbjct: 119 D 119

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  181 bits (461), Expect = 2e-59
 Identities = 79/120 (65%), Positives = 93/120 (77%), Gaps = 3/120 (2%)

Query: 12  YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70
           YLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWDTAG
Sbjct: 1   YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAG 60

Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           QERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y  +++  KLLVGNK D
Sbjct: 61  QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLQEIDRY-ASENVNKLLVGNKCD 118

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  180 bits (459), Expect = 3e-59
 Identities = 69/118 (58%), Positives = 86/118 (72%), Gaps = 3/118 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FK++LIGDSGVGK++LLL F  + F E    TIGVDFK K + + GKK+KL IWDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           RFR++TSSYYRGA G I+VYDVT R++F NL   W  E+  Y+   +   +LVGNK D
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDK-WLNELKEYA-PPNIPIILVGNKSD 116

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  173 bits (440), Expect = 3e-56
 Identities = 65/117 (55%), Positives = 83/117 (70%), Gaps = 3/117 (2%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+L+GD GVGKS+LL+ FT + F EE  PTIGVDF  K + + GK +KL IWDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           FR L   YYRGAQG ++VYD+T RD+F N+   W +EI  ++   +   +LVGNK D
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKK-WLEEILRHADE-NVPIVLVGNKCD 115

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  161 bits (410), Expect = 1e-51
 Identities = 63/121 (52%), Positives = 88/121 (72%), Gaps = 3/121 (2%)

Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTA 69
           DYLFK++LIGDSGVGKS LL  FT + F   S  TIGV+F  + + + GK +K  IWDTA
Sbjct: 1   DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTA 60

Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQER+R +TS+YYRGA G ++VYD+T++ TF N+ + W KE+  ++ + + + +LVGNK 
Sbjct: 61  GQERYRAITSAYYRGAVGALLVYDITKKSTFENV-ERWLKELRDHA-DSNIVIMLVGNKS 118

Query: 130 D 130
           D
Sbjct: 119 D 119

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  156 bits (397), Expect = 2e-49
 Identities = 72/125 (57%), Positives = 95/125 (76%), Gaps = 6/125 (4%)

Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIW 66
           +++D+LFKLL+IGDSGVGKS+LLL F  +TF      TIGVDFKI+ V + G+++KL IW
Sbjct: 1   RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIW 60

Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLV 125
           DTAGQERFRT+TS+YYRG  G+I+VYDVT  ++F N+   W +EI+    N D + K+LV
Sbjct: 61  DTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKR-WLQEIE---QNCDDVCKVLV 116

Query: 126 GNKVD 130
           GNK D
Sbjct: 117 GNKND 121

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  145 bits (368), Expect = 2e-45
 Identities = 63/121 (52%), Positives = 86/121 (71%), Gaps = 3/121 (2%)

Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
           D+LFK++LIGDS VGK+ ++  F S TF E    TIGVDF +K + + GK++KL IWDTA
Sbjct: 1   DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTA 60

Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQERFRT+T SYYR A G I+ YD+TRR +F ++   W +E++ Y    + + LL+GNK 
Sbjct: 61  GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPH-WIEEVEKY-GASNVVLLLIGNKC 118

Query: 130 D 130
           D
Sbjct: 119 D 119

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  143 bits (362), Expect = 2e-44
 Identities = 63/125 (50%), Positives = 90/125 (72%), Gaps = 3/125 (2%)

Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIW 66
           +++D+LFK++LIG++GVGK+ L+  FT   F      TIGVDF IK V + G+K+KL IW
Sbjct: 2   EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIW 61

Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
           DTAGQERFR++T SYYR A  +I+ YD+T  ++F  L + W +EI+ Y+ N+  I +LVG
Sbjct: 62  DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPE-WLREIEQYANNK-VITILVG 119

Query: 127 NKVDK 131
           NK+D 
Sbjct: 120 NKIDL 124

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  143 bits (362), Expect = 2e-44
 Identities = 62/122 (50%), Positives = 87/122 (71%), Gaps = 3/122 (2%)

Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDT 68
           + YLFK ++IGD+GVGKS LLL FT   F+ +   TIGV+F  + + + GK++KL IWDT
Sbjct: 1   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 60

Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQE FR++T SYYRGA G ++VYD+TRR+TF +L   W ++   +S +   I +L+GNK
Sbjct: 61  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQHSNSNMTI-MLIGNK 118

Query: 129 VD 130
            D
Sbjct: 119 CD 120

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  135 bits (342), Expect = 2e-41
 Identities = 53/118 (44%), Positives = 71/118 (60%), Gaps = 3/118 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+GDS VGKS+++L F  + F E    TIG  F  + V L    +K  IWDTAGQE
Sbjct: 2   FKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE 61

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           R+R+L   YYRGA   I+VYD+T  ++F   A  W KE+  +    + +  L GNK D
Sbjct: 62  RYRSLAPMYYRGAAAAIVVYDITSEESFEK-AKSWVKELQEHG-PPNIVIALAGNKAD 117

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  135 bits (340), Expect = 8e-41
 Identities = 66/117 (56%), Positives = 90/117 (76%), Gaps = 3/117 (2%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           ++++IG  GVGK++L+  FT DTF E    T+GVDFKIK V L GKK++L IWDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           F ++TS+YYR A+GII+VYD+T+++TF +L   W K ID Y++ +D   LLVGNK+D
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYAS-EDAELLLVGNKLD 116

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  133 bits (337), Expect = 1e-40
 Identities = 62/120 (51%), Positives = 81/120 (67%), Gaps = 3/120 (2%)

Query: 12  YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAG 70
           Y+FK ++IGD GVGKS LL  FT   F    P TIGV+F  + + + G+K+KL IWDTAG
Sbjct: 1   YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG 60

Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           QERFR +T SYYRGA G +MVYD+TRR T+ +L+       +L  TN + +  L+GNK D
Sbjct: 61  QERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPNTVIFLIGNKAD 118

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  133 bits (335), Expect = 8e-40
 Identities = 61/122 (50%), Positives = 86/122 (70%), Gaps = 3/122 (2%)

Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDT 68
           + YLFK ++IGD+GVGKS LLL FT   F+ +   TIGV+F  + + +  K +KL IWDT
Sbjct: 3   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 62

Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQE FR++T SYYRGA G ++VYD+TRR+TF +LA  W ++   ++ N +   +L+GNK
Sbjct: 63  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHA-NANMTIMLIGNK 120

Query: 129 VD 130
            D
Sbjct: 121 CD 122

Length = 210

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  132 bits (335), Expect = 9e-40
 Identities = 57/130 (43%), Positives = 87/130 (66%), Gaps = 8/130 (6%)

Query: 12  YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALG-GKKMKLAIWDTA 69
           Y F+L++IGDS VGKS+LL  FT   F E+S PT+GVDF  + + +  G ++KL +WDTA
Sbjct: 1   YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTA 60

Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQERFR++T SYYR + G+++V+D+T R++F ++ D W +E   +      + +LVG+K 
Sbjct: 61  GQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHD-WLEEARSHIQPHRPVFILVGHKC 119

Query: 130 D-----KVCP 134
           D     +V  
Sbjct: 120 DLESQRQVTR 129

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  133 bits (335), Expect = 9e-40
 Identities = 61/124 (49%), Positives = 88/124 (70%), Gaps = 3/124 (2%)

Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIW 66
            E+DYLFK++LIGDSGVGKS +L  FT + F  E   TIGV+F  + + + GK +K  IW
Sbjct: 7   HEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIW 66

Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
           DTAGQER+R +TS+YYRGA G ++VYD+T+R TF N+   W +E+  ++ + + + ++ G
Sbjct: 67  DTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQR-WLRELRDHA-DSNIVIMMAG 124

Query: 127 NKVD 130
           NK D
Sbjct: 125 NKSD 128

Length = 216

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  126 bits (319), Expect = 5e-38
 Identities = 59/119 (49%), Positives = 81/119 (68%), Gaps = 3/119 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FK L+IG +G GKS LL  F  + F++ S  TIGV+F  + V +GGK +KL IWDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           RFR++T SYYRGA G ++VYD+T R++F  L + W  +    ++  D + +LVGNK D 
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTN-WLTDARTLAS-PDIVIILVGNKKDL 117

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  122 bits (308), Expect = 3e-36
 Identities = 53/119 (44%), Positives = 72/119 (60%), Gaps = 5/119 (4%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FK++L+G+  VGK++L+L +  + F E    T    F  K V +GGK++ LAIWDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL-LVGNKVD 130
           R+  L   YYR A G I+VYD+T  D+F      W KE  L     + I L +VGNK+D
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQK-VKKWIKE--LKQMRGNNISLVIVGNKID 116

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  121 bits (306), Expect = 5e-36
 Identities = 57/119 (47%), Positives = 84/119 (70%), Gaps = 3/119 (2%)

Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           +FKLL+IG+S VGK++ L  +  D+F      T+G+DFK+K V    K++KL IWDTAGQ
Sbjct: 1   MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQ 60

Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           ER+RT+T++YYRGA G I++YD+T  ++F  + D W+ +I  YS +   + +LVGNK D
Sbjct: 61  ERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQV-ILVGNKCD 117

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  120 bits (302), Expect = 3e-35
 Identities = 51/119 (42%), Positives = 76/119 (63%), Gaps = 3/119 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FK+++IGDS VGK+ L   F +  F E    TIGVDF+ + V + G+++K+ +WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 73  RFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           RFR ++   YYR    ++ VYDVT   +F +L   W +E + +S   +  ++LVGNK D
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLP-SWIEECEQHSLPNEVPRILVGNKCD 120

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  118 bits (298), Expect = 7e-35
 Identities = 57/119 (47%), Positives = 83/119 (69%), Gaps = 3/119 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           F+LLLIGDSGVGK+ LL  FT + F      TIGVDFK+K + + G K+++ IWDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           R++T+T  YYR AQGI +VYD++   ++ ++   W  ++D Y+  +   K+L+GNK D+
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMK-WVSDVDEYA-PEGVQKILIGNKADE 117

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  118 bits (298), Expect = 9e-35
 Identities = 50/118 (42%), Positives = 72/118 (61%), Gaps = 3/118 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            KL+ +GD  VGK++++  F  DTF+     TIG+DF  K + +  K ++L +WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           RFR+L  SY R +   ++VYD+T R +F N  D W  ++       D I +LVGNK D
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNT-DKWIDDVRD-ERGNDVIIVLVGNKTD 116

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  116 bits (293), Expect = 1e-33
 Identities = 54/122 (44%), Positives = 75/122 (61%), Gaps = 2/122 (1%)

Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
           F   FK++++GD GVGK+TLL     D F E   PTIG     K +    + +KL +WDT
Sbjct: 2   FMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDT 61

Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQE +R+L   YYRGA GI++VYD T R++   L + W +E+   + +   I LLVGNK
Sbjct: 62  AGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPI-LLVGNK 120

Query: 129 VD 130
           +D
Sbjct: 121 ID 122

Length = 219

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  113 bits (283), Expect = 3e-32
 Identities = 55/119 (46%), Positives = 78/119 (65%), Gaps = 4/119 (3%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           FK++L+GDSGVGK+ LL+ F    F       T+G+ F  K V + G K+KL IWDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           ERFR++T +YYR A  ++++YDVT + +F N+   W  EI  Y+   D + +L+GNK D
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNI-RAWLTEILEYA-QSDVVIMLLGNKAD 117

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  108 bits (272), Expect = 9e-31
 Identities = 54/134 (40%), Positives = 82/134 (61%), Gaps = 16/134 (11%)

Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHV--------ALGGKK 60
           +DYL KLL +GDSGVGK+T L  +T + F  +   T+G+DF+ K V           GK 
Sbjct: 1   YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKA 60

Query: 61  MK--LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI--DLYST 116
            +  L +WDTAGQERFR+LT++++R A G ++++D+T   +F N+ + W  ++    Y  
Sbjct: 61  FRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRN-WMSQLQAHAYCE 119

Query: 117 NQDCIKLLVGNKVD 130
           N D +  L+GNK D
Sbjct: 120 NPDIV--LIGNKAD 131

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  108 bits (272), Expect = 1e-30
 Identities = 48/122 (39%), Positives = 77/122 (63%), Gaps = 5/122 (4%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K++++GDSGVGK++L+  + +  F  +   TIG DF  K V +  + + L IWDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
           RF++L  ++YRGA   ++VYDVT   +F +L D W  E  + ++ +D      +++GNK+
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESL-DSWRDEFLIQASPRDPENFPFVVLGNKI 119

Query: 130 DK 131
           D 
Sbjct: 120 DL 121

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  108 bits (271), Expect = 1e-30
 Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 8/125 (6%)

Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP---TIGVDFKIKHVALGGKKMKLA 64
           + +DYL K LL+GDS VGK  +L S    + E  SP    +G+D+K   + L G+++KL 
Sbjct: 1   KAYDYLLKFLLVGDSDVGKGEILASLQDGSTE--SPYGYNMGIDYKTTTILLDGRRVKLQ 58

Query: 65  IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL 124
           +WDT+GQ RF T+  SY RGAQGII+VYD+T R +F  + D W KEID ++      K+L
Sbjct: 59  LWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGI-DRWIKEIDEHAPG--VPKIL 115

Query: 125 VGNKV 129
           VGN++
Sbjct: 116 VGNRL 120

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  105 bits (263), Expect = 5e-29
 Identities = 48/122 (39%), Positives = 69/122 (56%), Gaps = 6/122 (4%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVAL-GGKKMKLAIWDTAGQ 71
           FK+L+IGD GVGK++++  +    F +    TIGVDF +K +       ++L +WD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEID---LYSTNQDCIKLLVGNK 128
           ERF  +T  YY+GA G I+V+DVTR  TF      W  ++D        +    LL+ NK
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEA-VLKWKADLDSKVTLPNGEPIPALLLANK 119

Query: 129 VD 130
            D
Sbjct: 120 CD 121

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  101 bits (254), Expect = 4e-28
 Identities = 48/122 (39%), Positives = 77/122 (63%), Gaps = 5/122 (4%)

Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++L+GD GVGKS+L+  + ++ F+  L  TIGV+F  K + + G  + L IWDTAGQ
Sbjct: 5   LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64

Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
           ERFR+L + +YRG+   ++ + V    +F NL+  W KE   Y+  ++      +++GNK
Sbjct: 65  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILGNK 123

Query: 129 VD 130
           +D
Sbjct: 124 ID 125

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 94.1 bits (235), Expect = 3e-25
 Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 4/117 (3%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K++++GD  VGK+ LL+S+T++ F  E  PT+  D    +V + GK++ L +WDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L    Y      ++ + V    +F N+   W  EI  Y    +   +LVG K+D
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHY--CPNVPIILVGTKID 115

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 93.8 bits (233), Expect = 4e-25
 Identities = 50/117 (42%), Positives = 70/117 (59%), Gaps = 4/117 (3%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVA-LGGKKMKLAIWDTAGQER 73
           K++L+GDS VGKS L+  F  D +E    +       KH A   GK + +  WDTAGQER
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           F+T+ +SYY  A   I+V+DVTR+ T+ NL+  W +E+  Y     CI  +V NK+D
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSK-WYEELREYRPEIPCI--VVANKID 115

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score = 91.4 bits (228), Expect = 3e-24
 Identities = 47/117 (40%), Positives = 65/117 (55%), Gaps = 3/117 (2%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++G  GVGKS L + F S  F EE  PTI  D   K + + G+   L I DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           F  +   Y R   G I+VY +T R++F  + +I  ++I      +D   +LVGNK D
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIR-EQILRVKDKEDVPIVLVGNKCD 115

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 90.5 bits (225), Expect = 9e-24
 Identities = 37/125 (29%), Positives = 71/125 (56%), Gaps = 6/125 (4%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K++ +G+SGVGKS ++  +    F  +  PTIG+D+ +K V++  K++++  +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ----DCIKLLVGNKV 129
           +  + + +Y+  QG+++VYDVT R +F  L D W KE+           + + ++  NK+
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANKI 120

Query: 130 DKVCP 134
           D    
Sbjct: 121 DLTKH 125

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 91.5 bits (227), Expect = 1e-23
 Identities = 43/117 (36%), Positives = 67/117 (57%), Gaps = 8/117 (6%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           K++L+GD  VGK++LL  +    F++   T+G  F +K          ++IWDTAG+E+F
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQ----WGPYNISIWDTAGREQF 57

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVD 130
             L S Y RGA  +I+ YDV+   +   L     + + L  T N+DC+  +VGNK+D
Sbjct: 58  HGLGSMYCRGAAAVILTYDVSNVQSLEEL---EDRFLGLTDTANEDCLFAVVGNKLD 111

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 89.6 bits (222), Expect = 3e-23
 Identities = 52/130 (40%), Positives = 75/130 (57%), Gaps = 10/130 (7%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K++++GD  VGK+ L+  F  D F++    TIGVDF+++   + G    L +WDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTN----LADIWAKEIDLYSTNQDCIKLLVGNKV 129
           F+ + S+YYRGAQ II+V+D+T   +  +    L D   KE D  S     +  LVG K 
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDA-LKENDPSS----VLLFLVGTKK 116

Query: 130 DKVCPWRLFL 139
           D   P +  L
Sbjct: 117 DLSSPAQYAL 126

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 89.2 bits (222), Expect = 3e-23
 Identities = 38/116 (32%), Positives = 64/116 (55%), Gaps = 4/116 (3%)

Query: 16  LLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           L+++GD  VGK+ LL+ +T++ F E+  PT+  ++    V + GK ++L +WDTAGQE +
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDY 59

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
             L    Y      ++ + V    +F N+ + W  E+  +  N   I  LVG K+D
Sbjct: 60  DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNVPII--LVGTKLD 113

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 89.0 bits (221), Expect = 1e-22
 Identities = 45/118 (38%), Positives = 67/118 (56%), Gaps = 4/118 (3%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+GD GVGK+T +    +  FE +  PT+GV+            +   +WDTAGQE
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +F  L   YY   Q  I+++DVT R T+ N+ + W +  D+    ++   +LVGNKVD
Sbjct: 70  KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPN-WHR--DIVRVCENIPIVLVGNKVD 124

Length = 215

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 87.2 bits (217), Expect = 2e-22
 Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 3/118 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L + F    F ++  PTI  D   K + + G+   L I DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            F  +   Y R  +G ++VY +T R +F  +     + + +   +   I +LVGNK D
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPI-VLVGNKCD 116

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 86.5 bits (215), Expect = 3e-22
 Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 3/118 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L + F    F +E  PTI  D   K + + G+   L I DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            F  +   Y R  +G ++VY +T R +F  +A    + + +   +   I +LVGNK D
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPI-VLVGNKCD 118

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 86.3 bits (214), Expect = 4e-22
 Identities = 43/119 (36%), Positives = 72/119 (60%), Gaps = 6/119 (5%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVAL--GGKKMKLAIWDTAGQ 71
           K++++G+  VGKS+++  F    F ++   TIGVDF  K + L    + ++L +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           E F  +T +YYRGAQ  I+V+  T R++F  +   W ++++  +   D   +LV  K+D
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIES-WKEKVE--AECGDIPMVLVQTKID 117

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 86.8 bits (215), Expect = 5e-22
 Identities = 42/118 (35%), Positives = 63/118 (53%), Gaps = 5/118 (4%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           K++++G   VGK++L+  +    F       TIG  F  K + +G + + L IWDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           R+  ++  YYRGA+  I+ YD+T   +F   A  W KE  L +  + C   L G K D
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFER-AKFWVKE--LQNLEEHCKIYLCGTKSD 116

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 86.7 bits (215), Expect = 9e-22
 Identities = 51/136 (37%), Positives = 70/136 (51%), Gaps = 14/136 (10%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGV-----DFKIKHV 54
           MA    Q      FKL+++GD G GK+T +    +  FE +  PTIGV     DF     
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF---FT 57

Query: 55  ALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLY 114
             G  K++   WDTAGQE+F  L   YY   Q  I+++DVT R T+ N+   W +  DL 
Sbjct: 58  NCG--KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHR--DLC 112

Query: 115 STNQDCIKLLVGNKVD 130
              ++   +L GNKVD
Sbjct: 113 RVCENIPIVLCGNKVD 128

Length = 219

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 85.0 bits (211), Expect = 1e-21
 Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 6/119 (5%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVD-FKIKHVALGGKKMKLAIWDTAGQ 71
           FKL+L+GD G GK+T +    +  FE +   T+GV+   +      GK ++  +WDTAGQ
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGK-IRFNVWDTAGQ 59

Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           E+F  L   YY   Q  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD
Sbjct: 60  EKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 115

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 85.5 bits (212), Expect = 1e-21
 Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 15/127 (11%)

Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
           D   K++++GD G GK+ LL+ +   +F EE  PT+  ++        GK ++LA+WDTA
Sbjct: 1   DLKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTA 60

Query: 70  GQE---RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---L 123
           GQE   R R L+   Y     I++ Y V    +  N+ D W  E+     N  C     +
Sbjct: 61  GQEDYDRLRPLS---YPDVDVILICYSVDNPTSLDNVEDKWYPEV-----NHFCPGTPIV 112

Query: 124 LVGNKVD 130
           LVG K D
Sbjct: 113 LVGLKTD 119

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 84.0 bits (208), Expect = 3e-21
 Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 10/125 (8%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
            K++++GD  VGKSTLL     +     E  P    ++    +   GK  K  + DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK----LLVGN 127
           E +  +   YYR  +  + V+D+        L      E                +LVGN
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDI----VILVLDVEEILEKQTKEIIHHAESGVPIILVGN 117

Query: 128 KVDKV 132
           K+D  
Sbjct: 118 KIDLR 122

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 83.6 bits (207), Expect = 4e-21
 Identities = 45/119 (37%), Positives = 70/119 (58%), Gaps = 5/119 (4%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K++++G  GVGKS L L F  D F E+  PT   D   K V L G++++L I DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQLNILDTAGQE 59

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL-LVGNKVD 130
            +  +  +Y+R  +G ++V+ +T  ++FT LA+   + + +     D + L LVGNK D
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRV--KEDDNVPLLLVGNKCD 116

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 79.0 bits (195), Expect = 2e-19
 Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 11/123 (8%)

Query: 17  LLIGDSGVGKSTLLLSFTSDTFEELSPTIG--VDFKIKHVALGGKKMKLAIWDTAGQERF 74
           +++G  GVGKS+LL +       E+S   G   D  +    L   K+KL + DT G + F
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEF 60

Query: 75  -----RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
                  L     RGA  I++V D T R++  +   +  + +           +LVGNK+
Sbjct: 61  GGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIP----IILVGNKI 116

Query: 130 DKV 132
           D +
Sbjct: 117 DLL 119

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 79.0 bits (194), Expect = 3e-19
 Identities = 44/96 (45%), Positives = 58/96 (60%), Gaps = 3/96 (3%)

Query: 36  DTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 94
           DTF+     TIG+DF  K + L    ++L +WDTAGQERFR+L  SY R +   I+VYD+
Sbjct: 3   DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI 62

Query: 95  TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           T R +F N    W ++I L    +D I  LVGNK D
Sbjct: 63  TNRQSFENTTK-WIQDI-LNERGKDVIIALVGNKTD 96

Length = 176

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 79.1 bits (195), Expect = 6e-19
 Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 5/121 (4%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVAL-GGKKMKLAIWDTAGQ 71
            K++++GD   GK++L+  F  + F +    TIG+DF  + + L G   + L +WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC--IKLLVGNKV 129
           +    +   Y  GAQ + +VYD+T   +F NL D W   +   +   +     +LVGNK 
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLED-WLSVVKKVNEESETKPKMVLVGNKT 119

Query: 130 D 130
           D
Sbjct: 120 D 120

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 78.2 bits (193), Expect = 6e-19
 Identities = 43/120 (35%), Positives = 69/120 (57%), Gaps = 10/120 (8%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQE- 72
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 61

Query: 73  --RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
             R R L+   Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D
Sbjct: 62  YDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 116

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 77.6 bits (191), Expect = 7e-19
 Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 3/118 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +K++++G  GVGKS L + F S TF E+  PTI  DF  K + +      L I DTAG E
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +F ++   Y +  QG I+VY +  + TF ++  +   +I      +    +LVGNKVD
Sbjct: 61  QFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPM-RDQIVRVKGYEKVPIILVGNKVD 117

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 77.4 bits (191), Expect = 9e-19
 Identities = 44/125 (35%), Positives = 64/125 (51%), Gaps = 17/125 (13%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L + F    F  +  PTI  D   K   + G+  +L I DTAGQE
Sbjct: 3   YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWARLDILDTAGQE 61

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK-------LLV 125
            F  +   Y R  +G ++V+ VT R +F        +E+D + T    +K       +LV
Sbjct: 62  EFSAMREQYMRTGEGFLLVFSVTDRGSF--------EEVDKFHTQILRVKDRDEFPMILV 113

Query: 126 GNKVD 130
           GNK D
Sbjct: 114 GNKAD 118

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 77.2 bits (190), Expect = 1e-18
 Identities = 44/118 (37%), Positives = 69/118 (58%), Gaps = 3/118 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L + F    F E+  PTI   ++ K V + G++  L I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +F  +   Y +  QG ++VY +T + TF +L D+  + + +  T +D   +LVGNK D
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCD 117

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 76.8 bits (189), Expect = 3e-18
 Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 11/124 (8%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD GVGK+ L +    + F E   PTI   ++ K V + G+   L + DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEE 59

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIW-----AKEIDLYSTNQDCIKLLVGNK 128
           +  L   + R  +G I+VY +T R TF  +          K+     +  D   ++VGNK
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKD----ESAADVPIMIVGNK 115

Query: 129 VDKV 132
            DKV
Sbjct: 116 CDKV 119

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 75.5 bits (186), Expect = 8e-18
 Identities = 36/117 (30%), Positives = 67/117 (57%), Gaps = 4/117 (3%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K+ L+GD+ +GK++L++ +    F EE   T+GV+F  K +++ G ++  +IWD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           F  +     + A  I+ ++D+TR+ T  ++ + W ++      N+  I +LVG K D
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKE-WYRQA--RGFNKTAIPILVGTKYD 115

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 74.5 bits (183), Expect = 1e-17
 Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 3/118 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L + F    F ++  PTI  D   K + +  ++  L I DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +F  +   Y +  QG  +VY +T + +F +L D+  + + +  T +D   +LVGNK D
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDT-EDVPMILVGNKCD 117

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 74.2 bits (183), Expect = 2e-17
 Identities = 44/117 (37%), Positives = 61/117 (52%), Gaps = 3/117 (2%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K+ ++G   VGKS+L + F    F E   PTI   F  K +   G++  L I DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L   Y  G  G I+VY VT R +F  +  I+ K +D+       I +LVGNK D
Sbjct: 62  YSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPI-VLVGNKSD 117

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 73.0 bits (179), Expect = 6e-17
 Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 3/118 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +K++++G  GVGKS + + F S +F +   PTI   +K +   +  +   L I DTAGQ 
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQ-ARIDNEPALLDILDTAGQA 61

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            F  +   Y R  +G I+ Y VT R +F   ++ + + I      +D   +LVGNKVD
Sbjct: 62  EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASE-FKELITRVRLTEDIPLVLVGNKVD 118

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 72.5 bits (178), Expect = 7e-17
 Identities = 40/118 (33%), Positives = 63/118 (53%), Gaps = 3/118 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI  D   K V + G+   L I DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +  R +F ++   + ++I     + D   +LVGNK D
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDI-HTYREQIKRVKDSDDVPMVLVGNKCD 117

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 71.4 bits (175), Expect = 2e-16
 Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 6/121 (4%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSD--TFEE-LSPTIGVDFKIKHVAL--GGKKMKLAIWDTA 69
           +  ++GD  VGKS L+  F SD  TF++  + T G D  +K V +      ++L I+D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQE F  +  + +     + +VYDVT   +F N +  W   +  +S       +LVGNK 
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSR-WINRVRTHSHGLHTPGVLVGNKC 120

Query: 130 D 130
           D
Sbjct: 121 D 121

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 71.8 bits (176), Expect = 3e-16
 Identities = 43/119 (36%), Positives = 65/119 (54%), Gaps = 5/119 (4%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L + F  + F +E  PTI   ++ K   +  +   L I DTAGQE
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVIDEETCLLDILDTAGQE 64

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL-LVGNKVD 130
            +  +   Y R  QG + VY +T R +F  +A    +E  L   ++D + + LVGNK D
Sbjct: 65  EYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASF--REQILRVKDKDRVPMILVGNKCD 121

Length = 189

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 70.7 bits (174), Expect = 4e-16
 Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 19/126 (15%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGV---DFKIKHVALGGKKMKLAIWDTAGQ 71
           ++L++G  G GK+T+L            PTIG      + K+V       K  +WD  GQ
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNV-------KFTVWDVGGQ 53

Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI--DLYSTNQ--DCIKLLVGN 127
           ++ R L   YY    G+I V D + R+         AK     L +  +      L++ N
Sbjct: 54  DKIRPLWKHYYENTDGLIFVVDSSDRERI-----EEAKNELHKLLNEEELKGAPLLILAN 108

Query: 128 KVDKVC 133
           K D   
Sbjct: 109 KQDLPG 114

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 71.2 bits (174), Expect = 5e-16
 Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 8/115 (6%)

Query: 19  IGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKMKLAIWDTAGQERFR 75
           +GD G GK+T +    +  FE+    T+GV+    + H   G   ++  +WDTAGQE+F 
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PIRFNVWDTAGQEKFG 58

Query: 76  TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            L   YY   Q  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD
Sbjct: 59  GLRDGYYIQGQCAIIMFDVTARVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 110

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 70.2 bits (172), Expect = 9e-16
 Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 4/117 (3%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK++LL  FT   F EE  PT+  ++ +    + GK ++LA+WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEE 61

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L    Y  A  I++ + +   D+  N+   W +E+  Y  N   I  LVG K D
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVI--LVGLKKD 116

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 69.7 bits (171), Expect = 1e-15
 Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 4/117 (3%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K +L+GD  VGK++L++S+T++ +  E  PT   +F +  V + GK ++L + DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVV-VLVDGKPVRLQLCDTAGQDE 60

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           F  L    Y      ++ + V    +F N+++ W  EI  ++     I  LVG + D
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPII--LVGTQAD 115

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 69.5 bits (170), Expect = 1e-15
 Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 4/117 (3%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K + +GD  VGK+ +L+S+TS+TF  +  PT+  +F   +V + G  + L +WDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGNTVNLGLWDTAGQED 61

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L    YRGA   ++ + +  + ++ N+   W  E+  Y+     +  LVG K+D
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIV--LVGTKLD 116

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 68.3 bits (167), Expect = 3e-15
 Identities = 39/118 (33%), Positives = 66/118 (55%), Gaps = 3/118 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +K++++G  GVGKS L + F  + F E   PTI   ++ K V + G++  L I DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYR-KQVEIDGRQCDLEILDTAGTE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +F  +   Y +  QG ++VY VT   +   L ++  + + +  ++   + +LVGNK D
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPM-VLVGNKAD 117

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 68.0 bits (167), Expect = 5e-15
 Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 13/121 (10%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+T+L            PTIG  F ++ V    K +K  +WD  GQE 
Sbjct: 15  MRILILGLDNAGKTTILYKLKLGEIVTTIPTIG--FNVETVTY--KNVKFTVWDVGGQES 70

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTF----TNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
            R L  +Y+     +I V D   RD        L  +  +E        D   L++ NK 
Sbjct: 71  LRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEE-----ELADAPLLILANKQ 125

Query: 130 D 130
           D
Sbjct: 126 D 126

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 67.3 bits (164), Expect = 8e-15
 Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 4/118 (3%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+ +D F EE  PT+  D     V +GGK+  L ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQE 59

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    Y      ++ + V    +F N+ + W  E+  Y+ N     LL+G ++D
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN--VPYLLIGTQID 115

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 68.0 bits (166), Expect = 3e-14
 Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 15/111 (13%)

Query: 15  KLLLIGDSGVGKSTLL-LSFTSDTFEELSPTIGVDFKIKHVALGG-------------KK 60
           ++L++GDSGVGKS+L+ L     +      TIG    +KH+  G              + 
Sbjct: 23  RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI 111
             + +WD +G ER++   S +Y    G+I V+D+++R T T+L   WA E+
Sbjct: 83  FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQK-WASEV 132

Length = 334

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 65.0 bits (159), Expect = 5e-14
 Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 16/119 (13%)

Query: 18  LIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT 76
           L+G    GK+TL+    S  F E+  PT+G  F ++ V  G   +K  +WD  GQ RFR+
Sbjct: 4   LVGLQNSGKTTLVNVIASGQFSEDTIPTVG--FNMRKVTKGNVTIK--VWDLGGQPRFRS 59

Query: 77  LTSSYYRGAQGIIMVYDVTRRDTF----TNLADIWAKEIDLYSTNQDCIKLLV-GNKVD 130
           +   Y RG   I+ V D   R+        L D+  K       + + I LLV GNK D
Sbjct: 60  MWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEK------PSLEGIPLLVLGNKND 112

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 65.3 bits (159), Expect = 6e-14
 Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 4/117 (3%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQED 61

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L    Y      ++ + V    +F N+ + W  EI  +        LLVG ++D
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPF--LLVGTQID 116

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 63.2 bits (154), Expect = 8e-14
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 5/117 (4%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K+++IGD G GKS+LL       F  E     G    +  + + G    L IWD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADI--WAKEIDLYSTNQDCIKLLVGNK 128
            +     + + A  I++VYD+T R++   ++ +  W   +         I  LVGNK
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVI--LVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 64.4 bits (157), Expect = 1e-13
 Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 4/117 (3%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K +++GD  VGK+ LL+S+T++ F  E  PT+  D    +V + GK + L +WDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 61

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 116

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 64.6 bits (157), Expect = 1e-13
 Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 4/117 (3%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K +++GD  VGK+ LL+ +T++ F +E  PT+  D      A+ G+ + L +WDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV-FDNYSAQTAVDGRTVSLNLWDTAGQEE 63

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L +  Y      I+ + +    ++ N+   W  E+  +  N     LLVG K D
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPI--LLVGTKKD 118

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 64.1 bits (156), Expect = 2e-13
 Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 6/118 (5%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K++++GD   GK++LL  FT   F ++  PT+  ++ I  + + G  ++L++WDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-IHDIFVDGLAVELSLWDTAGQEE 60

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL-LVGNKVD 130
           F  L S  Y     I++ + V   D+  N+   W  EI     +   +KL LV  K D
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEI---RHHCPGVKLVLVALKCD 115

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 62.5 bits (152), Expect = 5e-13
 Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 3/119 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +++++ G  GVGKS+L+L F   TF E   PTI   ++ + ++       L I DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISCSKSICTLQITDTTGSH 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTN-QDCIKLLVGNKVD 130
           +F  +           I+VY +T + +   L  I+    ++   N +    +LVGNK D
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCD 119

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 60.8 bits (148), Expect = 2e-12
 Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 21/128 (16%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSP------TIGVDFKIKHVALGGKKMKLAIWDT 68
           +++LIGD GVGKS+L++S  S+ F E  P      TI  D   + V          I DT
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVP-------TTIVDT 56

Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLV 125
           + + + R   ++  R A  I +VY V R  T   +   W   I      +  +K   +LV
Sbjct: 57  SSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLI-----RRLGVKVPIILV 111

Query: 126 GNKVDKVC 133
           GNK D   
Sbjct: 112 GNKSDLRD 119

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 59.2 bits (144), Expect = 8e-12
 Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 6/120 (5%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K+ ++G SGVGKS L + F +  F  E  P +   +  + V + G+++ L I DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYS-RQVTIDGEQVSLEIQDTPGQQQ 59

Query: 74  FRT--LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK-LLVGNKVD 130
                      R A G ++VY +T R +F  ++ +    I         I  +LVGNK D
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQL-IREIKKRDGEIPVILVGNKAD 118

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 59.3 bits (143), Expect = 9e-12
 Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 4/117 (3%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K++++GDS  GK+ LL  F  D F E   PT+  ++      +  ++++L++WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS-FEIDTQRIELSLWDTSGSPY 65

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  +    Y  +  +++ +D++R +T  ++   W  EI  +  N     LLVG K D
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKM--LLVGCKSD 120

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 59.5 bits (144), Expect = 1e-11
 Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 29/146 (19%)

Query: 15  KLLLIGDSGVGKSTLL-LSFTSDTFEELSPTIGVDFKIKHVALGG-----KKMKLAIWDT 68
           K+L++GDSGVGKS+L+ L   +      S T+G    ++H   G      K   + +WD 
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTPEEKTFYVELWDV 61

Query: 69  AGQ----ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI---DLYS-----T 116
            G     E  ++  + +Y    GII V+D+T + +  NL   W+ E    D +      T
Sbjct: 62  GGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYR-WSLEALNRDTFPAGLLVT 120

Query: 117 NQDCIK----------LLVGNKVDKV 132
           N D             L++G K+D++
Sbjct: 121 NGDYDSEQFAGNPVPLLVIGTKLDQI 146

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 57.7 bits (139), Expect = 3e-11
 Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 11/119 (9%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           +++ +G  G GK+T+L     D F +  PTIG  F ++ V    K +K  IWD  G+ + 
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIG--FNVETVEY--KNLKFTIWDVGGKHKL 56

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAK---EIDLYSTNQDCIKLLVGNKVD 130
           R L   YY   Q ++ V D + RD  +      AK   E +L    +D + L+  NK D
Sbjct: 57  RPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKEL----RDALLLIFANKQD 111

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 57.8 bits (140), Expect = 3e-11
 Identities = 33/117 (28%), Positives = 63/117 (53%), Gaps = 4/117 (3%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K++L+GDS  GK+ LL  F  D+F E   PT+  ++      +  ++++L++WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTAS-FEVDKQRIELSLWDTSGSPY 61

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  +    Y  +  +++ +D++R +T  ++   W  E+  +  N     LLVG K D
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPV--LLVGCKSD 116

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 57.0 bits (138), Expect = 6e-11
 Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 11/128 (8%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGV---DFKIKHVALGGKKMKLAIWDTAG 70
           KL+L+G  GVGK++L      + F+     T G+   D+KI   A   KK++L +WD  G
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIP--APERKKIRLNVWDFGG 60

Query: 71  QERFRTLTSSYYRGAQGI-IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           QE +   T  ++  ++ + ++V+D+   D  + +   W ++I  +      I  LVG  +
Sbjct: 61  QEIYHA-THQFFLTSRSLYLLVFDLRTGDEVSRV-PYWLRQIKAFGGVSPVI--LVGTHI 116

Query: 130 DKVCPWRL 137
           D+ C   +
Sbjct: 117 DESCDEDI 124

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 57.0 bits (138), Expect = 6e-11
 Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 4/88 (4%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           +K++++G    GK+T+L  F        SPTIG + +     +  K ++  +WD  GQE 
Sbjct: 16  YKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEE----IVYKNIRFLMWDIGGQES 71

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFT 101
            R+  ++YY     +I+V D T R+   
Sbjct: 72  LRSSWNTYYTNTDAVILVIDSTDRERLP 99

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 57.1 bits (138), Expect = 7e-11
 Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 2/118 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQE 72
             ++++G    GK+T+L     + F    PT G + +   V+LG  K +    WD  GQE
Sbjct: 4   LHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQE 63

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           + R L  SY R   GI+ V D    +     A     +I  +S NQ    L++ NK D
Sbjct: 64  KLRPLWKSYTRCTDGIVFVVDSVDVERMEE-AKTELHKITKFSENQGVPVLVLANKQD 120

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 6/122 (4%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           ++++L+GDSGVGKS+L   FT+  +E+ +    G D   + V++ G++  L ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
               L  S  +     ++VY VT R +F   +++    I L    Q  D   +LVGNK D
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASEL---RIQLRRARQAEDIPIILVGNKSD 117

Query: 131 KV 132
            V
Sbjct: 118 LV 119

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 56.5 bits (136), Expect = 1e-10
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
          ++L++G    GK+T+L            PTIG  F ++ V    K +   +WD  GQ++ 
Sbjct: 15 RILMVGLDAAGKTTILYKLKLGESVTTIPTIG--FNVETVTY--KNISFTVWDVGGQDKI 70

Query: 75 RTLTSSYYRGAQGIIMVYDVTRRD 98
          R L   YY   QG+I V D   RD
Sbjct: 71 RPLWRHYYTNTQGLIFVVDSNDRD 94

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 55.6 bits (134), Expect = 2e-10
 Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 15/121 (12%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           ++L++G    GK+T+L            PT+G  F ++ V    K +K  +WD  GQ++ 
Sbjct: 11  RILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDKI 66

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTF----TNLADIWA-KEIDLYSTNQDCIKLLVGNKV 129
           R L   YY G QG+I V D   RD        L  I   +E+      +D + L+  NK 
Sbjct: 67  RPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREM------RDALLLVFANKQ 120

Query: 130 D 130
           D
Sbjct: 121 D 121

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 54.3 bits (131), Expect = 5e-10
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
          ++LL+G    GKSTLL            PT+G  F ++ + L  K + L +WD  GQE+ 
Sbjct: 1  QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVG--FNVEMLQLE-KHLSLTVWDVGGQEKM 57

Query: 75 RTLTSSYYRGAQGIIMVYDVTRR 97
          RT+   Y     G++ V D +  
Sbjct: 58 RTVWKCYLENTDGLVYVVDSSDE 80

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 52.1 bits (125), Expect = 7e-09
 Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 1/116 (0%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           +L+ +G +GVGK+ L+  F  DTFE        +   K   + G K+ + I DT+G   F
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDILDTSGSYSF 60

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
             +     +      +VY V   ++F  +  +  + +++       I ++VGNK+D
Sbjct: 61  PAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPI-VVVGNKID 115

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 52.0 bits (124), Expect = 8e-09
 Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 4/117 (3%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+L+GD   GK+ +L     D + E   PT+  ++    +    ++++L++WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPY 73

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  +    Y  +  +++ +D++R + F +    W  EI  Y  +     LL+G K D
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRI--LLIGCKTD 128

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 50.8 bits (121), Expect = 2e-08
 Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 4/117 (3%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K++++GD+  GK+ LL  F  D + E   PT+  ++      +   +++L +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTAS-FEIDKHRIELNMWDTSGSSY 61

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  +    Y  +  +++ +D++R +T  ++   W  E   +  N   +  LVG K+D
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLV--LVGCKLD 116

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 50.4 bits (120), Expect = 2e-08
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           ++L++G    GK+T+L            PTIG  F ++ V    K +   +WD  GQ++ 
Sbjct: 19  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDKI 74

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLAD 105
           R L   Y++  QG+I V D   RD      D
Sbjct: 75  RPLWRHYFQNTQGLIFVVDSNDRDRVVEARD 105

Length = 181

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           ++L++G    GK+T+L  F  +    +SPT+G  F IK +   G   KL IWD  GQ+ 
Sbjct: 15 MRILMLGLDNAGKTTILKKFNGEDISTISPTLG--FNIKTLEYNG--YKLNIWDVGGQKS 70

Query: 74 FRTLTSSYYRGAQGIIMVYDVTRR 97
           R+   +Y+     +I V D + R
Sbjct: 71 LRSYWRNYFESTDALIWVVDSSDR 94

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
          ++L++G    GK+T+L            PTIG  F ++ V    K +   +WD  GQ++ 
Sbjct: 2  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDKI 57

Query: 75 RTLTSSYYRGAQGIIMVYDVTRRD 98
          R L   Y++  QG+I V D   R+
Sbjct: 58 RPLWRHYFQNTQGLIFVVDSNDRE 81

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 4/86 (4%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           ++LL+G    GK+T+L    S+    ++PT G  F IK+V   G K+ +  WD  GQ + 
Sbjct: 17  RILLLGLDNAGKTTILKQLASEDISHITPTQG--FNIKNVQADGFKLNV--WDIGGQRKI 72

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTF 100
           R    +Y+     +I V D   R  F
Sbjct: 73  RPYWRNYFENTDVLIYVIDSADRKRF 98

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 49.1 bits (117), Expect = 6e-08
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
          ++L++G    GK+T+L            PTIG  F ++ V    K +K  +WD  GQ++ 
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEVVTTIPTIG--FNVETVEY--KNLKFTMWDVGGQDKL 74

Query: 75 RTLTSSYYRGAQGIIMVYDVTRRD 98
          R L   YY+   G+I V D   R+
Sbjct: 75 RPLWRHYYQNTNGLIFVVDSNDRE 98

Length = 182

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 49.0 bits (117), Expect = 6e-08
 Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 21/129 (16%)

Query: 15  KLLLIGDSGVGKSTLL------------LSFTSDTFEELSPTIGVDFKIKHVALGGKKMK 62
           K+++IG  G GK+T +               +S + +   PT  V      + L      
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTT-VAMDFGSIELDEDT-G 69

Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
           + ++ T GQERF+ +     RGA G I++ D +R  TF       A+EI  + T+++ I 
Sbjct: 70  VHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFH------AEEIIDFLTSRNPIP 123

Query: 123 LLVG-NKVD 130
           ++V  NK D
Sbjct: 124 VVVAINKQD 132

Length = 187

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 12/92 (13%)

Query: 17  LLIGDSGVGKSTLL----LSFTSDT----FEELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
           L++G    GK+T L      F+ +       +++PT+G++  I  + +G  K +L  WD 
Sbjct: 3   LILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLN--IGTIEVG--KARLMFWDL 58

Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTF 100
            GQE  R+L   YY  + G+I V D T R+ F
Sbjct: 59  GGQEELRSLWDKYYAESHGVIYVIDSTDRERF 90

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 43.2 bits (102), Expect = 8e-06
 Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
          ++L++G  G GK+T+L            PTIG  F ++ V    K +K  +WD  GQ   
Sbjct: 1  RILILGLDGAGKTTILYRLQVGEVVTTIPTIG--FNVETVTY--KNLKFQVWDLGGQTSI 56

Query: 75 RTLTSSYYRGAQGIIMVYDVTRRD 98
          R     YY     II V D T RD
Sbjct: 57 RPYWRCYYSNTDAIIYVVDSTDRD 80

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 25/127 (19%)

Query: 16  LLLIGDSGVGKSTLL--LSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           +L++G    GK+T++  L  ++   + + PT+G  F ++    G   +    +D +GQ +
Sbjct: 2   ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVG--FNVESFKKGN--LSFTAFDMSGQGK 57

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLADIWAKEIDLYSTNQDCIKL 123
           +R L   YY+  QGII V D + R          +   N  DI  + I +         L
Sbjct: 58  YRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPI---------L 108

Query: 124 LVGNKVD 130
              NK+D
Sbjct: 109 FYANKMD 115

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 13/121 (10%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           K++ +G    GK+TLL     D   +  PT+      + + +G   +K   +D  G E+ 
Sbjct: 21  KIVFLGLDNAGKTTLLHMLKDDRLAQHVPTLH--PTSEELTIGN--VKFTTFDLGGHEQA 76

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTN----LADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           R +   Y+    GI+ + D    + F      L  +   E        +   L++GNK+D
Sbjct: 77  RRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDE-----ELANVPILILGNKID 131

Query: 131 K 131
           K
Sbjct: 132 K 132

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 16 LLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
          +L++G  G GK++LL S +S+   E   PT G  F    +      M+L   +  G +  
Sbjct: 2  ILVLGLDGAGKTSLLHSLSSERSLESVVPTTG--FNSVAIPTQDAIMELL--EIGGSQNL 57

Query: 75 RTLTSSYYRGAQGIIMVYDVTRR 97
          R     Y  G+QG+I V D    
Sbjct: 58 RKYWKRYLSGSQGLIFVVDSADS 80

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 41.4 bits (97), Expect = 4e-05
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 20/133 (15%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD----- 67
            ++ ++G  GVGK+ ++  F +  F EE  PT         V L G+   L I D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 68  ----TAGQE----RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDL-YSTNQ 118
               TAGQE    RFR L     R ++  I+VYD+   D+F  +  +  + ++   + N+
Sbjct: 61  RYPGTAGQEWMDPRFRGL-----RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNK 115

Query: 119 DCIKLLVGNKVDK 131
           +   ++VGNK D+
Sbjct: 116 EPPIVVVGNKRDQ 128

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 21/131 (16%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ- 71
           ++++++G S VGK+ ++  F    FEE  +PTI  DF  K  ++ G+  +L I DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 72  -----ERFRTLTSSYYRGAQGIIMVYDVTRRDTFT-------NLADIWAKEIDLYSTNQD 119
                 R   LT   +      I+V+ +  R++F         + +  +   +    N  
Sbjct: 60  PFPAMRRLSILTGDVF------ILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVK 113

Query: 120 CIKLLVGNKVD 130
              ++ GNK D
Sbjct: 114 IPMVICGNKAD 124

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 31/123 (25%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSP--------TIGVDFKIKHVALGGKKMKLAIW 66
           K+LL+G  G GKS    S  S  F   SP        TI V+    HV   G  + L +W
Sbjct: 1   KVLLMGLRGSGKS----SMRSIIFSNYSPRDTLRLGATIDVE--QSHVRFLG-NLTLNLW 53

Query: 67  DTAGQERFRTLTSSY-----YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           D  GQ+ F     +      +     +I V+DV  R+        + +++         I
Sbjct: 54  DCPGQDDFMENYLTRQKEHIFSNVGVLIYVFDVESRE--------YEEDLATL---VKII 102

Query: 122 KLL 124
           + L
Sbjct: 103 EAL 105

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family

 Score = 38.3 bits (90), Expect = 7e-04
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 10/67 (14%)

Query: 14 FKLLLIGDSGVGKSTL--------LLSFTSDTFEELSPTIGVDFKIKHVAL--GGKKMKL 63
          F ++++G+SG+GKST         L             T  V+ KI    L   G K+KL
Sbjct: 5  FNIMVVGESGLGKSTFINTLFGTKLYPSKYPPAPGEHITKTVEIKISKAELEENGVKLKL 64

Query: 64 AIWDTAG 70
           + DT G
Sbjct: 65 TVIDTPG 71

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. Length = 275

>gnl|CDD|206744 cd11384, RagA_like, Rag GTPase, subfamily of Ras-related GTPases, includes Ras-related GTP-binding proteins A and B

 Score = 38.0 bits (89), Expect = 8e-04
 Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 25/123 (20%)

Query: 15  KLLLIGDSGVGKS---TLLLSFTS--DTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
           K+LL+G SG GK+   +++ +     DT   L  TI V+    HV   G  + L +WD  
Sbjct: 1   KVLLMGKSGSGKTSMRSIIFANYLARDT-RRLGATIDVEH--SHVRFLG-NLVLNLWDCG 56

Query: 70  GQERF--RTLTS---SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL 124
           GQ+ F     TS     +R  + +I V+DV  R+          K++  +   + C++ L
Sbjct: 57  GQDAFMENYFTSQRDHIFRNVEVLIYVFDVESRE--------LEKDLTYF---RSCLEAL 105

Query: 125 VGN 127
             N
Sbjct: 106 RQN 108

RagA and RagB are closely related Rag GTPases (ras-related GTP-binding protein A and B) that constitute a unique subgroup of the Ras superfamily, and are functional homologs of Saccharomyces cerevisiae Gtr1. These domains function by forming heterodimers with RagC or RagD, and similarly, Gtr1 dimerizes with Gtr2, through the carboxy-terminal segments. They play an essential role in regulating amino acid-induced target of rapamycin complex 1 (TORC1) kinase signaling, exocytic cargo sorting at endosomes, and epigenetic control of gene expression. In response to amino acids, the Rag GTPases guide the TORC1 complex to activate the platform containing Rheb proto-oncogene by driving the relocalization of mTORC1 from discrete locations in the cytoplasm to a late endosomal and/or lysosomal compartment that is Rheb-enriched and contains Rab-7. Length = 286

>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP)

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 30/131 (22%), Positives = 45/131 (34%), Gaps = 32/131 (24%)

Query: 17  LLIGDSGVGKSTLLLSFTSD----TFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           LL+G S  GK+ L    T+     T   + P +   +         K  KL + D  G E
Sbjct: 4   LLLGPSDSGKTALFTKLTTGKVRSTVTSIEPNVASFYS-----NSSKGKKLTLVDVPGHE 58

Query: 73  RFRTLTSSYYRG-AQGIIMVYDVTRR------------DTFTNLADIWAKEIDLYSTNQD 119
           + R     Y +   + I+ V D                D  T+L  I   +I +      
Sbjct: 59  KLRDKLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKI-KNKIPI------ 111

Query: 120 CIKLLVGNKVD 130
              L+  NK D
Sbjct: 112 ---LIACNKQD 119

Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 33/141 (23%), Positives = 51/141 (36%), Gaps = 47/141 (33%)

Query: 14  FKLLLIGDSGVGKSTLLLSF--------------TSDTFEELSPTIGVDFKIKHVALGGK 59
            K+++IG   VGKS+LL +               T D  EE             + L G 
Sbjct: 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEE------------DINLNG- 264

Query: 60  KMKLAIWDTAGQ-------ERF---RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAK 109
            + + + DTAG        ER    R   +     A  ++ V D ++     +L      
Sbjct: 265 -IPVRLVDTAGIRETDDVVERIGIERAKKAI--EEADLVLFVLDASQPLDKEDL-----A 316

Query: 110 EIDLYSTNQDCIKLLVGNKVD 130
            I+L    +  I  +V NK D
Sbjct: 317 LIELLPKKKPII--VVLNKAD 335

Length = 454

>gnl|CDD|206742 cd09915, Rag, Rag GTPase subfamily of Ras-related GTPases

 Score = 35.6 bits (82), Expect = 0.004
 Identities = 35/127 (27%), Positives = 50/127 (39%), Gaps = 15/127 (11%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPT----IGVDFKIKHVALGGKK-MKLAIWDTA 69
           KLLL G    GKS    S     F   SP     +     ++H  L       L +WD  
Sbjct: 1   KLLLXGRRRSGKS----SIRKVVFHNYSPFDTLRLESTIDVEHSHLSFLGNXTLNLWDCP 56

Query: 70  GQERFRTLTSSY---YRGAQGIIMVYDVTRRDTFTNLADIWAKEID-LYSTNQDCIKLLV 125
           GQ+ F   T      ++    +I V DV  +D +     I AK +   Y  N D    ++
Sbjct: 57  GQDVFFEPTKDKEHIFQXVGALIYVIDV--QDEYLKAITILAKALKQAYKVNPDANIEVL 114

Query: 126 GNKVDKV 132
            +KVD +
Sbjct: 115 IHKVDGL 121

Rag GTPases (ras-related GTP-binding proteins) constitute a unique subgroup of the Ras superfamily, playing an essential role in regulating amino acid-induced target of rapamycin complex 1 (TORC1) kinase signaling, exocytic cargo sorting at endosomes, and epigenetic control of gene expression. This subfamily consists of RagA and RagB as well as RagC and RagD that are closely related. Saccharomyces cerevisiae encodes single orthologs of metazoan RagA/B and RagC/D, Gtr1 and Gtr2, respectively. Dimer formation is important for their cellular function; these domains form heterodimers, as RagA or RagB dimerizes with RagC or RagD, and similarly, Gtr1 dimerizes with Gtr2. In response to amino acids, the Rag GTPases guide the TORC1 complex to activate the platform containing Rheb proto-oncogene by driving the relocalization of mTORC1 from discrete locations in the cytoplasm to a late endosomal and/or lysosomal compartment that is Rheb-enriched and contains Rab-7. Length = 175

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	154
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.98
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.97
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.97
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.97
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.97
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.97
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.97
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.97
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.96
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.96
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.96
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.96
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.96
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.96
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.96
KOG0394	210	consensus Ras-related GTPase [General function pre	99.96
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.96
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.96
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.96
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.96
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.96
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.96
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.96
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.96
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.96
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.96
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.96
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.96
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.96
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.96
PTZ00369	189	Ras-like protein; Provisional	99.96
PLN03110	216	Rab GTPase; Provisional	99.96
PLN03118	211	Rab family protein; Provisional	99.96
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.96
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.96
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.96
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.96
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.96
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.95
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.95
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.95
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.95
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.95
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.95
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.95
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.95
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.95
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.95
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.95
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.95
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.95
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.95
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.95
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.95
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.95
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.95
PLN00023	334	GTP-binding protein; Provisional	99.95
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.95
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.95
PLN03108	210	Rab family protein; Provisional	99.95
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.95
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.95
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.95
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.95
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.95
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.95
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.95
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.95
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.95
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.94
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.94
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.94
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.94
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.94
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.94
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.94
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.94
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.94
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.94
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.94
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.94
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.94
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.93
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.93
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.93
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.93
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.93
KOG0395	196	consensus Ras-related GTPase [General function pre	99.93
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.93
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.93
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.93
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.93
PLN00223	181	ADP-ribosylation factor; Provisional	99.93
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.93
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.93
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.93
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.93
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.93
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.92
PTZ00133	182	ADP-ribosylation factor; Provisional	99.92
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.92
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.92
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.92
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.92
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.92
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.92
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.92
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.92
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.91
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.91
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.91
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.91
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.91
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.91
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.9
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.9
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.9
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.9
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.89
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.89
COG1100	219	GTPase SAR1 and related small G proteins [General	99.89
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.89
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.88
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.88
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.87
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.87
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.87
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.87
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.87
PRK03003	472	GTP-binding protein Der; Reviewed	99.87
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.86
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.86
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.85
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.85
PRK15494	339	era GTPase Era; Provisional	99.85
PRK12299	335	obgE GTPase CgtA; Reviewed	99.85
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.84
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.84
COG1160	444	Predicted GTPases [General function prediction onl	99.84
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.84
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.84
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.83
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.83
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.83
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.83
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.83
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.83
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.82
PTZ00099	176	rab6; Provisional	99.82
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.82
PRK00093	435	GTP-binding protein Der; Reviewed	99.82
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.82
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.82
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.82
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.81
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.81
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.81
PRK04213	201	GTP-binding protein; Provisional	99.81
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.8
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.8
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.8
PRK11058	426	GTPase HflX; Provisional	99.8
PRK12297	424	obgE GTPase CgtA; Reviewed	99.79
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.79
PRK00089	292	era GTPase Era; Reviewed	99.79
PRK03003	472	GTP-binding protein Der; Reviewed	99.79
COG1159	298	Era GTPase [General function prediction only]	99.78
PRK12296	500	obgE GTPase CgtA; Reviewed	99.78
KOG1673	205	consensus Ras GTPases [General function prediction	99.78
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.78
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.78
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.77
cd00881	189	GTP_translation_factor GTP translation factor fami	99.76
PRK12298	390	obgE GTPase CgtA; Reviewed	99.76
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.76
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.75
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.75
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.75
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.74
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.74
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.74
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.74
PRK00093	435	GTP-binding protein Der; Reviewed	99.74
PRK05433	600	GTP-binding protein LepA; Provisional	99.74
PRK12317	425	elongation factor 1-alpha; Reviewed	99.73
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.73
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.73
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.72
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.72
CHL00189	742	infB translation initiation factor 2; Provisional	99.72
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.72
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.71
PRK05306	787	infB translation initiation factor IF-2; Validated	99.71
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.71
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.71
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.71
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.71
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.71
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.71
PRK10218	607	GTP-binding protein; Provisional	99.71
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.7
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.7
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.69
COG1160	444	Predicted GTPases [General function prediction onl	99.69
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.69
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.68
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.68
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.68
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.68
COG2229	187	Predicted GTPase [General function prediction only	99.67
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.67
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.67
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.67
COG0218	200	Predicted GTPase [General function prediction only	99.67
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.67
COG0486	454	ThdF Predicted GTPase [General function prediction	99.67
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.67
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.66
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.66
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.65
PRK13351	687	elongation factor G; Reviewed	99.65
COG2262	411	HflX GTPases [General function prediction only]	99.65
CHL00071	409	tufA elongation factor Tu	99.65
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.64
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.64
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.64
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.63
PRK12735	396	elongation factor Tu; Reviewed	99.63
PRK04004	586	translation initiation factor IF-2; Validated	99.63
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.62
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.62
COG1084	346	Predicted GTPase [General function prediction only	99.62
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.61
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.6
PRK12736	394	elongation factor Tu; Reviewed	99.59
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.59
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.59
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.59
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.59
PLN03126	478	Elongation factor Tu; Provisional	99.59
PRK12739	691	elongation factor G; Reviewed	99.59
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.58
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.58
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.57
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.56
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.56
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.56
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.55
PLN03127	447	Elongation factor Tu; Provisional	99.55
PRK00007	693	elongation factor G; Reviewed	99.55
PRK09602	396	translation-associated GTPase; Reviewed	99.54
PRK00049	396	elongation factor Tu; Reviewed	99.53
COG0536	369	Obg Predicted GTPase [General function prediction	99.53
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.52
PTZ00141	446	elongation factor 1- alpha; Provisional	99.5
PLN00043	447	elongation factor 1-alpha; Provisional	99.49
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.46
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.45
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.45
PTZ00416	836	elongation factor 2; Provisional	99.44
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.42
KOG0090	238	consensus Signal recognition particle receptor, be	99.42
COG3596	296	Predicted GTPase [General function prediction only	99.41
COG1163	365	DRG Predicted GTPase [General function prediction	99.41
PRK12740	668	elongation factor G; Reviewed	99.4
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.38
PRK09866	741	hypothetical protein; Provisional	99.38
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.38
PTZ00258	390	GTP-binding protein; Provisional	99.37
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.37
PRK07560	731	elongation factor EF-2; Reviewed	99.37
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.35
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.34
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.34
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.33
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.33
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.32
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.31
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.31
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.31
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.27
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.25
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.24
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.23
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.22
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.22
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.21
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.2
KOG1145	683	consensus Mitochondrial translation initiation fac	99.2
PRK09601	364	GTP-binding protein YchF; Reviewed	99.19
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.15
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.13
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.11
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.07
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.05
PRK14845	1049	translation initiation factor IF-2; Provisional	99.05
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.04
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.04
PRK13768	253	GTPase; Provisional	99.04
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.03
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.02
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.01
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.0
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.99
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.99
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.98
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.97
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.97
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.96
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.91
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.91
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.89
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.88
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.88
COG1161	322	Predicted GTPases [General function prediction onl	98.84
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.79
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.78
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.78
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.78
KOG0461	522	consensus Selenocysteine-specific elongation facto	98.77
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.76
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.76
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.75
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.73
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.72
KOG0410	410	consensus Predicted GTP binding protein [General f	98.71
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.67
KOG2486	320	consensus Predicted GTPase [General function predi	98.62
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	98.61
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.6
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.59
PRK12289	352	GTPase RsgA; Reviewed	98.58
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.58
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.57
PRK12288	347	GTPase RsgA; Reviewed	98.56
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.54
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.52
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.5
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.48
PRK13796	365	GTPase YqeH; Provisional	98.47
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.46
KOG0460	449	consensus Mitochondrial translation elongation fac	98.45
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.45
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.44
cd03112	158	CobW_like The function of this protein family is u	98.43
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.42
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.4
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.34
PRK00098	298	GTPase RsgA; Reviewed	98.3
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.25
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	98.24
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.24
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.23
COG1162	301	Predicted GTPases [General function prediction onl	98.18
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.12
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.1
KOG1143	591	consensus Predicted translation elongation factor	98.09
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.09
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	98.08
PRK12289	352	GTPase RsgA; Reviewed	98.07
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.05
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.02
PRK00098	298	GTPase RsgA; Reviewed	98.02
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.01
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.01
KOG2484	435	consensus GTPase [General function prediction only	97.99
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	97.98
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.94
COG3523	1188	IcmF Type VI protein secretion system component Va	97.94
KOG0466	466	consensus Translation initiation factor 2, gamma s	97.91
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.88
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.85
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	97.84
PRK14738	206	gmk guanylate kinase; Provisional	97.84
PRK10416	318	signal recognition particle-docking protein FtsY;	97.84
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	97.83
PRK13695	174	putative NTPase; Provisional	97.82
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.79
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.75
PRK14974	336	cell division protein FtsY; Provisional	97.75
COG5258	527	GTPBP1 GTPase [General function prediction only]	97.74
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	97.73
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.69
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.68
PRK08118	167	topology modulation protein; Reviewed	97.66
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	97.66
PRK12288	347	GTPase RsgA; Reviewed	97.66
COG0523	323	Putative GTPases (G3E family) [General function pr	97.66
KOG4273	418	consensus Uncharacterized conserved protein [Funct	97.65
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.63
PRK07261	171	topology modulation protein; Provisional	97.6
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.6
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.59
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.59
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.58
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.57
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.56
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.54
PRK14737	186	gmk guanylate kinase; Provisional	97.53
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.52
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.51
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	97.48
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.44
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.44
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.43
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.41
cd03111	106	CpaE_like This protein family consists of proteins	97.39
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.38
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.35
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.35
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	97.35
PRK06217	183	hypothetical protein; Validated	97.34
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.32
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.32
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	97.31
smart00382	148	AAA ATPases associated with a variety of cellular	97.3
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.29
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.28
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.28
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.28
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.28
PRK01889	356	GTPase RsgA; Reviewed	97.26
PF00004	132	AAA: ATPase family associated with various cellula	97.26
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.26
PRK14530	215	adenylate kinase; Provisional	97.25
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.25
PRK03839	180	putative kinase; Provisional	97.23
PRK10867	433	signal recognition particle protein; Provisional	97.23
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.23
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.22
PRK05480	209	uridine/cytidine kinase; Provisional	97.22
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.22
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.21
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.19
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.19
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.19
PLN02200	234	adenylate kinase family protein	97.18
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.18
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.17
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.16
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.16
PRK13949	169	shikimate kinase; Provisional	97.16
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.16
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.15
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.14
TIGR00959	428	ffh signal recognition particle protein. This mode	97.13
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.13
PRK14532	188	adenylate kinase; Provisional	97.12
PRK14531	183	adenylate kinase; Provisional	97.1
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.1
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.1
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.09
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.09
COG4525	259	TauB ABC-type taurine transport system, ATPase com	97.09
PRK02496	184	adk adenylate kinase; Provisional	97.09
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.09
PRK08233	182	hypothetical protein; Provisional	97.07
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.07
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.07
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.07
PTZ00088	229	adenylate kinase 1; Provisional	97.06
PRK00300	205	gmk guanylate kinase; Provisional	97.05
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.05
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.04
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.04
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.03
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.03
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.03
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	97.02
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.01
PRK13851	344	type IV secretion system protein VirB11; Provision	97.01
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.01
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.01
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.0
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	97.0
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.99
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.99
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	96.99
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	96.99
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	96.98
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	96.98
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	96.97
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.97
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.97
PRK04195	482	replication factor C large subunit; Provisional	96.96
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	96.96
PRK00625	173	shikimate kinase; Provisional	96.96
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	96.96
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	96.95
cd03269	210	ABC_putative_ATPase This subfamily is involved in	96.95
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	96.94
PRK05057	172	aroK shikimate kinase I; Reviewed	96.94
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	96.94
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	96.94

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.4e-35  Score=194.54  Aligned_cols=140  Identities=57%  Similarity=0.943  Sum_probs=129.7

Q ss_pred             cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 031704            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (154)
Q Consensus         7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (154)
                      .+..++.+||+++|.+|+|||||+.||....| ..+..|.|+++..+.+.++++.+++++|||+|+++|+.+...++|.+
T Consensus         3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a   82 (205)
T KOG0084|consen    3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA   82 (205)
T ss_pred             CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence            35678999999999999999999999999999 67778999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhhhhc
Q 031704           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLS  148 (154)
Q Consensus        86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~  148 (154)
                      |++|+|||+++.+||..+.. |++.++++ ...+.|.++||||||+.+.+.+..++...|...
T Consensus        83 hGii~vyDiT~~~SF~~v~~-Wi~Ei~~~-~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~  143 (205)
T KOG0084|consen   83 HGIIFVYDITKQESFNNVKR-WIQEIDRY-ASENVPKLLVGNKCDLTEKRVVSTEEAQEFADE  143 (205)
T ss_pred             CeEEEEEEcccHHHhhhHHH-HHHHhhhh-ccCCCCeEEEeeccccHhheecCHHHHHHHHHh
Confidence            99999999999999999999 99999998 666789999999999999999988887666443

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.8e-32  Score=180.26  Aligned_cols=133  Identities=37%  Similarity=0.631  Sum_probs=124.1

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      .-+.+|++++|..++||||||+|++.+.+ ..+.+++|+++....+.+.+..+.+++|||+|+++|+.+.+.|+|++.++
T Consensus        19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va   98 (221)
T KOG0094|consen   19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   98 (221)
T ss_pred             cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence            34559999999999999999999999999 78899999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhh
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFW  143 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~  143 (154)
                      |+|||+++..+|++... |++.+++..+..+.-++|||||.||.+++++..+|..
T Consensus        99 viVyDit~~~Sfe~t~k-Wi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~  152 (221)
T KOG0094|consen   99 VIVYDITDRNSFENTSK-WIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGE  152 (221)
T ss_pred             EEEEeccccchHHHHHH-HHHHHHhccCCCceEEEEEcccccccchhhhhHHHHH
Confidence            99999999999999999 9999998766667889999999999999998776654

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.5e-32  Score=178.53  Aligned_cols=132  Identities=42%  Similarity=0.754  Sum_probs=122.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      ..+|++++|..++|||||+.|+..++|.+ ..+++|..+.+..+.+++..+++.||||.|+++|..+.++++|+++++|+
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv   83 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV   83 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence            56899999999999999999999999944 58999999999999999999999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHF  145 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~  145 (154)
                      |||+++.+||..+.. |.+.+++. ..++.-+.|||||+||...+++...|...+
T Consensus        84 vYDit~~~SF~~aK~-WvkeL~~~-~~~~~vialvGNK~DL~~~R~V~~~ea~~y  136 (200)
T KOG0092|consen   84 VYDITDEESFEKAKN-WVKELQRQ-ASPNIVIALVGNKADLLERREVEFEEAQAY  136 (200)
T ss_pred             EEecccHHHHHHHHH-HHHHHHhh-CCCCeEEEEecchhhhhhcccccHHHHHHH
Confidence            999999999999999 99999988 447888899999999999899887776654

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.98  E-value=1.5e-31  Score=172.43  Aligned_cols=137  Identities=65%  Similarity=1.026  Sum_probs=127.2

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCc-ceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPT-IGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   86 (154)
                      +.....+||+++|.+|+|||+|+.++..+.+.+..++ .|.++..+.+.+++..+++.+|||+|+++|+.+.+.++|.+.
T Consensus         6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq   85 (209)
T KOG0080|consen    6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ   85 (209)
T ss_pred             cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence            4556779999999999999999999999999666665 899999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhh
Q 031704           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHF  145 (154)
Q Consensus        87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~  145 (154)
                      ++|+|||++.+++|..+.. |.+++..++.++++-.++|+||+|...++.+..+|...|
T Consensus        86 GiIlVYDVT~Rdtf~kLd~-W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kf  143 (209)
T KOG0080|consen   86 GIILVYDVTSRDTFVKLDI-WLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKF  143 (209)
T ss_pred             eeEEEEEccchhhHHhHHH-HHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHH
Confidence            9999999999999999955 999999999999999999999999998899988877665

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5.8e-31  Score=173.43  Aligned_cols=134  Identities=46%  Similarity=0.827  Sum_probs=125.1

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      ....+|++++|..|+|||||+.++..++| +..-.|.|+++..+.+.++++.+++++|||.|++.|++....+++.+.++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            45779999999999999999999999999 66668899999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhh
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHF  145 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~  145 (154)
                      ++|||++++++|..+.+ |+..++.+ ...+.-++|+|||+||...+.+..+|...|
T Consensus        83 lLVydit~r~sF~hL~~-wL~D~rq~-~~~NmvImLiGNKsDL~~rR~Vs~EEGeaF  137 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTS-WLEDARQH-SNENMVIMLIGNKSDLEARREVSKEEGEAF  137 (216)
T ss_pred             EEEEEccchhhHHHHHH-HHHHHHHh-cCCCcEEEEEcchhhhhccccccHHHHHHH
Confidence            99999999999999999 99999987 678889999999999999999988777654

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.6e-30  Score=174.86  Aligned_cols=135  Identities=55%  Similarity=0.941  Sum_probs=126.4

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   86 (154)
                      ++.++.+|++++|.+++||||++.+|..+.+ ..+..+.|+++..+.+.+++..+.+++|||.|+++++.+...+++.++
T Consensus         7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~   86 (207)
T KOG0078|consen    7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM   86 (207)
T ss_pred             CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence            3778999999999999999999999999999 788899999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhh
Q 031704           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWH  144 (154)
Q Consensus        87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~  144 (154)
                      ++++|||+++..+|+++.. |...+..+ ...+.|.+|||||+|+.+++++..+....
T Consensus        87 gi~LvyDitne~Sfeni~~-W~~~I~e~-a~~~v~~~LvGNK~D~~~~R~V~~e~ge~  142 (207)
T KOG0078|consen   87 GILLVYDITNEKSFENIRN-WIKNIDEH-ASDDVVKILVGNKCDLEEKRQVSKERGEA  142 (207)
T ss_pred             eeEEEEEccchHHHHHHHH-HHHHHHhh-CCCCCcEEEeeccccccccccccHHHHHH
Confidence            9999999999999999999 99999998 66789999999999999988886655443

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.1e-30  Score=175.18  Aligned_cols=139  Identities=48%  Similarity=0.797  Sum_probs=128.8

Q ss_pred             cccCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 031704            5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR   83 (154)
Q Consensus         5 ~~~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   83 (154)
                      ..+...++.+||+++|.+++|||-|+.|+..++| .+..++.|.++.+..+.++++.++.+||||.|+++|+.+...+++
T Consensus         6 ~~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYr   85 (222)
T KOG0087|consen    6 DKSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYR   85 (222)
T ss_pred             CCccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhc
Confidence            3356788999999999999999999999999999 788899999999999999999999999999999999999999999


Q ss_pred             CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhh
Q 031704           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHF  145 (154)
Q Consensus        84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~  145 (154)
                      .+.++++|||++...+|+.+.. |+.+++.+ .++++++++||||+||.+.+.+.-++...+
T Consensus        86 gAvGAllVYDITr~~Tfenv~r-WL~ELRdh-ad~nivimLvGNK~DL~~lraV~te~~k~~  145 (222)
T KOG0087|consen   86 GAVGALLVYDITRRQTFENVER-WLKELRDH-ADSNIVIMLVGNKSDLNHLRAVPTEDGKAF  145 (222)
T ss_pred             ccceeEEEEechhHHHHHHHHH-HHHHHHhc-CCCCeEEEEeecchhhhhccccchhhhHhH
Confidence            9999999999999999999988 99999998 778999999999999999888766665544

>cd04120 Rab12 Rab12 subfamily

Probab=99.97  E-value=7.1e-30  Score=176.16  Aligned_cols=126  Identities=52%  Similarity=0.888  Sum_probs=112.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   93 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d   93 (154)
                      .|+++|..|+|||||++++..+.+ ..+.++.+.++....+.+++..+.+.+|||+|++.++.++..+++++|++++|||
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfD   81 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYD   81 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEE
Confidence            689999999999999999999999 5567788888888888899999999999999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      ++++++|+.+.. |...+... ...+.|+++||||+|+.+.+++...+.
T Consensus        82 vtd~~Sf~~l~~-w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~  128 (202)
T cd04120          82 ITKKETFDDLPK-WMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQG  128 (202)
T ss_pred             CcCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEECcccccccccCHHHH
Confidence            999999999988 98888765 456789999999999987776655444

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04121 Rab40 Rab40 subfamily

Probab=99.97  E-value=1.6e-29  Score=172.88  Aligned_cols=132  Identities=41%  Similarity=0.716  Sum_probs=114.9

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      .+..+||+++|..|+|||||+.++..+.+ ..+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus         3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i   82 (189)
T cd04121           3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI   82 (189)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            34679999999999999999999999888 45557777778777788899999999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhh
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWH  144 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~  144 (154)
                      ++|||++++.+|+.+.. |.+.+...  .++.|++|||||+||...+.+..++...
T Consensus        83 llVfD~t~~~Sf~~~~~-w~~~i~~~--~~~~piilVGNK~DL~~~~~v~~~~~~~  135 (189)
T cd04121          83 ILVYDITNRWSFDGIDR-WIKEIDEH--APGVPKILVGNRLHLAFKRQVATEQAQA  135 (189)
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECccchhccCCCHHHHHH
Confidence            99999999999999987 99998765  2578999999999998776665555443

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.4e-30  Score=165.77  Aligned_cols=138  Identities=45%  Similarity=0.807  Sum_probs=128.4

Q ss_pred             cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 031704            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (154)
Q Consensus         7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (154)
                      .+..+..+|++++|+.|.|||||++++..+++ .+...+.|+++..+.+.++++.+++++|||.|++.|+...+.+++.+
T Consensus         3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA   82 (214)
T KOG0086|consen    3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA   82 (214)
T ss_pred             chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence            34677889999999999999999999999999 77788999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhhh
Q 031704           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFL  146 (154)
Q Consensus        86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~  146 (154)
                      .+.++|||++++++|+.+.. |+...+.. ..+++-++++|||.||..++++...|...|-
T Consensus        83 AGAlLVYD~TsrdsfnaLtn-WL~DaR~l-As~nIvviL~GnKkDL~~~R~VtflEAs~Fa  141 (214)
T KOG0086|consen   83 AGALLVYDITSRDSFNALTN-WLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLEASRFA  141 (214)
T ss_pred             cceEEEEeccchhhHHHHHH-HHHHHHhh-CCCcEEEEEeCChhhcChhhhhhHHHHHhhh
Confidence            99999999999999999999 99998876 7788899999999999999999888776653

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.97  E-value=1e-28  Score=173.24  Aligned_cols=130  Identities=25%  Similarity=0.485  Sum_probs=111.2

Q ss_pred             CCCCcccCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccc
Q 031704            1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTS   79 (154)
Q Consensus         1 m~~~~~~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   79 (154)
                      |..+..+......+||+++|..|+|||||++++..+.+ ..+.|+.+..+. ..+.+++..+.+.+|||+|++.+..+.+
T Consensus         1 ~~~~~~~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~   79 (232)
T cd04174           1 MKERRIPQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRP   79 (232)
T ss_pred             CcccccCcCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHH
Confidence            55555555666789999999999999999999999988 566778776664 4577889999999999999999999999


Q ss_pred             ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        80 ~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      .+++++|++++|||++++++|+.+...|.+.+....  ++.|++|||||+||.+
T Consensus        80 ~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~  131 (232)
T cd04174          80 LCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRT  131 (232)
T ss_pred             HHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccccc
Confidence            999999999999999999999986444999888753  4679999999999964

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.6e-29  Score=160.44  Aligned_cols=129  Identities=47%  Similarity=0.890  Sum_probs=118.9

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (154)
                      .....+||+++|..|+|||||+.++..+-+ +....+.|.++.++.+.++++++++++|||.|+++|+.+...+++.+++
T Consensus         3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha   82 (213)
T KOG0095|consen    3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA   82 (213)
T ss_pred             ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence            456789999999999999999999999999 5566789999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      ++++||+++..+|+.+.+ |+..+..+ .+...--|+||||.|+.+++++..
T Consensus        83 lilvydiscqpsfdclpe-wlreie~y-an~kvlkilvgnk~d~~drrevp~  132 (213)
T KOG0095|consen   83 LILVYDISCQPSFDCLPE-WLREIEQY-ANNKVLKILVGNKIDLADRREVPQ  132 (213)
T ss_pred             EEEEEecccCcchhhhHH-HHHHHHHH-hhcceEEEeeccccchhhhhhhhH
Confidence            999999999999999999 99999998 566666789999999998887754

>cd04122 Rab14 Rab14 subfamily

Probab=99.96  E-value=8e-29  Score=166.16  Aligned_cols=128  Identities=47%  Similarity=0.835  Sum_probs=110.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      .+||+++|++|+|||||++++..+++ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            47999999999999999999999988 55556777777777788888999999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      ||++++++++.+.. |.+.+... ...+.|+++|+||+|+..++.+..++.
T Consensus        82 ~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~  130 (166)
T cd04122          82 YDITRRSTYNHLSS-WLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEA  130 (166)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHH
Confidence            99999999999988 88877665 446789999999999987665544333

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.96  E-value=1.1e-28  Score=167.90  Aligned_cols=120  Identities=27%  Similarity=0.576  Sum_probs=105.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      ...+||+++|.+++|||||++++..+.+ ..+.|+.+..+. ..+.+++..+.+.+|||+|++.+..+...+++++|+++
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            4568999999999999999999999998 566777776553 56778999999999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      +|||++++.+|+.+...|.+.++...  ++.|++|||||+||.+
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~  123 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRT  123 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhc
Confidence            99999999999998555999888763  4689999999999964

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04133 Rop_like Rop subfamily

Probab=99.96  E-value=2e-28  Score=165.77  Aligned_cols=119  Identities=32%  Similarity=0.633  Sum_probs=104.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +|++++|.+++|||||+.++..+.+ ..+.++.+..+ ...+.+++..+.+.+|||+|++.++.+...+++++|++++||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            6999999999999999999999999 56778887665 445677889999999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      |++++++|+.+...|.+.+....  .+.|++|||||+||.+++
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~  121 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDK  121 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccCh
Confidence            99999999998544999887653  478999999999996543

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04131 Rnd Rnd subfamily

Probab=99.96  E-value=1.6e-28  Score=166.60  Aligned_cols=118  Identities=25%  Similarity=0.570  Sum_probs=103.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      ++||+++|++|+|||||++++.++.+ ..+.|+.+..+ ...+.+++..+.+.+|||+|++.+..+.+.+++++|++++|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            47999999999999999999999988 45667776555 35677889999999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      ||++++++|+.+...|.+.++...  ++.|+++||||+||.+
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~  119 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRT  119 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhc
Confidence            999999999997544999888763  5789999999999964

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.96  E-value=1.8e-28  Score=164.71  Aligned_cols=128  Identities=55%  Similarity=0.955  Sum_probs=111.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      ..+||+++|++|+|||||++++.+.++ ..+.++.+.++....+..++..+.+.+||+||++.+......+++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            468999999999999999999999998 5667888877777778888888999999999999999888889999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG  141 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~  141 (154)
                      |||++++++++.+.. |...+... ...+.|+++|+||+|+.+.+++..++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~  130 (167)
T cd01867          82 VYDITDEKSFENIRN-WMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEE  130 (167)
T ss_pred             EEECcCHHHHHhHHH-HHHHHHHh-CCCCCcEEEEEECcccccccCCCHHH
Confidence            999999999999988 98888765 44678999999999998665554433

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=7.6e-29  Score=157.75  Aligned_cols=134  Identities=45%  Similarity=0.854  Sum_probs=122.5

Q ss_pred             cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 031704            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (154)
Q Consensus         7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (154)
                      .++.+.-+|++++|...+|||+|+.++.+..+ +....+.|+.+..+.+.-+.+.+.+++|||+|++.++.+...++|++
T Consensus        15 dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga   94 (193)
T KOG0093|consen   15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA   94 (193)
T ss_pred             cccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc
Confidence            45667889999999999999999999999999 78889999999999888888899999999999999999999999999


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      +++++|||+++.++|..+.. |.-++..+ .-.+.|+|+|+||||+.+++.+..+..
T Consensus        95 mgfiLmyDitNeeSf~svqd-w~tqIkty-sw~naqvilvgnKCDmd~eRvis~e~g  149 (193)
T KOG0093|consen   95 MGFILMYDITNEESFNSVQD-WITQIKTY-SWDNAQVILVGNKCDMDSERVISHERG  149 (193)
T ss_pred             ceEEEEEecCCHHHHHHHHH-HHHHheee-eccCceEEEEecccCCccceeeeHHHH
Confidence            99999999999999999999 99999887 566889999999999999988755443

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.96  E-value=7.3e-29  Score=163.20  Aligned_cols=132  Identities=36%  Similarity=0.670  Sum_probs=116.7

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      ....+|++++|.+|+|||||.|++..++| ..+..+.|.++..+.+.++++.+.+++|||+|+++|+.+...++|++|++
T Consensus         6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC   85 (210)
T KOG0394|consen    6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC   85 (210)
T ss_pred             cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence            34569999999999999999999999999 78889999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCC---CCCcEEEEEeCCCCCCc--hhhhhhhh
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTN---QDCIKLLVGNKVDKVCP--WRLFLSGF  142 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~ivv~nK~Dl~~~--~~~~~~~~  142 (154)
                      ++|||++++.+|+.+.. |.+++..+...   ...|+||+|||+|+...  ++++....
T Consensus        86 vlvydv~~~~Sfe~L~~-Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~A  143 (210)
T KOG0394|consen   86 VLVYDVNNPKSFENLEN-WRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKA  143 (210)
T ss_pred             EEEeecCChhhhccHHH-HHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHH
Confidence            99999999999999999 99887766332   23599999999999652  55544333

>cd01864 Rab19 Rab19 subfamily

Probab=99.96  E-value=3.6e-28  Score=162.78  Aligned_cols=124  Identities=50%  Similarity=0.913  Sum_probs=107.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      +.+||+++|++|+|||||++++.++.+ ..+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            468999999999999999999999888 4455677667777778888888899999999999999888889999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      |||++++.+++.+.. |...+... ...+.|+++|+||+|+...+++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~  126 (165)
T cd01864          82 AYDITRRSSFESVPH-WIEEVEKY-GASNVVLLLIGNKCDLEEQREV  126 (165)
T ss_pred             EEECcCHHHHHhHHH-HHHHHHHh-CCCCCcEEEEEECccccccccc
Confidence            999999999999888 88888765 3467899999999999766544

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04127 Rab27A Rab27a subfamily

Probab=99.96  E-value=3.1e-28  Score=165.21  Aligned_cols=131  Identities=37%  Similarity=0.734  Sum_probs=110.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEEC----------CeEEEEEEEeCCCccccccccc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG----------GKKMKLAIWDTAGQERFRTLTS   79 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~   79 (154)
                      ++.+||+++|++|+|||||++++..+.+ ..+.++.+.++....+.+.          +..+.+.+||+||++.+...+.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            3569999999999999999999999988 5667777777766666554          4568999999999999999999


Q ss_pred             ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        80 ~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      .+++++|++++|||+++++++..+.. |...+.......+.|+++|+||+|+..++++..++.
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~  143 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRN-WMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQA  143 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHH
Confidence            99999999999999999999999988 998887764456789999999999987666544433

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.96  E-value=3.1e-28  Score=168.13  Aligned_cols=128  Identities=38%  Similarity=0.646  Sum_probs=108.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      +||+++|++|+|||||++++.++.+ ..+.++.+.++....+.++ +..+.+.+|||+|++.+..++..+++++|++++|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            5899999999999999999999988 5667888877777777777 7889999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhc---CCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYS---TNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      ||++++++|+.+.. |...+....   ...+.|++||+||+|+.+.+.+..++.
T Consensus        81 ~D~t~~~s~~~~~~-~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~  133 (201)
T cd04107          81 FDVTRPSTFEAVLK-WKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQM  133 (201)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHH
Confidence            99999999999987 887776532   235789999999999975554444333

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01868 Rab11_like Rab11-like

Probab=99.96  E-value=3.6e-28  Score=162.67  Aligned_cols=129  Identities=47%  Similarity=0.825  Sum_probs=112.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      ..+||+++|++++|||||++++.++++ ..+.++.+.++....+..++..+.+.+||+||++.+..++..++++++++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            458999999999999999999999988 5677888888888888888888999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      |||++++.+++.+.. |...+... ...+.|+++|+||+|+...+.+..++.
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~pi~vv~nK~Dl~~~~~~~~~~~  131 (165)
T cd01868          82 VYDITKKQTFENVER-WLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTEEA  131 (165)
T ss_pred             EEECcCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECccccccccCCHHHH
Confidence            999999999999988 88888776 344689999999999977655544333

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04136 Rap_like Rap-like subfamily

Probab=99.96  E-value=3.7e-28  Score=162.08  Aligned_cols=124  Identities=33%  Similarity=0.571  Sum_probs=104.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|++|+|||||++++..+.+ ..+.++.+ ......+.+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999888 44455554 344566778888899999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      |++++.+++.+.. |.+.+.......+.|+++|+||+|+.+.+.+..
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~  126 (163)
T cd04136          81 SITSQSSFNDLQD-LREQILRVKDTENVPMVLVGNKCDLEDERVVSR  126 (163)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceecH
Confidence            9999999999988 887777654456789999999999976555433

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01865 Rab3 Rab3 subfamily

Probab=99.96  E-value=5.3e-28  Score=162.07  Aligned_cols=122  Identities=46%  Similarity=0.884  Sum_probs=107.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|++|+|||||++++.++++ ..+.++.+.++....+..++..+.+.+|||+|++.+...+..+++.+|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            7999999999999999999999998 566777777777777777888899999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      |++++++++.+.. |...+... .....|+++|+||+|+..++.+
T Consensus        82 d~~~~~s~~~~~~-~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~  124 (165)
T cd01865          82 DITNEESFNAVQD-WSTQIKTY-SWDNAQVILVGNKCDMEDERVV  124 (165)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHh-CCCCCCEEEEEECcccCccccc
Confidence            9999999999988 98888765 3457899999999999766544

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.96  E-value=4.4e-28  Score=163.65  Aligned_cols=130  Identities=31%  Similarity=0.509  Sum_probs=109.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      .+||+++|.+|+|||||++++.++.+ ..+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            47999999999999999999999998 45567766444 34567788889999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhh
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWH  144 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~  144 (154)
                      ||++++.+|+.+.. |...+.......+.|+++|+||+|+.+.+++..++...
T Consensus        81 ~d~~~~~Sf~~~~~-~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~  132 (172)
T cd04141          81 YSVTDRHSFQEASE-FKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRN  132 (172)
T ss_pred             EECCchhHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHH
Confidence            99999999999988 87777765445678999999999997766665544443

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04117 Rab15 Rab15 subfamily

Probab=99.96  E-value=6.1e-28  Score=161.30  Aligned_cols=124  Identities=46%  Similarity=0.856  Sum_probs=109.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|++|+|||||++++.++.+ ..+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            4899999999999999999999998 556788887777778888888899999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      |++++++|+.+.. |.+.+... ...+.|+++|+||.|+..++++..
T Consensus        81 d~~~~~sf~~~~~-~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~  125 (161)
T cd04117          81 DISSERSYQHIMK-WVSDVDEY-APEGVQKILIGNKADEEQKRQVGD  125 (161)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECcccccccCCCH
Confidence            9999999999988 98888765 345789999999999987766543

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=6.8e-28  Score=168.46  Aligned_cols=130  Identities=35%  Similarity=0.554  Sum_probs=113.4

Q ss_pred             CCCCcccCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccc
Q 031704            1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTS   79 (154)
Q Consensus         1 m~~~~~~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   79 (154)
                      |+.++........+||+++|.+|+|||||+++++.+.+ ..+.++.+.++....+..++..+.+.+|||+|++.+..++.
T Consensus         1 ~~~~~~~~~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~   80 (219)
T PLN03071          1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD   80 (219)
T ss_pred             CCCcccCCcCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhH
Confidence            44444455557889999999999999999999999988 56788888888777777788889999999999999999999


Q ss_pred             ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        80 ~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      .+++.+|++|+|||++++.+++.+.. |...+...  ..+.|+++||||+|+..
T Consensus        81 ~~~~~~~~~ilvfD~~~~~s~~~i~~-w~~~i~~~--~~~~piilvgNK~Dl~~  131 (219)
T PLN03071         81 GYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRV--CENIPIVLCGNKVDVKN  131 (219)
T ss_pred             HHcccccEEEEEEeCCCHHHHHHHHH-HHHHHHHh--CCCCcEEEEEEchhhhh
Confidence            99999999999999999999999988 99888765  35689999999999953

>cd01866 Rab2 Rab2 subfamily

Probab=99.96  E-value=8.8e-28  Score=161.48  Aligned_cols=129  Identities=47%  Similarity=0.853  Sum_probs=111.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      ...+||+++|.+|+|||||++++.++++ ..+.++.+.+.....+..++..+.+.+||+||++.+..+...+++.+|+++
T Consensus         2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il   81 (168)
T cd01866           2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   81 (168)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence            3568999999999999999999999988 455677777887788888888889999999999999998888999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG  141 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~  141 (154)
                      +|+|++++.+++.+.. |...++.. ..++.|+++|+||.|+..++.+..++
T Consensus        82 ~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~  131 (168)
T cd01866          82 LVYDITRRETFNHLTS-WLEDARQH-SNSNMTIMLIGNKCDLESRREVSYEE  131 (168)
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEECcccccccCCCHHH
Confidence            9999999999999988 99888775 34678999999999998655544433

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.96  E-value=7.3e-28  Score=162.18  Aligned_cols=127  Identities=40%  Similarity=0.760  Sum_probs=110.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc-ccccccccCccEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR-TLTSSYYRGAQGIIM   90 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~v~   90 (154)
                      .+||+++|++|+|||||+++++...+ ..+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            58999999999999999999999888 4566777777777788888889999999999998886 467788899999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLS  140 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~  140 (154)
                      |||++++.+++.+.. |.+.+.......+.|+++|+||+|+...+++...
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~  130 (170)
T cd04115          82 VYDVTNMASFHSLPS-WIEECEQHSLPNEVPRILVGNKCDLREQIQVPTD  130 (170)
T ss_pred             EEECCCHHHHHhHHH-HHHHHHHhcCCCCCCEEEEEECccchhhcCCCHH
Confidence            999999999999988 9988887655678999999999999776655443

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04176 Rap2 Rap2 subgroup

Probab=99.96  E-value=7.1e-28  Score=160.95  Aligned_cols=123  Identities=35%  Similarity=0.580  Sum_probs=104.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|.+|+|||||++++..+.+ ..+.++.+ ......+.+++..+.+.+|||||++.+..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            7999999999999999999999988 44445443 455567778888889999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhh
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLF  138 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~  138 (154)
                      |++++.+++++.. |...+.......+.|+++|+||+|+..++.+.
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~  125 (163)
T cd04176          81 SLVNQQTFQDIKP-MRDQIVRVKGYEKVPIILVGNKVDLESEREVS  125 (163)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhcCccC
Confidence            9999999999988 87777765445678999999999997655443

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.96  E-value=9.1e-28  Score=160.93  Aligned_cols=126  Identities=63%  Similarity=1.004  Sum_probs=109.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      .+||+++|++|+|||||++++.++.+ ..+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            48999999999999999999999888 55667777777777788888889999999999999999899999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhh
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLS  140 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~  140 (154)
                      ||++++++++.+.. |+..+... ...+.|+++|+||+|+..++.+...
T Consensus        82 ~d~~~~~s~~~l~~-~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~~~~~  128 (166)
T cd01869          82 YDVTDQESFNNVKQ-WLQEIDRY-ASENVNKLLVGNKCDLTDKRVVDYS  128 (166)
T ss_pred             EECcCHHHHHhHHH-HHHHHHHh-CCCCCcEEEEEEChhcccccCCCHH
Confidence            99999999999998 98888765 3456899999999999766555433

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=4.9e-28  Score=166.80  Aligned_cols=123  Identities=29%  Similarity=0.507  Sum_probs=106.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEEC-----CeEEEEEEEeCCCcccccccccccccCccE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-----GKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (154)
                      +||+++|..++|||||++++..+.+ ..+.++.+.++....+.++     +..+.+++|||+|++.+..+...+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            5899999999999999999999998 5667788877777766664     467899999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhc------------------CCCCCcEEEEEeCCCCCCchhh
Q 031704           88 IIMVYDVTRRDTFTNLADIWAKEIDLYS------------------TNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~------------------~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      +++|||++++.+++.+.. |...+....                  ...+.|++|||||+|+.+++.+
T Consensus        81 iIlVyDvtn~~Sf~~l~~-W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~  147 (202)
T cd04102          81 IILVHDLTNRKSSQNLQR-WSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKES  147 (202)
T ss_pred             EEEEEECcChHHHHHHHH-HHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhccc
Confidence            999999999999999987 988886531                  1246899999999999876544

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.96  E-value=7e-28  Score=161.21  Aligned_cols=125  Identities=29%  Similarity=0.628  Sum_probs=108.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|++|+|||||++++.++++ ..+.++.+.++....+..++..+.+++|||||++.+..++..+++.+|++++||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            4899999999999999999999998 666788888887778888889999999999999999988999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCC----CCCcEEEEEeCCCCCCchhhhh
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTN----QDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~----~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      |++++.+++.+.. |...+......    .+.|+++|+||+|+..++....
T Consensus        81 D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~  130 (168)
T cd04119          81 DVTDRQSFEALDS-WLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSE  130 (168)
T ss_pred             ECCCHHHHHhHHH-HHHHHHHhccccccCCCceEEEEEEchhcccccccCH
Confidence            9999999999887 98888776443    5689999999999975444433

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.96  E-value=1.1e-27  Score=162.12  Aligned_cols=118  Identities=31%  Similarity=0.561  Sum_probs=103.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|.+|+|||||++++..+.+ ..+.|+.+..+. .....++..+.+.+|||+|++.+...+..+++.+|++++||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            7999999999999999999999998 667788776554 34567888899999999999999998988999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      |++++++|+.+...|...+...  ..+.|++||+||+|+.+.
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~  120 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDD  120 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhC
Confidence            9999999999986698888765  346899999999999654

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PTZ00369 Ras-like protein; Provisional

Probab=99.96  E-value=8.9e-28  Score=164.42  Aligned_cols=126  Identities=33%  Similarity=0.559  Sum_probs=107.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      ..+||+++|.+|+|||||++++.++.+ ..+.++.+.++ ...+.+++..+.+.+|||||++++..++..+++.+|++++
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            358999999999999999999999888 45566666555 4566788889999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      |||++++++++.+.. |...+.......+.|+++|+||+|+...+.+..
T Consensus        83 v~D~s~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~  130 (189)
T PTZ00369         83 VYSITSRSSFEEIAS-FREQILRVKDKDRVPMILVGNKCDLDSERQVST  130 (189)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCH
Confidence            999999999999988 887777664556889999999999976655443

>PLN03110 Rab GTPase; Provisional

Probab=99.96  E-value=1.9e-27  Score=165.97  Aligned_cols=128  Identities=47%  Similarity=0.845  Sum_probs=113.3

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      .+..+||+++|++|+|||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.++++
T Consensus         9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~   88 (216)
T PLN03110          9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA   88 (216)
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence            45679999999999999999999999988 56678888888888888999999999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      ++|||+++..+++.+.. |+..+... ...+.|+++|+||+|+...+.+..
T Consensus        89 ilv~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~  137 (216)
T PLN03110         89 LLVYDITKRQTFDNVQR-WLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAE  137 (216)
T ss_pred             EEEEECCChHHHHHHHH-HHHHHHHh-CCCCCeEEEEEEChhcccccCCCH
Confidence            99999999999999888 98888765 446789999999999976655543

>PLN03118 Rab family protein; Provisional

Probab=99.96  E-value=2.2e-27  Score=165.03  Aligned_cols=135  Identities=68%  Similarity=1.135  Sum_probs=116.2

Q ss_pred             cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (154)
Q Consensus         7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   86 (154)
                      .......+||+++|.+|+|||||+++|++..+..+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus         8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d   87 (211)
T PLN03118          8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQ   87 (211)
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence            34556679999999999999999999999988777888888887788888888899999999999999999999999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG  141 (154)
Q Consensus        87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~  141 (154)
                      ++++|||++++++|+.+...|...+.......+.|+++|+||+|+...+.+...+
T Consensus        88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~  142 (211)
T PLN03118         88 GIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREE  142 (211)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHH
Confidence            9999999999999999988788877765445567999999999997665554333

>cd04124 RabL2 RabL2 subfamily

Probab=99.96  E-value=1.8e-27  Score=158.97  Aligned_cols=117  Identities=38%  Similarity=0.670  Sum_probs=101.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|.+|+|||||++++..+.+ +...++.+.+.......+++..+.+.+|||+|++.+..++..+++++|++++|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            4899999999999999999999988 455566666666666777888999999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      |++++.+++.+.. |...+...  ..+.|+++|+||+|+..
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~--~~~~p~ivv~nK~Dl~~  118 (161)
T cd04124          81 DVTRKITYKNLSK-WYEELREY--RPEIPCIVVANKIDLDP  118 (161)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHh--CCCCcEEEEEECccCch
Confidence            9999999999887 88888654  34689999999999953

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01875 RhoG RhoG subfamily

Probab=99.96  E-value=1.6e-27  Score=163.44  Aligned_cols=119  Identities=29%  Similarity=0.562  Sum_probs=104.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      .+||+++|..++|||||++++..+.+ ..+.|+.+..+. ..+.+++..+.+.+|||+|++.++.++..+++++|++++|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            38999999999999999999999998 566778776553 4567788999999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      ||++++++|+.+...|...+...  ..+.|++|||||+||.+.
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~  122 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRND  122 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcC
Confidence            99999999999986698877664  347899999999999654

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.96  E-value=1.6e-27  Score=160.59  Aligned_cols=121  Identities=38%  Similarity=0.713  Sum_probs=106.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   93 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d   93 (154)
                      ||+++|.+|+|||||++++.++.+ ..+.++.+.++....+.+++..+.+++|||||++.+..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            799999999999999999999998 5677888888887888888889999999999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      ++++.+++.+.. |.+.+.........|+++|+||+|+...++
T Consensus        82 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~  123 (170)
T cd04108          82 LTDVASLEHTRQ-WLEDALKENDPSSVLLFLVGTKKDLSSPAQ  123 (170)
T ss_pred             CcCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEChhcCcccc
Confidence            999999999988 988776543344578999999999965543

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04110 Rab35 Rab35 subfamily

Probab=99.96  E-value=2.9e-27  Score=163.11  Aligned_cols=128  Identities=55%  Similarity=0.912  Sum_probs=110.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      +..+||+++|++|+|||||++++.+..+ ..+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+++++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            3579999999999999999999999988 456788887777777888888889999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG  141 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~  141 (154)
                      +|||++++++++.+.. |++.+...  ....|++||+||+|+...+.+...+
T Consensus        84 lv~D~~~~~s~~~~~~-~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~  132 (199)
T cd04110          84 VVYDVTNGESFVNVKR-WLQEIEQN--CDDVCKVLVGNKNDDPERKVVETED  132 (199)
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECcccccccccCHHH
Confidence            9999999999999988 88887764  3567999999999997665544333

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04116 Rab9 Rab9 subfamily

Probab=99.96  E-value=3.8e-27  Score=158.47  Aligned_cols=121  Identities=40%  Similarity=0.754  Sum_probs=105.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      +..+||+++|++++|||||++++.++.+ ....++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            4679999999999999999999999888 456677777777778888999999999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcC---CCCCcEEEEEeCCCCC
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYST---NQDCIKLLVGNKVDKV  132 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~ivv~nK~Dl~  132 (154)
                      +|||++++++++.+.. |...+.....   ..+.|+++|+||+|+.
T Consensus        83 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~  127 (170)
T cd04116          83 LTFAVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVVLGNKNDIP  127 (170)
T ss_pred             EEEECCCHHHHHhHHH-HHHHHHHhcccccCCCCcEEEEEECcccc
Confidence            9999999999999887 8776655432   2467999999999996

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04113 Rab4 Rab4 subfamily

Probab=99.95  E-value=2.3e-27  Score=158.15  Aligned_cols=124  Identities=47%  Similarity=0.847  Sum_probs=107.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|++++|||||+++++++++ ....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            5899999999999999999999998 566677777777777888888899999999999999988899999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      |+++++++..+.. |...+... ...+.|+++|+||+|+...+.+..
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~  125 (161)
T cd04113          81 DITNRTSFEALPT-WLSDARAL-ASPNIVVILVGNKSDLADQREVTF  125 (161)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEEchhcchhccCCH
Confidence            9999999999988 88777655 456789999999999976555433

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04112 Rab26 Rab26 subfamily

Probab=99.95  E-value=2.2e-27  Score=162.74  Aligned_cols=124  Identities=44%  Similarity=0.842  Sum_probs=107.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      +||+++|++|+|||||++++.++.+.  .+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            58999999999999999999999883  4567777677766778888899999999999999988888899999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      +|+++.++++.+.. |...+... ...+.|+++|+||+|+..++.+..
T Consensus        81 ~D~~~~~s~~~~~~-~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~  126 (191)
T cd04112          81 YDITNKASFDNIRA-WLTEIKEY-AQEDVVIMLLGNKADMSGERVVKR  126 (191)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEEcccchhccccCH
Confidence            99999999999988 88888776 345789999999999976554443

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.95  E-value=3.1e-27  Score=157.79  Aligned_cols=128  Identities=31%  Similarity=0.519  Sum_probs=105.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      .+||+++|++|+|||||+++++++.+ ..+.++.+.. ......+++..+.+.+|||||++++..++..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            47999999999999999999998887 4444555433 344556788888999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      ||+++..+++.+.. |...+.......+.|+++|+||+|+..++.+...+.
T Consensus        81 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~  130 (164)
T cd04145          81 FSVTDRGSFEEVDK-FHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEG  130 (164)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHHhCCCCCCEEEEeeCccccccceecHHHH
Confidence            99999999999988 777776654556789999999999976655444333

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04175 Rap1 Rap1 subgroup

Probab=99.95  E-value=2.3e-27  Score=158.67  Aligned_cols=124  Identities=35%  Similarity=0.592  Sum_probs=104.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|.+|+|||||++++..+.+ ..+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            6999999999999999999998877 44556665444 356777888899999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      |+++..+++.+.. |...+.......+.|+++|+||+|+...+.+..
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~  126 (164)
T cd04175          81 SITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVVGK  126 (164)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcchhccEEcH
Confidence            9999999999988 777776554456789999999999976554443

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.95  E-value=2e-27  Score=158.50  Aligned_cols=128  Identities=41%  Similarity=0.724  Sum_probs=114.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   93 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d   93 (154)
                      ||+++|++++|||||+++|.++.+ ..+.++.+.+.....+..++..+.+.+||++|++.+......+++++|++++|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            799999999999999999999998 5666777788888899999999999999999999999888889999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhh
Q 031704           94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWH  144 (154)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~  144 (154)
                      ++++++++.+.. |.+.+.... ..+.|++|||||+|+.+.+++..++...
T Consensus        81 ~~~~~S~~~~~~-~~~~i~~~~-~~~~~iivvg~K~D~~~~~~v~~~~~~~  129 (162)
T PF00071_consen   81 VTDEESFENLKK-WLEEIQKYK-PEDIPIIVVGNKSDLSDEREVSVEEAQE  129 (162)
T ss_dssp             TTBHHHHHTHHH-HHHHHHHHS-TTTSEEEEEEETTTGGGGSSSCHHHHHH
T ss_pred             cccccccccccc-ccccccccc-cccccceeeeccccccccccchhhHHHH
Confidence            999999999997 999998873 3568999999999998877776655543

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.95  E-value=2.5e-28  Score=155.62  Aligned_cols=132  Identities=55%  Similarity=0.877  Sum_probs=120.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      ...+|.+++|.+|+|||+|+.++-...| ..+..++|.++..+.+.+++..+++.|||++|++.|+.+...+++..++++
T Consensus         6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~   85 (198)
T KOG0079|consen    6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI   85 (198)
T ss_pred             HHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence            4457889999999999999999999998 677788999999999999999999999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhh
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHF  145 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~  145 (154)
                      +|||+++.+||.+... |++.++..+  +..|-++||||+|+...+.+..++.+.+
T Consensus        86 vVYDVTn~ESF~Nv~r-WLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~dAr~~  138 (198)
T KOG0079|consen   86 VVYDVTNGESFNNVKR-WLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTEDARAF  138 (198)
T ss_pred             EEEECcchhhhHhHHH-HHHHHHhcC--ccccceecccCCCCccceeeehHHHHHH
Confidence            9999999999999999 999999874  4778999999999998888877666554

>cd04109 Rab28 Rab28 subfamily

Probab=99.95  E-value=2.5e-27  Score=165.27  Aligned_cols=125  Identities=34%  Similarity=0.590  Sum_probs=107.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECC-eEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGG-KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      +||+++|.+|+|||||+++|.++.+ ..+.++.+.++....+.+++ ..+.+.+|||+|++.+..++..+++.+|++++|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            4899999999999999999999988 56678888888777777754 578999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCC--CCCcEEEEEeCCCCCCchhhhh
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTN--QDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      ||++++++|+.+.. |...+......  .+.|+++|+||+|+.+.+++..
T Consensus        81 ~D~t~~~s~~~~~~-w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~  129 (215)
T cd04109          81 YDVTNSQSFENLED-WYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKD  129 (215)
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhccccCCCceEEEEEECcccccccccCH
Confidence            99999999999987 98888776332  3568999999999976665543

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.95  E-value=2.4e-27  Score=165.47  Aligned_cols=119  Identities=23%  Similarity=0.545  Sum_probs=104.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      ++||+++|.+|+|||||++++..+.+ ..+.|+.+..+. ..+.+++..+.+.+|||+|++.+..+++.+++.+|++++|
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv   79 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC   79 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence            37999999999999999999999998 466788776654 5677889999999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      ||++++++|+.+...|...+...  ..+.|++|||||+||.+.
T Consensus        80 fdis~~~Sf~~i~~~w~~~~~~~--~~~~piiLVgnK~DL~~~  120 (222)
T cd04173          80 FDISRPETLDSVLKKWQGETQEF--CPNAKVVLVGCKLDMRTD  120 (222)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEECcccccc
Confidence            99999999999977798877654  457899999999999653

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04111 Rab39 Rab39 subfamily

Probab=99.95  E-value=3.2e-27  Score=164.26  Aligned_cols=126  Identities=43%  Similarity=0.775  Sum_probs=107.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEE-CCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVAL-GGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      .+||+++|++|+|||||+++++++.+ ..+.++.+.++....+.+ ++..+.+.+|||+|++.+...+..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            58999999999999999999999988 445677777777777766 4668899999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      |||++++++++.+.. |...+.........|++||+||+|+...+.+..
T Consensus        82 v~D~~~~~Sf~~l~~-~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~  129 (211)
T cd04111          82 VFDITNRESFEHVHD-WLEEARSHIQPHRPVFILVGHKCDLESQRQVTR  129 (211)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEccccccccccCH
Confidence            999999999999988 888777654445678999999999987655543

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.95  E-value=5.9e-27  Score=157.30  Aligned_cols=117  Identities=36%  Similarity=0.659  Sum_probs=103.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|++|||||||+++++.+.+ ..+.++.+.+.....+..++..+.+.+|||+|++.+......+++.+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            4899999999999999999998887 556777777777666777888899999999999999888888999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      |++++++++.+.. |...+.....  +.|+++|+||+|+..
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~--~~piiiv~nK~Dl~~  118 (166)
T cd00877          81 DVTSRVTYKNVPN-WHRDLVRVCG--NIPIVLCGNKVDIKD  118 (166)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhCC--CCcEEEEEEchhccc
Confidence            9999999999987 9888887633  799999999999973

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04125 RabA_like RabA-like subfamily

Probab=99.95  E-value=5.2e-27  Score=160.40  Aligned_cols=124  Identities=53%  Similarity=0.871  Sum_probs=108.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|++|+|||||++++.++.+. .+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            48999999999999999999999984 47788887777778888888899999999999999989999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      |++++++++.+.. |+..+... .....|+++|+||+|+...+.+..
T Consensus        81 d~~~~~s~~~i~~-~~~~i~~~-~~~~~~~ivv~nK~Dl~~~~~v~~  125 (188)
T cd04125          81 DVTDQESFENLKF-WINEINRY-ARENVIKVIVANKSDLVNNKVVDS  125 (188)
T ss_pred             ECcCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECCCCcccccCCH
Confidence            9999999999999 98888775 344589999999999986655543

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.95  E-value=3.9e-27  Score=157.44  Aligned_cols=124  Identities=34%  Similarity=0.584  Sum_probs=103.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|++|+|||||++++.+..+. .+.++.+ +........++..+.+.+|||||++++..++..+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            48999999999999999999998883 3444444 334456677888899999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      |++++++++.+.. |...+.......+.|+++|+||+|+.+.+.+..
T Consensus        80 d~~~~~s~~~~~~-~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~  125 (164)
T smart00173       80 SITDRQSFEEIKK-FREQILRVKDRDDVPIVLVGNKCDLESERVVST  125 (164)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceEcH
Confidence            9999999999988 777766654555789999999999976655443

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.95  E-value=6.2e-27  Score=156.11  Aligned_cols=125  Identities=34%  Similarity=0.657  Sum_probs=106.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEEC--CeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG--GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      +||+++|.+++|||||++++.++.+ ..+.++.+.++....+.+.  +..+.+++|||||++.+...+..+++.+|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            4899999999999999999999888 5566777777766666666  778899999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG  141 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~  141 (154)
                      |||++++++++.+.. |...+...  ..+.|+++|+||+|+..++.+..++
T Consensus        81 v~d~~~~~s~~~l~~-~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~  128 (162)
T cd04106          81 VFSTTDRESFEAIES-WKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEE  128 (162)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEEChhcccccCCCHHH
Confidence            999999999999888 88887654  3578999999999997765554433

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.95  E-value=1.2e-26  Score=154.46  Aligned_cols=118  Identities=33%  Similarity=0.644  Sum_probs=101.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|++|+|||||++++.++.+ ..+.++.+..+ .....+++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            7999999999999999999999888 45556655443 456677888889999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      |+++..+++.+.. |...+.......+.|+++|+||+|+..
T Consensus        81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~  120 (162)
T cd04138          81 AINSRKSFEDIHT-YREQIKRVKDSDDVPMVLVGNKCDLAA  120 (162)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccc
Confidence            9999999999887 777766654556789999999999975

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04128 Spg1 Spg1p

Probab=99.95  E-value=7.5e-27  Score=158.96  Aligned_cols=116  Identities=28%  Similarity=0.637  Sum_probs=103.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|..|+|||||++++..+.+ ..+.|+.+.++....+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            4899999999999999999999998 557888888888788888999999999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                      |++++.+++.+.. |.+.+... .....| ++|+||+|+.
T Consensus        81 D~t~~~s~~~i~~-~~~~~~~~-~~~~~p-ilVgnK~Dl~  117 (182)
T cd04128          81 DLTRKSTLNSIKE-WYRQARGF-NKTAIP-ILVGTKYDLF  117 (182)
T ss_pred             ECcCHHHHHHHHH-HHHHHHHh-CCCCCE-EEEEEchhcc
Confidence            9999999999988 98888765 234456 6889999995

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.95  E-value=7.3e-27  Score=165.67  Aligned_cols=130  Identities=25%  Similarity=0.445  Sum_probs=107.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|.+|+|||||+++++++.+. .+.++.+ ++....+.+++..+.+.+|||+|++.+..+...++..+|++++||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999884 5556665 555667788899999999999999999888888889999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhc--------CCCCCcEEEEEeCCCCCCchhhhhhhhhhh
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYS--------TNQDCIKLLVGNKVDKVCPWRLFLSGFWHF  145 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~--------~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~  145 (154)
                      |+++.++|+.+.. |.+.+....        ...+.|+++|+||+|+..++++..+++..+
T Consensus        80 dv~~~~Sf~~i~~-~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~  139 (247)
T cd04143          80 SLDNRESFEEVCR-LREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQL  139 (247)
T ss_pred             eCCCHHHHHHHHH-HHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHH
Confidence            9999999999988 776665431        234689999999999986666666555543

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.95  E-value=2.2e-26  Score=155.65  Aligned_cols=117  Identities=31%  Similarity=0.572  Sum_probs=101.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|.+|+|||||+.++..+.+ ..+.++.+..+ ...+..++..+.+.+|||+|++.+..++..+++++|++++||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            6999999999999999999999988 56667765433 345567888899999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      |++++++|+.+...|...+...  ..+.|++||+||+|+.+
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~  119 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRD  119 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhcc
Confidence            9999999999976688877664  34789999999999964

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04140 ARHI_like ARHI subfamily

Probab=99.95  E-value=1.8e-26  Score=154.60  Aligned_cols=124  Identities=27%  Similarity=0.416  Sum_probs=101.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|.+|+|||||+++++++.+ ..+.++.+.++ ......+...+.+.+|||+|++.+..+...+++.+|++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999988 45556555433 445566778889999999999999988888899999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcC--CCCCcEEEEEeCCCCCCchhhhh
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYST--NQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      |+++.++++.+.. |...+.....  ..+.|+++|+||+|+...+++..
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~  128 (165)
T cd04140          81 SVTSKQSLEELKP-IYELICEIKGNNIEKIPIMLVGNKCDESHKREVSS  128 (165)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHHhcCCCCCCCEEEEEECccccccCeecH
Confidence            9999999999988 7766665422  25789999999999976555543

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=1.9e-26  Score=166.74  Aligned_cols=126  Identities=31%  Similarity=0.541  Sum_probs=108.5

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEEC-------------CeEEEEEEEeCCCccc
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-------------GKKMKLAIWDTAGQER   73 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~D~~g~~~   73 (154)
                      .+....+||+++|..|+|||||++++.++.+ ..+.++.+.++....+.++             +..+.++||||+|++.
T Consensus        16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr   95 (334)
T PLN00023         16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER   95 (334)
T ss_pred             CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence            3455779999999999999999999999988 5667888888877766664             2568899999999999


Q ss_pred             ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcC-----------CCCCcEEEEEeCCCCCCc
Q 031704           74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYST-----------NQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        74 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~-----------~~~~~~ivv~nK~Dl~~~  134 (154)
                      ++.++..++++++++|+|||+++..+++.+.. |++.+.....           ..+.|++|||||+||..+
T Consensus        96 frsL~~~yyr~AdgiILVyDITdr~SFenL~k-Wl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~  166 (334)
T PLN00023         96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQK-WASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK  166 (334)
T ss_pred             hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence            99999999999999999999999999999988 9988877532           125799999999999754

>cd01861 Rab6 Rab6 subfamily

Probab=99.95  E-value=1.8e-26  Score=153.72  Aligned_cols=123  Identities=41%  Similarity=0.716  Sum_probs=105.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|++++|||||++++++.++ ..+.++.+.++....+..++..+.+++||+||++.+...+..+++++|++++|+
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            4899999999999999999999988 566777777777888888888889999999999999988899999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhh
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLF  138 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~  138 (154)
                      |++++++++.+.. |...+... ...+.|+++++||+|+...++..
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~  124 (161)
T cd01861          81 DITNRQSFDNTDK-WIDDVRDE-RGNDVIIVLVGNKTDLSDKRQVS  124 (161)
T ss_pred             ECcCHHHHHHHHH-HHHHHHHh-CCCCCEEEEEEEChhccccCccC
Confidence            9999999999887 87776654 33478999999999996554443

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04144 Ras2 Ras2 subfamily

Probab=99.95  E-value=8.7e-27  Score=159.63  Aligned_cols=125  Identities=34%  Similarity=0.604  Sum_probs=102.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   93 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d   93 (154)
                      ||+++|.+|+|||||+++|..+.+ ..+.++.+..+ .....+++..+.+.+|||||++.+...+..+++.+|++++|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            689999999999999999999888 44556655443 3455677888899999999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhcC--CCCCcEEEEEeCCCCCCchhhhhhh
Q 031704           94 VTRRDTFTNLADIWAKEIDLYST--NQDCIKLLVGNKVDKVCPWRLFLSG  141 (154)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~Dl~~~~~~~~~~  141 (154)
                      +++..+++.+.. |.+.+.....  ..+.|+++|+||+|+.+.+.+...+
T Consensus        80 ~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~  128 (190)
T cd04144          80 ITSRSTFERVER-FREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEE  128 (190)
T ss_pred             CCCHHHHHHHHH-HHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHH
Confidence            999999999988 8777765422  2568999999999997665554433

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PLN03108 Rab family protein; Provisional

Probab=99.95  E-value=2.5e-26  Score=159.66  Aligned_cols=130  Identities=47%  Similarity=0.809  Sum_probs=111.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      +..+||+++|++|+|||||++++.+.++ ..+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|+++
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            3569999999999999999999999988 456677777777778888888899999999999999988889999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      +|||++++++++.+.. |...+... .....|+++|+||+|+...+.+..++.
T Consensus        84 lv~D~~~~~s~~~l~~-~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~  134 (210)
T PLN03108         84 LVYDITRRETFNHLAS-WLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEG  134 (210)
T ss_pred             EEEECCcHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECccCccccCCCHHHH
Confidence            9999999999999888 88776654 345789999999999987665554443

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.95  E-value=2e-26  Score=157.26  Aligned_cols=118  Identities=31%  Similarity=0.581  Sum_probs=99.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      +||+++|++|+|||||++++.++.+ ..+.++.+..+.. .+... +..+.+.+|||||++.+...+..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            4899999999999999999999988 4555665555433 34454 6788999999999999999888899999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      ||++++++|+.+...|...+...  ..+.|+++|+||+|+...
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~  120 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKD  120 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhC
Confidence            99999999999977688777654  357899999999999654

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04142 RRP22 RRP22 subfamily

Probab=99.95  E-value=2.1e-26  Score=158.66  Aligned_cols=128  Identities=25%  Similarity=0.344  Sum_probs=101.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------ccccccC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TSSYYRG   84 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~   84 (154)
                      +||+++|.+|+|||||++++.++++ ..+.|+.+.+.....+.+++..+.+.+|||||...+...        ....++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999988 456677766666666778888899999999997544322        2334788


Q ss_pred             ccEEEEEEECCCcchHHHHHHHHHHHHhhhc--CCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYS--TNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        85 ~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      +|++++|||++++++++.+.. |.+.+....  ...+.|+++|+||+|+...+.+...++
T Consensus        81 ad~iilv~D~~~~~S~~~~~~-~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~  139 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKL-LRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVL  139 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHH-HHHHHHHhcccCCCCCCEEEEEECccccccccccHHHH
Confidence            999999999999999999988 777666542  246789999999999976655544433

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04134 Rho3 Rho3 subfamily

Probab=99.95  E-value=3.7e-26  Score=156.38  Aligned_cols=119  Identities=30%  Similarity=0.504  Sum_probs=101.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   93 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d   93 (154)
                      ||+++|++|+|||||++++.++.+. .+.++.+..+. ..+..++..+.+.+|||+|++.+..++..+++++|++++|||
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            8999999999999999999999984 45666665543 455667888999999999999999998889999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      ++++++|+.+...|...+...  ..+.|+++|+||+|+.+.+.
T Consensus        81 v~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~  121 (189)
T cd04134          81 VDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARN  121 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChh
Confidence            999999999876688888764  34789999999999976553

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.95  E-value=3.1e-26  Score=154.50  Aligned_cols=116  Identities=31%  Similarity=0.603  Sum_probs=98.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   94 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~   94 (154)
                      |+++|++|+|||||++++.++.+. .+.++.... ....+..++..+.+.+|||||++.+..++..+++.+|++++|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            589999999999999999999984 444555433 345567788889999999999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +++++|+.+...|...+...  ..+.|+++|+||+|+...
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~  117 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLRED  117 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhC
Confidence            99999999977698888765  357899999999999653

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.95  E-value=3.3e-26  Score=152.75  Aligned_cols=124  Identities=44%  Similarity=0.760  Sum_probs=108.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|++++|||||+++++++++. ...++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   81 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY   81 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence            79999999999999999999999984 47788887787788888899999999999999998888888899999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      |++++++++.... |...+... .....|+++++||+|+...+....
T Consensus        82 d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~  126 (163)
T cd01860          82 DITSEESFEKAKS-WVKELQRN-ASPNIIIALVGNKADLESKRQVST  126 (163)
T ss_pred             ECcCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECccccccCcCCH
Confidence            9999999999888 88887766 346789999999999975544333

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01863 Rab18 Rab18 subfamily

Probab=99.95  E-value=4.2e-26  Score=152.01  Aligned_cols=118  Identities=74%  Similarity=1.192  Sum_probs=106.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|++|+|||||++++.+..+ ....++.+.++....+..++..+.+.+||+||++.+......+++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999999999999888 456777777777777777888899999999999999888888999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                      |++++.+++.+.. |.+.+..+....+.|+++|+||+|+.
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iv~nK~D~~  119 (161)
T cd01863          81 DVTRRDTFTNLET-WLNELETYSTNNDIVKMLVGNKIDKE  119 (161)
T ss_pred             ECCCHHHHHhHHH-HHHHHHHhCCCCCCcEEEEEECCccc
Confidence            9999999999888 99988887667789999999999997

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04126 Rab20 Rab20 subfamily

Probab=99.95  E-value=2.2e-26  Score=160.49  Aligned_cols=114  Identities=37%  Similarity=0.658  Sum_probs=96.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   93 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d   93 (154)
                      +||+++|.+++|||||++++..+++....++.+..+....+    ..+.+.+|||+|++.+..++..+++.+|++++|||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D   76 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD   76 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence            48999999999999999999999986667777765544333    46789999999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      ++++++|+.+.. |...+... ...+.|++||+||+||.+
T Consensus        77 vt~~~Sf~~l~~-~~~~l~~~-~~~~~piIlVgNK~DL~~  114 (220)
T cd04126          77 VSNVQSLEELED-RFLGLTDT-ANEDCLFAVVGNKLDLTE  114 (220)
T ss_pred             CCCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECccccc
Confidence            999999999988 55444443 345789999999999975

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd01892 Miro2 Miro2 subfamily

Probab=99.95  E-value=3.5e-26  Score=153.94  Aligned_cols=122  Identities=24%  Similarity=0.317  Sum_probs=104.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      ...+||+++|.+|+|||||+++++++.+.  .+.|+.+..+....+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            35799999999999999999999999884  5567777777777778888888999999999999988888889999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      ++|+|++++.+++.+.. |...+..   ..+.|+++|+||+|+.+.++
T Consensus        82 llv~d~~~~~s~~~~~~-~~~~~~~---~~~~p~iiv~NK~Dl~~~~~  125 (169)
T cd01892          82 CLVYDSSDPKSFSYCAE-VYKKYFM---LGEIPCLFVAAKADLDEQQQ  125 (169)
T ss_pred             EEEEeCCCHHHHHHHHH-HHHHhcc---CCCCeEEEEEEccccccccc
Confidence            99999999999998877 6665532   24689999999999975544

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.95  E-value=3.2e-26  Score=152.79  Aligned_cols=122  Identities=56%  Similarity=0.980  Sum_probs=106.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|++++|||||++++.+..+ ....++.+.++....+..++..+.+.+||+||++.+......+++.+|++++|+
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            5899999999999999999999887 555677777777777888888889999999999999988899999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      |++++.+++.+.. |...+..+ ...+.|+++|+||+|+...++.
T Consensus        81 d~~~~~s~~~~~~-~l~~~~~~-~~~~~pivvv~nK~D~~~~~~~  123 (164)
T smart00175       81 DITNRESFENLKN-WLKELREY-ADPNVVIMLVGNKSDLEDQRQV  123 (164)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEEchhcccccCC
Confidence            9999999999888 98888776 3358899999999999764433

Rab GTPases are implicated in vesicle trafficking.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.94  E-value=5.8e-26  Score=153.30  Aligned_cols=117  Identities=32%  Similarity=0.562  Sum_probs=99.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +|++++|++|+|||||++++.++.+. .+.++. .+.....+.+++..+.+.+|||||++.+...+..+++.+|++++||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            58999999999999999999998884 444443 4444556778888899999999999999999988999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      |++++.+|+.+...|...+...  ..+.|+++|+||+|+..
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~  118 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRT  118 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhcc
Confidence            9999999999876688777653  34689999999999964

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.94  E-value=3.5e-26  Score=152.82  Aligned_cols=123  Identities=30%  Similarity=0.562  Sum_probs=103.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC--CC-CCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD--TF-EELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~--~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      +||+++|++|+|||||++++..+  .+ ..+.++.+.++....+..+ +..+.+.+|||||++.+..++..+++++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            48999999999999999999865  45 5667778777766666664 56789999999999999888889999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      +|+|++++++++.+.. |.+.+...  ..+.|+++|+||+|+...+++..
T Consensus        81 ~v~d~~~~~s~~~~~~-~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~  127 (164)
T cd04101          81 LVYDVSNKASFENCSR-WVNKVRTA--SKHMPGVLVGNKMDLADKAEVTD  127 (164)
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECcccccccCCCH
Confidence            9999999999998877 88887765  25689999999999976655433

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04118 Rab24 Rab24 subfamily

Probab=99.94  E-value=5.9e-26  Score=155.70  Aligned_cols=117  Identities=34%  Similarity=0.684  Sum_probs=104.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      +||+++|.+|+|||||++++.++.+.  .+.++.+.++....+.+++..+.+.+||++|++.+..+...+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            48999999999999999999999884  4777888778778888999999999999999999988888889999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      ||+++..+++.+.. |.+.+...  ..+.|+++|+||+|+..
T Consensus        81 ~d~~~~~s~~~~~~-~~~~i~~~--~~~~piilv~nK~Dl~~  119 (193)
T cd04118          81 YDLTDSSSFERAKF-WVKELQNL--EEHCKIYLCGTKSDLIE  119 (193)
T ss_pred             EECCCHHHHHHHHH-HHHHHHhc--CCCCCEEEEEEcccccc
Confidence            99999999999877 88887764  34689999999999864

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04135 Tc10 TC10 subfamily

Probab=99.94  E-value=1.1e-25  Score=151.74  Aligned_cols=118  Identities=33%  Similarity=0.595  Sum_probs=100.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|++|+|||||++++..+.+. .+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++.+|++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            48999999999999999999999884 4455544 333445677888899999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      |++++++|+.+...|.+.+...  ..+.|+++|+||+|+.+.
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~  119 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDD  119 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcC
Confidence            9999999999987788888754  567899999999999654

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd01862 Rab7 Rab7 subfamily

Probab=99.94  E-value=7e-26  Score=152.31  Aligned_cols=122  Identities=39%  Similarity=0.733  Sum_probs=103.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|++++|||||++++.+..+ ....++.+.++....+..++..+.+.+||+||++.+...+..+++++|++++++
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            4899999999999999999999987 455566676777777788888899999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcC---CCCCcEEEEEeCCCCCCchh
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYST---NQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      |++++.+++.... |.+.+.....   ..+.|+++|+||+|+..++.
T Consensus        81 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  126 (172)
T cd01862          81 DVTNPKSFESLDS-WRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ  126 (172)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCccCCCCceEEEEEECcccccccc
Confidence            9999999988876 7766554433   23689999999999985443

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04123 Rab21 Rab21 subfamily

Probab=99.94  E-value=1e-25  Score=149.87  Aligned_cols=124  Identities=40%  Similarity=0.742  Sum_probs=104.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|++|+|||||+++++++.+ ....++.+.+.....+...+..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            5899999999999999999999888 344455555566666777778889999999999999988888899999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      |+++.++++.+.. |.+.+.... ..+.|+++|+||+|+..++++..
T Consensus        81 d~~~~~s~~~~~~-~~~~i~~~~-~~~~piiiv~nK~D~~~~~~~~~  125 (162)
T cd04123          81 DITDADSFQKVKK-WIKELKQMR-GNNISLVIVGNKIDLERQRVVSK  125 (162)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECcccccccCCCH
Confidence            9999999999888 888877663 34789999999999986655433

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04114 Rab30 Rab30 subfamily

Probab=99.94  E-value=1.8e-25  Score=150.02  Aligned_cols=126  Identities=50%  Similarity=0.903  Sum_probs=107.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      ...+|++++|++|+|||||++++..+.+ ....++.+.+.....+.+.+..+.+.+||+||++.+...+..+++.+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            4569999999999999999999998877 455677776777777788888899999999999999888888999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhh
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLF  138 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~  138 (154)
                      +|+|+++..+++.+.. |...+... ...+.|+++|+||+|+.+.+++.
T Consensus        85 ~v~d~~~~~s~~~~~~-~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~  131 (169)
T cd04114          85 LTYDITCEESFRCLPE-WLREIEQY-ANNKVITILVGNKIDLAERREVS  131 (169)
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECcccccccccC
Confidence            9999999999998887 88877665 44568999999999997665543

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04177 RSR1 RSR1 subgroup

Probab=99.94  E-value=1.6e-25  Score=150.42  Aligned_cols=124  Identities=31%  Similarity=0.557  Sum_probs=104.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|.+|+|||||++++.++.+ ..+.++.+.. ....+.+++..+.+++|||||++.+..++..+++.++++++||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            6999999999999999999999888 4455555533 3456677888899999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      |++++++++.... |...+.......+.|+++++||.|+...+.+..
T Consensus        81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~  126 (168)
T cd04177          81 SVTSEASLNELGE-LREQVLRIKDSDNVPMVLVGNKADLEDDRQVSR  126 (168)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhhCCCCCCEEEEEEChhccccCccCH
Confidence            9999999999988 887776654556789999999999976655433

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.94  E-value=1.1e-26  Score=149.75  Aligned_cols=142  Identities=34%  Similarity=0.600  Sum_probs=122.9

Q ss_pred             CCCCcccCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccc
Q 031704            1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTS   79 (154)
Q Consensus         1 m~~~~~~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   79 (154)
                      |+...........+|++++|..=+|||+|+-|+..++| .....+....+..+.+.+.+....++||||.|++.|..+-+
T Consensus         1 ~~~~~~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGP   80 (218)
T KOG0088|consen    1 MMLETNVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGP   80 (218)
T ss_pred             CCccccccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCc
Confidence            44455555566789999999999999999999999999 55555666677888888888999999999999999999999


Q ss_pred             ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhh
Q 031704           80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWH  144 (154)
Q Consensus        80 ~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~  144 (154)
                      -+++.++++++|||++++++|+.... |...++.. ....+-+++||||+||..++.+...+...
T Consensus        81 IYYRgSnGalLVyDITDrdSFqKVKn-WV~Elr~m-lGnei~l~IVGNKiDLEeeR~Vt~qeAe~  143 (218)
T KOG0088|consen   81 IYYRGSNGALLVYDITDRDSFQKVKN-WVLELRTM-LGNEIELLIVGNKIDLEEERQVTRQEAEA  143 (218)
T ss_pred             eEEeCCCceEEEEeccchHHHHHHHH-HHHHHHHH-hCCeeEEEEecCcccHHHhhhhhHHHHHH
Confidence            99999999999999999999999999 99999886 45567899999999999999886655443

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.94  E-value=8.1e-26  Score=151.36  Aligned_cols=123  Identities=30%  Similarity=0.495  Sum_probs=98.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-ccccccccccCccEEEEEE
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-FRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~~v~v~   92 (154)
                      ||+++|++|+|||||+++++.+.+ ..+.++.... ....+.+++..+.+.+||+||++. .......+++.+|++++|+
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            689999999999999999998887 3444544333 345567788889999999999885 3445667889999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcC-CCCCcEEEEEeCCCCCCchhhhh
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      |++++.+++.+.. |...+..... ..+.|+++|+||+|+...+.+..
T Consensus        80 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~  126 (165)
T cd04146          80 SITDRSSFDEISQ-LKQLIREIKKRDREIPVILVGNKADLLHYRQVST  126 (165)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCchHHhCccCH
Confidence            9999999999988 8877776533 45789999999999966554443

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.94  E-value=1.3e-25  Score=154.70  Aligned_cols=112  Identities=32%  Similarity=0.596  Sum_probs=102.0

Q ss_pred             EcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCc
Q 031704           19 IGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR   97 (154)
Q Consensus        19 ~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~   97 (154)
                      +|.+++|||||+++++.+.+ ..+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++++|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999888 45778888888888888888999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           98 DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        98 ~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      .+++.+.. |.+.+...+  .+.|++|||||+|+..
T Consensus        81 ~S~~~i~~-w~~~i~~~~--~~~piilvgNK~Dl~~  113 (200)
T smart00176       81 VTYKNVPN-WHRDLVRVC--ENIPIVLCGNKVDVKD  113 (200)
T ss_pred             HHHHHHHH-HHHHHHHhC--CCCCEEEEEECccccc
Confidence            99999988 999888763  5789999999999964

Ran is involved in the active transport of proteins through nuclear pores.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.94  E-value=2.6e-25  Score=148.20  Aligned_cols=122  Identities=20%  Similarity=0.336  Sum_probs=97.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   93 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d   93 (154)
                      +||+++|++|+|||||+.+++.+.+....++.+..+ ...+.+++..+.+.+|||+|++.     ..+++.+|++++|||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d   74 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS   74 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence            489999999999999999999988844333334344 46678888889999999999965     245678999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC--chhhhhhhh
Q 031704           94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC--PWRLFLSGF  142 (154)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~--~~~~~~~~~  142 (154)
                      ++++++|+.+.. |.+.+.......+.|+++||||+|+..  ++++..++.
T Consensus        75 ~~~~~sf~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~  124 (158)
T cd04103          75 LENEASFQTVYN-LYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARA  124 (158)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHH
Confidence            999999999988 888887764446789999999999853  455554443

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04148 RGK RGK subfamily

Probab=99.94  E-value=2.3e-25  Score=155.89  Aligned_cols=125  Identities=25%  Similarity=0.382  Sum_probs=100.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc-CccEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR-GAQGIIM   90 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~~~~v~   90 (154)
                      +||+++|++|+|||||++++..+.+.  .+.++.+.+.....+.+++..+.+.+||++|++.  .....+++ .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999988873  3444444356667778888889999999999982  22344566 8999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG  141 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~  141 (154)
                      |||++++.+++.+.+ |...+.......+.|+++|+||+|+...+++...+
T Consensus        79 V~d~td~~S~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~  128 (221)
T cd04148          79 VYSVTDRSSFERASE-LRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQE  128 (221)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhccccceecHHH
Confidence            999999999999888 88777765444678999999999997766655443

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.93  E-value=1.4e-25  Score=151.84  Aligned_cols=119  Identities=27%  Similarity=0.487  Sum_probs=96.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      ...+||+++|++|+|||||++++..+++..+.|+.+....  .+..  ..+.+.+||+||++.++..+..+++++|++++
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            3458999999999999999999988877666677765543  2333  45789999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      |+|++++.+++.....|...+... ...+.|++||+||+|+.+.
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~~  129 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNED-ELRDAVILVFANKQDLPDA  129 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCH-hhcCCcEEEEEeCcCcccC
Confidence            999999999998888444444332 3356899999999999654

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04149 Arf6 Arf6 subfamily

Probab=99.93  E-value=1.4e-25  Score=150.91  Aligned_cols=117  Identities=29%  Similarity=0.493  Sum_probs=95.1

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      ..+||+++|.+++|||||++++..+.+..+.|+.+.+..  .+.  ...+.+.+|||+|++.++..+..+++++|++++|
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v   83 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   83 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            458999999999999999999998877666677775543  222  2457899999999999999899999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      +|++++.+++.....|.+.+... ...+.|++||+||+|+.+
T Consensus        84 ~D~t~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~  124 (168)
T cd04149          84 VDSADRDRIDEARQELHRIINDR-EMRDALLLVFANKQDLPD  124 (168)
T ss_pred             EeCCchhhHHHHHHHHHHHhcCH-hhcCCcEEEEEECcCCcc
Confidence            99999999988877444444332 335689999999999964

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd00157 Rho Rho (Ras homology) family

Probab=99.93  E-value=9e-25  Score=146.77  Aligned_cols=119  Identities=34%  Similarity=0.602  Sum_probs=99.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|++|+|||||+++|+++.+ ..+.++.. .........++..+.+.+||+||++.+.......++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            5899999999999999999999988 44445444 333445567788899999999999988888888889999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      |++++.++......|...+...  ..+.|+++|+||+|+....
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~  120 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHY--CPNVPIILVGTKIDLRDDE  120 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEccHHhhhch
Confidence            9999999998877788877765  3479999999999997655

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd00154 Rab Rab family

Probab=99.93  E-value=7.2e-25  Score=144.85  Aligned_cols=127  Identities=53%  Similarity=0.912  Sum_probs=108.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|++++|||||++++.+..+ ....++.+.++....+..++..+.+.+||+||+..+......+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            4899999999999999999999998 445778888888888888888899999999999998888899999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      |++++++++.+.. |...+... .....|+++++||+|+..+.....++.
T Consensus        81 d~~~~~~~~~~~~-~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~  128 (159)
T cd00154          81 DITNRESFENLDK-WLKELKEY-APENIPIILVGNKIDLEDQRQVSTEEA  128 (159)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEEcccccccccccHHHH
Confidence            9999999999888 88887776 335789999999999974444433333

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.93  E-value=2.2e-25  Score=148.67  Aligned_cols=116  Identities=26%  Similarity=0.511  Sum_probs=94.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   93 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d   93 (154)
                      +||+++|.+++|||||++++..+.+..+.|+.+....  .+..  ..+.+.+||+||++.+...+..+++++|++++|+|
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D   76 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence            4899999999999999999988888666777765443  2322  45789999999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      ++++.+++.+...|.+.+... ...+.|++|++||+|+.+.
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~  116 (159)
T cd04150          77 SNDRERIGEAREELQRMLNED-ELRDAVLLVFANKQDLPNA  116 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHhcH-HhcCCCEEEEEECCCCCCC
Confidence            999999998888444444332 3346899999999999654

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.93  E-value=2.9e-25  Score=152.20  Aligned_cols=132  Identities=32%  Similarity=0.493  Sum_probs=114.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      ..+|++++|.+|+|||+|+.+++++.+ ..+.|+.+ +.+.+.+.+++..+.+.|+||+|++++..+...+++++|++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            358999999999999999999999999 55566666 6667888899999999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHF  145 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~  145 (154)
                      ||+++++.||+.+.. +.+.+.+.......|+++||||+|+.+.+.+..++...+
T Consensus        81 Vysitd~~SF~~~~~-l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~l  134 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQ-LREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKAL  134 (196)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHH
Confidence            999999999999999 555554444566789999999999999888888775544

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.93  E-value=1e-24  Score=145.39  Aligned_cols=119  Identities=36%  Similarity=0.618  Sum_probs=99.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|++|+|||||+++++...+ ..+.++.+.. .......++..+.+.+||+||++.+...+..+++.++++++|+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            4899999999999999999999887 4444444433 3455667888899999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      |++++.+++.... |...+.......+.|+++|+||+|+...
T Consensus        80 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~D~~~~  120 (164)
T cd04139          80 SITDMESFTATAE-FREQILRVKDDDNVPLLLVGNKCDLEDK  120 (164)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEccccccc
Confidence            9999999999988 6655555434567899999999999763

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.93  E-value=9.2e-25  Score=150.53  Aligned_cols=117  Identities=28%  Similarity=0.484  Sum_probs=99.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC-CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   93 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d   93 (154)
                      ||+++|.+|+|||||+++++++.+.. +.++.. +.....+.+.+..+.+++||+||+..+..++..+++.+|++++|+|
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            68999999999999999999998843 344443 4455567778888899999999999998888888999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      ++++.+++.+.. |...+.......+.|+++|+||+|+..
T Consensus        80 ~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~  118 (198)
T cd04147          80 VDDPESFEEVER-LREEILEVKEDKFVPIVVVGNKADSLE  118 (198)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEcccccc
Confidence            999999999988 877777664556799999999999965

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.93  E-value=5.6e-25  Score=149.87  Aligned_cols=120  Identities=28%  Similarity=0.458  Sum_probs=99.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEE-CCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVAL-GGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      .+||+++|.+|+|||||++++..+.+....++.+.+.....+.. ++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   82 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFV   82 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEE
Confidence            48999999999999999999999888656677766555544444 34678999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      +|+++..+++.+.. |...+.......+.|+++|+||+|+..
T Consensus        83 ~D~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~NK~D~~~  123 (183)
T cd04152          83 VDSVDVERMEEAKT-ELHKITRFSENQGVPVLVLANKQDLPN  123 (183)
T ss_pred             EECCCHHHHHHHHH-HHHHHHhhhhcCCCcEEEEEECcCccc
Confidence            99999988888877 666555543456789999999999964

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.93  E-value=1.5e-24  Score=146.38  Aligned_cols=118  Identities=32%  Similarity=0.642  Sum_probs=99.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      .||+++|++|+|||||++++.++.+. .+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..+++++|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            68999999999999999999999884 4556655444 345677888899999999999999888888899999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      |+++.++++.+...|...+...  ..+.|+++|+||+|+...
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~  120 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND  120 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccC
Confidence            9999999999877688877654  347899999999998643

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.93  E-value=4.8e-25  Score=149.99  Aligned_cols=120  Identities=27%  Similarity=0.478  Sum_probs=96.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      ...+||+++|.+++|||||++++..+.+..+.|+.+.+..  .+.  ...+.+++||+||++.++.++..+++++|++++
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~--~~~--~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            3458999999999999999999998888666677775543  233  345789999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      |+|+++.++++.....+...+... ...+.|++||+||+|+.+..
T Consensus        91 V~D~s~~~s~~~~~~~l~~~l~~~-~~~~~piilv~NK~Dl~~~~  134 (181)
T PLN00223         91 VVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAM  134 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcCH-hhCCCCEEEEEECCCCCCCC
Confidence            999999999988877333333221 23578999999999997553

>cd01893 Miro1 Miro1 subfamily

Probab=99.93  E-value=9.4e-25  Score=146.47  Aligned_cols=120  Identities=29%  Similarity=0.403  Sum_probs=97.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   93 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d   93 (154)
                      +|++++|.+|+|||||++++.++.+....+...... .....+++..+.+.+|||||.+.+...+..+++.+|++++|||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS   79 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence            389999999999999999999999854444433222 2334556677899999999998887777777899999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      ++++.+++.+...|.+.++...  .+.|+++|+||+|+.+.+.
T Consensus        80 ~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~  120 (166)
T cd01893          80 VDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSS  120 (166)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccc
Confidence            9999999998766888887652  3789999999999976543

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.93  E-value=8.9e-26  Score=146.17  Aligned_cols=136  Identities=43%  Similarity=0.775  Sum_probs=118.4

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEE-CCeEEEEEEEeCCCcccccccccccccCccE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVAL-GGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (154)
                      ..+.++++++|.+-+|||||+.++..++++ -.-|+.|.++..+.+.+ ++..+++++|||+|++.|+.+...+++++-+
T Consensus         5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg   84 (213)
T KOG0091|consen    5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG   84 (213)
T ss_pred             eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence            347799999999999999999999999994 44588888877666655 5778999999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhcC-CCCCcEEEEEeCCCCCCchhhhhhhhhhhh
Q 031704           88 IIMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKVCPWRLFLSGFWHFL  146 (154)
Q Consensus        88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~  146 (154)
                      +++|||++++++|+.... |......+.. ....-+.+||+|+||...+++..+|..++-
T Consensus        85 vllvyditnr~sfehv~~-w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklA  143 (213)
T KOG0091|consen   85 VLLVYDITNRESFEHVEN-WVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLA  143 (213)
T ss_pred             eEEEEeccchhhHHHHHH-HHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHH
Confidence            999999999999999999 9988777655 344577899999999999999888877653

>cd04154 Arl2 Arl2 subfamily

Probab=99.93  E-value=1e-24  Score=147.27  Aligned_cols=119  Identities=26%  Similarity=0.439  Sum_probs=95.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      ...+||+++|++|+|||||++++.+..+..+.++.+..  ...+.++  .+.+.+||+||++.+...+..+++.+|++++
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~--~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   87 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQ--IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIW   87 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            45589999999999999999999988766666766633  3344444  4788999999999988888889999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      |+|++++.+++.... |...+.......+.|+++|+||+|+...
T Consensus        88 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  130 (173)
T cd04154          88 VVDSSDRLRLDDCKR-ELKELLQEERLAGATLLILANKQDLPGA  130 (173)
T ss_pred             EEECCCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcccccC
Confidence            999999999988877 5554433223457899999999999654

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.93  E-value=2.7e-24  Score=147.76  Aligned_cols=117  Identities=23%  Similarity=0.470  Sum_probs=91.0

Q ss_pred             eEEEEEEcCCCCCHHHHHH-HHhcCCC------CCCCCccee-e-eEEE-------EEEECCeEEEEEEEeCCCcccccc
Q 031704           13 LFKLLLIGDSGVGKSTLLL-SFTSDTF------EELSPTIGV-D-FKIK-------HVALGGKKMKLAIWDTAGQERFRT   76 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~-~l~~~~~------~~~~~~~~~-~-~~~~-------~~~~~~~~~~~~i~D~~g~~~~~~   76 (154)
                      .+||+++|..|+|||||+. ++.++.+      ..+.|+.+. + +...       ...+++..+.+.+|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            3799999999999999996 5654432      344566642 2 2211       125678899999999999875  2


Q ss_pred             cccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        77 ~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      ....+++++|++++|||++++.+|+.+...|.+.+....  .+.|+++||||+||.+
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~  134 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRY  134 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccc
Confidence            455678999999999999999999999866988887653  4689999999999964

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4e-25  Score=140.29  Aligned_cols=137  Identities=45%  Similarity=0.816  Sum_probs=125.2

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   86 (154)
                      -+.++.+|.+++|.-|+|||||++.+..+++ .+-..+.|.++.++.+.+.+.++++++|||.|+++|+...+.+++.+.
T Consensus         6 ynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaa   85 (215)
T KOG0097|consen    6 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA   85 (215)
T ss_pred             cchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence            4567899999999999999999999999999 666678899999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhhh
Q 031704           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFL  146 (154)
Q Consensus        87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~  146 (154)
                      +.++|||++.+.+...+.. |+...+.. .+++.-+++++||.||.+.+.+..+|...|.
T Consensus        86 galmvyditrrstynhlss-wl~dar~l-tnpnt~i~lignkadle~qrdv~yeeak~fa  143 (215)
T KOG0097|consen   86 GALMVYDITRRSTYNHLSS-WLTDARNL-TNPNTVIFLIGNKADLESQRDVTYEEAKEFA  143 (215)
T ss_pred             ceeEEEEehhhhhhhhHHH-HHhhhhcc-CCCceEEEEecchhhhhhcccCcHHHHHHHH
Confidence            9999999999999999999 99888876 7788899999999999999999887776553

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.92  E-value=8.6e-25  Score=146.53  Aligned_cols=115  Identities=24%  Similarity=0.391  Sum_probs=94.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   94 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~   94 (154)
                      |+++|++|+|||||++++.++.+ ..+.|+.+...    ..++...+.+.+||++|++.++.++..+++++|++++|+|+
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            78999999999999999999877 55567766432    23445568899999999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      +++.++..... |...+...  ..+.|+++|+||+|+..++.+
T Consensus        78 t~~~s~~~~~~-~l~~~~~~--~~~~piilv~NK~Dl~~~~~~  117 (164)
T cd04162          78 ADSERLPLARQ-ELHQLLQH--PPDLPLVVLANKQDLPAARSV  117 (164)
T ss_pred             CCHHHHHHHHH-HHHHHHhC--CCCCcEEEEEeCcCCcCCCCH
Confidence            99999988877 66555433  257899999999999766544

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.92  E-value=1.2e-24  Score=148.10  Aligned_cols=118  Identities=26%  Similarity=0.494  Sum_probs=95.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      ..+||+++|++++|||||++++..+.+..+.|+.+.++.  .+..  ..+.+.+|||+|++.++..+..+++++|++|+|
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v   91 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV   91 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence            458999999999999999999988888656677665443  2333  457899999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +|++++++++.....|.+.+... ...+.|++||+||.|+.+.
T Consensus        92 ~D~t~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~~  133 (182)
T PTZ00133         92 VDSNDRERIGDAREELERMLSED-ELRDAVLLVFANKQDLPNA  133 (182)
T ss_pred             EeCCCHHHHHHHHHHHHHHHhCH-hhcCCCEEEEEeCCCCCCC
Confidence            99999999998877444444332 2346899999999999653

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.92  E-value=2.7e-24  Score=145.85  Aligned_cols=123  Identities=33%  Similarity=0.459  Sum_probs=99.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      .||+++|.+|+|||||++++.+..+. .+.++.+..+ ...+..++..+.+.+||+||++++...+..++..++++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            58999999999999999999998883 3455554333 455667777888999999999999888888899999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhh
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLF  138 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~  138 (154)
                      |+++..+++.+.. |...+.......+.|+++|+||+|+...+...
T Consensus        81 d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~  125 (180)
T cd04137          81 SVTSRKSFEVVKV-IYDKILDMLGKESVPIVLVGNKSDLHTQRQVS  125 (180)
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEchhhhhcCccC
Confidence            9999999999988 54444444355678999999999997655443

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04158 ARD1 ARD1 subfamily

Probab=99.92  E-value=2e-24  Score=145.33  Aligned_cols=115  Identities=29%  Similarity=0.534  Sum_probs=93.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   94 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~   94 (154)
                      ||+++|.+++|||||++++.+..+..+.++.+....  .+..  ..+.+.+|||||+..+...+..+++++|++++|+|+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   76 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS   76 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence            689999999999999999999877666677665443  2322  457899999999999998899999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +++.+++.+.. |...+.......+.|++||+||+|+.+.
T Consensus        77 s~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~  115 (169)
T cd04158          77 SHRDRVSEAHS-ELAKLLTEKELRDALLLIFANKQDVAGA  115 (169)
T ss_pred             CcHHHHHHHHH-HHHHHhcChhhCCCCEEEEEeCcCcccC
Confidence            99999999888 5555543323446799999999999643

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.92  E-value=3.5e-24  Score=136.19  Aligned_cols=114  Identities=30%  Similarity=0.613  Sum_probs=90.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC---CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFE---ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      ||+|+|++|+|||||+++|.+..+.   ...+..+.+..............+.+||++|++.+...+...+.++|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998875   3334445556666667777777799999999998888777779999999999


Q ss_pred             EECCCcchHHHHHHH--HHHHHhhhcCCCCCcEEEEEeCCC
Q 031704           92 YDVTRRDTFTNLADI--WAKEIDLYSTNQDCIKLLVGNKVD  130 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~--~~~~~~~~~~~~~~~~ivv~nK~D  130 (154)
                      ||++++.+++.+.++  |+..+...  ..+.|++||+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence            999999999998763  55555543  45599999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd00876 Ras Ras family

Probab=99.92  E-value=4.4e-24  Score=141.70  Aligned_cols=123  Identities=36%  Similarity=0.600  Sum_probs=100.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   93 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d   93 (154)
                      ||+++|++|+|||||++++++..+ ....++.. +.....+..++..+.+.+||+||++.+......+++.+|++++|+|
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998877 44445544 5555667777778899999999999988888889999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704           94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      ++++++++.+.. |...+.........|+++|+||+|+...+....
T Consensus        80 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~  124 (160)
T cd00876          80 ITDRESFEEIKG-YREQILRVKDDEDIPIVLVGNKCDLENERQVSK  124 (160)
T ss_pred             CCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCcccccceecH
Confidence            999999999988 555555543446789999999999987554433

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.92  E-value=3e-24  Score=144.24  Aligned_cols=116  Identities=26%  Similarity=0.434  Sum_probs=94.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   94 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~   94 (154)
                      +|+++|+++||||||++++.++....+.|+.+.+  ...+..  ..+.+.+||+||++.++.++..+++++|++++|+|+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~--~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~   76 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFT--PTKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS   76 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCCccccCcccce--EEEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence            4899999999999999999977335666776654  233333  357889999999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ++..+++.+.. |+..+.......+.|+++|+||+|+.+.+
T Consensus        77 s~~~s~~~~~~-~l~~l~~~~~~~~~piliv~NK~Dl~~~~  116 (167)
T cd04161          77 SDDDRVQEVKE-ILRELLQHPRVSGKPILVLANKQDKKNAL  116 (167)
T ss_pred             CchhHHHHHHH-HHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence            99999998888 66666544344578999999999997655

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2.6e-26  Score=148.06  Aligned_cols=134  Identities=36%  Similarity=0.716  Sum_probs=116.9

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEEC---------CeEEEEEEEeCCCcccccccc
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG---------GKKMKLAIWDTAGQERFRTLT   78 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~g~~~~~~~~   78 (154)
                      ..++.+|++.+|.+|+||||++.++..+++ ..-..+.|+++..+.+-++         +..+++++|||+|+++|+.+.
T Consensus         5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT   84 (219)
T KOG0081|consen    5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT   84 (219)
T ss_pred             cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence            345678999999999999999999999999 6777888888776665442         357899999999999999999


Q ss_pred             cccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhh
Q 031704           79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFW  143 (154)
Q Consensus        79 ~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~  143 (154)
                      ..+++.+-+++++||+++..+|.+.+. |..+++.+.-..+..++++|||+||.+.+.+..++..
T Consensus        85 TAFfRDAMGFlLiFDlT~eqSFLnvrn-WlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~  148 (219)
T KOG0081|consen   85 TAFFRDAMGFLLIFDLTSEQSFLNVRN-WLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAA  148 (219)
T ss_pred             HHHHHhhccceEEEeccchHHHHHHHH-HHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHH
Confidence            999999999999999999999999999 9999988766667779999999999999988665544

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.92  E-value=1.9e-23  Score=145.60  Aligned_cols=121  Identities=36%  Similarity=0.593  Sum_probs=105.9

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      ....+|++++|++|||||||+++++.+.+ ..+.++.+.++....+..++..+.+.+|||+|++.+...+..++++++++
T Consensus         6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~   85 (215)
T PTZ00132          6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA   85 (215)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence            34558999999999999999999888887 67778888888777777788899999999999999988888889999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      ++|||+++..++..+.. |...+...  ..+.|+++++||+|+.+
T Consensus        86 i~v~d~~~~~s~~~~~~-~~~~i~~~--~~~~~i~lv~nK~Dl~~  127 (215)
T PTZ00132         86 IIMFDVTSRITYKNVPN-WHRDIVRV--CENIPIVLVGNKVDVKD  127 (215)
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECccCcc
Confidence            99999999999999987 88887765  24689999999999864

>cd04151 Arl1 Arl1 subfamily

Probab=99.92  E-value=4.9e-24  Score=141.85  Aligned_cols=115  Identities=27%  Similarity=0.444  Sum_probs=91.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   94 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~   94 (154)
                      ||+++|++++|||||++++..+.+....++.+.+..  .+.  ...+.+.+|||||++.+...+..+++.+|++++|+|+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~   76 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVE--TVT--YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS   76 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence            689999999999999999988877555566554433  222  2457899999999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +++.++......|...+... ...+.|+++|+||+|+.++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~  115 (158)
T cd04151          77 TDRDRLGTAKEELHAMLEEE-ELKGAVLLVFANKQDMPGA  115 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhch-hhcCCcEEEEEeCCCCCCC
Confidence            99888877666454444432 3357899999999999754

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04129 Rho2 Rho2 subfamily

Probab=99.91  E-value=2.8e-23  Score=141.93  Aligned_cols=117  Identities=35%  Similarity=0.605  Sum_probs=96.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      .|++++|++|+|||||++++..+.+ ..+.++....+ ...+.+++..+.+.+||++|++.+.......++++|+++++|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            6999999999999999999998777 34444444333 345667788889999999999888877777789999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      |+++.++++.+...|...+...  ..+.|+++|+||+|+.+
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~  119 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQ  119 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhh
Confidence            9999999999987699888764  34699999999999854

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.91  E-value=6.8e-26  Score=142.36  Aligned_cols=125  Identities=38%  Similarity=0.718  Sum_probs=113.2

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 031704           17 LLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   94 (154)
Q Consensus        17 ~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~   94 (154)
                      +++|.+++|||||+-++..+.+  .....+.|+++..+.+..++.++++++|||.|+++|++....+++.+|+.+++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            3689999999999999988888  45678889999999999999999999999999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhh
Q 031704           95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFW  143 (154)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~  143 (154)
                      ++..||++... |+.++.++ .+....+.++|||||+.+++.+..++..
T Consensus        81 ankasfdn~~~-wlsei~ey-~k~~v~l~llgnk~d~a~er~v~~ddg~  127 (192)
T KOG0083|consen   81 ANKASFDNCQA-WLSEIHEY-AKEAVALMLLGNKCDLAHERAVKRDDGE  127 (192)
T ss_pred             ccchhHHHHHH-HHHHHHHH-HHhhHhHhhhccccccchhhccccchHH
Confidence            99999999999 99999998 6777889999999999888877554443

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.91  E-value=2.7e-24  Score=145.22  Aligned_cols=120  Identities=33%  Similarity=0.556  Sum_probs=107.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEE-CCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVAL-GGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      ..+|++++|..++|||+|+..+..+.| ..+.|+... .+...+.+ +++.+++.+|||.|+++|..+++..++++|+++
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFd-nys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFD-NYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEc-cceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            568999999999999999999999999 566777764 44556677 499999999999999999998888899999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +||++.++.+++++...|+.+++.++  ++.|+++||+|.||.++
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d  124 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDD  124 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhC
Confidence            99999999999999999999999985  88899999999999854

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.91  E-value=9.6e-24  Score=140.47  Aligned_cols=115  Identities=28%  Similarity=0.448  Sum_probs=92.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   94 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~   94 (154)
                      ||+++|++|+|||||++++.++.+....++.+.+..  .... +..+.+.+||+||++.+...+..+++.+|++++|+|+
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~--~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~   77 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVE--MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS   77 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceE--EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            589999999999999999999988666676664432  3333 2457899999999999888888899999999999999


Q ss_pred             CCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      +++.++..... |...+.......+.|+++|+||+|+..
T Consensus        78 ~~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~  115 (160)
T cd04156          78 SDEARLDESQK-ELKHILKNEHIKGVPVVLLANKQDLPG  115 (160)
T ss_pred             CcHHHHHHHHH-HHHHHHhchhhcCCCEEEEEECccccc
Confidence            99988888877 444443322335789999999999964

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.91  E-value=1.4e-23  Score=141.94  Aligned_cols=116  Identities=27%  Similarity=0.488  Sum_probs=94.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      .+||+++|++|+|||||++++..+.+....++.+.+..  .+..  ..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~   90 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVE--EIVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVI   90 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEE
Confidence            57999999999999999999999888666777765543  2333  3578999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      |+++++++......|.+.+... ...+.|+++++||+|+..
T Consensus        91 D~s~~~~~~~~~~~l~~~~~~~-~~~~~p~viv~NK~Dl~~  130 (174)
T cd04153          91 DSTDRERLPLTKEELYKMLAHE-DLRKAVLLVLANKQDLKG  130 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHhch-hhcCCCEEEEEECCCCCC
Confidence            9999988887777344444332 335689999999999965

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.91  E-value=1.6e-23  Score=139.20  Aligned_cols=116  Identities=27%  Similarity=0.476  Sum_probs=94.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   94 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~   94 (154)
                      ||+++|.+|+|||||++++.++......++.+.+...  +.+  ..+.+.+||+||++.+...+..+++.+|++++|+|+
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~   76 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS   76 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence            6899999999999999999999876666666655433  333  246899999999999998899999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ++++++..... |...+.......+.|+++|+||+|+....
T Consensus        77 ~~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~  116 (158)
T cd00878          77 SDRERIEEAKE-ELHKLLNEEELKGVPLLIFANKQDLPGAL  116 (158)
T ss_pred             CCHHHHHHHHH-HHHHHHhCcccCCCcEEEEeeccCCcccc
Confidence            99999998877 55444443345678999999999997644

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04157 Arl6 Arl6 subfamily

Probab=99.90  E-value=3.1e-23  Score=138.14  Aligned_cols=115  Identities=23%  Similarity=0.408  Sum_probs=91.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +|+++|++++|||||++++.+..+  ..+.|+.+.+..  .+.  ...+.+.+|||||++.+...+..+++.+|++++|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753  455666664332  222  34578999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhc--CCCCCcEEEEEeCCCCCCc
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYS--TNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~--~~~~~~~ivv~nK~Dl~~~  134 (154)
                      |++++.++..... |...+....  ...+.|+++|+||+|+..+
T Consensus        77 D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~  119 (162)
T cd04157          77 DSSDRLRLVVVKD-ELELLLNHPDIKHRRVPILFFANKMDLPDA  119 (162)
T ss_pred             eCCcHHHHHHHHH-HHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence            9999998887777 655554321  2357899999999999754

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.90  E-value=4.2e-23  Score=140.75  Aligned_cols=118  Identities=24%  Similarity=0.388  Sum_probs=92.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      .+.+||+++|.+|+|||||++++.++.+..+.++.+.+.  ..+..+  .+.+.+||+||++.++..+..+++.+|++++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~   90 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVY   90 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            455899999999999999999999987755555554432  233333  4678999999999988889999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      |+|+++++++..... +...+.......+.|+++|+||+|+..
T Consensus        91 vvD~~~~~~~~~~~~-~l~~l~~~~~~~~~piliv~NK~Dl~~  132 (184)
T smart00178       91 LVDAYDKERFAESKR-ELDALLSDEELATVPFLILGNKIDAPY  132 (184)
T ss_pred             EEECCcHHHHHHHHH-HHHHHHcChhhcCCCEEEEEeCccccC
Confidence            999999998888777 443333222345789999999999964

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.90  E-value=6.5e-23  Score=138.80  Aligned_cols=119  Identities=31%  Similarity=0.487  Sum_probs=99.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      .+.+||+++|+.+|||||+++++..+......|+.|.+.  ..+...  .+.+.+||.+|+..++..|..+++.+|++|+
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~--~~i~~~--~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIf   87 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNI--EEIKYK--GYSLTIWDLGGQESFRPLWKSYFQNADGIIF   87 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEE--EEEEET--TEEEEEEEESSSGGGGGGGGGGHTTESEEEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccccCccccccc--ceeeeC--cEEEEEEeccccccccccceeeccccceeEE
Confidence            577999999999999999999999887766777777544  344443  4678999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      |+|.++.+.+......+.+.+... ...+.|+++++||+|+.+.
T Consensus        88 VvDssd~~~l~e~~~~L~~ll~~~-~~~~~piLIl~NK~D~~~~  130 (175)
T PF00025_consen   88 VVDSSDPERLQEAKEELKELLNDP-ELKDIPILILANKQDLPDA  130 (175)
T ss_dssp             EEETTGGGGHHHHHHHHHHHHTSG-GGTTSEEEEEEESTTSTTS
T ss_pred             EEecccceeecccccchhhhcchh-hcccceEEEEeccccccCc
Confidence            999999999988888555555443 4568899999999999754

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd00879 Sar1 Sar1 subfamily

Probab=99.90  E-value=1.3e-22  Score=138.68  Aligned_cols=117  Identities=24%  Similarity=0.395  Sum_probs=93.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      +..||+++|++|+|||||++++.++.+..+.++.+.+.  ..+.+++  +.+.+||+||++.+...+..+++++|++++|
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV   93 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFL   93 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence            46899999999999999999999988765556655432  3444443  5788999999998888888889999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      +|+++..+++.... |...+.......+.|+++++||+|+.+
T Consensus        94 ~D~~~~~s~~~~~~-~~~~i~~~~~~~~~pvivv~NK~Dl~~  134 (190)
T cd00879          94 VDAADPERFQESKE-ELDSLLSDEELANVPFLILGNKIDLPG  134 (190)
T ss_pred             EECCcHHHHHHHHH-HHHHHHcCccccCCCEEEEEeCCCCCC
Confidence            99999988887776 554444332445689999999999964

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.89  E-value=6.2e-22  Score=130.41  Aligned_cols=121  Identities=31%  Similarity=0.480  Sum_probs=98.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|.+|+|||||++++.+..+ ..+.++.+.+.....+..++..+.+.+||+||+..+...+...++++++++.++
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~   81 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF   81 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence            7999999999999999999999887 455567776776666777777789999999999998888888888999999999


Q ss_pred             ECCCc-chHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           93 DVTRR-DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        93 d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      |.... .++......|...+...... +.|+++++||+|+..+.
T Consensus        82 d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~  124 (161)
T TIGR00231        82 DIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK  124 (161)
T ss_pred             EEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch
Confidence            98877 66666553466666665333 78999999999997653

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.89  E-value=1.6e-22  Score=135.41  Aligned_cols=115  Identities=27%  Similarity=0.469  Sum_probs=88.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF-------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (154)
                      +|+++|++|+|||||++++.+...       ..+.++.+....  .+.++  ...+.+|||||++.+...+..+++.+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999999999976432       122344443332  33333  4688999999999999888899999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +++|+|+++.++++.... |...+.......+.|+++++||+|+...
T Consensus        77 ~v~vvd~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~NK~D~~~~  122 (167)
T cd04160          77 IIYVIDSTDRERFEESKS-ALEKVLRNEALEGVPLLILANKQDLPDA  122 (167)
T ss_pred             EEEEEECchHHHHHHHHH-HHHHHHhChhhcCCCEEEEEEccccccC
Confidence            999999999888888777 5554444334457899999999999654

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.89  E-value=3.9e-22  Score=139.18  Aligned_cols=122  Identities=43%  Similarity=0.721  Sum_probs=103.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|++|+|||||++++....+. .+.++.+..+........+..+.+.+|||+|+++++..+..+++.++++++|+
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~   85 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY   85 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence            89999999999999999999999994 45566665555555555555788999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      |.++..++......|.+.+... .....|+++|+||+|+..+..
T Consensus        86 d~~~~~~~~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~  128 (219)
T COG1100          86 DSTLRESSDELTEEWLEELREL-APDDVPILLVGNKIDLFDEQS  128 (219)
T ss_pred             ecccchhhhHHHHHHHHHHHHh-CCCCceEEEEecccccccchh
Confidence            9999777777777799998876 235689999999999987753

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.89  E-value=5.3e-22  Score=131.19  Aligned_cols=115  Identities=29%  Similarity=0.503  Sum_probs=91.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   94 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~   94 (154)
                      |+++|++|+|||||++++.+.++ ..+.++.+....  .+..+  .+.+.+||+||++.+...+..+++.+|++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            78999999999999999999988 556666665443  23333  37899999999999999899999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ++..++..... |...+.......+.|+++|+||+|+....
T Consensus        78 ~~~~~~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~~  117 (159)
T cd04159          78 ADRTALEAAKN-ELHDLLEKPSLEGIPLLVLGNKNDLPGAL  117 (159)
T ss_pred             CCHHHHHHHHH-HHHHHHcChhhcCCCEEEEEeCccccCCc
Confidence            99888887776 44444332234578999999999997654

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.88  E-value=5.1e-22  Score=128.66  Aligned_cols=120  Identities=23%  Similarity=0.384  Sum_probs=101.6

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (154)
                      +..++.++|+++|..||||||++++|.+.......|+.+....+..+    +.+.+++||..|+..+++.|..|+...|+
T Consensus        11 k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdg   86 (185)
T KOG0073|consen   11 KLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDG   86 (185)
T ss_pred             HhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCe
Confidence            33556899999999999999999999999887778888855554444    56789999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                      +|+|+|.+++.++++....+...+... .-...|++|++||.|+.
T Consensus        87 lIwvvDssD~~r~~e~~~~L~~lL~ee-rlaG~~~Lvlank~dl~  130 (185)
T KOG0073|consen   87 LIWVVDSSDRMRMQECKQELTELLVEE-RLAGAPLLVLANKQDLP  130 (185)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhhh-hhcCCceEEEEecCcCc
Confidence            999999999999988877555555533 44567999999999996

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.88  E-value=4.4e-24  Score=140.35  Aligned_cols=133  Identities=29%  Similarity=0.577  Sum_probs=118.7

Q ss_pred             cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 031704            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (154)
Q Consensus         7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (154)
                      +...+..+|++++|..++||||++++++.+-| ..+..+.+.++......++++.+.+.+||++|++++..+...+++.+
T Consensus        14 e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrga   93 (246)
T KOG4252|consen   14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGA   93 (246)
T ss_pred             chhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccc
Confidence            44567789999999999999999999999888 67788888888888888888888899999999999999999999999


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      .+.++||+-+|+.+|+...+ |.+.+...  ...+|.++|-||+||.+..++...+.
T Consensus        94 qa~vLVFSTTDr~SFea~~~-w~~kv~~e--~~~IPtV~vqNKIDlveds~~~~~ev  147 (246)
T KOG4252|consen   94 QASVLVFSTTDRYSFEATLE-WYNKVQKE--TERIPTVFVQNKIDLVEDSQMDKGEV  147 (246)
T ss_pred             cceEEEEecccHHHHHHHHH-HHHHHHHH--hccCCeEEeeccchhhHhhhcchHHH
Confidence            99999999999999999999 99998874  57889999999999988777655443

>cd01890 LepA LepA subfamily

Probab=99.87  E-value=1.4e-21  Score=132.27  Aligned_cols=114  Identities=25%  Similarity=0.288  Sum_probs=84.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC--------CCCCC------cceeeeEEEEEEE-----CCeEEEEEEEeCCCccccc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF--------EELSP------TIGVDFKIKHVAL-----GGKKMKLAIWDTAGQERFR   75 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~--------~~~~~------~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~~~~~   75 (154)
                      +|+++|.+++|||||+++|++..-        ..+.+      +.+.+........     ++..+.+.+|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            689999999999999999987431        11111      2233443333222     5677899999999999999


Q ss_pred             ccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           76 TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        76 ~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      ..+..+++.+|++++|+|+++..+...... |....     ..+.|+++|+||+|+...
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~-~~~~~-----~~~~~iiiv~NK~Dl~~~  134 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLAN-FYLAL-----ENNLEIIPVINKIDLPSA  134 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHH-HHHHH-----HcCCCEEEEEECCCCCcC
Confidence            888889999999999999998776665554 43322     236789999999999643

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04155 Arl3 Arl3 subfamily

Probab=99.87  E-value=1.5e-21  Score=131.55  Aligned_cols=120  Identities=23%  Similarity=0.399  Sum_probs=93.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      ...++++++|++|+|||||++++.+..+....++.+.+.  ..+..++  ..+.+||++|+..+...+..+++.+|++++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~   87 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY   87 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence            346999999999999999999999987755666666433  3333443  578899999998888888888999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      |+|+++..++......+...+... ...+.|+++++||+|+.+..
T Consensus        88 v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~  131 (173)
T cd04155          88 VIDSADKKRLEEAGAELVELLEEE-KLAGVPVLVFANKQDLATAA  131 (173)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECCCCccCC
Confidence            999999888887776344443332 34578999999999996543

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.87  E-value=1.8e-21  Score=134.61  Aligned_cols=122  Identities=20%  Similarity=0.293  Sum_probs=91.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc-cEEEEEEE
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA-QGIIMVYD   93 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-~~~v~v~d   93 (154)
                      +|+++|++++|||||+++|..+++....++...+.........+....+.+||+||+..++..+..+++.+ +++|+|+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            68999999999999999999988754444433222222222123456799999999999998888889998 99999999


Q ss_pred             CCCc-chHHHHHHHHHHHHhhhc-CCCCCcEEEEEeCCCCCCchh
Q 031704           94 VTRR-DTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        94 ~~~~-~s~~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      +++. .++......|...+.... .....|+++++||+|+..+..
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~  126 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKP  126 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCC
Confidence            9987 677777774555544321 235789999999999976543

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=9.6e-22  Score=130.06  Aligned_cols=123  Identities=24%  Similarity=0.409  Sum_probs=104.9

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      ......+|+++|..+|||||+++++..++.....||.|.+.....+    +.+.+.+||..|++.++..|..++++.+++
T Consensus        13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l   88 (181)
T KOG0070|consen   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGL   88 (181)
T ss_pred             cCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEE
Confidence            3567799999999999999999999999997779999865554444    367899999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      |+|+|.++++.+...++.+...+... ...+.|+++++||.|+..+..
T Consensus        89 IfVvDS~Dr~Ri~eak~eL~~~l~~~-~l~~~~llv~aNKqD~~~als  135 (181)
T KOG0070|consen   89 IFVVDSSDRERIEEAKEELHRMLAEP-ELRNAPLLVFANKQDLPGALS  135 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHHcCc-ccCCceEEEEechhhccccCC
Confidence            99999999999999888565555543 456789999999999976554

>cd01878 HflX HflX subfamily

Probab=99.87  E-value=2.7e-21  Score=133.70  Aligned_cols=124  Identities=23%  Similarity=0.208  Sum_probs=87.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc---------ccccccc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER---------FRTLTSS   80 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~   80 (154)
                      +..++|+++|++|||||||++++++... ....+..+.+.....+..++. ..+.+|||||...         +.... .
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence            4458999999999999999999999875 222233333344444444433 3788999999632         11111 2


Q ss_pred             cccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhh
Q 031704           81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLF  138 (154)
Q Consensus        81 ~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~  138 (154)
                      .+..+|++++|+|++++.++..... |.+.+... ...+.|+++|+||+|+..+....
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~-~~~~l~~~-~~~~~~viiV~NK~Dl~~~~~~~  172 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIET-VEKVLKEL-GAEDIPMILVLNKIDLLDDEELE  172 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHH-HHHHHHHc-CcCCCCEEEEEEccccCChHHHH
Confidence            2567999999999999888877665 66666654 34568999999999997665443

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.87  E-value=1.7e-21  Score=149.78  Aligned_cols=134  Identities=23%  Similarity=0.209  Sum_probs=94.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEE--EEEEECCeEEEEEEEeCCCccc--------cccccccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKI--KHVALGGKKMKLAIWDTAGQER--------FRTLTSSY   81 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~   81 (154)
                      ..++|+++|.+|+|||||+|++++.......+..+.+...  .....++  ..+.+|||||.+.        +......+
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            4479999999999999999999998764334444444333  3333444  3578999999752        33334556


Q ss_pred             ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhhhhccccccC
Q 031704           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLSKFYCSS  154 (154)
Q Consensus        82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~S  154 (154)
                      ++++|++++|+|+++..++.. .. |.+.++.    .+.|+++|+||+|+.... ....+.+.++++.++++|
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~-~~-i~~~l~~----~~~piilV~NK~Dl~~~~-~~~~~~~~~g~~~~~~iS  180 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATD-EA-VARVLRR----SGKPVILAANKVDDERGE-ADAAALWSLGLGEPHPVS  180 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HH-HHHHHHH----cCCCEEEEEECccCCccc-hhhHHHHhcCCCCeEEEE
Confidence            889999999999998766543 22 4445543    478999999999996432 334556677777777776

>cd01898 Obg Obg subfamily

Probab=99.86  E-value=6.9e-21  Score=127.79  Aligned_cols=121  Identities=20%  Similarity=0.227  Sum_probs=82.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----cccccccc---ccCcc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----FRTLTSSY---YRGAQ   86 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~~   86 (154)
                      +|+++|.+|+|||||++++.+.+. ....+..+.......+..++ ...+.+|||||..+    .+.+...+   ++.+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            589999999999999999997654 11122222222222333332 24789999999632    22222232   44699


Q ss_pred             EEEEEEECCCc-chHHHHHHHHHHHHhhhcC-CCCCcEEEEEeCCCCCCchhh
Q 031704           87 GIIMVYDVTRR-DTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        87 ~~v~v~d~~~~-~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      ++++|+|+++. ++++.+.. |.+.+..... ....|+++|+||+|+.++...
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~-~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~  132 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKT-IRNELELYNPELLEKPRIVVLNKIDLLDEEEL  132 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHH-HHHHHHHhCccccccccEEEEEchhcCCchhh
Confidence            99999999998 78888876 8877766532 246899999999999765543

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=7e-21  Score=120.59  Aligned_cols=122  Identities=28%  Similarity=0.483  Sum_probs=106.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      .+.++|+.+|..++||||++..|..+......|+.|.+.....+    +.+.+++||..|++..+..|++++....++||
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            45799999999999999999999999988888999866554444    56789999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      |+|..+.+..+++++.+...+... ...+.++.|.+||.|+.+++.+
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~-em~~~~~LvlANkQDlp~A~~p  136 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDR-EMRDAIILILANKQDLPDAMKP  136 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCH-hhhcceEEEEecCcccccccCH
Confidence            999999999999998777776654 6678899999999999877754

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.85  E-value=1.7e-20  Score=125.76  Aligned_cols=120  Identities=19%  Similarity=0.179  Sum_probs=78.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc---------cccccc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL---------TSSYYR   83 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---------~~~~~~   83 (154)
                      ++|+++|.+|+|||||++++.+..+. ...+..+.+......  ....+.+.+|||||.......         ......
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            37999999999999999999998763 222222222222222  223578999999997431110         001112


Q ss_pred             CccEEEEEEECCCcchH--HHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhh
Q 031704           84 GAQGIIMVYDVTRRDTF--TNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLF  138 (154)
Q Consensus        84 ~~~~~v~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~  138 (154)
                      .+|++++|+|+++..++  +.... |.+.+...  ..+.|+++|+||+|+...+.+.
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~-~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~  132 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLS-LFEEIKPL--FKNKPVIVVLNKIDLLTFEDLS  132 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHH-HHHHHHhh--cCcCCeEEEEEccccCchhhHH
Confidence            36899999999987653  44444 66666543  2478999999999997665543

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.85  E-value=7.6e-21  Score=130.62  Aligned_cols=116  Identities=22%  Similarity=0.239  Sum_probs=85.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc--CCCCCC-------------CCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS--DTFEEL-------------SPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLT   78 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~--~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   78 (154)
                      .+|+++|.+++|||||+++|+.  +.+...             ..+.+.+.......+....+.+.+|||||++++....
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4899999999999999999997  444221             1234555555555555667889999999999999989


Q ss_pred             cccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        79 ~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ..+++.+|++++|+|+++.. +..... |...+..    .+.|+++|+||+|+...+
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~-~~~~~~~----~~~p~iiv~NK~Dl~~~~  133 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRF-VLKKALE----LGLKPIVVINKIDRPDAR  133 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHH-HHHHHHH----cCCCEEEEEECCCCCCCC
Confidence            99999999999999998742 222222 3333322    367899999999996543

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK15494 era GTPase Era; Provisional

Probab=99.85  E-value=1.4e-20  Score=139.04  Aligned_cols=116  Identities=18%  Similarity=0.311  Sum_probs=78.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccee--eeEEEEEEECCeEEEEEEEeCCCccc-cccc-------ccc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGV--DFKIKHVALGGKKMKLAIWDTAGQER-FRTL-------TSS   80 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~-------~~~   80 (154)
                      .+..+|+++|.+|+|||||+|+|++..+....+..+.  ......+..++  ..+.+|||||... +..+       ...
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            4567999999999999999999999887443333332  23333444444  4679999999743 2221       112


Q ss_pred             cccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        81 ~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      .++.+|++++|+|..+  ++......|.+.+...    +.|.++|+||+|+.+.
T Consensus       128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~----~~p~IlViNKiDl~~~  175 (339)
T PRK15494        128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL----NIVPIFLLNKIDIESK  175 (339)
T ss_pred             HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc----CCCEEEEEEhhcCccc
Confidence            3678999999999765  4444444355555443    4577899999999754

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.85  E-value=3.3e-20  Score=136.58  Aligned_cols=123  Identities=19%  Similarity=0.156  Sum_probs=89.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-------ccccccccccCc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-------FRTLTSSYYRGA   85 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~   85 (154)
                      -.|+++|.|+||||||++++.+.+. ...++.++.......+.+. ....+.+||+||..+       +...+..+++++
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            3588999999999999999998765 3344555555555555543 234688999999532       222334456789


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhcC-CCCCcEEEEEeCCCCCCchhhh
Q 031704           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKVCPWRLF  138 (154)
Q Consensus        86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~Dl~~~~~~~  138 (154)
                      +++++|+|+++.++++.+.. |.+.+..+.. ..+.|+++|+||+|+.++..+.
T Consensus       238 ~vlI~ViD~s~~~s~e~~~~-~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~  290 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDYKT-IRNELEKYSPELADKPRILVLNKIDLLDEEEER  290 (335)
T ss_pred             CEEEEEEcCCCCCCHHHHHH-HHHHHHHhhhhcccCCeEEEEECcccCCchhHH
Confidence            99999999998888888877 8888876522 2468999999999997665443

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.84  E-value=2.9e-20  Score=137.79  Aligned_cols=122  Identities=24%  Similarity=0.234  Sum_probs=88.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc---------ccccccccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE---------RFRTLTSSY   81 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~   81 (154)
                      ..++|+++|.+|+|||||+|+|.+... ....+.++.+.....+.+.+. ..+.+|||+|..         .+.... ..
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~  265 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EE  265 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence            448999999999999999999999875 333344444555566666432 378899999962         222222 24


Q ss_pred             ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      ++++|++++|+|++++.+.+.... |...+... ...+.|+++|+||+|+.+...+
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~~~-~~~~L~~l-~~~~~piIlV~NK~Dl~~~~~v  319 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQIEA-VEKVLEEL-GAEDIPQLLVYNKIDLLDEPRI  319 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHHHH-HHHHHHHh-ccCCCCEEEEEEeecCCChHhH
Confidence            778999999999999888777655 66666654 3456899999999999765433

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd04171 SelB SelB subfamily

Probab=99.84  E-value=4.6e-20  Score=122.89  Aligned_cols=115  Identities=20%  Similarity=0.163  Sum_probs=76.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC---C-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF---E-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      .|+++|.+++|||||+++|.+...   . ...+..+.+.....+.+.+ ...+.+|||||++.+......+++.+|++++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            689999999999999999997432   1 2223333333333444432 3578999999999887766777889999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      |+|+++... ..... +...+...   ...|+++|+||+|+..+.
T Consensus        81 V~d~~~~~~-~~~~~-~~~~~~~~---~~~~~ilv~NK~Dl~~~~  120 (164)
T cd04171          81 VVAADEGIM-PQTRE-HLEILELL---GIKRGLVVLTKADLVDED  120 (164)
T ss_pred             EEECCCCcc-HhHHH-HHHHHHHh---CCCcEEEEEECccccCHH
Confidence            999987221 11111 11122221   124899999999997653

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.84  E-value=5e-21  Score=142.33  Aligned_cols=132  Identities=23%  Similarity=0.183  Sum_probs=96.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEE--EEEEECCeEEEEEEEeCCCcccc---------cccccccc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKI--KHVALGGKKMKLAIWDTAGQERF---------RTLTSSYY   82 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~   82 (154)
                      ..|+++|.||+|||||+|||.+++.+-...+.|.|-..  ....+.+.  .+.++||+|-+..         .+.....+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            57999999999999999999999985555555544333  33344443  4888999995532         23345567


Q ss_pred             cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhhhhccccccC
Q 031704           83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLSKFYCSS  154 (154)
Q Consensus        83 ~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~S  154 (154)
                      .++|++++|+|....-+-++.  ...+.++.    .++|+++|+||+|-. ..+....++|++|+++++|||
T Consensus        82 ~eADvilfvVD~~~Git~~D~--~ia~~Lr~----~~kpviLvvNK~D~~-~~e~~~~efyslG~g~~~~IS  146 (444)
T COG1160          82 EEADVILFVVDGREGITPADE--EIAKILRR----SKKPVILVVNKIDNL-KAEELAYEFYSLGFGEPVPIS  146 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHH--HHHHHHHh----cCCCEEEEEEcccCc-hhhhhHHHHHhcCCCCceEee
Confidence            889999999998875443221  12334442    468999999999998 556677899999999999998

>TIGR00436 era GTP-binding protein Era

Probab=99.84  E-value=3.2e-20  Score=133.57  Aligned_cols=114  Identities=20%  Similarity=0.209  Sum_probs=76.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEE-EEEEECCeEEEEEEEeCCCcccccc--------cccccccCc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKI-KHVALGGKKMKLAIWDTAGQERFRT--------LTSSYYRGA   85 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~   85 (154)
                      +|+++|.+|+|||||+|+|++.+....++..+.|... ..+...+ ...+.+|||||......        ....+++.+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a   80 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV   80 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence            6899999999999999999998864333322222211 1122222 24689999999653211        123457889


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      |++++|+|+++..+.+   ..+.+.+..    .+.|+++|+||+|+.....
T Consensus        81 Dvvl~VvD~~~~~~~~---~~i~~~l~~----~~~p~ilV~NK~Dl~~~~~  124 (270)
T TIGR00436        81 DLILFVVDSDQWNGDG---EFVLTKLQN----LKRPVVLTRNKLDNKFKDK  124 (270)
T ss_pred             CEEEEEEECCCCCchH---HHHHHHHHh----cCCCEEEEEECeeCCCHHH
Confidence            9999999999876654   224444443    3689999999999975443

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.84  E-value=1e-19  Score=118.69  Aligned_cols=119  Identities=47%  Similarity=0.765  Sum_probs=92.7

Q ss_pred             EEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCC
Q 031704           18 LIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR   96 (154)
Q Consensus        18 v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~   96 (154)
                      ++|++|+|||||++++.+... ......+..+..............+.+||+||...+.......++.+|++++|+|+++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   80 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD   80 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence            589999999999999998877 3333333366666666666778899999999988887777788899999999999999


Q ss_pred             cchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           97 RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        97 ~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      +.++..... |.............|+++++||+|+......
T Consensus        81 ~~~~~~~~~-~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~  120 (157)
T cd00882          81 RESFENVKE-WLLLILINKEGENIPIILVGNKIDLPEERVV  120 (157)
T ss_pred             HHHHHHHHH-HHHHHHHhhccCCCcEEEEEeccccccccch
Confidence            998888877 4222222225668899999999999765543

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.83  E-value=6.3e-20  Score=139.52  Aligned_cols=114  Identities=24%  Similarity=0.251  Sum_probs=83.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TSSY   81 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   81 (154)
                      ..+||+++|++|+|||||+|+|++...  ....+.++.+.....+.+++  ..+.+|||||.......        ...+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            458999999999999999999998764  33344444445455556655  45689999997554322        2356


Q ss_pred             ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      ++++|++++|+|++++.+++..   |...+.    ..+.|+++|+||+|+...
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~~----~~~~piIlV~NK~Dl~~~  325 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF---LIIDLN----KSKKPFILVLNKIDLKIN  325 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH---HHHHHh----hCCCCEEEEEECccCCCc
Confidence            7899999999999998876654   444443    236799999999999654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01894 EngA1 EngA1 subfamily

Probab=99.83  E-value=2.8e-20  Score=123.00  Aligned_cols=129  Identities=25%  Similarity=0.202  Sum_probs=84.1

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccCcc
Q 031704           17 LLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT--------LTSSYYRGAQ   86 (154)
Q Consensus        17 ~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~~   86 (154)
                      +++|.+|+|||||++++.+...  ....+..+..........++  ..+.+|||||...+..        .....++++|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            4789999999999999998764  22233332233333333333  5788999999877543        3345578899


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhhhhccccccC
Q 031704           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLSKFYCSS  154 (154)
Q Consensus        87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~S  154 (154)
                      ++++|+|..+..+.... . +.+.++.    .+.|+++|+||+|+..+... ...++.++...++++|
T Consensus        79 ~ii~v~d~~~~~~~~~~-~-~~~~~~~----~~~piiiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~S  139 (157)
T cd01894          79 VILFVVDGREGLTPADE-E-IAKYLRK----SKKPVILVVNKVDNIKEEDE-AAEFYSLGFGEPIPIS  139 (157)
T ss_pred             EEEEEEeccccCCccHH-H-HHHHHHh----cCCCEEEEEECcccCChHHH-HHHHHhcCCCCeEEEe
Confidence            99999999875544332 1 2233333    25899999999999876554 3444445544555554

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.83  E-value=7.5e-20  Score=120.87  Aligned_cols=113  Identities=21%  Similarity=0.215  Sum_probs=80.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------cccccc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TSSYYR   83 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~   83 (154)
                      ++|+++|++|+|||||++++.+....  ...+..+.......+...  ...+.+|||||...+...        ....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            58999999999999999999988752  223333333333334433  357889999997654332        224567


Q ss_pred             CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      ++|++++|+|++++.+...... |..       ....|+++|+||+|+.++..
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~-~~~-------~~~~~vi~v~nK~D~~~~~~  124 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEI-LEL-------PADKPIIVVLNKSDLLPDSE  124 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHH-HHh-------hcCCCEEEEEEchhcCCccc
Confidence            8999999999998777666544 222       34689999999999976554

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.83  E-value=1.4e-19  Score=122.80  Aligned_cols=120  Identities=22%  Similarity=0.255  Sum_probs=82.9

Q ss_pred             cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc----------ccc
Q 031704            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE----------RFR   75 (154)
Q Consensus         7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~   75 (154)
                      +.+....++|+++|.+|+|||||+|++.+..+ ....++.+.+.....+..++   .+.+|||||..          .+.
T Consensus        12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~   88 (179)
T TIGR03598        12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQ   88 (179)
T ss_pred             hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHH
Confidence            44557789999999999999999999999864 44555655555555454443   58899999943          222


Q ss_pred             cccccccc---CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           76 TLTSSYYR---GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        76 ~~~~~~~~---~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      .....+++   .++++++|+|++++.+.... . +...+..    .+.|+++++||+|+..+.
T Consensus        89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~-~~~~~~~----~~~pviiv~nK~D~~~~~  145 (179)
T TIGR03598        89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDL-E-MLEWLRE----RGIPVLIVLTKADKLKKS  145 (179)
T ss_pred             HHHHHHHHhChhhcEEEEEecCCCCCCHHHH-H-HHHHHHH----cCCCEEEEEECcccCCHH
Confidence            33334444   35899999999876554443 2 2233332    368999999999997553

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.83  E-value=1.9e-19  Score=115.70  Aligned_cols=128  Identities=24%  Similarity=0.370  Sum_probs=102.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc-cccccccccCccE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF---EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF-RTLTSSYYRGAQG   87 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~~   87 (154)
                      +.-|++++|..++|||+++.+++.+..   .+..|+....+....-+-.+..-.+.++||.|-... .++...++.-+|+
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            447999999999999999999987776   455666665554443333455567899999997776 5666778888999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhh
Q 031704           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLS  140 (154)
Q Consensus        88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~  140 (154)
                      +++|||..+++||+.+.. +...+.+...+...|+++++||+|+..++++..+
T Consensus        88 fVLVYs~~d~eSf~rv~l-lKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d  139 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRVEL-LKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMD  139 (198)
T ss_pred             EEEEecCCCHHHHHHHHH-HHHHHhhccccccccEEEEechhhcccchhcCHH
Confidence            999999999999998877 7778887767788999999999999877776443

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.83  E-value=1.2e-20  Score=120.39  Aligned_cols=118  Identities=26%  Similarity=0.449  Sum_probs=100.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      ..+.+.++|..++|||||+|.+..+.+ ....|+.|...    ..+....+.+.+||.+|+..++.+|..+.+.++++++
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm----rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY   94 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY   94 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhccccccee----EEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence            357899999999999999999999888 67788888433    2344456789999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      |.|+++++.++..+..+...+.+. .-..+|+.++|||.|+.++
T Consensus        95 ~VDaad~~k~~~sr~EL~~LL~k~-~l~gip~LVLGnK~d~~~A  137 (186)
T KOG0075|consen   95 VVDAADPDKLEASRSELHDLLDKP-SLTGIPLLVLGNKIDLPGA  137 (186)
T ss_pred             EeecCCcccchhhHHHHHHHhcch-hhcCCcEEEecccccCccc
Confidence            999999999998888677777654 5678999999999999654

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.82  E-value=1.6e-19  Score=120.89  Aligned_cols=114  Identities=18%  Similarity=0.128  Sum_probs=80.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC-CCcceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      .|+++|.+|+|||||+++|...++... .+..+.+.....+... +....+.+|||||++.+...+..+++.+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            589999999999999999998887332 2222222222233322 23568899999999988888888889999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      |+++....+....  ...+..    .+.|+++|+||+|+...
T Consensus        82 d~~~~~~~~~~~~--~~~~~~----~~~p~ivv~NK~Dl~~~  117 (168)
T cd01887          82 AADDGVMPQTIEA--IKLAKA----ANVPFIVALNKIDKPNA  117 (168)
T ss_pred             ECCCCccHHHHHH--HHHHHH----cCCCEEEEEEceecccc
Confidence            9987543222211  122222    46789999999999754

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PTZ00099 rab6; Provisional

Probab=99.82  E-value=2.2e-19  Score=121.58  Aligned_cols=103  Identities=39%  Similarity=0.606  Sum_probs=87.8

Q ss_pred             CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCC
Q 031704           39 EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ  118 (154)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  118 (154)
                      ..+.++.+.++....+.+++..+.+.||||+|++.+...+..+++.+|++++|||++++.+|+.+.. |+..+... ...
T Consensus         7 ~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~-w~~~i~~~-~~~   84 (176)
T PTZ00099          7 NNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTK-WIQDILNE-RGK   84 (176)
T ss_pred             CCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHH-HHHHHHHh-cCC
Confidence            4567888888888888899999999999999999999999999999999999999999999999987 88877665 335


Q ss_pred             CCcEEEEEeCCCCCCchhhhhhhhh
Q 031704          119 DCIKLLVGNKVDKVCPWRLFLSGFW  143 (154)
Q Consensus       119 ~~~~ivv~nK~Dl~~~~~~~~~~~~  143 (154)
                      +.|++||+||+||...+.+..++..
T Consensus        85 ~~piilVgNK~DL~~~~~v~~~e~~  109 (176)
T PTZ00099         85 DVIIALVGNKTDLGDLRKVTYEEGM  109 (176)
T ss_pred             CCeEEEEEECcccccccCCCHHHHH
Confidence            6899999999999765555544443

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.82  E-value=3.8e-20  Score=121.98  Aligned_cols=131  Identities=21%  Similarity=0.179  Sum_probs=84.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--cC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT------LTSSYY--RG   84 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~   84 (154)
                      ++|+++|.||+|||||+|+|++.+. ...+|..+.+.....+..++  ..+.++|+||......      ....++  .+
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            5899999999999999999999986 34445555556556666666  4677889999433222      223333  57


Q ss_pred             ccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh--hhhhhhhhhhccccccC
Q 031704           85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL--FLSGFWHFLLSKFYCSS  154 (154)
Q Consensus        85 ~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~S  154 (154)
                      .|++++|.|+++.+.-.   . +..++...    ++|+++++||+|+..+...  ..+.+.+.....++|+|
T Consensus        79 ~D~ii~VvDa~~l~r~l---~-l~~ql~e~----g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~s  142 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNL---Y-LTLQLLEL----GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVS  142 (156)
T ss_dssp             SSEEEEEEEGGGHHHHH---H-HHHHHHHT----TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEB
T ss_pred             CCEEEEECCCCCHHHHH---H-HHHHHHHc----CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEE
Confidence            89999999998754322   2 33344443    7999999999999755543  44555555444556654

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.82  E-value=4.2e-20  Score=140.98  Aligned_cols=132  Identities=25%  Similarity=0.192  Sum_probs=90.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc--------cccccccccc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER--------FRTLTSSYYR   83 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~   83 (154)
                      ++|+++|.+|+|||||+|+|.+.+..  ...+..+.+........++  ..+.+|||||.+.        +......+++
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            58999999999999999999988753  2233333333444455554  6789999999876        2233445678


Q ss_pred             CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhhhhccccccC
Q 031704           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLSKFYCSS  154 (154)
Q Consensus        84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~S  154 (154)
                      ++|++++|+|+.+..+.... . ....++.    .+.|+++|+||+|+.+. .....+++.+++.+++++|
T Consensus        80 ~ad~il~vvd~~~~~~~~~~-~-~~~~l~~----~~~piilv~NK~D~~~~-~~~~~~~~~lg~~~~~~iS  143 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADE-E-IAKILRK----SNKPVILVVNKVDGPDE-EADAYEFYSLGLGEPYPIS  143 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHH-H-HHHHHHH----cCCcEEEEEECccCccc-hhhHHHHHhcCCCCCEEEE
Confidence            99999999999875443321 1 2223333    26899999999997642 3444666777777777776

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.82  E-value=8.5e-20  Score=139.05  Aligned_cols=131  Identities=26%  Similarity=0.249  Sum_probs=91.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceee--eEEEEEEECCeEEEEEEEeCCCcc--------cccccccccccC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVD--FKIKHVALGGKKMKLAIWDTAGQE--------RFRTLTSSYYRG   84 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~   84 (154)
                      +|+++|.+|+|||||+|++.+.+........+.+  ........++.  .+.+|||||..        .+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            5899999999999999999988753333333333  33334444443  58899999963        334445566889


Q ss_pred             ccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhhhhccccccC
Q 031704           85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLSKFYCSS  154 (154)
Q Consensus        85 ~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~S  154 (154)
                      +|++++|+|+.+..+.... . +...++.    .+.|+++|+||+|+..... ...+++++++.+++++|
T Consensus        79 ad~vl~vvD~~~~~~~~d~-~-i~~~l~~----~~~piilVvNK~D~~~~~~-~~~~~~~lg~~~~~~vS  141 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDE-E-IAKWLRK----SGKPVILVANKIDGKKEDA-VAAEFYSLGFGEPIPIS  141 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHH-H-HHHHHHH----hCCCEEEEEECccCCcccc-cHHHHHhcCCCCeEEEe
Confidence            9999999999875444331 1 3334443    3678999999999975543 34567788888888876

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.82  E-value=3e-19  Score=131.33  Aligned_cols=121  Identities=17%  Similarity=0.149  Sum_probs=86.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-------ccccccccccCc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-------FRTLTSSYYRGA   85 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~   85 (154)
                      -.|+++|.++||||||++++.+.+. ...++.++.......+.+++ ...+.+||+||..+       ....+..++.++
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            4689999999999999999998765 33344444445555555543 35789999999642       112233345679


Q ss_pred             cEEEEEEECCCc---chHHHHHHHHHHHHhhhcC-CCCCcEEEEEeCCCCCCchh
Q 031704           86 QGIIMVYDVTRR---DTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        86 ~~~v~v~d~~~~---~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      +++++|+|+++.   +.++.+.. |.+++..+.. ..+.|+++|+||+|+..+..
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~~-l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~  290 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYEI-IRNELKKYSPELAEKPRIVVLNKIDLLDEEE  290 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHHH-HHHHHHHhhhhhccCCEEEEEeCccCCChHH
Confidence            999999999986   56777766 7777765522 24689999999999976543

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.82  E-value=9.5e-20  Score=122.75  Aligned_cols=119  Identities=25%  Similarity=0.246  Sum_probs=78.7

Q ss_pred             EEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----ccccc---cccccCccEEE
Q 031704           18 LIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----FRTLT---SSYYRGAQGII   89 (154)
Q Consensus        18 v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~---~~~~~~~~~~v   89 (154)
                      ++|++|+|||||++++.+... ....+..+.+.....+..+ ....+.+|||||...    .+...   ...++.+|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            589999999999999999875 1222222222222333333 145688999999632    22222   23467899999


Q ss_pred             EEEECCCc------chHHHHHHHHHHHHhhhcCC------CCCcEEEEEeCCCCCCchhhh
Q 031704           90 MVYDVTRR------DTFTNLADIWAKEIDLYSTN------QDCIKLLVGNKVDKVCPWRLF  138 (154)
Q Consensus        90 ~v~d~~~~------~s~~~~~~~~~~~~~~~~~~------~~~~~ivv~nK~Dl~~~~~~~  138 (154)
                      +|+|+++.      .+++.... |...+......      .+.|+++|+||+|+.......
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~  139 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEI-LNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELE  139 (176)
T ss_pred             EEEeccCCccccccCHHHHHHH-HHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHH
Confidence            99999987      46666655 65555543221      478999999999997665543

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.81  E-value=3e-19  Score=118.32  Aligned_cols=109  Identities=21%  Similarity=0.231  Sum_probs=77.5

Q ss_pred             EEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc------ccccc--cCccEE
Q 031704           18 LIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL------TSSYY--RGAQGI   88 (154)
Q Consensus        18 v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~~~~   88 (154)
                      ++|.+|+|||||++++.+..+ ....+..+.+.....+..++  ..+.+|||||...+...      ...++  ..+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            579999999999999998865 33445555555555566654  47899999998766542      34445  489999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      ++|+|+.+.....   . |...+..    .+.|+++|+||+|+.+...
T Consensus        79 i~v~d~~~~~~~~---~-~~~~~~~----~~~~~iiv~NK~Dl~~~~~  118 (158)
T cd01879          79 VNVVDATNLERNL---Y-LTLQLLE----LGLPVVVALNMIDEAEKRG  118 (158)
T ss_pred             EEEeeCCcchhHH---H-HHHHHHH----cCCCEEEEEehhhhccccc
Confidence            9999998765432   2 3333333    3689999999999976543

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.81  E-value=2.1e-19  Score=114.14  Aligned_cols=126  Identities=26%  Similarity=0.431  Sum_probs=107.1

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      ...+.+||.++|-.++|||||+..|.+.+.....|+.|.+.  ..+..+ ..+++++||..|+...+..|..|+.+.|++
T Consensus        13 ~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~--k~v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~l   89 (185)
T KOG0074|consen   13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNT--KKVEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDGL   89 (185)
T ss_pred             CCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcce--EEEeec-CcEEEEEEecCCccccchhhhhhhhccceE
Confidence            34678999999999999999999999988888888888544  444444 357999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhh
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLF  138 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~  138 (154)
                      ++|+|.++...|+++.+.+.+.+... +....|+.+.+||.|+..+.+++
T Consensus        90 IyVIDS~D~krfeE~~~el~ELleee-Kl~~vpvlIfankQdlltaa~~e  138 (185)
T KOG0074|consen   90 IYVIDSTDEKRFEEISEELVELLEEE-KLAEVPVLIFANKQDLLTAAKVE  138 (185)
T ss_pred             EEEEeCCchHhHHHHHHHHHHHhhhh-hhhccceeehhhhhHHHhhcchH
Confidence            99999999999999988777777665 55678999999999997666553

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.81  E-value=7.2e-20  Score=119.66  Aligned_cols=96  Identities=21%  Similarity=0.240  Sum_probs=68.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc-----cccccccccccCccEEE
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE-----RFRTLTSSYYRGAQGII   89 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~~~~v   89 (154)
                      ||+++|++|+|||||++++.++.+ .+.++.+.+       +..     .+|||||..     .++.+.. .++++|+++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~-~~~~t~~~~-------~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi   67 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEI-LYKKTQAVE-------YND-----GAIDTPGEYVENRRLYSALIV-TAADADVIA   67 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCcc-ccccceeEE-------EcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence            899999999999999999998765 222332211       111     579999972     3343333 478999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      +|+|++++.++... . |...+       ..|+++|+||+|+.+
T Consensus        68 lv~d~~~~~s~~~~-~-~~~~~-------~~p~ilv~NK~Dl~~  102 (142)
T TIGR02528        68 LVQSATDPESRFPP-G-FASIF-------VKPVIGLVTKIDLAE  102 (142)
T ss_pred             EEecCCCCCcCCCh-h-HHHhc-------cCCeEEEEEeeccCC
Confidence            99999999887542 2 43321       238999999999964

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PRK04213 GTP-binding protein; Provisional

Probab=99.81  E-value=9.4e-20  Score=125.72  Aligned_cols=114  Identities=23%  Similarity=0.275  Sum_probs=73.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCC-----------ccccccccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAG-----------QERFRTLTS   79 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~   79 (154)
                      ..++|+++|.+|+|||||+|++.+..+. ...+  +.+.....+...    .+.+|||||           ++.++..+.
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV   81 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence            3479999999999999999999988763 2233  334443343333    588999999           345555444


Q ss_pred             cccc----CccEEEEEEECCCcchHHH---------HHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           80 SYYR----GAQGIIMVYDVTRRDTFTN---------LADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        80 ~~~~----~~~~~v~v~d~~~~~s~~~---------~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      .+++    .++++++|+|.++...+..         ....+...+    ...+.|+++|+||+|+..++
T Consensus        82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~p~iiv~NK~Dl~~~~  146 (201)
T PRK04213         82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFL----RELGIPPIVAVNKMDKIKNR  146 (201)
T ss_pred             HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHH----HHcCCCeEEEEECccccCcH
Confidence            4443    4578888888765322100         001012222    22478999999999997554

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.80  E-value=2.2e-19  Score=137.12  Aligned_cols=115  Identities=23%  Similarity=0.199  Sum_probs=83.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TSSY   81 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   81 (154)
                      ..++|+++|.+|+|||||+|++++.+.  ....+.++.+.....+..++  ..+.+|||||.......        ...+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            348999999999999999999998775  33344444444445555554  46789999997654332        2235


Q ss_pred             ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      ++++|++++|+|++++.+++.... |..       ..+.|+++|+||+|+.....
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~-l~~-------~~~~piiiV~NK~DL~~~~~  338 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEI-LEE-------LKDKPVIVVLNKADLTGEID  338 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHH-HHh-------cCCCCcEEEEEhhhccccch
Confidence            788999999999999887765433 433       34679999999999975543

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.80  E-value=3.8e-19  Score=142.48  Aligned_cols=136  Identities=20%  Similarity=0.149  Sum_probs=93.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc--------cccccccccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER--------FRTLTSSYYR   83 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~   83 (154)
                      ...+|+++|.+++|||||+|++++.+.....+..|.+.........-....+.+|||||.+.        +......+++
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~  353 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS  353 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence            45789999999999999999999887644444445444433332221234688999999653        2333445678


Q ss_pred             CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhhhhccccccC
Q 031704           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLSKFYCSS  154 (154)
Q Consensus        84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~S  154 (154)
                      .+|++++|+|+++.-.  .....|...++.    .+.|+++|+||+|+.... ....+++.+++..++++|
T Consensus       354 ~aD~iL~VvDa~~~~~--~~d~~i~~~Lr~----~~~pvIlV~NK~D~~~~~-~~~~~~~~lg~~~~~~iS  417 (712)
T PRK09518        354 LADAVVFVVDGQVGLT--STDERIVRMLRR----AGKPVVLAVNKIDDQASE-YDAAEFWKLGLGEPYPIS  417 (712)
T ss_pred             hCCEEEEEEECCCCCC--HHHHHHHHHHHh----cCCCEEEEEECcccccch-hhHHHHHHcCCCCeEEEE
Confidence            9999999999986432  222225555543    478999999999996542 234566677777788876

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.80  E-value=8.5e-19  Score=137.57  Aligned_cols=116  Identities=24%  Similarity=0.287  Sum_probs=88.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCC-------C-CCCC------CcceeeeEEEEEEE-----CCeEEEEEEEeCCCccc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDT-------F-EELS------PTIGVDFKIKHVAL-----GGKKMKLAIWDTAGQER   73 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~-------~-~~~~------~~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~~~   73 (154)
                      ..+|+++|+.++|||||+++|+...       + ..+.      ...|++.......+     ++..+.+++|||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            5699999999999999999998642       1 1111      22355555443332     56678999999999999


Q ss_pred             ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        74 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      |...+..+++.+|++++|+|+++..+.+.... |...+.     .+.|+++|+||+|+.+.
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~-~~~~~~-----~~ipiIiViNKiDl~~~  137 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLAN-VYLALE-----NDLEIIPVINKIDLPSA  137 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHH-HHHHHH-----cCCCEEEEEECcCCCcc
Confidence            99889999999999999999998776666555 443332     35789999999999654

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK11058 GTPase HflX; Provisional

Probab=99.80  E-value=1.4e-18  Score=131.62  Aligned_cols=119  Identities=22%  Similarity=0.210  Sum_probs=84.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc--ccc------cccccc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF--RTL------TSSYYR   83 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~------~~~~~~   83 (154)
                      .++|+++|.+|+|||||+|+|.+.+. ....+..+.+.....+.+.+. ..+.+|||+|....  ...      ....++
T Consensus       197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            36899999999999999999998775 333444444455555555442 25679999997321  111      122357


Q ss_pred             CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      .+|++++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+...
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l~~-v~~iL~el-~~~~~pvIiV~NKiDL~~~  324 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENIEA-VNTVLEEI-DAHEIPTLLVMNKIDMLDD  324 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHHHH-HHHHHHHh-ccCCCCEEEEEEcccCCCc
Confidence            8999999999999888777655 55555544 3457899999999999753

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.79  E-value=2.3e-18  Score=129.96  Aligned_cols=118  Identities=21%  Similarity=0.173  Sum_probs=83.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----cccc---ccccccCcc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----FRTL---TSSYYRGAQ   86 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~~~~~~~   86 (154)
                      .|+++|.++||||||++++.+.+. ...+|.++.+.....+.+++ ...+.+||+||...    ...+   ...++.+++
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~  238 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR  238 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence            899999999999999999998775 33345554444444444431 34689999999532    1122   233456799


Q ss_pred             EEEEEEECCCc---chHHHHHHHHHHHHhhhcC-CCCCcEEEEEeCCCCCCc
Q 031704           87 GIIMVYDVTRR---DTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        87 ~~v~v~d~~~~---~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~Dl~~~  134 (154)
                      ++++|+|+++.   +.++.... |.+.+..+.. ....|++||+||+|+...
T Consensus       239 llI~VID~s~~~~~dp~e~~~~-i~~EL~~y~~~L~~kP~IVV~NK~DL~~~  289 (424)
T PRK12297        239 VIVHVIDMSGSEGRDPIEDYEK-INKELKLYNPRLLERPQIVVANKMDLPEA  289 (424)
T ss_pred             EEEEEEeCCccccCChHHHHHH-HHHHHhhhchhccCCcEEEEEeCCCCcCC
Confidence            99999999864   56666655 7777776532 246899999999998543

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.79  E-value=1.1e-18  Score=123.15  Aligned_cols=132  Identities=14%  Similarity=0.096  Sum_probs=89.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC--------------CC---CCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFE--------------EL---SPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL   77 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~--------------~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   77 (154)
                      +|+++|+.++|||||+++++...-.              +.   ....+.+.......+.....++++|||||+.++...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            5899999999999999999864210              00   112233444444444445678999999999998888


Q ss_pred             ccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch-hhhhhhhhhhhhccccc
Q 031704           78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW-RLFLSGFWHFLLSKFYC  152 (154)
Q Consensus        78 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~  152 (154)
                      +..+++.+|++++|+|+++.... .... +...+..    .+.|+++++||+|+.... ....+++.......++|
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~-~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~  150 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRI-LWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVP  150 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHH-HHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEE
Confidence            88899999999999999986543 2233 3344433    367999999999997543 22334444433333333

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK00089 era GTPase Era; Reviewed

Probab=99.79  E-value=1.5e-18  Score=126.23  Aligned_cols=117  Identities=19%  Similarity=0.183  Sum_probs=75.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc--------cccccccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR--------TLTSSYYR   83 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~   83 (154)
                      +.-.|+++|.+|+|||||+|++++.+.....+....+..............+.++||||.....        ......+.
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~   83 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK   83 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence            3457999999999999999999998874333332222221111111223688999999964422        22334567


Q ss_pred             CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      .+|++++|+|+++..+  .....+.+.+.    ..+.|+++|+||+|+...
T Consensus        84 ~~D~il~vvd~~~~~~--~~~~~i~~~l~----~~~~pvilVlNKiDl~~~  128 (292)
T PRK00089         84 DVDLVLFVVDADEKIG--PGDEFILEKLK----KVKTPVILVLNKIDLVKD  128 (292)
T ss_pred             cCCEEEEEEeCCCCCC--hhHHHHHHHHh----hcCCCEEEEEECCcCCCC
Confidence            8999999999988322  11221223333    236799999999999843

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.79  E-value=8.6e-19  Score=134.84  Aligned_cols=115  Identities=23%  Similarity=0.199  Sum_probs=82.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc----------cccccc-
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE----------RFRTLT-   78 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~-   78 (154)
                      ..+||+++|.+++|||||+|+|++...  ....+.++.+.....+..++..  +.+|||||..          .+.... 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence            468999999999999999999999875  2334444444444556666654  5789999952          222221 


Q ss_pred             cccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        79 ~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      ..+++.+|++++|+|+++..++.....  ...+.    ..+.|+++|+||+|+..+
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~~--~~~~~----~~~~piIiV~NK~Dl~~~  337 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQRV--LSMVI----EAGRALVLAFNKWDLVDE  337 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHHH--HHHHH----HcCCCEEEEEECcccCCh
Confidence            235789999999999999888776532  33332    246899999999999753

>COG1159 Era GTPase [General function prediction only]

Probab=99.78  E-value=2e-18  Score=122.52  Aligned_cols=137  Identities=21%  Similarity=0.195  Sum_probs=92.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc--------cccccccccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER--------FRTLTSSYYR   83 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~   83 (154)
                      +.--++++|.|++|||||+|++++.+..-.++-...|-.....-+.....++.|+||||-..        +.......+.
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~   84 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK   84 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence            44679999999999999999999999855444443333333333334466889999999433        2233444577


Q ss_pred             CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh--hhhhhh--hhhhccccccC
Q 031704           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL--FLSGFW--HFLLSKFYCSS  154 (154)
Q Consensus        84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~--~~~~~~--~~~~~~~~~~S  154 (154)
                      .+|++++|.|++....-  -..+..+.++.    .+.|++++.||+|...+...  ...+.+  .+.+.+++|+|
T Consensus        85 dvDlilfvvd~~~~~~~--~d~~il~~lk~----~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiS  153 (298)
T COG1159          85 DVDLILFVVDADEGWGP--GDEFILEQLKK----TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPIS  153 (298)
T ss_pred             cCcEEEEEEeccccCCc--cHHHHHHHHhh----cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEee
Confidence            89999999999873322  22223344443    46799999999999877763  222222  35666788887

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.78  E-value=2.8e-18  Score=131.18  Aligned_cols=121  Identities=17%  Similarity=0.176  Sum_probs=83.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----cc---ccccccccC
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----FR---TLTSSYYRG   84 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~---~~~~~~~~~   84 (154)
                      .-.|+++|.||||||||+|+|.+.+. ...+|.++.......+...+  ..+.+||+||...    ..   .....++.+
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            35789999999999999999998765 33445555555555555544  4789999999531    11   123345678


Q ss_pred             ccEEEEEEECCCc----chHHHHHHHHHHHHhhhc----------CCCCCcEEEEEeCCCCCCchh
Q 031704           85 AQGIIMVYDVTRR----DTFTNLADIWAKEIDLYS----------TNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        85 ~~~~v~v~d~~~~----~s~~~~~~~~~~~~~~~~----------~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      +|++++|+|+++.    +.++.+.. |...+..+.          .....|++||+||+|+.+...
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~~~-i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e  301 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDIDA-LEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE  301 (500)
T ss_pred             cCEEEEEECCcccccccCchhhHHH-HHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH
Confidence            9999999999853    34444444 555555442          124689999999999976544

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.78  E-value=1.5e-18  Score=111.83  Aligned_cols=122  Identities=28%  Similarity=0.572  Sum_probs=110.7

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   86 (154)
                      ..+.-.+||.++|.+..|||||+-.+.++.+ ..+..+.|.++.-+.+.+.+..+.+.+||..|++++..+.+....++-
T Consensus        15 ~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsv   94 (205)
T KOG1673|consen   15 VSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSV   94 (205)
T ss_pred             cccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcE
Confidence            3455679999999999999999999999988 677788999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                      +++++||++++.++..+.+ |+++.+.. .+..+| |+||+|.|+.
T Consensus        95 aIlFmFDLt~r~TLnSi~~-WY~QAr~~-NktAiP-ilvGTKyD~f  137 (205)
T KOG1673|consen   95 AILFMFDLTRRSTLNSIKE-WYRQARGL-NKTAIP-ILVGTKYDLF  137 (205)
T ss_pred             EEEEEEecCchHHHHHHHH-HHHHHhcc-CCccce-EEeccchHhh
Confidence            9999999999999999999 99998876 556667 6889999974

>cd01895 EngA2 EngA2 subfamily

Probab=99.78  E-value=2.9e-18  Score=114.91  Aligned_cols=115  Identities=26%  Similarity=0.184  Sum_probs=76.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc-----------ccc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT-----------LTS   79 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~   79 (154)
                      .++|+++|.+|+|||||++++++....  ...+..........+..++.  .+.+|||||......           ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence            479999999999999999999987642  22222222222233444443  477999999643311           112


Q ss_pred             ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        80 ~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ..++.+|++++|+|+.++.+.....  +...+.    ..+.|+++++||+|+.+..
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~----~~~~~~iiv~nK~Dl~~~~  129 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR--IAGLIL----EEGKALVIVVNKWDLVEKD  129 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH--HHHHHH----hcCCCEEEEEeccccCCcc
Confidence            3457899999999999887754432  222222    2357999999999997663

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.78  E-value=4.2e-18  Score=129.80  Aligned_cols=114  Identities=29%  Similarity=0.214  Sum_probs=79.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc-----------
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL-----------   77 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------   77 (154)
                      ...++++++|.+++|||||+|++++....  ...+.++.+.....+..++.  .+.+|||||.......           
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence            45689999999999999999999987752  22333333333334444443  6789999996543322           


Q ss_pred             ccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        78 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                      ...+++.+|++++|+|++++.+.....  +...+.    ..+.|+++|+||+|+.
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~--~~~~~~----~~~~~iiiv~NK~Dl~  296 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLR--IAGLIL----EAGKALVIVVNKWDLV  296 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHH--HHHHHH----HcCCcEEEEEECcccC
Confidence            123578899999999999877665542  222222    2368999999999997

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04163 Era Era subfamily

Probab=99.77  E-value=7.1e-18  Score=112.11  Aligned_cols=115  Identities=19%  Similarity=0.169  Sum_probs=75.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccC
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT--------LTSSYYRG   84 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~   84 (154)
                      ..+|+++|++|+|||||++++.+.+.....+....+............+.+.+|||||......        .....+..
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~   82 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD   82 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence            4789999999999999999999887632222222221112222233346788999999654322        23344778


Q ss_pred             ccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        85 ~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      +|++++|+|+++..+  .....+.+.+...    +.|+++|+||+|+..
T Consensus        83 ~d~i~~v~d~~~~~~--~~~~~~~~~~~~~----~~~~iiv~nK~Dl~~  125 (168)
T cd04163          83 VDLVLFVVDASEPIG--EGDEFILELLKKS----KTPVILVLNKIDLVK  125 (168)
T ss_pred             CCEEEEEEECCCccC--chHHHHHHHHHHh----CCCEEEEEEchhccc
Confidence            999999999998622  2222133344332    678999999999974

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.76  E-value=8.7e-18  Score=114.29  Aligned_cols=114  Identities=18%  Similarity=0.154  Sum_probs=80.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCc---------------ceeeeEEEEEEECCeEEEEEEEeCCCccccccccc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPT---------------IGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTS   79 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   79 (154)
                      +|+++|.+|+|||||+|++++.........               .+.+..............+.+|||||...+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            489999999999999999998876332211               11222222222222346789999999988888888


Q ss_pred             ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        80 ~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      .+++.+|++++|+|+.+..+.... . +...+.    ..+.|+++|+||+|+..+
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~~-~-~~~~~~----~~~~~i~iv~nK~D~~~~  129 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQTR-E-HLRIAR----EGGLPIIVAINKIDRVGE  129 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHHH-H-HHHHHH----HCCCCeEEEEECCCCcch
Confidence            888999999999999876543322 2 222332    247899999999999863

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.76  E-value=1.3e-17  Score=125.15  Aligned_cols=121  Identities=17%  Similarity=0.132  Sum_probs=84.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc-------cccccccccCcc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF-------RTLTSSYYRGAQ   86 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~~   86 (154)
                      .|+++|.||||||||+|++.+.+. ...+|.++.......+...+ ...+.++||||...-       ......++.++|
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad  239 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR  239 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence            789999999999999999998765 33345444444444554432 235889999996431       122334578899


Q ss_pred             EEEEEEECC---CcchHHHHHHHHHHHHhhhcC-CCCCcEEEEEeCCCCCCchhh
Q 031704           87 GIIMVYDVT---RRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        87 ~~v~v~d~~---~~~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      ++++|+|++   +.+.++.... |.+.+..+.. ....|+++|+||+|+..+..+
T Consensus       240 vlL~VVD~s~~~~~d~~e~~~~-l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el  293 (390)
T PRK12298        240 VLLHLIDIAPIDGSDPVENARI-IINELEKYSPKLAEKPRWLVFNKIDLLDEEEA  293 (390)
T ss_pred             EEEEEeccCcccccChHHHHHH-HHHHHHhhhhhhcCCCEEEEEeCCccCChHHH
Confidence            999999988   4456666655 7666665421 246799999999999765443

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.76  E-value=1.3e-17  Score=114.38  Aligned_cols=118  Identities=24%  Similarity=0.259  Sum_probs=78.9

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc----------ccccc
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE----------RFRTL   77 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~   77 (154)
                      ..+..++|+++|.+|+|||||++++.++++ ....++.+.+........   ...+.+|||||..          .+...
T Consensus        20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~   96 (196)
T PRK00454         20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL   96 (196)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence            445678999999999999999999999874 555556555544444333   2578999999942          23333


Q ss_pred             ccccccC---ccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           78 TSSYYRG---AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        78 ~~~~~~~---~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ...+++.   .+++++++|.+++.+.... . +...+.    ..+.|+++++||+|+....
T Consensus        97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~-i~~~l~----~~~~~~iiv~nK~Dl~~~~  151 (196)
T PRK00454         97 IEEYLRTRENLKGVVLLIDSRHPLKELDL-Q-MIEWLK----EYGIPVLIVLTKADKLKKG  151 (196)
T ss_pred             HHHHHHhCccceEEEEEEecCCCCCHHHH-H-HHHHHH----HcCCcEEEEEECcccCCHH
Confidence            3334443   4688888998775543321 1 122222    2367899999999997654

>cd04169 RF3 RF3 subfamily

Probab=99.75  E-value=1.2e-17  Score=119.88  Aligned_cols=116  Identities=16%  Similarity=0.110  Sum_probs=81.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC--C----------------CCC---CcceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF--E----------------ELS---PTIGVDFKIKHVALGGKKMKLAIWDTAGQE   72 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~--~----------------~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   72 (154)
                      .+|+++|++++|||||+++++...-  .                ++.   ...+.+.......+....+.+++|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            5899999999999999999985321  0                000   012334445555555567889999999999


Q ss_pred             cccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        73 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      +|.......++.+|++++|+|+++.... .... +.+...    ..+.|+++++||+|+....
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~-i~~~~~----~~~~P~iivvNK~D~~~a~  139 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRK-LFEVCR----LRGIPIITFINKLDREGRD  139 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHH-HHHHHH----hcCCCEEEEEECCccCCCC
Confidence            8887777778999999999999875432 2222 223322    2468999999999986554

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.75  E-value=2.9e-17  Score=128.61  Aligned_cols=117  Identities=16%  Similarity=0.170  Sum_probs=82.8

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      ..+.++|+++|+.++|||||++++.+.++.. ..+..+.+.....+..++. ..+.+|||||++.|..++...++.+|++
T Consensus        84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDia  162 (587)
T TIGR00487        84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIV  162 (587)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEE
Confidence            3466899999999999999999999887732 2222222232333334322 2789999999999999888889999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      ++|+|+++...-..... + ...    ...+.|+++++||+|+..
T Consensus       163 ILVVda~dgv~~qT~e~-i-~~~----~~~~vPiIVviNKiDl~~  201 (587)
T TIGR00487       163 VLVVAADDGVMPQTIEA-I-SHA----KAANVPIIVAINKIDKPE  201 (587)
T ss_pred             EEEEECCCCCCHhHHHH-H-HHH----HHcCCCEEEEEECccccc
Confidence            99999887432222211 2 111    234689999999999964

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd01889 SelB_euk SelB subfamily

Probab=99.75  E-value=1.2e-17  Score=114.61  Aligned_cols=115  Identities=16%  Similarity=0.169  Sum_probs=73.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC----C----CCC--CCcceeeeEEEEEE----------ECCeEEEEEEEeCCCccc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDT----F----EEL--SPTIGVDFKIKHVA----------LGGKKMKLAIWDTAGQER   73 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~----~----~~~--~~~~~~~~~~~~~~----------~~~~~~~~~i~D~~g~~~   73 (154)
                      +||+++|++++|||||+++|+...    +    ...  ..+...+.....+.          ..+..+.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            489999999999999999999731    1    111  12222222222222          123367899999999876


Q ss_pred             ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        74 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +........+.+|++++|+|+++......... +. ....    .+.|+++|+||+|+...
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~-~~-~~~~----~~~~~iiv~NK~Dl~~~  135 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAEC-LV-IGEI----LCKKLIVVLNKIDLIPE  135 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHH-HH-HHHH----cCCCEEEEEECcccCCH
Confidence            54433344567899999999987554333322 22 1111    25689999999999743

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.74  E-value=1.3e-17  Score=115.76  Aligned_cols=115  Identities=21%  Similarity=0.169  Sum_probs=74.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC------------------------------CCcceeeeEEEEEEECCeEEEEE
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEEL------------------------------SPTIGVDFKIKHVALGGKKMKLA   64 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~   64 (154)
                      ||+++|.+++|||||+++|+...-...                              ....+.+.......+.....++.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            589999999999999999975432110                              00123333333333333445788


Q ss_pred             EEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           65 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        65 i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +|||||+..+.......++.+|++++|+|+++...-.. .. ....+...   ...++++|+||+|+...
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~-~~~~~~~~---~~~~iIvviNK~D~~~~  145 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RR-HSYILSLL---GIRHVVVAVNKMDLVDY  145 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HH-HHHHHHHc---CCCcEEEEEEchhcccC
Confidence            99999998876666667889999999999987532222 11 11222221   12457889999999753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd04167 Snu114p Snu114p subfamily

Probab=99.74  E-value=1.9e-17  Score=115.32  Aligned_cols=112  Identities=25%  Similarity=0.339  Sum_probs=79.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC------------------CCcceeeeEEEEEEE-----CCeEEEEEEEeCCCc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEEL------------------SPTIGVDFKIKHVAL-----GGKKMKLAIWDTAGQ   71 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~   71 (154)
                      +|+++|+.++|||||+++|+.......                  ....+.+.......+     ++..+.+++|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            689999999999999999987543111                  011222322222222     355789999999999


Q ss_pred             ccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        72 ~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                      ..+......+++.+|++++|+|+++..+... .. |......    .+.|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~-~~~~~~~----~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ER-LIRHAIL----EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HH-HHHHHHH----cCCCEEEEEECcccC
Confidence            9988778888999999999999988765532 22 3333322    348999999999985

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.74  E-value=1.7e-17  Score=115.87  Aligned_cols=112  Identities=20%  Similarity=0.258  Sum_probs=78.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC--CC-------------CCcceeeeEEE--EEEEC--------CeEEEEEEEeCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFE--EL-------------SPTIGVDFKIK--HVALG--------GKKMKLAIWDTA   69 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~--~~-------------~~~~~~~~~~~--~~~~~--------~~~~~~~i~D~~   69 (154)
                      +|+++|+.++|||||+.+|+...-.  ..             ....+++....  .+.+.        ++.+.+++||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            7999999999999999999854320  00             01112222221  12222        447899999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        70 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                      |+..|......+++.+|++++|+|+.+..+...... |... .    ..+.|+++|+||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~-l~~~-~----~~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETV-LRQA-L----KERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHH-HHHH-H----HcCCCEEEEEECCCcc
Confidence            999999988999999999999999998765443222 2222 1    2357899999999985

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.74  E-value=3.6e-17  Score=131.41  Aligned_cols=115  Identities=18%  Similarity=0.181  Sum_probs=81.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc----------ccccc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL----------TSSYY   82 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~~   82 (154)
                      .++|+++|++|+|||||+|++.+.+. ......|.|...+...+......++++||||..++...          ...++
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l   81 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI   81 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence            37899999999999999999998765 33444555565555555556678899999998765432          11222


Q ss_pred             --cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           83 --RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        83 --~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                        .++|++++|+|+++.++..   . |..++.+.    +.|+++++||+|+.+++.
T Consensus        82 ~~~~aD~vI~VvDat~ler~l---~-l~~ql~e~----giPvIvVlNK~Dl~~~~~  129 (772)
T PRK09554         82 LSGDADLLINVVDASNLERNL---Y-LTLQLLEL----GIPCIVALNMLDIAEKQN  129 (772)
T ss_pred             hccCCCEEEEEecCCcchhhH---H-HHHHHHHc----CCCEEEEEEchhhhhccC
Confidence              4789999999998865432   2 33344433    689999999999965443

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.74  E-value=2.8e-17  Score=125.47  Aligned_cols=117  Identities=26%  Similarity=0.166  Sum_probs=78.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc-----------
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL-----------   77 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------   77 (154)
                      ...++|+++|.+++|||||+|++++....  ...+.++.+.....+..++  ..+.+|||||.......           
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence            35699999999999999999999987642  2223332222223333444  45778999995332111           


Q ss_pred             ccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        78 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ...+++.+|++++|+|++++.+.....  +...+..    .+.|+++|+||+|+.++.
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~~--i~~~~~~----~~~~~ivv~NK~Dl~~~~  300 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDLR--IAGLALE----AGRALVIVVNKWDLVDEK  300 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHH--HHHHHHH----cCCcEEEEEECccCCCHH
Confidence            123578899999999999876655442  2223322    367899999999997543

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.74  E-value=1.9e-17  Score=130.21  Aligned_cols=117  Identities=25%  Similarity=0.268  Sum_probs=85.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC--C------C------CCCcceeeeEEEEEEE-----CCeEEEEEEEeCCCcc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--E------E------LSPTIGVDFKIKHVAL-----GGKKMKLAIWDTAGQE   72 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~--~------~------~~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~~   72 (154)
                      ...+|+++|+.++|||||+.+|+...-  .      .      .....|++.......+     +++.+.+++|||||+.
T Consensus         6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~   85 (600)
T PRK05433          6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV   85 (600)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence            456999999999999999999986321  0      0      0112344444333222     5567899999999999


Q ss_pred             cccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        73 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      ++...+..+++.+|++++|+|+++......... |....     ..+.|+++|+||+|+..+
T Consensus        86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~-~~~~~-----~~~lpiIvViNKiDl~~a  141 (600)
T PRK05433         86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLAL-----ENDLEIIPVLNKIDLPAA  141 (600)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHH-----HCCCCEEEEEECCCCCcc
Confidence            999888899999999999999998765554444 43332     236789999999999654

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.73  E-value=3.7e-17  Score=124.49  Aligned_cols=120  Identities=19%  Similarity=0.138  Sum_probs=81.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC------------------------------CCCCcceeeeEEEEEEECCeE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE------------------------------ELSPTIGVDFKIKHVALGGKK   60 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~   60 (154)
                      ...++|+++|++++|||||+++|+...-.                              ......|.|.......+....
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~   83 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK   83 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence            35689999999999999999999843210                              001134455555555565667


Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      +.+.+|||||++.+.......++.+|++++|+|+++...+......+...+...   ...|+++++||+|+.+
T Consensus        84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~---~~~~iivviNK~Dl~~  153 (425)
T PRK12317         84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL---GINQLIVAINKMDAVN  153 (425)
T ss_pred             eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc---CCCeEEEEEEcccccc
Confidence            789999999998876655566788999999999987312211111122222222   2246899999999975

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.73  E-value=8e-18  Score=115.10  Aligned_cols=116  Identities=21%  Similarity=0.215  Sum_probs=80.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------------CcceeeeEEEEEEEC--CeEEEEEEEeCCCcc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-----------------PTIGVDFKIKHVALG--GKKMKLAIWDTAGQE   72 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~   72 (154)
                      ...+|+++|+.++|||||+.+|+........                 ...+.+.......+.  .....++++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            4589999999999999999999854421000                 011222222222222  455688999999999


Q ss_pred             cccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        73 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      .|.......++.+|++++|+|+.+.-.... .. ....+..    .+.|+++|.||+|+..
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~-~l~~~~~----~~~p~ivvlNK~D~~~  136 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EE-HLKILRE----LGIPIIVVLNKMDLIE  136 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HH-HHHHHHH----TT-SEEEEEETCTSSH
T ss_pred             ceeecccceecccccceeeeeccccccccc-cc-ccccccc----cccceEEeeeeccchh
Confidence            988888888999999999999987644322 22 2333333    3778999999999983

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd00880 Era_like Era (E

Probab=99.73  E-value=4.3e-17  Score=107.27  Aligned_cols=113  Identities=24%  Similarity=0.218  Sum_probs=76.7

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEE--EEEECCeEEEEEEEeCCCcccccc-------cccccccCccEE
Q 031704           18 LIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIK--HVALGGKKMKLAIWDTAGQERFRT-------LTSSYYRGAQGI   88 (154)
Q Consensus        18 v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~~~~   88 (154)
                      ++|++|+|||||++++.+..........+.+....  ..... ....+.+||+||......       ....+++.+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            57999999999999999876532222222222222  22222 145789999999765543       333467889999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      ++|+|+.+........  |....    ...+.|+++|+||+|+..+...
T Consensus        80 l~v~~~~~~~~~~~~~--~~~~~----~~~~~~~ivv~nK~D~~~~~~~  122 (163)
T cd00880          80 LFVVDADLRADEEEEK--LLELL----RERGKPVLLVLNKIDLLPEEEE  122 (163)
T ss_pred             EEEEeCCCCCCHHHHH--HHHHH----HhcCCeEEEEEEccccCChhhH
Confidence            9999999887765553  22222    2357899999999999766544

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=7.6e-17  Score=107.12  Aligned_cols=122  Identities=32%  Similarity=0.559  Sum_probs=106.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      ...++++++|..|.||||+.++.+.+++ ..+.++.|.......+.-+...+++..|||.|++.+-.....++-++.+.+
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            4679999999999999999999999999 678888887776666655555789999999999999999999888899999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ++||++.+-+..+... |...+.+.+.  ++||++.|||.|..+..
T Consensus        88 imFdVtsr~t~~n~~r-whrd~~rv~~--NiPiv~cGNKvDi~~r~  130 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPR-WHRDLVRVRE--NIPIVLCGNKVDIKARK  130 (216)
T ss_pred             EEeeeeehhhhhcchH-HHHHHHHHhc--CCCeeeeccceeccccc
Confidence            9999999999999999 8888877644  48999999999986544

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.72  E-value=1.3e-16  Score=125.17  Aligned_cols=113  Identities=24%  Similarity=0.303  Sum_probs=81.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC---C-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDT---F-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      +.|+++|..++|||||+++|.+..   + .+.....+.+.....+..++  ..+.+||+||++.|.......+..+|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            368999999999999999999743   2 12233344444444455544  78899999999999888888889999999


Q ss_pred             EEEECCCc---chHHHHHHHHHHHHhhhcCCCCCc-EEEEEeCCCCCCchhh
Q 031704           90 MVYDVTRR---DTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKVCPWRL  137 (154)
Q Consensus        90 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl~~~~~~  137 (154)
                      +|+|+++.   ++.+.+     ..+..    .+.| +++|+||+|+.++...
T Consensus        79 LVVDa~~G~~~qT~ehl-----~il~~----lgi~~iIVVlNK~Dlv~~~~~  121 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHL-----AVLDL----LGIPHTIVVITKADRVNEEEI  121 (581)
T ss_pred             EEEECCCCCcHHHHHHH-----HHHHH----cCCCeEEEEEECCCCCCHHHH
Confidence            99999873   333222     22222    2456 9999999999876543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.72  E-value=6.3e-17  Score=128.78  Aligned_cols=119  Identities=17%  Similarity=0.170  Sum_probs=84.9

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCcce--eeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIG--VDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   86 (154)
                      ..+.++|+++|..++|||||++++....+.. .....+  .......+..++....+.||||||++.|..++..+++.+|
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD  320 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD  320 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence            3466899999999999999999999877632 111111  1222223333445678999999999999999988999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      ++++|+|+++......... |. .+    ...+.|+++++||+|+...
T Consensus       321 iaILVVDA~dGv~~QT~E~-I~-~~----k~~~iPiIVViNKiDl~~~  362 (742)
T CHL00189        321 IAILIIAADDGVKPQTIEA-IN-YI----QAANVPIIVAINKIDKANA  362 (742)
T ss_pred             EEEEEEECcCCCChhhHHH-HH-HH----HhcCceEEEEEECCCcccc
Confidence            9999999987533222222 21 12    2346899999999999754

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.72  E-value=3.4e-17  Score=124.57  Aligned_cols=126  Identities=25%  Similarity=0.310  Sum_probs=99.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      .+.+||+++|..|+||||||-+++..++++..|..-... .....+....+...++|++..++-+......++++|++++
T Consensus         7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i-~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l   85 (625)
T KOG1707|consen    7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRI-LIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL   85 (625)
T ss_pred             ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCcc-ccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence            355999999999999999999999999955554432111 1223334455668899999777766667778999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCC-CCCcEEEEEeCCCCCCchhh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTN-QDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      +|+++++.+++.+..+|+..++...+. .+.|+|+||||+|+......
T Consensus        86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~  133 (625)
T KOG1707|consen   86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN  133 (625)
T ss_pred             EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence            999999999999999999999986433 46799999999999755544

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.71  E-value=1.8e-17  Score=111.59  Aligned_cols=122  Identities=22%  Similarity=0.263  Sum_probs=76.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEE-CCeEEEEEEEeCCCccccccccccc---ccCccE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVAL-GGKKMKLAIWDTAGQERFRTLTSSY---YRGAQG   87 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~---~~~~~~   87 (154)
                      +...|+++|+.|+|||+|+.+|..+..........  ... .+.+ ......+.++|+|||++.+......   +..+.+
T Consensus         2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e--~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~   78 (181)
T PF09439_consen    2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSME--NNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG   78 (181)
T ss_dssp             ---EEEEE-STTSSHHHHHHHHHHSS---B---SS--EEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred             CCceEEEEcCCCCCHHHHHHHHhcCCcCCeecccc--CCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence            34679999999999999999999986632222221  111 1111 1233367889999999988765554   778999


Q ss_pred             EEEEEECCC-cchHHHHHHHHHHHHhhhc-CCCCCcEEEEEeCCCCCCchh
Q 031704           88 IIMVYDVTR-RDTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        88 ~v~v~d~~~-~~s~~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      +|||+|.+. ........++++..+.... .....|++|++||.|+..++.
T Consensus        79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~  129 (181)
T PF09439_consen   79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP  129 (181)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred             EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence            999999874 4456666776666665542 345779999999999987654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.71  E-value=1.6e-16  Score=127.36  Aligned_cols=116  Identities=17%  Similarity=0.190  Sum_probs=83.4

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEE--EEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIK--HVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (154)
                      ..+.+.|+++|..++|||||+++|...++... ...+++....  .+..++  ..++||||||++.|..++...++.+|+
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~-e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDi  363 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAG-EAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDI  363 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCcccc-ccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCE
Confidence            45778999999999999999999988776321 1223333333  333333  578999999999999999888999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +++|+|+++...-..... |. ..    ...+.|++|++||+|+...
T Consensus       364 aILVVdAddGv~~qT~e~-i~-~a----~~~~vPiIVviNKiDl~~a  404 (787)
T PRK05306        364 VVLVVAADDGVMPQTIEA-IN-HA----KAAGVPIIVAINKIDKPGA  404 (787)
T ss_pred             EEEEEECCCCCCHhHHHH-HH-HH----HhcCCcEEEEEECcccccc
Confidence            999999987432222211 21 11    2346899999999999653

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.71  E-value=1.5e-16  Score=109.23  Aligned_cols=117  Identities=18%  Similarity=0.093  Sum_probs=80.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC---------------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF---------------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL   77 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   77 (154)
                      .++|+++|..++|||||+++|+....               .......+.+.......+......+.++||||+..+...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            37999999999999999999986411               011113445555555555555667889999999888777


Q ss_pred             ccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCc-EEEEEeCCCCCCch
Q 031704           78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKVCPW  135 (154)
Q Consensus        78 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl~~~~  135 (154)
                      ....+..+|++++|+|+...-.- .... ....+..    .+.| ++++.||+|+..+.
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~-~~~~-~~~~~~~----~~~~~iIvviNK~D~~~~~  134 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMP-QTRE-HLLLARQ----VGVPYIVVFLNKADMVDDE  134 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcH-HHHH-HHHHHHH----cCCCcEEEEEeCCCCCCcH
Confidence            77778899999999998864322 2222 2223333    2455 78999999997433

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.71  E-value=1e-16  Score=128.61  Aligned_cols=116  Identities=23%  Similarity=0.217  Sum_probs=81.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----------cccc-c
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----------FRTL-T   78 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~   78 (154)
                      ..+||+++|.+|+|||||+|++++.+.  ....+.++.+.....+.+++..  +.+|||||...          +... .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence            458999999999999999999999875  2334444444444455566554  56899999531          2211 1


Q ss_pred             cccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        79 ~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ..+++++|++++|+|+++..+...... + ..+..    .+.|+++|+||+|+.++.
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~i-~-~~~~~----~~~piIiV~NK~DL~~~~  577 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLKV-M-SMAVD----AGRALVLVFNKWDLMDEF  577 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHHH-H-HHHHH----cCCCEEEEEEchhcCChh
Confidence            234688999999999999877766543 3 23322    368999999999997543

>cd01850 CDC_Septin CDC/Septin

Probab=99.71  E-value=6.3e-16  Score=111.45  Aligned_cols=119  Identities=19%  Similarity=0.292  Sum_probs=76.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCC-----------CCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc-----
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEE-----------LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR-----   75 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----   75 (154)
                      -.++|+++|.+|+|||||+|++++.....           ..++.+.......+..++..+.+.+|||||.....     
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            35899999999999999999999987622           22333444445555667778899999999932211     


Q ss_pred             ---------------------cccccccc--CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           76 ---------------------TLTSSYYR--GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        76 ---------------------~~~~~~~~--~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                                           ......+.  ++|+++++++.+... +....   .+.++...  ...|+++|+||+|+.
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D---~~~lk~l~--~~v~vi~VinK~D~l  156 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLD---IEFMKRLS--KRVNIIPVIAKADTL  156 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHH---HHHHHHHh--ccCCEEEEEECCCcC
Confidence                                 01112233  468888888876522 11111   12222221  257999999999997


Q ss_pred             Cchh
Q 031704          133 CPWR  136 (154)
Q Consensus       133 ~~~~  136 (154)
                      .+.+
T Consensus       157 ~~~e  160 (276)
T cd01850         157 TPEE  160 (276)
T ss_pred             CHHH
Confidence            6443

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.71  E-value=7.1e-17  Score=111.68  Aligned_cols=118  Identities=17%  Similarity=0.130  Sum_probs=72.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEE--EEC---------------------------C----
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHV--ALG---------------------------G----   58 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~--~~~---------------------------~----   58 (154)
                      ++|+++|+.++|||||+..+.+...  .......+.+......  ...                           +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            4789999999999999999975421  0111111111111100  000                           1    


Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ....+.||||||++.+.......+..+|++++|+|++++.........|. .+...   ...|+++|+||+|+.++.
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~-~~~~~---~~~~iiivvNK~Dl~~~~  153 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLA-ALEIM---GLKHIIIVQNKIDLVKEE  153 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHH-HHHHc---CCCcEEEEEEchhccCHH
Confidence            12578999999999887777777888999999999987421111112121 22221   224789999999997643

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.71  E-value=1.3e-16  Score=114.59  Aligned_cols=115  Identities=18%  Similarity=0.150  Sum_probs=78.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC--C---------------CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF--E---------------ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL   77 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   77 (154)
                      +|+++|++++|||||+++++...-  .               ......+.+.......+.....+++++||||+..+...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            589999999999999999974211  0               01112233444333333334567889999999888888


Q ss_pred             ccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        78 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      +...++.+|++++|+|+.+...-.. .. +.+.+..    .+.|++++.||+|+....
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~-~~~~~~~----~~~p~ivviNK~D~~~a~  132 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQT-ET-VWRQADR----YNVPRIAFVNKMDRTGAD  132 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHHH-HH-HHHHHHH----cCCCEEEEEECCCCCCCC
Confidence            8888999999999999987543222 22 2223332    367899999999997543

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.71  E-value=1.3e-16  Score=100.93  Aligned_cols=105  Identities=25%  Similarity=0.226  Sum_probs=68.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc---------ccccccccc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF---------RTLTSSYYR   83 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~   83 (154)
                      +|+++|.+|+|||||+|+|++.+.  ....+..+.......+..++..+  .++||||-...         .......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            689999999999999999998654  22223222233334555666554  58999994321         111333357


Q ss_pred             CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeC
Q 031704           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK  128 (154)
Q Consensus        84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK  128 (154)
                      .+|++++|+|..++.. +.... +.+.+    . .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~-~~~~l----~-~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKN-ILREL----K-NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHH-HHHHH----H-TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHH-HHHHH----h-cCCCEEEEEcC
Confidence            8999999999777322 22222 23333    2 57899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK10218 GTP-binding protein; Provisional

Probab=99.71  E-value=2.4e-16  Score=123.71  Aligned_cols=118  Identities=21%  Similarity=0.221  Sum_probs=89.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC--CCCC-------------CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSD--TFEE-------------LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT   76 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   76 (154)
                      ...+|+++|+.++|||||+++|+..  .+..             .....+++.......+....+.+++|||||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            4579999999999999999999963  2211             123456677776666666778999999999999998


Q ss_pred             cccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        77 ~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      .+..+++.+|++++|+|+++..... ... +...+..    .+.|.++++||+|+..++
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~q-t~~-~l~~a~~----~gip~IVviNKiD~~~a~  136 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQ-TRF-VTKKAFA----YGLKPIVVINKVDRPGAR  136 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHH-HHH-HHHHHHH----cCCCEEEEEECcCCCCCc
Confidence            8999999999999999998754322 222 2223222    367889999999997554

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.70  E-value=8.7e-17  Score=124.66  Aligned_cols=119  Identities=17%  Similarity=0.162  Sum_probs=84.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc--CCCC-------------------CCCCcceeeeEEEEEEECCeEEEEEEEeCC
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTS--DTFE-------------------ELSPTIGVDFKIKHVALGGKKMKLAIWDTA   69 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~--~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   69 (154)
                      .++.+|+++|+.++|||||+++|+.  +...                   ......+++.......+....+.+++||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            4567999999999999999999973  1100                   001122444555555555556789999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        70 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      |+.+|......+++.+|++++|+|+++.... .... +....    ...+.|+++++||+|+....
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~-l~~~~----~~~~iPiiv~iNK~D~~~a~  147 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRK-LMEVC----RLRDTPIFTFINKLDRDGRE  147 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHH-HHHHH----HhcCCCEEEEEECCcccccC
Confidence            9999888777789999999999999875422 2223 22332    33478999999999997544

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.70  E-value=8.8e-17  Score=107.09  Aligned_cols=101  Identities=18%  Similarity=0.135  Sum_probs=66.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc----ccccccCccEEEE
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL----TSSYYRGAQGIIM   90 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----~~~~~~~~~~~v~   90 (154)
                      +|+++|.+++|||||+|++.+... ...++.+       ..+...    .+|||||.......    ....++++|++++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~-~~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~   70 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYT-LARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY   70 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc-cCccceE-------EEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence            799999999999999999876432 1112211       122222    26999996322211    1223688999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      |+|+++..++..  . |...+     ..+.|+++++||+|+.+..
T Consensus        71 v~d~~~~~s~~~--~-~~~~~-----~~~~~ii~v~nK~Dl~~~~  107 (158)
T PRK15467         71 VHGANDPESRLP--A-GLLDI-----GVSKRQIAVISKTDMPDAD  107 (158)
T ss_pred             EEeCCCcccccC--H-HHHhc-----cCCCCeEEEEEccccCccc
Confidence            999998876532  2 33332     1356899999999996543

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.69  E-value=2.8e-16  Score=119.67  Aligned_cols=121  Identities=17%  Similarity=0.121  Sum_probs=81.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCC--CC----------------------------CCCCcceeeeEEEEEEECCeE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDT--FE----------------------------ELSPTIGVDFKIKHVALGGKK   60 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~--~~----------------------------~~~~~~~~~~~~~~~~~~~~~   60 (154)
                      ...++|+++|+.++|||||+.+|+...  ..                            ......+.+.......+....
T Consensus         5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~   84 (426)
T TIGR00483         5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK   84 (426)
T ss_pred             CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence            356899999999999999999998521  10                            000122444555555555566


Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      +.+.+|||||++.|.......++.+|++++|+|+++.+++......+...+...  ....|+++++||+|+.+
T Consensus        85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~--~~~~~iIVviNK~Dl~~  155 (426)
T TIGR00483        85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART--LGINQLIVAINKMDSVN  155 (426)
T ss_pred             eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH--cCCCeEEEEEEChhccC
Confidence            789999999998887666666789999999999998754321111011111111  12357999999999975

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.69  E-value=1.9e-16  Score=118.08  Aligned_cols=123  Identities=24%  Similarity=0.232  Sum_probs=85.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeE--EEEEEECCeEEEEEEEeCCCc----------cccccc-c
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFK--IKHVALGGKKMKLAIWDTAGQ----------ERFRTL-T   78 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~g~----------~~~~~~-~   78 (154)
                      ..+||+++|.|++|||||+|++++++-.-..+..|.|..  ...+..+++  ++.++||.|.          +.|+-. .
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehhh
Confidence            579999999999999999999999987545555554443  444555555  5667899992          222221 2


Q ss_pred             cccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        79 ~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      ...+..+|++++|+|++.+-+-.+.      .+..+......++++|.||+|+.++++...+++
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~------~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~  312 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDL------RIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEF  312 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHH------HHHHHHHHcCCCeEEEEEccccCCchhhHHHHH
Confidence            3447789999999999987654333      222222345788999999999987754444333

>TIGR00503 prfC peptide chain release factor 3

Probab=99.69  E-value=2.7e-16  Score=121.97  Aligned_cols=119  Identities=18%  Similarity=0.182  Sum_probs=84.9

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC--CCC-------------------CCCCcceeeeEEEEEEECCeEEEEEEEeCC
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSD--TFE-------------------ELSPTIGVDFKIKHVALGGKKMKLAIWDTA   69 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~--~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   69 (154)
                      .+..+|+++|++++|||||+++++..  ...                   ......+++.......+....+.+++||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            45679999999999999999998631  110                   001123455555556666667889999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        70 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      |+..|.......++.+|++++|+|+++.-. ..... +.+..+    ..+.|+++++||+|+....
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~-l~~~~~----~~~~PiivviNKiD~~~~~  148 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRK-LMEVTR----LRDTPIFTFMNKLDRDIRD  148 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHH-HHHHHH----hcCCCEEEEEECccccCCC
Confidence            999888777778899999999999987421 22223 333333    2468999999999996443

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.68  E-value=4.5e-16  Score=111.16  Aligned_cols=138  Identities=20%  Similarity=0.206  Sum_probs=95.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----cc---ccccccccCcc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----FR---TLTSSYYRGAQ   86 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~---~~~~~~~~~~~   86 (154)
                      .+-++|-|++|||||++.+...+. ...++.++.......+..++ ...+.+-|.||.-+    -+   .....++.+|+
T Consensus       198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~  276 (366)
T KOG1489|consen  198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK  276 (366)
T ss_pred             ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccc-cceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence            456799999999999999998877 55566666555555443332 33488899999432    12   22455577899


Q ss_pred             EEEEEEECCCc---chHHHHHHHHHHHHhhh-cCCCCCcEEEEEeCCCCCCchhhhhhhhhhhhhcc-ccccC
Q 031704           87 GIIMVYDVTRR---DTFTNLADIWAKEIDLY-STNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLSK-FYCSS  154 (154)
Q Consensus        87 ~~v~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~S  154 (154)
                      ..++|+|++..   ..++.+..+|.+ +..+ ....+.|.++|+||+|+.+.++..+.++.+..... ++|+|
T Consensus       277 ~l~fVvD~s~~~~~~p~~~~~lL~~E-Le~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pvs  348 (366)
T KOG1489|consen  277 GLLFVVDLSGKQLRNPWQQLQLLIEE-LELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPVS  348 (366)
T ss_pred             eEEEEEECCCcccCCHHHHHHHHHHH-HHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCCcEEEee
Confidence            99999999988   777777774443 3333 24567899999999999766665556665544433 56655

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.68  E-value=3.5e-16  Score=122.76  Aligned_cols=116  Identities=20%  Similarity=0.230  Sum_probs=85.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC--CCCCC-------------CCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD--TFEEL-------------SPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLT   78 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   78 (154)
                      .+|+++|+.++|||||+++|+..  .+...             ....|++.......+....+.+++|||||+.+|....
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence            48999999999999999999863  22111             1233555555555454556789999999999999888


Q ss_pred             cccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        79 ~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ..+++.+|++++|+|+.+.. ...... |...+..    .+.|+++|+||+|+.+++
T Consensus        82 ~~~l~~aD~alLVVDa~~G~-~~qT~~-~l~~a~~----~~ip~IVviNKiD~~~a~  132 (594)
T TIGR01394        82 ERVLGMVDGVLLLVDASEGP-MPQTRF-VLKKALE----LGLKPIVVINKIDRPSAR  132 (594)
T ss_pred             HHHHHhCCEEEEEEeCCCCC-cHHHHH-HHHHHHH----CCCCEEEEEECCCCCCcC
Confidence            88999999999999998743 233333 4444443    367899999999997544

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=1.1e-16  Score=104.26  Aligned_cols=119  Identities=22%  Similarity=0.337  Sum_probs=95.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      +.-|++++|-.|+|||||++.|...+.....||.+.+  +.+..+.  .+.++.+|..|+...+..|..++..+|++++.
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPT--SE~l~Ig--~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l   94 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT--SEELSIG--GMTFTTFDLGGHLQARRVWKDYFPQVDAIVYL   94 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHccccccccCCCcCCC--hHHheec--CceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence            3458999999999999999999988887777776533  3344443  35678899999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      +|+.|.+.+.+.+..+...+... .-...|+++.+||+|...+.
T Consensus        95 vda~d~er~~es~~eld~ll~~e-~la~vp~lilgnKId~p~a~  137 (193)
T KOG0077|consen   95 VDAYDQERFAESKKELDALLSDE-SLATVPFLILGNKIDIPYAA  137 (193)
T ss_pred             eehhhHHHhHHHHHHHHHHHhHH-HHhcCcceeecccccCCCcc
Confidence            99999999988877444333332 44678999999999997554

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.68  E-value=4.7e-16  Score=108.87  Aligned_cols=120  Identities=18%  Similarity=0.239  Sum_probs=75.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEE-CCeEEEEEEEeCCCcccccc-----cccccccCccEE
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVAL-GGKKMKLAIWDTAGQERFRT-----LTSSYYRGAQGI   88 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~~~~~   88 (154)
                      ||+++|++++||||+.+.++.+-.+......+.|.....-.+ ....+.+++||+||+..+-.     .....+++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L   80 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL   80 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence            799999999999999999998766544444444333333322 23445899999999875433     345568999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhh-cCCCCCcEEEEEeCCCCCCch
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLY-STNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      |+|+|+.+.+-.+++.. +...+... ..+++..+-++.+|.|+..+.
T Consensus        81 IyV~D~qs~~~~~~l~~-~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~  127 (232)
T PF04670_consen   81 IYVFDAQSDDYDEDLAY-LSDCIEALRQYSPNIKVFVFIHKMDLLSED  127 (232)
T ss_dssp             EEEEETT-STCHHHHHH-HHHHHHHHHHHSTT-EEEEEEE-CCCS-HH
T ss_pred             EEEEEcccccHHHHHHH-HHHHHHHHHHhCCCCeEEEEEeecccCCHH
Confidence            99999996555555544 43333322 136788999999999997543

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.67  E-value=1.5e-15  Score=100.78  Aligned_cols=124  Identities=22%  Similarity=0.274  Sum_probs=87.7

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC--------CCc---ceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEEL--------SPT---IGVDFKIKHVALGGKKMKLAIWDTAGQERFRT   76 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~--------~~~---~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   76 (154)
                      ...-...||++.|+.++||||++..+..+.....        ...   ++..........+ ....+.++|||||++|+.
T Consensus         5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~-~~~~v~LfgtPGq~RF~f   83 (187)
T COG2229           5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD-EDTGVHLFGTPGQERFKF   83 (187)
T ss_pred             cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc-CcceEEEecCCCcHHHHH
Confidence            3445678999999999999999999987764100        001   1111111122222 234688999999999999


Q ss_pred             cccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        77 ~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      +|..+.+.+++++++.|.+.+..+ .... ..+.+...   ..+|++|.+||.||.+.+..
T Consensus        84 m~~~l~~ga~gaivlVDss~~~~~-~a~~-ii~f~~~~---~~ip~vVa~NK~DL~~a~pp  139 (187)
T COG2229          84 MWEILSRGAVGAIVLVDSSRPITF-HAEE-IIDFLTSR---NPIPVVVAINKQDLFDALPP  139 (187)
T ss_pred             HHHHHhCCcceEEEEEecCCCcch-HHHH-HHHHHhhc---cCCCEEEEeeccccCCCCCH
Confidence            999999999999999999998887 3333 33333322   22999999999999877654

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.67  E-value=4.9e-16  Score=111.75  Aligned_cols=114  Identities=22%  Similarity=0.268  Sum_probs=77.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-CCC------C----------cceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFE-ELS------P----------TIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL   77 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~-~~~------~----------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   77 (154)
                      +|+++|++|+|||||+++++..... ...      .          ..+.+.......+....+.+++|||||+..+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            5899999999999999999753321 000      0          0111222222222223467899999999888777


Q ss_pred             ccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        78 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      ...+++.+|++++|+|+++....... ..|. .+.    ..+.|.++++||+|+...
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~-~~~----~~~~p~iivvNK~D~~~~  131 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTE-KLWE-FAD----EAGIPRIIFINKMDRERA  131 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHH-HHH----HcCCCEEEEEECCccCCC
Confidence            88889999999999999886554322 2233 222    236799999999999755

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.67  E-value=5.5e-16  Score=110.31  Aligned_cols=129  Identities=22%  Similarity=0.230  Sum_probs=88.4

Q ss_pred             CcccCCCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----------
Q 031704            4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----------   73 (154)
Q Consensus         4 ~~~~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------   73 (154)
                      +++++...+.++++++|.||+|||||.|.+++.+....+.....|-......+......+.|+||||.-.          
T Consensus        63 srde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~  142 (379)
T KOG1423|consen   63 SRDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLM  142 (379)
T ss_pred             CCCchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHH
Confidence            3445667889999999999999999999999999854444443344444444455566899999999211          


Q ss_pred             --ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           74 --FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        74 --~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                        +-+.....+..+|++++++|+++........  .+..+..+   ..+|=++|+||.|....+.+
T Consensus       143 ~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~--vl~~l~~y---s~ips~lvmnkid~~k~k~~  203 (379)
T KOG1423|consen  143 MSVLQNPRDAAQNADCVVVVVDASATRTPLHPR--VLHMLEEY---SKIPSILVMNKIDKLKQKRL  203 (379)
T ss_pred             HHhhhCHHHHHhhCCEEEEEEeccCCcCccChH--HHHHHHHH---hcCCceeeccchhcchhhhH
Confidence              1122344567899999999999744332221  22233433   46788999999998766654

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=4.3e-17  Score=106.90  Aligned_cols=121  Identities=29%  Similarity=0.482  Sum_probs=93.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC--------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR   83 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   83 (154)
                      ..+.++++|..++|||||+......-.        ....++.|  .....+.++  ...+.+||..|++..+++|..++.
T Consensus        16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvg--Lnig~i~v~--~~~l~fwdlgGQe~lrSlw~~yY~   91 (197)
T KOG0076|consen   16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVG--LNIGTIEVC--NAPLSFWDLGGQESLRSLWKKYYW   91 (197)
T ss_pred             hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccc--eeecceeec--cceeEEEEcCChHHHHHHHHHHHH
Confidence            458899999999999999998754322        12234444  333344444  447889999999999999999999


Q ss_pred             CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      .+|++++++|+++++.|+.....+...+..- ...+.|+++.+||.|+.++..+
T Consensus        92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E-~leg~p~L~lankqd~q~~~~~  144 (197)
T KOG0076|consen   92 LAHGIIYVIDATDRERFEESKTAFEKVVENE-KLEGAPVLVLANKQDLQNAMEA  144 (197)
T ss_pred             HhceeEEeecCCCHHHHHHHHHHHHHHHHHH-HhcCCchhhhcchhhhhhhhhH
Confidence            9999999999999999988877444444433 5678999999999999877654

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.67  E-value=1.2e-15  Score=103.11  Aligned_cols=122  Identities=22%  Similarity=0.247  Sum_probs=91.5

Q ss_pred             cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCC----------ccccc
Q 031704            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG----------QERFR   75 (154)
Q Consensus         7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~   75 (154)
                      +-+.+...-|+++|.+++|||||||++++++- +..+.+.|.|.....+.+++.   +.++|.||          .+.+.
T Consensus        18 ~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~   94 (200)
T COG0218          18 QYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWK   94 (200)
T ss_pred             hCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHH
Confidence            34455678999999999999999999999775 788889998999888888775   67889999          33445


Q ss_pred             ccccccccC---ccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           76 TLTSSYYRG---AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        76 ~~~~~~~~~---~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      .+...|++.   -.++++++|+..+-.-.+.  ..++.+..    .++|+++++||+|.....+.
T Consensus        95 ~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~~----~~i~~~vv~tK~DKi~~~~~  153 (200)
T COG0218          95 KLIEEYLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLLE----LGIPVIVVLTKADKLKKSER  153 (200)
T ss_pred             HHHHHHHhhchhheEEEEEEECCCCCcHHHH--HHHHHHHH----cCCCeEEEEEccccCChhHH
Confidence            555556543   4788899998765443222  23444444    48999999999999876443

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.67  E-value=2.6e-15  Score=105.88  Aligned_cols=82  Identities=26%  Similarity=0.253  Sum_probs=58.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc-------ccccccccCcc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR-------TLTSSYYRGAQ   86 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~~   86 (154)
                      +++++|.+|+|||||++++.+... ....+..+.+.....+.+++  ..+++||+||.....       .....+++.+|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            689999999999999999998764 23333333334444444444  578899999964322       12344688999


Q ss_pred             EEEEEEECCCcc
Q 031704           87 GIIMVYDVTRRD   98 (154)
Q Consensus        87 ~~v~v~d~~~~~   98 (154)
                      ++++|+|++++.
T Consensus        80 ~il~V~D~t~~~   91 (233)
T cd01896          80 LILMVLDATKPE   91 (233)
T ss_pred             EEEEEecCCcch
Confidence            999999998755

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.67  E-value=4.6e-16  Score=116.38  Aligned_cols=118  Identities=21%  Similarity=0.200  Sum_probs=84.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------cccccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TSSYYR   83 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~   83 (154)
                      ..+|++++|.||+|||||+|.|++.+-+-.+.-.|.|-...+-.++-..+.+.++||.|..+-...        ....+.
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~  295 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIE  295 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHH
Confidence            458999999999999999999999988655555555555555444445577888999995432222        233477


Q ss_pred             CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      ++|.+++++|.+.+.+-....-++       ....+.|+++|.||.||..+..
T Consensus       296 ~ADlvL~v~D~~~~~~~~d~~~~~-------~~~~~~~~i~v~NK~DL~~~~~  341 (454)
T COG0486         296 EADLVLFVLDASQPLDKEDLALIE-------LLPKKKPIIVVLNKADLVSKIE  341 (454)
T ss_pred             hCCEEEEEEeCCCCCchhhHHHHH-------hcccCCCEEEEEechhcccccc
Confidence            899999999999863333322212       1456789999999999976544

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.67  E-value=6.8e-16  Score=121.34  Aligned_cols=107  Identities=21%  Similarity=0.208  Sum_probs=73.2

Q ss_pred             cCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc------ccccc--cCccEEEE
Q 031704           20 GDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL------TSSYY--RGAQGIIM   90 (154)
Q Consensus        20 G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~~~~v~   90 (154)
                      |.+|+|||||+|++.+... ....+..+.+.....+..++  .++++|||||..++...      ...++  +.+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999998876 34445444444444555554  35789999998776543      22232  36899999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      |+|+++.+..   .. +..++.+    .+.|+++|+||+|+.+++.
T Consensus        79 VvDat~ler~---l~-l~~ql~~----~~~PiIIVlNK~Dl~~~~~  116 (591)
T TIGR00437        79 VVDASNLERN---LY-LTLQLLE----LGIPMILALNLVDEAEKKG  116 (591)
T ss_pred             EecCCcchhh---HH-HHHHHHh----cCCCEEEEEehhHHHHhCC
Confidence            9999875432   22 2223322    3689999999999964443

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.66  E-value=5.9e-16  Score=121.20  Aligned_cols=112  Identities=22%  Similarity=0.202  Sum_probs=77.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----CcceeeeEEEEE------------EECCeEEEEEEEeCCCccccc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELS-----PTIGVDFKIKHV------------ALGGKKMKLAIWDTAGQERFR   75 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~~~~~-----~~~~~~~~~~~~------------~~~~~~~~~~i~D~~g~~~~~   75 (154)
                      .+-|+++|.+++|||||++++.+..+....     ++.+.+......            .+......+.+|||||++.|.
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~   83 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT   83 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence            457999999999999999999988763221     122221111100            000011238899999999999


Q ss_pred             ccccccccCccEEEEEEECCCc---chHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           76 TLTSSYYRGAQGIIMVYDVTRR---DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        76 ~~~~~~~~~~~~~v~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      .++..+++.+|++++|+|+++.   .+++.+.     .++    ..+.|+++++||+|+..
T Consensus        84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-----~l~----~~~vpiIVv~NK~Dl~~  135 (590)
T TIGR00491        84 NLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILR----MYKTPFVVAANKIDRIP  135 (590)
T ss_pred             HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH-----HHH----HcCCCEEEEEECCCccc
Confidence            9888889999999999999873   3333322     222    23679999999999964

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.66  E-value=8.2e-16  Score=105.91  Aligned_cols=111  Identities=23%  Similarity=0.265  Sum_probs=69.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCccee---eeEEEEEEECCeEEEEEEEeCCCcccccccc-----ccccc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGV---DFKIKHVALGGKKMKLAIWDTAGQERFRTLT-----SSYYR   83 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-----~~~~~   83 (154)
                      ++||+++|.+|+|||||+|.+++..... .....+.   +.....+... ....+.+|||||........     ...+.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            3799999999999999999999865521 2222221   1111112111 12368999999965322222     22256


Q ss_pred             CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                      ++|+++++.+ .   .+......|.+.+...    +.|+++|+||+|+.
T Consensus        80 ~~d~~l~v~~-~---~~~~~d~~~~~~l~~~----~~~~ilV~nK~D~~  120 (197)
T cd04104          80 EYDFFIIISS-T---RFSSNDVKLAKAIQCM----GKKFYFVRTKVDRD  120 (197)
T ss_pred             CcCEEEEEeC-C---CCCHHHHHHHHHHHHh----CCCEEEEEecccch
Confidence            7898888743 2   2344444466666654    57899999999994

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.65  E-value=2.2e-15  Score=113.77  Aligned_cols=120  Identities=18%  Similarity=0.095  Sum_probs=81.8

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-------C--------CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-------E--------ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF   74 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-------~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (154)
                      ....++|+++|..++|||||+++|++...       .        ......|.|.....+.+......+.+|||||++.|
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f   88 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence            45679999999999999999999974210       0        11112455555566666656678899999999988


Q ss_pred             cccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcE-EEEEeCCCCCCch
Q 031704           75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK-LLVGNKVDKVCPW  135 (154)
Q Consensus        75 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-ivv~nK~Dl~~~~  135 (154)
                      ..........+|++++|+|+.+...-.. .. ....+...    ++|. ++++||+|+.++.
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e-~l~~~~~~----gi~~iIvvvNK~Dl~~~~  144 (394)
T TIGR00485        89 VKNMITGAAQMDGAILVVSATDGPMPQT-RE-HILLARQV----GVPYIVVFLNKCDMVDDE  144 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHHH-HH-HHHHHHHc----CCCEEEEEEEecccCCHH
Confidence            7666666778899999999987432221 22 22233322    4554 4689999997644

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK13351 elongation factor G; Reviewed

Probab=99.65  E-value=7.9e-16  Score=123.29  Aligned_cols=119  Identities=18%  Similarity=0.198  Sum_probs=83.9

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC--------------CCCC---CcceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF--------------EELS---PTIGVDFKIKHVALGGKKMKLAIWDTAGQER   73 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~--------------~~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   73 (154)
                      +...+|+++|..++|||||+++|+...-              ....   ...+.+.......+....+.+++|||||+.+
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d   85 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID   85 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence            3568999999999999999999985321              0000   0122233322223333457899999999999


Q ss_pred             ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        74 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      +......+++.+|++++|+|+++......... |. .+.    ..+.|+++++||+|+...+
T Consensus        86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~-~~-~~~----~~~~p~iiviNK~D~~~~~  141 (687)
T PRK13351         86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETV-WR-QAD----RYGIPRLIFINKMDRVGAD  141 (687)
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HH-HHH----hcCCCEEEEEECCCCCCCC
Confidence            88888888999999999999998766554333 43 222    2368999999999997653

>COG2262 HflX GTPases [General function prediction only]

Probab=99.65  E-value=1.6e-15  Score=111.82  Aligned_cols=124  Identities=21%  Similarity=0.222  Sum_probs=92.7

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc---------ccccccc
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ---------ERFRTLT   78 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~---------~~~~~~~   78 (154)
                      .....+.|+++|-+|+|||||+|++.+... .....+.+.+..++.+.+.+ ...+.+-||.|-         +.|+...
T Consensus       188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL  266 (411)
T COG2262         188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL  266 (411)
T ss_pred             cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHH
Confidence            345678999999999999999999998776 45556666677777777765 335667799993         2333332


Q ss_pred             cccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        79 ~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      .. ...+|.+++|+|++++...+.+.. ....+... ...++|+++|.||+|+..+..
T Consensus       267 EE-~~~aDlllhVVDaSdp~~~~~~~~-v~~vL~el-~~~~~p~i~v~NKiD~~~~~~  321 (411)
T COG2262         267 EE-VKEADLLLHVVDASDPEILEKLEA-VEDVLAEI-GADEIPIILVLNKIDLLEDEE  321 (411)
T ss_pred             HH-hhcCCEEEEEeecCChhHHHHHHH-HHHHHHHc-CCCCCCEEEEEecccccCchh
Confidence            22 457999999999999976666666 66666665 556699999999999875554

>CHL00071 tufA elongation factor Tu

Probab=99.65  E-value=2.5e-15  Score=113.89  Aligned_cols=121  Identities=17%  Similarity=0.098  Sum_probs=83.0

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC---------------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF---------------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF   74 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (154)
                      ....++|+++|.+++|||||+++|++..-               .......|.+.......+..+...+.+.||||+..|
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~   88 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence            45669999999999999999999986421               011112344555444445445567889999999887


Q ss_pred             cccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCc-EEEEEeCCCCCCchh
Q 031704           75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKVCPWR  136 (154)
Q Consensus        75 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl~~~~~  136 (154)
                      .......+..+|++++|+|+...-. ..... ....+..    .+.| ++++.||+|+.++.+
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~-~~~~~~~----~g~~~iIvvvNK~D~~~~~~  145 (409)
T CHL00071         89 VKNMITGAAQMDGAILVVSAADGPM-PQTKE-HILLAKQ----VGVPNIVVFLNKEDQVDDEE  145 (409)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCc-HHHHH-HHHHHHH----cCCCEEEEEEEccCCCCHHH
Confidence            7767777889999999999886432 22222 2233332    2567 778999999976443

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.64  E-value=9.3e-16  Score=107.29  Aligned_cols=114  Identities=18%  Similarity=0.117  Sum_probs=74.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC------------------------------CCCCCcceeeeEEEEEEECCeEEEEE
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF------------------------------EELSPTIGVDFKIKHVALGGKKMKLA   64 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~   64 (154)
                      +|+++|+.++|||||+.+|+...-                              .......+.+.......+......+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            589999999999999999863211                              00011223344444444444567899


Q ss_pred             EEeCCCcccccccccccccCccEEEEEEECCCcch------HHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           65 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT------FTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        65 i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                      +|||||+..+.......++.+|++++|+|+++...      .......| .....   ....|+++++||+|+.
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~iiivvNK~Dl~  150 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART---LGVKQLIVAVNKMDDV  150 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH---cCCCeEEEEEEccccc
Confidence            99999998777666667788999999999988421      11112212 12222   1236899999999997

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.64  E-value=2.5e-15  Score=100.01  Aligned_cols=112  Identities=23%  Similarity=0.285  Sum_probs=73.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----------cccccccccc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----------FRTLTSSYYR   83 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~   83 (154)
                      .|+++|.+|+|||||++.+.++.. ....++.+.+.....+..++   .+.+|||||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            378999999999999999996555 55555555555544444443   788999999432          2333333343


Q ss_pred             ---CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           84 ---GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        84 ---~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                         ..+++++++|..+..+.....  ..+.+...    ..|+++|+||+|+....
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~--~~~~l~~~----~~~vi~v~nK~D~~~~~  126 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLE--MLDWLEEL----GIPFLVVLTKADKLKKS  126 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHH--HHHHHHHc----CCCEEEEEEchhcCChH
Confidence               357889999987653322211  12223222    47899999999996443

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.64  E-value=3e-15  Score=119.93  Aligned_cols=119  Identities=18%  Similarity=0.171  Sum_probs=82.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-----CCCC------------cceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE-----ELSP------------TIGVDFKIKHVALGGKKMKLAIWDTAGQER   73 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~-----~~~~------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   73 (154)
                      +...+|+++|.+++|||||+++|+...-.     ....            ..+++.......+.....++.+|||||+.+
T Consensus         8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   87 (689)
T TIGR00484         8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD   87 (689)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence            45679999999999999999999742210     0000            123333333333333456889999999988


Q ss_pred             ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        74 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      +.......++.+|++++|+|+.+....... ..|. .+..    .+.|+++++||+|+..+.
T Consensus        88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~-~~~~----~~~p~ivviNK~D~~~~~  143 (689)
T TIGR00484        88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWR-QANR----YEVPRIAFVNKMDKTGAN  143 (689)
T ss_pred             hhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHH-HHHH----cCCCEEEEEECCCCCCCC
Confidence            877778889999999999999886544332 2132 3332    367899999999998654

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.63  E-value=2e-15  Score=114.29  Aligned_cols=120  Identities=15%  Similarity=0.127  Sum_probs=75.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCcceeeeEEEE----------------EEE----CC------eEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEEL--SPTIGVDFKIKH----------------VAL----GG------KKMKL   63 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~--~~~~~~~~~~~~----------------~~~----~~------~~~~~   63 (154)
                      ..++|+++|..++|||||+++|.+......  ....+.+.....                +..    ++      ....+
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV   82 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence            468999999999999999999975422110  001111111110                000    11      13578


Q ss_pred             EEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           64 AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        64 ~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      .+||+||+++|...+......+|++++|+|+++......... ....+...   ...|+++++||+|+.++.
T Consensus        83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e-~l~~l~~~---gi~~iIVvvNK~Dl~~~~  150 (406)
T TIGR03680        83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKE-HLMALEII---GIKNIVIVQNKIDLVSKE  150 (406)
T ss_pred             EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHH-HHHHHHHc---CCCeEEEEEEccccCCHH
Confidence            999999999998877777888999999999986431112222 11222222   224689999999997654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.63  E-value=7e-15  Score=111.05  Aligned_cols=120  Identities=17%  Similarity=0.108  Sum_probs=81.6

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcC-------CCC--------CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSD-------TFE--------ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER   73 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~-------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   73 (154)
                      .....++|+++|.+++|||||+++|++.       ++.        ......|.|.......+......+.++||||+.+
T Consensus         8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~   87 (396)
T PRK12735          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence            3356699999999999999999999862       110        1112345555555555555556789999999988


Q ss_pred             ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEE-EEEeCCCCCCc
Q 031704           74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL-LVGNKVDKVCP  134 (154)
Q Consensus        74 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~i-vv~nK~Dl~~~  134 (154)
                      |.......+..+|++++|+|+.+... ..... +...+..    .++|.+ ++.||+|+.+.
T Consensus        88 f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e-~l~~~~~----~gi~~iivvvNK~Dl~~~  143 (396)
T PRK12735         88 YVKNMITGAAQMDGAILVVSAADGPM-PQTRE-HILLARQ----VGVPYIVVFLNKCDMVDD  143 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCc-hhHHH-HHHHHHH----cCCCeEEEEEEecCCcch
Confidence            87666677888999999999987432 22222 2223332    356655 67999999743

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.63  E-value=4.4e-15  Score=116.57  Aligned_cols=112  Identities=22%  Similarity=0.269  Sum_probs=76.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-----cceeeeEEEEEE--ECCeEE----------EEEEEeCCCcccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-----TIGVDFKIKHVA--LGGKKM----------KLAIWDTAGQERF   74 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~----------~~~i~D~~g~~~~   74 (154)
                      +.+.|+++|++++|||||++++.+.......+     +.|.++......  ..+..+          .+.+|||||++.|
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            45689999999999999999998765432222     222111111100  001111          2689999999999


Q ss_pred             cccccccccCccEEEEEEECCC---cchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           75 RTLTSSYYRGAQGIIMVYDVTR---RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        75 ~~~~~~~~~~~~~~v~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                      ..++...++.+|++++|+|+++   +++++.+.     .+.    ..+.|+++++||+|+.
T Consensus        85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~----~~~vpiIvviNK~D~~  136 (586)
T PRK04004         85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILK----RRKTPFVVAANKIDRI  136 (586)
T ss_pred             HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHH----HcCCCEEEEEECcCCc
Confidence            9888888889999999999987   44443332     222    2367899999999985

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.62  E-value=3.6e-15  Score=114.72  Aligned_cols=121  Identities=21%  Similarity=0.147  Sum_probs=79.3

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC--CC------------CC------------------CcceeeeEEEEEEEC
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EE------------LS------------------PTIGVDFKIKHVALG   57 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~--~~------------~~------------------~~~~~~~~~~~~~~~   57 (154)
                      ....++|+++|+.++|||||+++|+...-  ..            ..                  ...|++.......+.
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            35669999999999999999999975422  00            00                  012334444444444


Q ss_pred             CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           58 GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      .....+.++||||++.|.......+..+|++++|+|+...-.-..... +. .+... .  ..++++++||+|+.+.+
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~-~~-l~~~l-g--~~~iIvvvNKiD~~~~~  176 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH-SF-IATLL-G--IKHLVVAVNKMDLVDYS  176 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH-HH-HHHHh-C--CCceEEEEEeeccccch
Confidence            455678999999998886666666789999999999876432111111 11 22222 1  24789999999997543

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.62  E-value=1.1e-14  Score=105.29  Aligned_cols=130  Identities=17%  Similarity=0.123  Sum_probs=75.9

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcce--eeeEEEEEEECCeEEEEEEEeCCCccccccc-------ccc
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIG--VDFKIKHVALGGKKMKLAIWDTAGQERFRTL-------TSS   80 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~   80 (154)
                      ....++|+++|.+|+||||++|++++.+........+  .+........+  ...+.++||||..+....       ...
T Consensus        35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik~  112 (313)
T TIGR00991        35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIKR  112 (313)
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence            3567899999999999999999999887532222222  22222222233  457899999996543211       111


Q ss_pred             cc--cCccEEEEEEECCCcchHHHHHHHHHHHHhhhc-CCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           81 YY--RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        81 ~~--~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      ++  ...|++++|..++... +........+.+.... ...-.+.|||.|++|...++..+.+++
T Consensus       113 ~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~f  176 (313)
T TIGR00991       113 FLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDF  176 (313)
T ss_pred             HhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHH
Confidence            11  2589999996655321 2222111333333332 223357899999999875544444333

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.62  E-value=1e-14  Score=104.78  Aligned_cols=124  Identities=20%  Similarity=0.194  Sum_probs=87.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc-----cccccc---cccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE-----RFRTLT---SSYY   82 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~---~~~~   82 (154)
                      ..+.|+|.|.||+|||||++.+.+.+. ...+|.++-..+..++..+  ...++++||||--     +.+.+-   ..++
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~--~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERG--YLRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecC--CceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            457899999999999999999999988 6777877766666666544  4467888999921     112111   1122


Q ss_pred             c-CccEEEEEEECCC--cchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704           83 R-GAQGIIMVYDVTR--RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG  141 (154)
Q Consensus        83 ~-~~~~~v~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~  141 (154)
                      + -.++++|++|.+.  .-+.+.... +++.+...   -+.|+++|.||.|+.+++.+...+
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~-L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~  302 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQIS-LLEEIKEL---FKAPIVVVINKIDIADEEKLEEIE  302 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHHHH-HHHHHHHh---cCCCeEEEEecccccchhHHHHHH
Confidence            2 2588999999874  556677666 44455543   238999999999998777665443

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.61  E-value=8.9e-15  Score=107.11  Aligned_cols=81  Identities=23%  Similarity=0.283  Sum_probs=55.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEE---------------------CC-eEEEEEEEeCCCc-
Q 031704           16 LLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVAL---------------------GG-KKMKLAIWDTAGQ-   71 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~i~D~~g~-   71 (154)
                      |+++|.+++|||||+|++++... ...+|.++.+.......+                     ++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            57899999999999999998876 333344333222222221                     22 3468999999996 


Q ss_pred             ---ccccccccc---cccCccEEEEEEECCC
Q 031704           72 ---ERFRTLTSS---YYRGAQGIIMVYDVTR   96 (154)
Q Consensus        72 ---~~~~~~~~~---~~~~~~~~v~v~d~~~   96 (154)
                         +....+...   .++++|++++|+|++.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~  111 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG  111 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence               334443333   4899999999999973

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=1.7e-15  Score=96.66  Aligned_cols=118  Identities=25%  Similarity=0.394  Sum_probs=98.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      ++..+|+++|..|+||||++.++.-++.....|+.+.+.....    .+..++.+||..|+...+..|+.++.+.|++++
T Consensus        16 e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~----yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   16 EREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVP----YKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             ccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccc----cccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            3678999999999999999999999888778888886554333    366789999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      |.|.+|.+........+...+.+- +..+.-+++++||.|...
T Consensus        92 VVDssd~dris~a~~el~~mL~E~-eLq~a~llv~anKqD~~~  133 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVELYSMLQEE-ELQHAKLLVFANKQDYSG  133 (182)
T ss_pred             EEeccchhhhhhhHHHHHHHhccH-hhcCceEEEEeccccchh
Confidence            999999988877766566666554 444577899999999853

>PRK12736 elongation factor Tu; Reviewed

Probab=99.59  E-value=1.5e-14  Score=109.26  Aligned_cols=120  Identities=19%  Similarity=0.097  Sum_probs=82.6

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-------C--------CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-------E--------ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF   74 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-------~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (154)
                      ....++|+++|+.++|||||+++|++...       .        ......|.|.......+......+.++||||+++|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            44569999999999999999999986311       0        11113455555555556555567889999999888


Q ss_pred             cccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCc-EEEEEeCCCCCCch
Q 031704           75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKVCPW  135 (154)
Q Consensus        75 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl~~~~  135 (154)
                      .......+..+|++++|+|+.....-. ... +...+...    +.| +++++||+|+.++.
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~-~~~~~~~~----g~~~~IvviNK~D~~~~~  144 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPMPQ-TRE-HILLARQV----GVPYLVVFLNKVDLVDDE  144 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchh-HHH-HHHHHHHc----CCCEEEEEEEecCCcchH
Confidence            766666678899999999988643222 222 22233322    566 67899999997543

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.59  E-value=6.9e-15  Score=111.36  Aligned_cols=117  Identities=21%  Similarity=0.151  Sum_probs=76.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC--CC------------------------------CCCcceeeeEEEEEEECCeEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF--EE------------------------------LSPTIGVDFKIKHVALGGKKM   61 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~--~~------------------------------~~~~~~~~~~~~~~~~~~~~~   61 (154)
                      +||+++|+.++|||||+++|+...-  ..                              .....+.+.......+.....
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            4899999999999999999974321  00                              001123334444444444456


Q ss_pred             EEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        62 ~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ++.++||||++.|.......+..+|++++|+|+.....-..... |. .+...   ...++++++||+|+.+..
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~-~~-~~~~~---~~~~iivviNK~D~~~~~  149 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRH-SY-IASLL---GIRHVVLAVNKMDLVDYD  149 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHH-HH-HHHHc---CCCcEEEEEEecccccch
Confidence            88999999999887666667889999999999876432221111 22 22222   124689999999997543

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.59  E-value=1.6e-17  Score=110.13  Aligned_cols=128  Identities=37%  Similarity=0.641  Sum_probs=107.5

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCe-EEEEEEEeCCCcccccccccccccCccE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK-KMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (154)
                      ....+|+.|+|..++|||+++.+++-..+ ..+..+.+..+..+....+.. .+.+.+||..|++++..+..-+++.+++
T Consensus        22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~  101 (229)
T KOG4423|consen   22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG  101 (229)
T ss_pred             hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence            45678999999999999999999998877 566677887777777666654 4578999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhh---cCCCCCcEEEEEeCCCCCCchhhh
Q 031704           88 IIMVYDVTRRDTFTNLADIWAKEIDLY---STNQDCIKLLVGNKVDKVCPWRLF  138 (154)
Q Consensus        88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~~ivv~nK~Dl~~~~~~~  138 (154)
                      ..+|||+++..+|+.... |.+.+...   +...+.|+++.+||||.......+
T Consensus       102 ~~iVfdvt~s~tfe~~sk-wkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~  154 (229)
T KOG4423|consen  102 AFIVFDVTRSLTFEPVSK-WKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNE  154 (229)
T ss_pred             eEEEEEccccccccHHHH-HHHhccCcccCCCCCcchheeccchhccChHhhhh
Confidence            999999999999999988 99877543   334567999999999997655444

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.59  E-value=1.2e-14  Score=99.97  Aligned_cols=117  Identities=15%  Similarity=0.137  Sum_probs=70.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceee--eEEEEEEECCeEEEEEEEeCCCcccccc--------c---cc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVD--FKIKHVALGGKKMKLAIWDTAGQERFRT--------L---TS   79 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~---~~   79 (154)
                      ++|+++|.+|+||||++|.+++.+.. ......+.|  ........++  ..+.++||||-.+...        +   ..
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            37999999999999999999988752 221111222  2222233333  4688899999543221        1   11


Q ss_pred             ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcC-CCCCcEEEEEeCCCCCCch
Q 031704           80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        80 ~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ....+.|++++|+++.+ -+-+. .. ..+.++...+ ..-.++++|.|++|...+.
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d-~~-~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~  132 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEE-EQ-AVETLQELFGEKVLDHTIVLFTRGDDLEGG  132 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHH-HH-HHHHHHHHhChHhHhcEEEEEECccccCCC
Confidence            22456899999999887 22222 12 2333333212 2235789999999986543

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.59  E-value=7.5e-15  Score=111.25  Aligned_cols=121  Identities=18%  Similarity=0.185  Sum_probs=73.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEE----EE------------E----EC--C----eEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIK----HV------------A----LG--G----KKMKL   63 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~----~~------------~----~~--~----~~~~~   63 (154)
                      ..++|+++|+.++|||||+.+|.+.-..  ......+.+....    .+            .    .+  +    ....+
T Consensus         8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   87 (411)
T PRK04000          8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV   87 (411)
T ss_pred             CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence            4489999999999999999998653111  1111112222211    00            0    00  0    03578


Q ss_pred             EEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           64 AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        64 ~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      .+|||||++.+..........+|++++|+|++++.........+ ..+...   ...|+++|+||+|+.++..
T Consensus        88 ~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~~l~~~---~i~~iiVVlNK~Dl~~~~~  156 (411)
T PRK04000         88 SFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-MALDII---GIKNIVIVQNKIDLVSKER  156 (411)
T ss_pred             EEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-HHHHHc---CCCcEEEEEEeeccccchh
Confidence            99999999888766555566789999999999643111111111 122221   2246899999999976543

>PLN03126 Elongation factor Tu; Provisional

Probab=99.59  E-value=1.2e-14  Score=111.60  Aligned_cols=120  Identities=16%  Similarity=0.066  Sum_probs=83.3

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC---------------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF---------------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF   74 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (154)
                      ....++|+++|..++|||||+++|+....               .......+.+.......+..+...+.++|+||++.|
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f  157 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY  157 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence            45579999999999999999999985211               011222344554444445445567899999999988


Q ss_pred             cccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCc-EEEEEeCCCCCCch
Q 031704           75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKVCPW  135 (154)
Q Consensus        75 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl~~~~  135 (154)
                      -......+..+|++++|+|+.+...- ...+ +...+...    ++| ++++.||+|+.+..
T Consensus       158 ~~~~~~g~~~aD~ailVVda~~G~~~-qt~e-~~~~~~~~----gi~~iIvvvNK~Dl~~~~  213 (478)
T PLN03126        158 VKNMITGAAQMDGAILVVSGADGPMP-QTKE-HILLAKQV----GVPNMVVFLNKQDQVDDE  213 (478)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcH-HHHH-HHHHHHHc----CCCeEEEEEecccccCHH
Confidence            77777778899999999998875432 2233 23333332    566 78899999997643

>PRK12739 elongation factor G; Reviewed

Probab=99.59  E-value=1.8e-14  Score=115.55  Aligned_cols=120  Identities=17%  Similarity=0.151  Sum_probs=81.3

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC--C---CCC------------CcceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF--E---ELS------------PTIGVDFKIKHVALGGKKMKLAIWDTAGQE   72 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~--~---~~~------------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   72 (154)
                      .++..+|+++|..++|||||+++|+...-  .   ...            ...+++.......+.-....++++||||+.
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~   84 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV   84 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence            34678999999999999999999975311  0   000            122333333333332244578999999998


Q ss_pred             cccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        73 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      .+...+...++.+|++++|+|+.+....... . ....+.    ..+.|++++.||+|+..+.
T Consensus        85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~-i~~~~~----~~~~p~iv~iNK~D~~~~~  141 (691)
T PRK12739         85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-T-VWRQAD----KYGVPRIVFVNKMDRIGAD  141 (691)
T ss_pred             HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECCCCCCCC
Confidence            8877788889999999999999875432222 2 222232    2367899999999998543

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.58  E-value=2.9e-14  Score=101.29  Aligned_cols=126  Identities=19%  Similarity=0.179  Sum_probs=74.2

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc--c-c-------c
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR--T-L-------T   78 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~-~-------~   78 (154)
                      .....++|+++|.+|+|||||+|++++..........+.+.....+........+.++||||-....  . .       .
T Consensus        27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I  106 (249)
T cd01853          27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI  106 (249)
T ss_pred             hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence            4456699999999999999999999998763332222222222222222223568999999954331  0 0       1


Q ss_pred             ccccc--CccEEEEEEECCCcchHHHHHHHHHHHHhhhcC-CCCCcEEEEEeCCCCCCch
Q 031704           79 SSYYR--GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        79 ~~~~~--~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ..++.  ..|+++++..++... ++.......+.+....+ .--.++++|.||+|...+.
T Consensus       107 ~~~l~~~~idvIL~V~rlD~~r-~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~  165 (249)
T cd01853         107 KRYLKKKTPDVVLYVDRLDMYR-RDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD  165 (249)
T ss_pred             HHHHhccCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence            22232  468888887666432 22221113334443222 2224799999999986544

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.58  E-value=1.2e-14  Score=115.54  Aligned_cols=118  Identities=20%  Similarity=0.158  Sum_probs=76.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC--------------C------------------CcceeeeEEEEEEECC
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEEL--------------S------------------PTIGVDFKIKHVALGG   58 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~--------------~------------------~~~~~~~~~~~~~~~~   58 (154)
                      ...++|+++|++++|||||+++|+...-...              .                  ...|.+.......+..
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~  101 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT  101 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence            4558999999999999999999986432100              0                  0112233333333333


Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      ...++.++||||++.+.......+..+|++++|+|+.....-..... + ..+...   ...+++|++||+|+.+
T Consensus       102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~-~~~~~~---~~~~iivvvNK~D~~~  171 (632)
T PRK05506        102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-S-FIASLL---GIRHVVLAVNKMDLVD  171 (632)
T ss_pred             CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-H-HHHHHh---CCCeEEEEEEeccccc
Confidence            44578899999998876656666889999999999976432211111 1 122222   2357889999999974

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.57  E-value=1.2e-14  Score=94.13  Aligned_cols=118  Identities=18%  Similarity=0.176  Sum_probs=77.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----ccccccccccCccEEEE
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----FRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~~~~~~v~   90 (154)
                      ||+++|+.|||||||+++|.+... .+..+..+.+       .+     .++||||..-    +.........++|.+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~-------~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l   69 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEY-------YD-----NTIDTPGEYIENPRFYHALIVTAQDADVVLL   69 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC-CcCccceeEe-------cc-----cEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence            899999999999999999998765 3333322211       11     3479999532    22222223457999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC-Cchhhhh--hhhhhhhhccccccC
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV-CPWRLFL--SGFWHFLLSKFYCSS  154 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~-~~~~~~~--~~~~~~~~~~~~~~S  154 (154)
                      +.|++++.+.-.      ..+.   ..-+.|+|-|.||+|+. ++.++..  ..+..-|+.+++++|
T Consensus        70 l~dat~~~~~~p------P~fa---~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS  127 (143)
T PF10662_consen   70 LQDATEPRSVFP------PGFA---SMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVS  127 (143)
T ss_pred             EecCCCCCccCC------chhh---cccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEE
Confidence            999998764311      1211   12357899999999998 3334433  445556777777776

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.56  E-value=2.9e-14  Score=114.70  Aligned_cols=117  Identities=19%  Similarity=0.222  Sum_probs=80.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC---------------CCCC----CCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSD---------------TFEE----LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ   71 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~---------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (154)
                      ....||+++|+.++|||||+++|+..               ++..    ...+.........+.+.+..+.+++|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            45689999999999999999999753               1111    1112222222223345667789999999999


Q ss_pred             ccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        72 ~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      ..|.......++.+|++++|+|+.+.-..+.. ..|.. .    ...+.|+++++||+|...
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~-~----~~~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQ-A----LKENVKPVLFINKVDRLI  152 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHH-H----HHcCCCEEEEEEChhccc
Confidence            98887788889999999999998874322221 21222 1    123567889999999864

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.56  E-value=6.5e-14  Score=110.58  Aligned_cols=115  Identities=17%  Similarity=0.142  Sum_probs=74.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEE--EEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIK--HVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      -|+++|..++|||||+++|.+....  ......|.|....  .+...+ ...+.+|||||++.|.......+..+|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            3789999999999999999864321  1111123333332  222222 2357899999999987777777889999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCc-EEEEEeCCCCCCchh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKVCPWR  136 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl~~~~~  136 (154)
                      |+|+++.-. ....+ ....+...    +.| +++|+||+|+.++..
T Consensus        81 VVda~eg~~-~qT~e-hl~il~~l----gi~~iIVVlNKiDlv~~~~  121 (614)
T PRK10512         81 VVACDDGVM-AQTRE-HLAILQLT----GNPMLTVALTKADRVDEAR  121 (614)
T ss_pred             EEECCCCCc-HHHHH-HHHHHHHc----CCCeEEEEEECCccCCHHH
Confidence            999887422 11122 22233322    344 689999999976543

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.56  E-value=2.2e-14  Score=111.55  Aligned_cols=129  Identities=20%  Similarity=0.189  Sum_probs=85.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--cC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT------LTSSYY--RG   84 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~   84 (154)
                      .+++++|+||+|||||+|++++.+- ...+|.  .|...++..+..+...+++.|+||.-....      ..++++  .+
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpG--vTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~   81 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPG--VTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK   81 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhccCceecCCCC--eeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence            5799999999999999999999875 344444  445555544444444588899999433222      223333  35


Q ss_pred             ccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch--hhhhhhhhhhhhccccc
Q 031704           85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW--RLFLSGFWHFLLSKFYC  152 (154)
Q Consensus        85 ~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~  152 (154)
                      .|+++.|.|+++.+..-.+.-    ++.+.    +.|++++.|++|+..++  +++.+.+.+...-.++|
T Consensus        82 ~D~ivnVvDAtnLeRnLyltl----QLlE~----g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~  143 (653)
T COG0370          82 PDLIVNVVDATNLERNLYLTL----QLLEL----GIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVP  143 (653)
T ss_pred             CCEEEEEcccchHHHHHHHHH----HHHHc----CCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEE
Confidence            699999999999775544433    44443    77899999999996554  33445554444333344

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.55  E-value=5.5e-14  Score=98.57  Aligned_cols=114  Identities=17%  Similarity=0.102  Sum_probs=73.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCc-------------ceeeeEE--------------------------EEEE
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPT-------------IGVDFKI--------------------------KHVA   55 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~-------------~~~~~~~--------------------------~~~~   55 (154)
                      ||+++|+.++|||||++++..+.+......             .|.+...                          ....
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            689999999999999999987655211100             1111000                          0111


Q ss_pred             ECCeEEEEEEEeCCCccccccccccccc--CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           56 LGGKKMKLAIWDTAGQERFRTLTSSYYR--GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        56 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~--~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                        .....+.++||||++.+.......+.  .+|++++|+|+.....- .... +...+..    .++|+++|.||+|+..
T Consensus        81 --~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~-~l~~l~~----~~ip~ivvvNK~D~~~  152 (224)
T cd04165          81 --KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKE-HLGLALA----LNIPVFVVVTKIDLAP  152 (224)
T ss_pred             --eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHH-HHHHHHH----cCCCEEEEEECccccC
Confidence              12346889999999888665555453  68999999998765432 2222 3334443    3678999999999975


Q ss_pred             chh
Q 031704          134 PWR  136 (154)
Q Consensus       134 ~~~  136 (154)
                      +.+
T Consensus       153 ~~~  155 (224)
T cd04165         153 ANI  155 (224)
T ss_pred             HHH
Confidence            543

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PLN03127 Elongation factor Tu; Provisional

Probab=99.55  E-value=8e-14  Score=106.50  Aligned_cols=120  Identities=18%  Similarity=0.077  Sum_probs=81.3

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcC------CC---------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSD------TF---------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF   74 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (154)
                      ....++|+++|..++|||||+++|.+.      ..         .......|.|.......+.....++.++||||+..|
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f  137 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY  137 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence            446689999999999999999999732      10         011122445555555556555667899999999887


Q ss_pred             cccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCc-EEEEEeCCCCCCch
Q 031704           75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKVCPW  135 (154)
Q Consensus        75 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl~~~~  135 (154)
                      -......+..+|++++|+|+.+...- ...+ ....+..    .+.| ++++.||+|+.++.
T Consensus       138 ~~~~~~g~~~aD~allVVda~~g~~~-qt~e-~l~~~~~----~gip~iIvviNKiDlv~~~  193 (447)
T PLN03127        138 VKNMITGAAQMDGGILVVSAPDGPMP-QTKE-HILLARQ----VGVPSLVVFLNKVDVVDDE  193 (447)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCch-hHHH-HHHHHHH----cCCCeEEEEEEeeccCCHH
Confidence            66665666789999999998764322 1222 2223333    3567 57899999997543

>PRK00007 elongation factor G; Reviewed

Probab=99.55  E-value=7.6e-14  Score=111.91  Aligned_cols=120  Identities=17%  Similarity=0.165  Sum_probs=80.1

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC--CC---CC------------CcceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EE---LS------------PTIGVDFKIKHVALGGKKMKLAIWDTAGQE   72 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~--~~---~~------------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   72 (154)
                      .++..+|+++|.+++|||||+++|+...-  ..   ..            ...+++.......+.-....++++||||+.
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~   86 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV   86 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence            44578999999999999999999973211  00   00            122333333333332234578899999998


Q ss_pred             cccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        73 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      .+.......++.+|++++|+|+...-....... |. .+..    .+.|++++.||+|+..+.
T Consensus        87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~-~~-~~~~----~~~p~iv~vNK~D~~~~~  143 (693)
T PRK00007         87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETV-WR-QADK----YKVPRIAFVNKMDRTGAD  143 (693)
T ss_pred             HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHH-HH-HHHH----cCCCEEEEEECCCCCCCC
Confidence            777667777889999999999876543332221 32 2332    367889999999997544

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.54  E-value=2e-13  Score=102.79  Aligned_cols=82  Identities=24%  Similarity=0.267  Sum_probs=56.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEE---------------------C-CeEEEEEEEeCCC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVAL---------------------G-GKKMKLAIWDTAG   70 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~i~D~~g   70 (154)
                      ++|.++|.+++|||||+|+|.+.+. ...++..+.+.......+                     + .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            5899999999999999999998877 333444443333322221                     1 1236789999999


Q ss_pred             cc----cccccc---cccccCccEEEEEEECC
Q 031704           71 QE----RFRTLT---SSYYRGAQGIIMVYDVT   95 (154)
Q Consensus        71 ~~----~~~~~~---~~~~~~~~~~v~v~d~~   95 (154)
                      ..    ....+.   ...++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            42    223332   33388999999999997

>PRK00049 elongation factor Tu; Reviewed

Probab=99.53  E-value=1.2e-13  Score=104.33  Aligned_cols=119  Identities=18%  Similarity=0.116  Sum_probs=81.8

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCCC---------------CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE---------------ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF   74 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (154)
                      ....++|+++|..++|||||+++|++....               ......+.|.......+..+...+.++||||+.+|
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f   88 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence            356699999999999999999999863110               01113445555555555445567889999999887


Q ss_pred             cccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEE-EEEeCCCCCCc
Q 031704           75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL-LVGNKVDKVCP  134 (154)
Q Consensus        75 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~i-vv~nK~Dl~~~  134 (154)
                      .......+..+|++++|+|+..... ..... +...+...    +.|.+ ++.||+|+.+.
T Consensus        89 ~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~-~~~~~~~~----g~p~iiVvvNK~D~~~~  143 (396)
T PRK00049         89 VKNMITGAAQMDGAILVVSAADGPM-PQTRE-HILLARQV----GVPYIVVFLNKCDMVDD  143 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCc-hHHHH-HHHHHHHc----CCCEEEEEEeecCCcch
Confidence            7666677889999999999887432 22222 22333332    56765 68999999753

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.53  E-value=1.1e-13  Score=100.09  Aligned_cols=118  Identities=18%  Similarity=0.152  Sum_probs=85.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-------ccccccccccCccE
Q 031704           16 LLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-------FRTLTSSYYRGAQG   87 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~~~   87 (154)
                      |-++|-|++|||||++.+...+. ...+|.++.......+... ..-.+.+-|.||.-+       .-....+++.++.+
T Consensus       162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v  240 (369)
T COG0536         162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV  240 (369)
T ss_pred             cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence            45699999999999999999887 6777887777777777663 333688899999322       22235556778999


Q ss_pred             EEEEEECCCcch---HHHHHHHHHHHHhhh-cCCCCCcEEEEEeCCCCCCch
Q 031704           88 IIMVYDVTRRDT---FTNLADIWAKEIDLY-STNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        88 ~v~v~d~~~~~s---~~~~~~~~~~~~~~~-~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      +++|+|++..+.   .++... ...++..+ ....+.|.+||+||+|+...+
T Consensus       241 L~hviD~s~~~~~dp~~~~~~-i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~  291 (369)
T COG0536         241 LLHVIDLSPIDGRDPIEDYQT-IRNELEKYSPKLAEKPRIVVLNKIDLPLDE  291 (369)
T ss_pred             eEEEEecCcccCCCHHHHHHH-HHHHHHHhhHHhccCceEEEEeccCCCcCH
Confidence            999999986553   444444 44455554 334578999999999965443

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=3.1e-14  Score=105.70  Aligned_cols=124  Identities=19%  Similarity=0.164  Sum_probs=97.0

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhc--CC-------------------CCCCCCcceeeeEEEEEEECCeEEEEEEEeC
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTS--DT-------------------FEELSPTIGVDFKIKHVALGGKKMKLAIWDT   68 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~--~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~   68 (154)
                      -.++-.++|+-.|.+|||||...|+-  +.                   +-......|+...+..++++.....+++.||
T Consensus         9 v~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDT   88 (528)
T COG4108           9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDT   88 (528)
T ss_pred             HhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCC
Confidence            34567899999999999999999862  11                   1122245678888889999988999999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704           69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        69 ~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      |||++|++-..+-+..+|++|+|+|+...-.-..+      .+-+.|...++||+-+.||.|.....+.++
T Consensus        89 PGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~------KLfeVcrlR~iPI~TFiNKlDR~~rdP~EL  153 (528)
T COG4108          89 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL------KLFEVCRLRDIPIFTFINKLDREGRDPLEL  153 (528)
T ss_pred             CCccccchhHHHHHHhhheeeEEEecccCccHHHH------HHHHHHhhcCCceEEEeeccccccCChHHH
Confidence            99999999998889999999999999875432221      333345667999999999999987777655

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.50  E-value=3.8e-13  Score=102.89  Aligned_cols=116  Identities=18%  Similarity=0.120  Sum_probs=80.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC--C----------------------------CCCCcceeeeEEEEEEECCeE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF--E----------------------------ELSPTIGVDFKIKHVALGGKK   60 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~~   60 (154)
                      ...++|+++|+.++|||||+.+|+...-  .                            ......+.+.......+....
T Consensus         5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~   84 (446)
T PTZ00141          5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (446)
T ss_pred             CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence            3558999999999999999999875210  0                            001123445555555566667


Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCCcch---H---HHHHHHHHHHHhhhcCCCCC-cEEEEEeCCCC
Q 031704           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT---F---TNLADIWAKEIDLYSTNQDC-IKLLVGNKVDK  131 (154)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~-~~ivv~nK~Dl  131 (154)
                      ..++++|+||+.+|.......+..+|++++|+|+.....   +   ......|. .+..    .++ +++++.||+|.
T Consensus        85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~----~gi~~iiv~vNKmD~  157 (446)
T PTZ00141         85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFT----LGVKQMIVCINKMDD  157 (446)
T ss_pred             eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHH----cCCCeEEEEEEcccc
Confidence            789999999999998888888899999999999987431   0   12223122 2222    244 47899999995

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.49  E-value=4.6e-13  Score=102.42  Aligned_cols=115  Identities=17%  Similarity=0.136  Sum_probs=81.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC------------------------------CCCCCcceeeeEEEEEEECCeEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF------------------------------EELSPTIGVDFKIKHVALGGKKM   61 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~   61 (154)
                      ..++|+++|+.++|||||+.+|+...-                              .......+.+.......+.....
T Consensus         6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~   85 (447)
T PLN00043          6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY   85 (447)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence            458999999999999999999874211                              00011234555555566666777


Q ss_pred             EEEEEeCCCcccccccccccccCccEEEEEEECCCcchHH-------HHHHHHHHHHhhhcCCCCC-cEEEEEeCCCCC
Q 031704           62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFT-------NLADIWAKEIDLYSTNQDC-IKLLVGNKVDKV  132 (154)
Q Consensus        62 ~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~~-~~ivv~nK~Dl~  132 (154)
                      .++++|+||+++|.......++.+|++++|+|+++. .++       .... ....+..    .++ ++++++||+|+.
T Consensus        86 ~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~e-h~~~~~~----~gi~~iIV~vNKmD~~  158 (447)
T PLN00043         86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTRE-HALLAFT----LGVKQMICCCNKMDAT  158 (447)
T ss_pred             EEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHH-HHHHHHH----cCCCcEEEEEEcccCC
Confidence            899999999999998888889999999999999873 222       2223 1222222    245 578899999986

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=1.6e-13  Score=103.20  Aligned_cols=123  Identities=20%  Similarity=0.226  Sum_probs=84.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc-c--------ccccc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR-T--------LTSSY   81 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~--------~~~~~   81 (154)
                      +..++|+++|+||+|||||+|.|...+....+|..|.|-......++-..+.+.+.||+|--+-. .        .....
T Consensus       266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~  345 (531)
T KOG1191|consen  266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR  345 (531)
T ss_pred             hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence            34589999999999999999999999987777777777666666665566778889999943311 1        12334


Q ss_pred             ccCccEEEEEEEC--CCcchHHHHHHHHHHHHhhh-----cCCCCCcEEEEEeCCCCCCc
Q 031704           82 YRGAQGIIMVYDV--TRRDTFTNLADIWAKEIDLY-----STNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        82 ~~~~~~~v~v~d~--~~~~s~~~~~~~~~~~~~~~-----~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +.++|++++|+|+  ++.++...+.. ..+....-     ......+++++.||+|+...
T Consensus       346 ~~~advi~~vvda~~~~t~sd~~i~~-~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~  404 (531)
T KOG1191|consen  346 IERADVILLVVDAEESDTESDLKIAR-ILETEGVGLVVIVNKMEKQRIILVANKSDLVSK  404 (531)
T ss_pred             HhhcCEEEEEecccccccccchHHHH-HHHHhccceEEEeccccccceEEEechhhccCc
Confidence            6789999999999  44333333333 11111111     11134689999999999655

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.45  E-value=3.3e-13  Score=110.14  Aligned_cols=118  Identities=18%  Similarity=0.232  Sum_probs=81.2

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCCC------------CCC---CcceeeeEEE--EEEE--------------C
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE------------ELS---PTIGVDFKIK--HVAL--------------G   57 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~~------------~~~---~~~~~~~~~~--~~~~--------------~   57 (154)
                      ..+...+|+++|+.++|||||+++|+...-.            +..   ...+.+....  .+..              .
T Consensus        15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~   94 (843)
T PLN00116         15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD   94 (843)
T ss_pred             CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence            3456789999999999999999999854310            000   1112222221  1211              1


Q ss_pred             CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           58 GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                      +..+.++++||||+.+|.......++.+|++++|+|+...-..... ..|...     ...+.|++++.||+|+.
T Consensus        95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~-----~~~~~p~i~~iNK~D~~  163 (843)
T PLN00116         95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQA-----LGERIRPVLTVNKMDRC  163 (843)
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHH-----HHCCCCEEEEEECCccc
Confidence            2367889999999999988888889999999999999875443322 224333     23478999999999996

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.45  E-value=4.7e-13  Score=93.22  Aligned_cols=119  Identities=16%  Similarity=0.172  Sum_probs=66.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCC-C--cceeeeEEEEEEECCeEEEEEEEeCCCcccccc-------ccc----
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELS-P--TIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT-------LTS----   79 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~----   79 (154)
                      ++|+++|.+|+||||++|.+++....... .  ..+.........+++.  .+.++||||-.+...       ...    
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~--~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGR--QVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTE--EEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecce--EEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            58999999999999999999998872221 1  1122233333455554  577899999322111       111    


Q ss_pred             ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        80 ~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      ......|++++|+.+... +...... +......+...--..++||.|.+|...+..
T Consensus        79 ~~~~g~ha~llVi~~~r~-t~~~~~~-l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~  133 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGRF-TEEDREV-LELLQEIFGEEIWKHTIVVFTHADELEDDS  133 (212)
T ss_dssp             HTTT-ESEEEEEEETTB--SHHHHHH-HHHHHHHHCGGGGGGEEEEEEEGGGGTTTT
T ss_pred             hccCCCeEEEEEEecCcc-hHHHHHH-HHHHHHHccHHHHhHhhHHhhhcccccccc
Confidence            123468999999998832 2222211 222222232222347899999988765544

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PTZ00416 elongation factor 2; Provisional

Probab=99.44  E-value=4.1e-13  Score=109.45  Aligned_cols=117  Identities=19%  Similarity=0.209  Sum_probs=79.1

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCCC---------------CCCCcceeeeEEE--EEEEC--------CeEEEEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE---------------ELSPTIGVDFKIK--HVALG--------GKKMKLA   64 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~---------------~~~~~~~~~~~~~--~~~~~--------~~~~~~~   64 (154)
                      .+...+|+++|+.++|||||+++|+...-.               ......+++....  .+.+.        ++...++
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            345669999999999999999999863210               0001112222221  12222        2256799


Q ss_pred             EEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           65 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        65 i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                      ++||||+.+|.......++.+|++++|+|+...-.... ...|. .+.    ..+.|++++.||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~-~~~----~~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLR-QAL----QERIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHH-HHH----HcCCCEEEEEEChhhh
Confidence            99999999888778888999999999999887543332 23233 222    2357999999999996

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=1.8e-12  Score=95.95  Aligned_cols=129  Identities=19%  Similarity=0.121  Sum_probs=91.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC------------------------C------CCCCcceeeeEEEEEEECCeE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF------------------------E------ELSPTIGVDFKIKHVALGGKK   60 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~------------------------~------~~~~~~~~~~~~~~~~~~~~~   60 (154)
                      ...++++++|+..+|||||+-+|+.+.-                        +      ...-..|.|.......+..+.
T Consensus         5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k   84 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK   84 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence            3568999999999999999999874310                        0      001123567777777777788


Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCCcchH------HHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTF------TNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +.++++|+||+.+|-..+.....++|+.|+|+|+.+.+.-      ...++ ..-..+.   ..-..+||+.||.|+.+.
T Consensus        85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrE-H~~La~t---lGi~~lIVavNKMD~v~w  160 (428)
T COG5256          85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTRE-HAFLART---LGIKQLIVAVNKMDLVSW  160 (428)
T ss_pred             ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhH-HHHHHHh---cCCceEEEEEEccccccc
Confidence            8999999999988888888888999999999999876411      11122 1112221   123468999999999987


Q ss_pred             hhhhhhhhh
Q 031704          135 WRLFLSGFW  143 (154)
Q Consensus       135 ~~~~~~~~~  143 (154)
                      ++...+++.
T Consensus       161 de~rf~ei~  169 (428)
T COG5256         161 DEERFEEIV  169 (428)
T ss_pred             CHHHHHHHH
Confidence            776554443

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=9.3e-13  Score=89.52  Aligned_cols=119  Identities=20%  Similarity=0.263  Sum_probs=85.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc---CccEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR---GAQGIIM   90 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~~~~v~   90 (154)
                      -.++++|+.+||||+|+.+|..+.+........  .....+..++..  ++++|.|||.+.+.....++.   .+-++||
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSie--pn~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF  114 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIE--PNEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF  114 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCeeeeec--cceeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence            579999999999999999999987643332222  223333343333  678899999998887777766   6899999


Q ss_pred             EEECCC-cchHHHHHHHHHHHHhhhc-CCCCCcEEEEEeCCCCCCchh
Q 031704           91 VYDVTR-RDTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        91 v~d~~~-~~s~~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      |.|... ........++++..+.... .....|+.+..||.|+..++.
T Consensus       115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt  162 (238)
T KOG0090|consen  115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKT  162 (238)
T ss_pred             EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCc
Confidence            999764 3344566666666665532 355679999999999976553

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.41  E-value=3.7e-13  Score=94.92  Aligned_cols=119  Identities=26%  Similarity=0.391  Sum_probs=78.3

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCc-ceeeeEEE-EEEECCeEEEEEEEeCCCccc-------ccccccc
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPT-IGVDFKIK-HVALGGKKMKLAIWDTAGQER-------FRTLTSS   80 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~   80 (154)
                      ....++++++|.+|+||||++|+|+.+...+.... .+.+.... ..++++  -.+.+||+||-.+       +++....
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence            45679999999999999999999997655222211 11111111 122233  3678999999544       5666677


Q ss_pred             cccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        81 ~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      ++.+.|.++++++..++.--.+. .+|.+.+...   -+.+++++.|.+|...+
T Consensus       114 ~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~---~~~~~i~~VtQ~D~a~p  163 (296)
T COG3596         114 YLPKLDLVLWLIKADDRALGTDE-DFLRDVIILG---LDKRVLFVVTQADRAEP  163 (296)
T ss_pred             HhhhccEEEEeccCCCccccCCH-HHHHHHHHhc---cCceeEEEEehhhhhcc
Confidence            78889999999999886533222 2244444332   24789999999998544

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.41  E-value=8.3e-12  Score=89.90  Aligned_cols=85  Identities=27%  Similarity=0.208  Sum_probs=64.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----cc---cccccccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----FR---TLTSSYYR   83 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~---~~~~~~~~   83 (154)
                      ..-+++++|.|++|||||++.|.+.+. ...+++++.+.....+.+.+  ..+++.|+||.-.    -+   .......|
T Consensus        62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R  139 (365)
T COG1163          62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVAR  139 (365)
T ss_pred             CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeec
Confidence            345899999999999999999999887 66677776666666666554  5678889998321    11   23455689


Q ss_pred             CccEEEEEEECCCcc
Q 031704           84 GAQGIIMVYDVTRRD   98 (154)
Q Consensus        84 ~~~~~v~v~d~~~~~   98 (154)
                      .||.+++|+|+....
T Consensus       140 ~ADlIiiVld~~~~~  154 (365)
T COG1163         140 NADLIIIVLDVFEDP  154 (365)
T ss_pred             cCCEEEEEEecCCCh
Confidence            999999999998544

>PRK12740 elongation factor G; Reviewed

Probab=99.40  E-value=1.3e-12  Score=104.67  Aligned_cols=111  Identities=20%  Similarity=0.230  Sum_probs=75.2

Q ss_pred             EcCCCCCHHHHHHHHhcCCCC--------------CC---CCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccc
Q 031704           19 IGDSGVGKSTLLLSFTSDTFE--------------EL---SPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSY   81 (154)
Q Consensus        19 ~G~~~~GKstli~~l~~~~~~--------------~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~   81 (154)
                      +|+.++|||||+++|+...-.              +.   ....+++.......+....+.+++|||||+..+...+...
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            599999999999999643210              00   0012333333333333345789999999998887777788


Q ss_pred             ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ++.+|++++|+|+++......... |. .+.    ..+.|+++|+||+|+....
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~~~-~~-~~~----~~~~p~iiv~NK~D~~~~~  128 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTETV-WR-QAE----KYGVPRIIFVNKMDRAGAD  128 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHHHH-HH-HHH----HcCCCEEEEEECCCCCCCC
Confidence            899999999999988665443322 32 222    2367999999999997544

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.38  E-value=9.8e-12  Score=83.29  Aligned_cols=62  Identities=24%  Similarity=0.307  Sum_probs=42.1

Q ss_pred             EEEEeCCCccc----ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCC
Q 031704           63 LAIWDTAGQER----FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV  129 (154)
Q Consensus        63 ~~i~D~~g~~~----~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~  129 (154)
                      +.++||||-..    .......+++.+|++++|.++++..+...... |.+....    .....++|.||.
T Consensus       103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~-l~~~~~~----~~~~~i~V~nk~  168 (168)
T PF00350_consen  103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEF-LKQMLDP----DKSRTIFVLNKA  168 (168)
T ss_dssp             EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHH-HHHHHTT----TCSSEEEEEE-G
T ss_pred             eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHH-HHHHhcC----CCCeEEEEEcCC
Confidence            88999999532    33556777899999999999998555443333 4444433    344489999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PRK09866 hypothetical protein; Provisional

Probab=99.38  E-value=7.4e-12  Score=97.79  Aligned_cols=68  Identities=19%  Similarity=0.264  Sum_probs=45.5

Q ss_pred             EEEEEeCCCccc-----ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           62 KLAIWDTAGQER-----FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        62 ~~~i~D~~g~~~-----~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      .+.++||||-..     ........+..+|++++|+|.++..+..+. . ..+.+...  ....|+++|.||+|+.+
T Consensus       231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-e-Ilk~Lkk~--~K~~PVILVVNKIDl~d  303 (741)
T PRK09866        231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-E-VREAILAV--GQSVPLYVLVNKFDQQD  303 (741)
T ss_pred             CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-H-HHHHHHhc--CCCCCEEEEEEcccCCC
Confidence            378899999543     222344568899999999999875443321 1 33344432  22359999999999975

>cd00066 G-alpha G protein alpha subunit

Probab=99.38  E-value=4.2e-12  Score=93.35  Aligned_cols=75  Identities=17%  Similarity=0.218  Sum_probs=58.8

Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEECCCc----------chHHHHHHHHHHHHhhhcCCCCCcEEEEEeC
Q 031704           59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLADIWAKEIDLYSTNQDCIKLLVGNK  128 (154)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK  128 (154)
                      ..+.+.+||++|+...+..|..++.+++++++|+|+++.          ..+......|...+. ...-.+.|++|++||
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~-~~~~~~~pill~~NK  237 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICN-SRWFANTSIILFLNK  237 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHh-CccccCCCEEEEccC
Confidence            346789999999999999999999999999999999874          455555553444433 334467899999999


Q ss_pred             CCCCCc
Q 031704          129 VDKVCP  134 (154)
Q Consensus       129 ~Dl~~~  134 (154)
                      .|+..+
T Consensus       238 ~D~f~~  243 (317)
T cd00066         238 KDLFEE  243 (317)
T ss_pred             hHHHHH
Confidence            998643

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.37  E-value=8.7e-12  Score=93.35  Aligned_cols=85  Identities=25%  Similarity=0.268  Sum_probs=60.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeE---------------EEEEEEeCCCccc-
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK---------------MKLAIWDTAGQER-   73 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~-   73 (154)
                      ...++|.++|.|++|||||+|++.+.+. ...+|.++.......+.+.+..               ..+.++|+||-.. 
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            4568999999999999999999987766 3444666555555555544322               3489999999432 


Q ss_pred             ------ccccccccccCccEEEEEEECC
Q 031704           74 ------FRTLTSSYYRGAQGIIMVYDVT   95 (154)
Q Consensus        74 ------~~~~~~~~~~~~~~~v~v~d~~   95 (154)
                            ........++++|++++|+|..
T Consensus        99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence                  2223344578899999999974

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.37  E-value=5.2e-12  Score=80.25  Aligned_cols=93  Identities=27%  Similarity=0.304  Sum_probs=67.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCC-CC-CcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      +|++++|..|+|||+|+.++....+.. +. ++.+                           +........+.+++++.|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            489999999999999999997776632 11 2221                           222234456778999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      |+.++.++++.+   |...+... .+.+.|.++++||.|+.++.+.
T Consensus        54 ~~~~~~~s~~~~---~~~~i~~~-~k~dl~~~~~~nk~dl~~~~~~   95 (124)
T smart00010       54 WRVDDRDSADNK---NVPEVLVG-NKSDLPILVGGNRDVLEEERQV   95 (124)
T ss_pred             EEccCHHHHHHH---hHHHHHhc-CCCCCcEEEEeechhhHhhCcC
Confidence            999999888755   76666554 4567889999999999544433

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.37  E-value=1.8e-12  Score=104.64  Aligned_cols=117  Identities=20%  Similarity=0.243  Sum_probs=79.1

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCCC------------CCCC---cceeeeEEE----EEEECCeEEEEEEEeCCC
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE------------ELSP---TIGVDFKIK----HVALGGKKMKLAIWDTAG   70 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~------------~~~~---~~~~~~~~~----~~~~~~~~~~~~i~D~~g   70 (154)
                      .+...+|+++|+.++|||||+.+++...-.            +..+   ..+++....    .+..++..+.++++||||
T Consensus        17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG   96 (731)
T PRK07560         17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG   96 (731)
T ss_pred             hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence            345678999999999999999999753210            0000   112222221    223355577899999999


Q ss_pred             cccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                      +.+|.......++.+|++++|+|+...-... ....|.....     .+.|.+++.||+|+.
T Consensus        97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~-----~~~~~iv~iNK~D~~  152 (731)
T PRK07560         97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR-----ERVKPVLFINKVDRL  152 (731)
T ss_pred             ccChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH-----cCCCeEEEEECchhh
Confidence            9998887888899999999999988753322 2222433222     245679999999986

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.35  E-value=1.2e-11  Score=89.90  Aligned_cols=129  Identities=19%  Similarity=0.149  Sum_probs=91.4

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCCC-----------------C---------------CCCcceeeeEEEEEEEC
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-----------------E---------------LSPTIGVDFKIKHVALG   57 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~-----------------~---------------~~~~~~~~~~~~~~~~~   57 (154)
                      ....+|++-+|...-||||||-||+...-.                 .               .....|+|......++.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            345689999999999999999999743110                 0               00123667777777777


Q ss_pred             CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           58 GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      .++.+|.+.|||||++|...+......||+.|+++|+...-.-+.-+..+...+     ..-..+++..||+||.+..+.
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sL-----LGIrhvvvAVNKmDLvdy~e~  157 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASL-----LGIRHVVVAVNKMDLVDYSEE  157 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHH-----hCCcEEEEEEeeecccccCHH
Confidence            788899999999999999888888889999999999854322222222122111     123468999999999988876


Q ss_pred             hhhhhh
Q 031704          138 FLSGFW  143 (154)
Q Consensus       138 ~~~~~~  143 (154)
                      ..+++.
T Consensus       158 ~F~~I~  163 (431)
T COG2895         158 VFEAIV  163 (431)
T ss_pred             HHHHHH
Confidence            554443

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.34  E-value=1.4e-11  Score=91.95  Aligned_cols=118  Identities=18%  Similarity=0.161  Sum_probs=74.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC----CCC-----------CCCCccee-----eeEE---EEEE---ECCeEEEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSD----TFE-----------ELSPTIGV-----DFKI---KHVA---LGGKKMKLA   64 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~----~~~-----------~~~~~~~~-----~~~~---~~~~---~~~~~~~~~   64 (154)
                      ...+.|.++|+.++|||||+|+|.+.    ...           -.+...|-     +...   ..+.   .++-..++.
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            45689999999999999999999988    222           11222221     1111   1122   234567899


Q ss_pred             EEeCCCccccc-------cc----------------------cccccc-CccEEEEEE-ECC----CcchHHHHHHHHHH
Q 031704           65 IWDTAGQERFR-------TL----------------------TSSYYR-GAQGIIMVY-DVT----RRDTFTNLADIWAK  109 (154)
Q Consensus        65 i~D~~g~~~~~-------~~----------------------~~~~~~-~~~~~v~v~-d~~----~~~s~~~~~~~~~~  109 (154)
                      ++||+|-..-.       ..                      ....++ +++..++|. |.+    .++........|.+
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~  174 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE  174 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence            99999922100       00                      233455 789888888 653    12344455554677


Q ss_pred             HHhhhcCCCCCcEEEEEeCCCCC
Q 031704          110 EIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus       110 ~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                      .++..    ++|+++|.||.|..
T Consensus       175 eLk~~----~kPfiivlN~~dp~  193 (492)
T TIGR02836       175 ELKEL----NKPFIILLNSTHPY  193 (492)
T ss_pred             HHHhc----CCCEEEEEECcCCC
Confidence            77654    89999999999954

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.34  E-value=4.5e-11  Score=86.43  Aligned_cols=120  Identities=20%  Similarity=0.338  Sum_probs=70.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------CcceeeeEEEEEEECCeEEEEEEEeCCCccc-------
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-----------PTIGVDFKIKHVALGGKKMKLAIWDTAGQER-------   73 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------   73 (154)
                      -.++|+|+|.+|+|||||+|.|++.......           .+..+........-++..+.+.++||||...       
T Consensus         3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~   82 (281)
T PF00735_consen    3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC   82 (281)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence            3589999999999999999999987652111           1222333333444567889999999999110       


Q ss_pred             -----------ccc-------cccccc--cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           74 -----------FRT-------LTSSYY--RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        74 -----------~~~-------~~~~~~--~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                                 +..       ..+..+  .+.|+|++.++.+... +..+.-...+.+     ....++|-|..|+|...
T Consensus        83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~L-----s~~vNvIPvIaKaD~lt  156 (281)
T PF00735_consen   83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRL-----SKRVNVIPVIAKADTLT  156 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHH-----TTTSEEEEEESTGGGS-
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHh-----cccccEEeEEecccccC
Confidence                       000       000001  2569999999987532 222211122333     23567899999999987


Q ss_pred             chhh
Q 031704          134 PWRL  137 (154)
Q Consensus       134 ~~~~  137 (154)
                      +.+.
T Consensus       157 ~~el  160 (281)
T PF00735_consen  157 PEEL  160 (281)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6655

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.33  E-value=9.2e-12  Score=95.34  Aligned_cols=122  Identities=12%  Similarity=0.130  Sum_probs=76.0

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEE-----------------EEECC------------
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKH-----------------VALGG------------   58 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~-----------------~~~~~------------   58 (154)
                      ....++|.++|+-..|||||+..|.+....  ......|.|....-                 .....            
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            345689999999999999999999975331  00111111100000                 00000            


Q ss_pred             e----EEEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           59 K----KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        59 ~----~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      .    ...+.++|+||++.|.......+..+|++++|+|+..........+ ....+...   .-.++++|.||+|+.+.
T Consensus       111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~e-hl~i~~~l---gi~~iIVvlNKiDlv~~  186 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSE-HLAAVEIM---KLKHIIILQNKIDLVKE  186 (460)
T ss_pred             ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHH-HHHHHHHc---CCCcEEEEEecccccCH
Confidence            0    2368899999999988777777889999999999987421111222 12222222   12468999999999764


Q ss_pred             h
Q 031704          135 W  135 (154)
Q Consensus       135 ~  135 (154)
                      .
T Consensus       187 ~  187 (460)
T PTZ00327        187 A  187 (460)
T ss_pred             H
Confidence            4

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=1.2e-11  Score=94.10  Aligned_cols=116  Identities=17%  Similarity=0.127  Sum_probs=86.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECC---eEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGG---KKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      .+=+.++|+.--|||||+-.+=..+. .....-|+|.+..-+.+.-   ....+.|+|||||+.|..+..+-..-+|.++
T Consensus         5 ~PvVtimGHVDHGKTtLLD~IR~t~V-a~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI   83 (509)
T COG0532           5 PPVVTIMGHVDHGKTTLLDKIRKTNV-AAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI   83 (509)
T ss_pred             CCEEEEeCcccCCccchhhhHhcCcc-ccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence            45689999999999999998877665 3344555666666655543   2347889999999999999998889999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      +|.++.+.-.-+....  .+.+    +..+.|+++..||+|.++..
T Consensus        84 LVVa~dDGv~pQTiEA--I~ha----k~a~vP~iVAiNKiDk~~~n  123 (509)
T COG0532          84 LVVAADDGVMPQTIEA--INHA----KAAGVPIVVAINKIDKPEAN  123 (509)
T ss_pred             EEEEccCCcchhHHHH--HHHH----HHCCCCEEEEEecccCCCCC
Confidence            9999998433222211  1122    45589999999999998554

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.32  E-value=5.8e-11  Score=91.10  Aligned_cols=125  Identities=22%  Similarity=0.273  Sum_probs=91.0

Q ss_pred             cccCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 031704            5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR   83 (154)
Q Consensus         5 ~~~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   83 (154)
                      .++......+++.++|+.++|||.+++.++++.+ .....+....+........++...+.+.|.+-. ........- .
T Consensus       417 ~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~  494 (625)
T KOG1707|consen  417 KKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-A  494 (625)
T ss_pred             ccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-c
Confidence            3455667889999999999999999999999888 333345555555666666677767777787754 222222222 6


Q ss_pred             CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      .||+++++||.+++.+|+.+..    ....+......|+++|++|+|+....
T Consensus       495 ~cDv~~~~YDsS~p~sf~~~a~----v~~~~~~~~~~Pc~~va~K~dlDe~~  542 (625)
T KOG1707|consen  495 ACDVACLVYDSSNPRSFEYLAE----VYNKYFDLYKIPCLMVATKADLDEVP  542 (625)
T ss_pred             eeeeEEEecccCCchHHHHHHH----HHHHhhhccCCceEEEeeccccchhh
Confidence            6899999999999999998877    22222233688999999999995444

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.31  E-value=2.7e-11  Score=94.99  Aligned_cols=121  Identities=17%  Similarity=0.202  Sum_probs=72.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCc-cee-eeEEEEEEECCeEEEEEEEeCCCccccc-------cc---c
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPT-IGV-DFKIKHVALGGKKMKLAIWDTAGQERFR-------TL---T   78 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~---~   78 (154)
                      +..++|+++|.+|+||||++|.+++.+....... .+. .........++  ..+.++||||-....       .+   .
T Consensus       116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I  193 (763)
T TIGR00993       116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV  193 (763)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence            4557999999999999999999999875222211 111 11111222333  468899999955321       11   1


Q ss_pred             ccccc--CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCC-CCCcEEEEEeCCCCCCc
Q 031704           79 SSYYR--GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTN-QDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        79 ~~~~~--~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~ivv~nK~Dl~~~  134 (154)
                      ..++.  ..|++++|..+........-.. +++.+....+. .-...|||.|+.|...+
T Consensus       194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~-aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp  251 (763)
T TIGR00993       194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLP-LLRTITDVLGPSIWFNAIVTLTHAASAPP  251 (763)
T ss_pred             HHHHhcCCCCEEEEEEeCCCccccHHHHH-HHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence            12233  4799999998764333212122 44444443232 23478999999998753

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=1.6e-11  Score=97.72  Aligned_cols=120  Identities=18%  Similarity=0.192  Sum_probs=87.7

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-----------------CCCCCcceeeeEEEEEEECCe-EEEEEEEeCCCc
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-----------------EELSPTIGVDFKIKHVALGGK-KMKLAIWDTAGQ   71 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~   71 (154)
                      .....+|.++|+-.+||||+..+++...-                 .......|+|.........-+ .+.++++|||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            45668999999999999999999874211                 011123355555554444334 589999999999


Q ss_pred             ccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        72 ~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      -+|.....+.++-+|++++|+|+...-....-.- |.+..     ..+.|.+++.||.|....+
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv-~rqa~-----~~~vp~i~fiNKmDR~~a~  144 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETV-WRQAD-----KYGVPRILFVNKMDRLGAD  144 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHHH-HHHHh-----hcCCCeEEEEECccccccC
Confidence            9999999999999999999999987544333222 55443     3478999999999986554

>smart00275 G_alpha G protein alpha subunit

Probab=99.31  E-value=1.4e-11  Score=91.47  Aligned_cols=73  Identities=14%  Similarity=0.158  Sum_probs=57.4

Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCCc----------chHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCC
Q 031704           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD  130 (154)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D  130 (154)
                      +.+.+||.+|+...+..|..++.+++++++|.|+++.          ..+......|...+ ....-.+.|++|++||.|
T Consensus       184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~-~~~~~~~~piil~~NK~D  262 (342)
T smart00275      184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESIC-NSRWFANTSIILFLNKID  262 (342)
T ss_pred             eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHH-cCccccCCcEEEEEecHH
Confidence            5588999999999999999999999999999999973          35666666343333 333456789999999999


Q ss_pred             CCCc
Q 031704          131 KVCP  134 (154)
Q Consensus       131 l~~~  134 (154)
                      +..+
T Consensus       263 ~~~~  266 (342)
T smart00275      263 LFEE  266 (342)
T ss_pred             hHHH
Confidence            8643

Subunit of G proteins that contains the guanine nucleotide binding site

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=4.7e-11  Score=91.10  Aligned_cols=123  Identities=20%  Similarity=0.199  Sum_probs=90.4

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCC--C------------CCCCcceeeeEEE---EEEECCeEEEEEEEeCCCc
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF--E------------ELSPTIGVDFKIK---HVALGGKKMKLAIWDTAGQ   71 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~--~------------~~~~~~~~~~~~~---~~~~~~~~~~~~i~D~~g~   71 (154)
                      +.++..++.|+.+-.=|||||..+++...-  .            +..-..|+|....   .++.+++.+.++++|||||
T Consensus        56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH  135 (650)
T KOG0462|consen   56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH  135 (650)
T ss_pred             chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence            336678999999999999999999975322  1            1111234443332   3344577899999999999


Q ss_pred             ccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        72 ~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      .+|.....+.+.-|+++++|.|++..-.-+....+|+-.      ..+..+|.|.||+|+..++.-
T Consensus       136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf------e~~L~iIpVlNKIDlp~adpe  195 (650)
T KOG0462|consen  136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF------EAGLAIIPVLNKIDLPSADPE  195 (650)
T ss_pred             ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH------HcCCeEEEeeeccCCCCCCHH
Confidence            999999999999999999999999876555555533322      235678999999999866643

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=5e-11  Score=92.80  Aligned_cols=117  Identities=26%  Similarity=0.322  Sum_probs=87.8

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----------------cceeeeEEEEEEE-----CCeEEEEEEEe
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP----------------TIGVDFKIKHVAL-----GGKKMKLAIWD   67 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~-----~~~~~~~~i~D   67 (154)
                      ......+++++|+-..|||+|...|..+..+....                ..|++......++     .++.+-++++|
T Consensus       124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD  203 (971)
T KOG0468|consen  124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD  203 (971)
T ss_pred             CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence            34577899999999999999999998776533211                1233333333332     56788999999


Q ss_pred             CCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCC
Q 031704           68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK  131 (154)
Q Consensus        68 ~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl  131 (154)
                      |||+-.|.......++.+|++++++|+...-++..-      .+.++....+.|+++|.||.|.
T Consensus       204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE------r~ikhaiq~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE------RIIKHAIQNRLPIVVVINKVDR  261 (971)
T ss_pred             CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH------HHHHHHHhccCcEEEEEehhHH
Confidence            999999999888889999999999999987765432      2222324557899999999996

>smart00053 DYNc Dynamin, GTPase

Probab=99.24  E-value=1.4e-10  Score=81.86  Aligned_cols=120  Identities=18%  Similarity=0.159  Sum_probs=70.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcce-----------eeeEEEEEEE----------------------
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIG-----------VDFKIKHVAL----------------------   56 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~-----------~~~~~~~~~~----------------------   56 (154)
                      -..++++++|+.|+||||+++.+.+..+ +......+           ...+...+..                      
T Consensus        24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~  103 (240)
T smart00053       24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV  103 (240)
T ss_pred             CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence            3557899999999999999999998753 21110000           0000011100                      


Q ss_pred             ----------------CC-eEEEEEEEeCCCccc-------------ccccccccccC-ccEEEEEEECCCcchHHHHHH
Q 031704           57 ----------------GG-KKMKLAIWDTAGQER-------------FRTLTSSYYRG-AQGIIMVYDVTRRDTFTNLAD  105 (154)
Q Consensus        57 ----------------~~-~~~~~~i~D~~g~~~-------------~~~~~~~~~~~-~~~~v~v~d~~~~~s~~~~~~  105 (154)
                                      .+ ....+.++||||-..             ...+...++++ .+.+++|.|+...-.-.....
T Consensus       104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~  183 (240)
T smart00053      104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK  183 (240)
T ss_pred             cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence                            00 114589999999642             12234455664 468999998865333222222


Q ss_pred             HHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704          106 IWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus       106 ~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                       +.+.+    .....++++|+||+|..++.
T Consensus       184 -ia~~l----d~~~~rti~ViTK~D~~~~~  208 (240)
T smart00053      184 -LAKEV----DPQGERTIGVITKLDLMDEG  208 (240)
T ss_pred             -HHHHH----HHcCCcEEEEEECCCCCCcc
Confidence             22233    33477899999999997654

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.23  E-value=1.3e-11  Score=91.61  Aligned_cols=112  Identities=21%  Similarity=0.249  Sum_probs=57.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCC--cceeeeEEEEEEECCeEEEEEEEeCCCcccccccccc-----c
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSP--TIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSS-----Y   81 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-----~   81 (154)
                      +..++|+|+|.+|+|||||||.|-+-..  ....+  ....|.....+.. ...-.+.+||.||..........     .
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            4568999999999999999999965322  11111  1111222222322 22236899999995432222222     2


Q ss_pred             ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCC
Q 031704           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK  131 (154)
Q Consensus        82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl  131 (154)
                      +.+.|.++++.+ +   .|......+.+.++..    ++|+++|-+|+|.
T Consensus       112 ~~~yD~fiii~s-~---rf~~ndv~La~~i~~~----gK~fyfVRTKvD~  153 (376)
T PF05049_consen  112 FYRYDFFIIISS-E---RFTENDVQLAKEIQRM----GKKFYFVRTKVDS  153 (376)
T ss_dssp             GGG-SEEEEEES-S---S--HHHHHHHHHHHHT----T-EEEEEE--HHH
T ss_pred             ccccCEEEEEeC-C---CCchhhHHHHHHHHHc----CCcEEEEEecccc
Confidence            556798887665 2   2333333233455544    7789999999996

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>cd01882 BMS1 Bms1

Probab=99.22  E-value=9e-11  Score=82.47  Aligned_cols=110  Identities=17%  Similarity=0.224  Sum_probs=67.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      .....|+++|.+|+|||||++.+.+... .......| +..  ..  ......+.++||||..  .. .....+.+|+++
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i~--i~--~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVl  108 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PIT--VV--TGKKRRLTFIECPNDI--NA-MIDIAKVADLVL  108 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cEE--EE--ecCCceEEEEeCCchH--HH-HHHHHHhcCEEE
Confidence            3456799999999999999999987532 11111112 111  11  1234467889999864  22 233467899999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCc-EEEEEeCCCCCCc
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKVCP  134 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl~~~  134 (154)
                      +++|++....... .. +...+..    .+.| +++|.||+|+..+
T Consensus       109 lviDa~~~~~~~~-~~-i~~~l~~----~g~p~vi~VvnK~D~~~~  148 (225)
T cd01882         109 LLIDASFGFEMET-FE-FLNILQV----HGFPRVMGVLTHLDLFKK  148 (225)
T ss_pred             EEEecCcCCCHHH-HH-HHHHHHH----cCCCeEEEEEeccccCCc
Confidence            9999876443322 12 2233332    2456 4559999999744

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.22  E-value=1.1e-10  Score=87.86  Aligned_cols=121  Identities=22%  Similarity=0.246  Sum_probs=88.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC--------------CCCCcceeeeEEEEEEE-----CCeEEEEEEEeCCCc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE--------------ELSPTIGVDFKIKHVAL-----GGKKMKLAIWDTAGQ   71 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~   71 (154)
                      ....++.++.+-.=|||||..|++...-.              +.....|+|.....+.+     +++.|.++++|||||
T Consensus         7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH   86 (603)
T COG0481           7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH   86 (603)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence            45568889999999999999999753210              11122344443333322     568899999999999


Q ss_pred             ccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        72 ~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      .+|.-...+.+..|.+++++.|+++.-.-+.+.+. +.-+.     .+.-++-|.||+||+.++..
T Consensus        87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~-YlAle-----~~LeIiPViNKIDLP~Adpe  146 (603)
T COG0481          87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANV-YLALE-----NNLEIIPVLNKIDLPAADPE  146 (603)
T ss_pred             cceEEEehhhHhhCCCcEEEEECccchHHHHHHHH-HHHHH-----cCcEEEEeeecccCCCCCHH
Confidence            99998888889999999999999997766666663 33332     35678999999999866543

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=1.4e-10  Score=89.00  Aligned_cols=132  Identities=20%  Similarity=0.193  Sum_probs=94.6

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcC----------------------CC--------CCCCCcceeeeEEEEEEEC
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSD----------------------TF--------EELSPTIGVDFKIKHVALG   57 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~----------------------~~--------~~~~~~~~~~~~~~~~~~~   57 (154)
                      ......++++++|...+|||||.-+++..                      .+        .......|++......++.
T Consensus       172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe  251 (603)
T KOG0458|consen  172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE  251 (603)
T ss_pred             cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence            34457799999999999999999988631                      01        0111234666777777777


Q ss_pred             CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcch---HH---HHHHHHHHHHhhhcCCCCCcEEEEEeCCCC
Q 031704           58 GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT---FT---NLADIWAKEIDLYSTNQDCIKLLVGNKVDK  131 (154)
Q Consensus        58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl  131 (154)
                      .....+++.|.||+-.|...+.....++|++++|.|++..+-   |+   ..++ ....++..   .-..++|+.||.|+
T Consensus       252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~L---gi~qlivaiNKmD~  327 (603)
T KOG0458|consen  252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRSL---GISQLIVAINKMDL  327 (603)
T ss_pred             cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHH-HHHHHHHc---CcceEEEEeecccc
Confidence            778899999999999888888888899999999999875321   11   1222 22333333   23468999999999


Q ss_pred             CCchhhhhhhhh
Q 031704          132 VCPWRLFLSGFW  143 (154)
Q Consensus       132 ~~~~~~~~~~~~  143 (154)
                      .+..+....++.
T Consensus       328 V~Wsq~RF~eIk  339 (603)
T KOG0458|consen  328 VSWSQDRFEEIK  339 (603)
T ss_pred             cCccHHHHHHHH
Confidence            998887766554

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=1.7e-10  Score=84.61  Aligned_cols=125  Identities=21%  Similarity=0.252  Sum_probs=82.3

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCcceeeeEEEEEEECCeE-------------------------
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE--LSPTIGVDFKIKHVALGGKK-------------------------   60 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~-------------------------   60 (154)
                      +.....+-|+++|+-+.||||||+.|+.++++.  ..|..+.++....+..+...                         
T Consensus        53 ~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~af  132 (532)
T KOG1954|consen   53 PDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAF  132 (532)
T ss_pred             cccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHH
Confidence            345566789999999999999999999999842  22333233333444332111                         


Q ss_pred             --------------EEEEEEeCCCcc-----------cccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhc
Q 031704           61 --------------MKLAIWDTAGQE-----------RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYS  115 (154)
Q Consensus        61 --------------~~~~i~D~~g~~-----------~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~  115 (154)
                                    -+++++||||.-           .|......+..++|.++++||....+--++... ....++.+ 
T Consensus       133 lnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~-vi~aLkG~-  210 (532)
T KOG1954|consen  133 LNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKR-VIDALKGH-  210 (532)
T ss_pred             HHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHH-HHHHhhCC-
Confidence                          128999999932           234445556788999999999876544344333 23344432 


Q ss_pred             CCCCCcEEEEEeCCCCCCchhh
Q 031704          116 TNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus       116 ~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                         .-.+.||+||.|..+.++.
T Consensus       211 ---EdkiRVVLNKADqVdtqqL  229 (532)
T KOG1954|consen  211 ---EDKIRVVLNKADQVDTQQL  229 (532)
T ss_pred             ---cceeEEEeccccccCHHHH
Confidence               3347899999999988764

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=1.4e-10  Score=88.72  Aligned_cols=119  Identities=16%  Similarity=0.153  Sum_probs=87.9

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECC-eEEEEEEEeCCCcccccccccccccCccEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGG-KKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      ..+.+=+.++|...=|||||+.+|=+... .....-|+|.++.-+.+.- +.-.++|.|||||..|..+..+..+-.|.+
T Consensus       150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~V-AA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIv  228 (683)
T KOG1145|consen  150 EPRPPVVTIMGHVDHGKTTLLDALRKSSV-AAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIV  228 (683)
T ss_pred             CCCCCeEEEeecccCChhhHHHHHhhCce-ehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEE
Confidence            34667899999999999999999877665 3344555666665554421 225788999999999999999888899999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ++|..+.|.-.-+.+.     -+. +....+.|+|+..||||.+.+.
T Consensus       229 VLVVAadDGVmpQT~E-----aIk-hAk~A~VpiVvAinKiDkp~a~  269 (683)
T KOG1145|consen  229 VLVVAADDGVMPQTLE-----AIK-HAKSANVPIVVAINKIDKPGAN  269 (683)
T ss_pred             EEEEEccCCccHhHHH-----HHH-HHHhcCCCEEEEEeccCCCCCC
Confidence            9999998854322221     222 2256689999999999986444

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.19  E-value=8.3e-11  Score=87.28  Aligned_cols=82  Identities=21%  Similarity=0.234  Sum_probs=58.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeE---------------EEEEEEeCCCccc----
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK---------------MKLAIWDTAGQER----   73 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~----   73 (154)
                      ++|.++|.|++|||||+|++.+.+. ...+|.++.......+.+.+..               ..+.+.|+||-..    
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            6899999999999999999999885 3444555555555555554421               2589999999432    


Q ss_pred             ---ccccccccccCccEEEEEEECC
Q 031704           74 ---FRTLTSSYYRGAQGIIMVYDVT   95 (154)
Q Consensus        74 ---~~~~~~~~~~~~~~~v~v~d~~   95 (154)
                         ........++++|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence               1122344578999999999985

>cd01900 YchF YchF subfamily

Probab=99.15  E-value=7.4e-11  Score=84.80  Aligned_cols=80  Identities=21%  Similarity=0.226  Sum_probs=56.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeE---------------EEEEEEeCCCccc------
Q 031704           16 LLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK---------------MKLAIWDTAGQER------   73 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~------   73 (154)
                      |.++|.|++|||||+|++.+.+. ...+|.++.......+.+.+..               ..+.++|+||-..      
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            57899999999999999999887 4445665555555555554431               2589999999432      


Q ss_pred             -ccccccccccCccEEEEEEECC
Q 031704           74 -FRTLTSSYYRGAQGIIMVYDVT   95 (154)
Q Consensus        74 -~~~~~~~~~~~~~~~v~v~d~~   95 (154)
                       ........++++|++++|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence             1112334467899999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.13  E-value=2.1e-10  Score=84.39  Aligned_cols=76  Identities=17%  Similarity=0.146  Sum_probs=59.2

Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcch----------HHHHHHHHHHHHhhhcCCCCCcEEEEEeC
Q 031704           59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT----------FTNLADIWAKEIDLYSTNQDCIKLLVGNK  128 (154)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s----------~~~~~~~~~~~~~~~~~~~~~~~ivv~nK  128 (154)
                      +...+.++|++|+-..+..|.+++.+++++++|.++++.+.          ...... +++.+.+...-.+.++||++||
T Consensus       193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~-LF~sI~n~~~F~~tsiiLFLNK  271 (354)
T KOG0082|consen  193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLK-LFESICNNKWFANTSIILFLNK  271 (354)
T ss_pred             CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHH-HHHHHhcCcccccCcEEEEeec
Confidence            34678899999999889999999999999999999986332          333344 4555555556678999999999


Q ss_pred             CCCCCch
Q 031704          129 VDKVCPW  135 (154)
Q Consensus       129 ~Dl~~~~  135 (154)
                      .||..+.
T Consensus       272 ~DLFeEK  278 (354)
T KOG0082|consen  272 KDLFEEK  278 (354)
T ss_pred             HHHHHHH
Confidence            9997554

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.11  E-value=5.9e-10  Score=83.93  Aligned_cols=119  Identities=18%  Similarity=0.193  Sum_probs=85.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC--CC-------------CCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF--EE-------------LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL   77 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~--~~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   77 (154)
                      .-+|+++.+..-|||||+..|+.+.-  ..             .....|+|.-.+.-.+..+.+.++++|||||.+|-..
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE   84 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE   84 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence            46899999999999999999987642  11             1123456665555555556688999999999999999


Q ss_pred             ccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        78 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      ..+.+.=.|+++++.|+...-.-+ .+- ..+...    ..+.+.|||.||+|..+++..
T Consensus        85 VERvl~MVDgvlLlVDA~EGpMPQ-TrF-VlkKAl----~~gL~PIVVvNKiDrp~Arp~  138 (603)
T COG1217          85 VERVLSMVDGVLLLVDASEGPMPQ-TRF-VLKKAL----ALGLKPIVVINKIDRPDARPD  138 (603)
T ss_pred             hhhhhhhcceEEEEEEcccCCCCc-hhh-hHHHHH----HcCCCcEEEEeCCCCCCCCHH
Confidence            988899999999999998743211 111 222222    224556889999999887754

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.07  E-value=4.2e-10  Score=73.50  Aligned_cols=54  Identities=24%  Similarity=0.344  Sum_probs=42.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ   71 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (154)
                      +++++|.+|+|||||+|++++..........+.+.....+.+++   .+.+|||||-
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            89999999999999999999988754555555555555666654   4689999994

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.05  E-value=2.5e-10  Score=71.55  Aligned_cols=104  Identities=20%  Similarity=0.110  Sum_probs=67.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccc----cccccCccEEEE
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLT----SSYYRGAQGIIM   90 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----~~~~~~~~~~v~   90 (154)
                      ||+++|..|+|||||.+.+.+... -+..+..+       +++++    -.+||||.-.....+    .....++|++++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~-lykKTQAv-------e~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~   70 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDT-LYKKTQAV-------EFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVIIY   70 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchh-hhccccee-------eccCc----cccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence            799999999999999999988764 22222221       22211    135999954333333    333567899999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      +..++++.+.-..      .+.   .....|+|-|.+|.||..+..+++
T Consensus        71 v~~and~~s~f~p------~f~---~~~~k~vIgvVTK~DLaed~dI~~  110 (148)
T COG4917          71 VHAANDPESRFPP------GFL---DIGVKKVIGVVTKADLAEDADISL  110 (148)
T ss_pred             eecccCccccCCc------ccc---cccccceEEEEecccccchHhHHH
Confidence            9999998653211      111   223456899999999985555543

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.05  E-value=7.7e-10  Score=91.49  Aligned_cols=99  Identities=19%  Similarity=0.177  Sum_probs=67.9

Q ss_pred             CHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCe------------------EEEEEEEeCCCcccccccccccccCcc
Q 031704           25 GKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGK------------------KMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (154)
Q Consensus        25 GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~i~D~~g~~~~~~~~~~~~~~~~   86 (154)
                      +||||+.++-+.+. ......|+|.+.....+...                  ...+.||||||++.+..+....+..+|
T Consensus       473 ~KTtLLD~iR~t~v-~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        473 HNTTLLDKIRKTRV-AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             ccccHHHHHhCCCc-ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            59999999988776 22334444444443322110                  012899999999999888777788899


Q ss_pred             EEEEEEECCCc---chHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           87 GIIMVYDVTRR---DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        87 ~~v~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      ++++|+|+++.   ++++.+     ..+..    .+.|+++|+||+|+..
T Consensus       552 ivlLVVDa~~Gi~~qT~e~I-----~~lk~----~~iPiIVViNKiDL~~  592 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIEAI-----NILRQ----YKTPFVVAANKIDLIP  592 (1049)
T ss_pred             EEEEEEECcccCCHhHHHHH-----HHHHH----cCCCEEEEEECCCCcc
Confidence            99999999873   333322     22222    2579999999999964

>cd01858 NGP_1 NGP-1

Probab=99.04  E-value=9e-10  Score=73.20  Aligned_cols=56  Identities=21%  Similarity=0.313  Sum_probs=42.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCC
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG   70 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   70 (154)
                      ...+++++|.+|+|||||+|++.+.......+..|.|.....+..+.   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence            35789999999999999999999887755556666555555544433   367889998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.04  E-value=4.5e-10  Score=77.61  Aligned_cols=120  Identities=26%  Similarity=0.411  Sum_probs=78.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc-----cccccccccCc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF-----RTLTSSYYRGA   85 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~~~~   85 (154)
                      .-||+++|.+|+|||++--.++.+-.  ....+..+++....+..+-| ...+++||+.|++.+     .......++..
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            45999999999999998766664332  22233333344444443333 246789999998843     23445568889


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhcC-CCCCcEEEEEeCCCCCCc
Q 031704           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~Dl~~~  134 (154)
                      ++++++||+...+...++.. +..-+...+. .+...+....+|.||...
T Consensus        83 ~vli~vFDves~e~~~D~~~-yqk~Le~ll~~SP~AkiF~l~hKmDLv~~  131 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHY-YQKCLEALLQNSPEAKIFCLLHKMDLVQE  131 (295)
T ss_pred             eeeeeeeeccchhhhhhHHH-HHHHHHHHHhcCCcceEEEEEeechhccc
Confidence            99999999998776656555 4333333222 345577888999999643

>PRK13768 GTPase; Provisional

Probab=99.04  E-value=6.2e-10  Score=79.54  Aligned_cols=73  Identities=16%  Similarity=0.147  Sum_probs=44.8

Q ss_pred             EEEEEeCCCcccc---cccccccc---cC--ccEEEEEEECCCcchHHHHHHH-HHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           62 KLAIWDTAGQERF---RTLTSSYY---RG--AQGIIMVYDVTRRDTFTNLADI-WAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        62 ~~~i~D~~g~~~~---~~~~~~~~---~~--~~~~v~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                      .+.+||+||+.+.   +..+..++   ..  .+++++++|+....+....... |.......  ..+.|+++|+||+|+.
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~--~~~~~~i~v~nK~D~~  175 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL--RLGLPQIPVLNKADLL  175 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH--HcCCCEEEEEEhHhhc
Confidence            5889999997552   33332222   22  7999999999764433332221 22222211  2368999999999997


Q ss_pred             Cchh
Q 031704          133 CPWR  136 (154)
Q Consensus       133 ~~~~  136 (154)
                      ...+
T Consensus       176 ~~~~  179 (253)
T PRK13768        176 SEEE  179 (253)
T ss_pred             Cchh
Confidence            6543

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.03  E-value=4e-10  Score=85.40  Aligned_cols=119  Identities=20%  Similarity=0.162  Sum_probs=76.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----ccc-------ccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----FRT-------LTS   79 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~-------~~~   79 (154)
                      ....++++|-|++|||||+|.+..... ...+++++-.....  .++.+...+++.||||.-+    .+.       ...
T Consensus       167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vG--H~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL  244 (620)
T KOG1490|consen  167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVG--HLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL  244 (620)
T ss_pred             CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhh--hhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence            346889999999999999999888776 44444443222222  2344556788999999321    111       122


Q ss_pred             ccccCccEEEEEEECC--CcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           80 SYYRGAQGIIMVYDVT--RRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        80 ~~~~~~~~~v~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      .+++  .++++..|++  +.-|...... ++..+.-  ...+.|.|+|+||+|+.....+
T Consensus       245 AHLr--aaVLYfmDLSe~CGySva~Qvk-LfhsIKp--LFaNK~~IlvlNK~D~m~~edL  299 (620)
T KOG1490|consen  245 AHLR--SAVLYFMDLSEMCGYSVAAQVK-LYHSIKP--LFANKVTILVLNKIDAMRPEDL  299 (620)
T ss_pred             HHhh--hhheeeeechhhhCCCHHHHHH-HHHHhHH--HhcCCceEEEeecccccCcccc
Confidence            2334  4566666665  5667776666 4444433  2357889999999999766554

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.02  E-value=1e-09  Score=74.03  Aligned_cols=56  Identities=27%  Similarity=0.370  Sum_probs=44.5

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCC
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG   70 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   70 (154)
                      ..++++++|.+|+|||||+|++.+.......+..|.|.....+..+.   .+.++||||
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeCC---CEEEEECcC
Confidence            34799999999999999999999988755566667666655555543   478899998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.01  E-value=2.6e-09  Score=75.71  Aligned_cols=71  Identities=20%  Similarity=0.074  Sum_probs=41.9

Q ss_pred             EEEEEEeCCCccc-cccccccc-----c--cCccEEEEEEECC---CcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCC
Q 031704           61 MKLAIWDTAGQER-FRTLTSSY-----Y--RGAQGIIMVYDVT---RRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV  129 (154)
Q Consensus        61 ~~~~i~D~~g~~~-~~~~~~~~-----~--~~~~~~v~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~  129 (154)
                      ....++||||+-+ |.=.....     +  ....+++++.|..   ++.+|-..--+-...+.+    ...|++++.||+
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk----tklp~ivvfNK~  191 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK----TKLPFIVVFNKT  191 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh----ccCCeEEEEecc
Confidence            4578899999642 22111111     1  2346788888854   344554332212234443    478999999999


Q ss_pred             CCCCch
Q 031704          130 DKVCPW  135 (154)
Q Consensus       130 Dl~~~~  135 (154)
                      |+.+..
T Consensus       192 Dv~d~~  197 (366)
T KOG1532|consen  192 DVSDSE  197 (366)
T ss_pred             cccccH
Confidence            997664

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.00  E-value=4.9e-10  Score=79.29  Aligned_cols=73  Identities=15%  Similarity=0.199  Sum_probs=34.1

Q ss_pred             EEEEEeCCCcccccccccc------cc--cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           62 KLAIWDTAGQERFRTLTSS------YY--RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        62 ~~~i~D~~g~~~~~~~~~~------~~--~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      .+.++|||||.++-..+..      .+  ...-++++++|......-......++..+... ...+.|.+.|.||+|+..
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~-~~~~lP~vnvlsK~Dl~~  170 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIM-LRLELPHVNVLSKIDLLS  170 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHH-HHHTSEEEEEE--GGGS-
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHH-hhCCCCEEEeeeccCccc
Confidence            5789999998654332221      12  23468899999764433221111122111111 123789999999999987


Q ss_pred             ch
Q 031704          134 PW  135 (154)
Q Consensus       134 ~~  135 (154)
                      +.
T Consensus       171 ~~  172 (238)
T PF03029_consen  171 KY  172 (238)
T ss_dssp             HH
T ss_pred             ch
Confidence            44

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=1.8e-09  Score=77.19  Aligned_cols=125  Identities=19%  Similarity=0.129  Sum_probs=85.3

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcC----------CC-----CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSD----------TF-----EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE   72 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~----------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   72 (154)
                      ......++|..+|.-.-|||||...+..-          .+     .......|++....+..+.....++-..|+||+.
T Consensus         7 ~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHa   86 (394)
T COG0050           7 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHA   86 (394)
T ss_pred             cCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChH
Confidence            44456799999999999999999887531          11     1222345667777776665555667778999999


Q ss_pred             cccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        73 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      +|-..+....-+.|+.|+|.++++...-......   ++.++  ..-..+++++||+|+.++++.
T Consensus        87 DYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi---Llarq--vGvp~ivvflnK~Dmvdd~el  146 (394)
T COG0050          87 DYVKNMITGAAQMDGAILVVAATDGPMPQTREHI---LLARQ--VGVPYIVVFLNKVDMVDDEEL  146 (394)
T ss_pred             HHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh---hhhhh--cCCcEEEEEEecccccCcHHH
Confidence            8877766666778999999999984433222221   11111  122357889999999975543

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.99  E-value=1.2e-09  Score=86.28  Aligned_cols=127  Identities=23%  Similarity=0.330  Sum_probs=93.7

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCC---------------CCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDT---------------FEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE   72 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   72 (154)
                      .+.+...++.++.+..-|||||+..|+..+               +.+...+.|+|.....+..-.+.+.++++|+|||-
T Consensus         4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv   83 (887)
T KOG0467|consen    4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV   83 (887)
T ss_pred             CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence            445567899999999999999999987542               13445677777777776666678899999999999


Q ss_pred             cccccccccccCccEEEEEEECCC---cchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCC-CCchhhhhhhhh
Q 031704           73 RFRTLTSSYYRGAQGIIMVYDVTR---RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK-VCPWRLFLSGFW  143 (154)
Q Consensus        73 ~~~~~~~~~~~~~~~~v~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl-~~~~~~~~~~~~  143 (154)
                      +|........+-+|++++++|+..   .++..-+++.|.+.         ...++|.||+|. +.+-+....|.|
T Consensus        84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~---------~~~~lvinkidrl~~el~lsp~ea~  149 (887)
T KOG0467|consen   84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEG---------LKPILVINKIDRLITELKLSPQEAY  149 (887)
T ss_pred             chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHcc---------CceEEEEehhhhHHHHHhcChHHHH
Confidence            999999888899999999999875   33444445444433         346899999994 334444444443

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=1.1e-08  Score=75.52  Aligned_cols=120  Identities=23%  Similarity=0.308  Sum_probs=74.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCC--------CC--cceeeeEEEEEEECCeEEEEEEEeCCCccc--------
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEEL--------SP--TIGVDFKIKHVALGGKKMKLAIWDTAGQER--------   73 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------   73 (154)
                      -.+.++++|++|.|||||+|.|+.......        .+  +..+........-++-.+.+++.||||.-+        
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w   99 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW   99 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence            348999999999999999999988755211        11  222233333333357788999999999111        


Q ss_pred             ----------cc-------cccccccc--CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           74 ----------FR-------TLTSSYYR--GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        74 ----------~~-------~~~~~~~~--~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                                ++       ...+..+.  +.|+|++-+..+.. .+..+.-...+.+     ....++|-|.-|.|...+
T Consensus       100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l-----~~~vNiIPVI~KaD~lT~  173 (366)
T KOG2655|consen  100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKL-----SKKVNLIPVIAKADTLTK  173 (366)
T ss_pred             hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHH-----hccccccceeeccccCCH
Confidence                      10       11111222  57999999987653 2333322122222     235678888999999877


Q ss_pred             hhh
Q 031704          135 WRL  137 (154)
Q Consensus       135 ~~~  137 (154)
                      .+.
T Consensus       174 ~El  176 (366)
T KOG2655|consen  174 DEL  176 (366)
T ss_pred             HHH
Confidence            665

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.97  E-value=1.8e-08  Score=74.02  Aligned_cols=121  Identities=19%  Similarity=0.325  Sum_probs=74.9

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-----------CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc---c-
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-----------LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF---R-   75 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---~-   75 (154)
                      .-.++|+++|+.|.|||||+|.|++.....           ..++..+......+.-++..+.+++.||||--++   . 
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            456999999999999999999999874411           1223333333344444677889999999991110   0 


Q ss_pred             ----------cccccc------------c--cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCC
Q 031704           76 ----------TLTSSY------------Y--RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK  131 (154)
Q Consensus        76 ----------~~~~~~------------~--~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl  131 (154)
                                +....+            +  .+.|+|++-+..+.. .+..+.-   ..++..  .....+|-|.-|+|.
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DI---e~Mk~l--s~~vNlIPVI~KaD~  174 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDI---EAMKRL--SKRVNLIPVIAKADT  174 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHH---HHHHHH--hcccCeeeeeecccc
Confidence                      001111            1  246999999987652 3333322   222222  234568889999999


Q ss_pred             CCchhh
Q 031704          132 VCPWRL  137 (154)
Q Consensus       132 ~~~~~~  137 (154)
                      ...++.
T Consensus       175 lT~~El  180 (373)
T COG5019         175 LTDDEL  180 (373)
T ss_pred             CCHHHH
Confidence            776654

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=2.2e-09  Score=74.86  Aligned_cols=122  Identities=21%  Similarity=0.269  Sum_probs=81.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-cccc--ccccccCccEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-FRTL--TSSYYRGAQGI   88 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~--~~~~~~~~~~~   88 (154)
                      ..++|+++|...+||||+-.-++.+..+..+-...-|.....=.+.+.-+.+.+||.||+-. |...  ....++++.+.
T Consensus        26 ~kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL  105 (347)
T KOG3887|consen   26 MKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL  105 (347)
T ss_pred             CCceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence            34679999999999999888777665544333322222222222344667899999999753 3332  34568899999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      ++|+|+.+ +-.+.+..+..-.-+.+.-++++.+-+..+|.|-..+
T Consensus       106 ifvIDaQd-dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd  150 (347)
T KOG3887|consen  106 IFVIDAQD-DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD  150 (347)
T ss_pred             EEEEechH-HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence            99999775 4455665533333344556788999999999997543

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=1.4e-09  Score=80.06  Aligned_cols=83  Identities=23%  Similarity=0.223  Sum_probs=64.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECC----------------eEEEEEEEeCCCc-----
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGG----------------KKMKLAIWDTAGQ-----   71 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~g~-----   71 (154)
                      +++.++|.||+|||||+|.++.... ...+|..+++.......+..                ....++++|++|-     
T Consensus         3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs   82 (372)
T COG0012           3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS   82 (372)
T ss_pred             ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence            6899999999999999999998887 57788888777666665521                1346899999882     


Q ss_pred             --ccccccccccccCccEEEEEEECCC
Q 031704           72 --ERFRTLTSSYYRGAQGIIMVYDVTR   96 (154)
Q Consensus        72 --~~~~~~~~~~~~~~~~~v~v~d~~~   96 (154)
                        +..-+.....+|++|+++.|.++..
T Consensus        83 ~GeGLGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          83 KGEGLGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             cCCCcchHHHHhhhhcCeEEEEEEecC
Confidence              2344456666899999999999863

>cd01856 YlqF YlqF

Probab=98.91  E-value=4.8e-09  Score=70.68  Aligned_cols=57  Identities=23%  Similarity=0.350  Sum_probs=43.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ   71 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (154)
                      ..++++++|.+|+|||||+|++.+.......+..+.+.....+.++   ..+.++||||.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            4479999999999999999999998775545555556665555554   35789999984

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01859 MJ1464 MJ1464

Probab=98.91  E-value=5.7e-09  Score=69.21  Aligned_cols=56  Identities=25%  Similarity=0.302  Sum_probs=42.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCC
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG   70 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   70 (154)
                      ...+++++|.+++||||++|++.++......++.+.+.....+..++   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            45788999999999999999999877656666766665444444433   588999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.89  E-value=8.5e-09  Score=75.00  Aligned_cols=58  Identities=28%  Similarity=0.399  Sum_probs=45.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ   71 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (154)
                      ...++++++|.+|+|||||+|++.+.+.....+..|.|.....+..+.   .+.++||||-
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi  176 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGK---GLELLDTPGI  176 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence            355899999999999999999999988755566666666665555543   4779999995

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.88  E-value=7.2e-09  Score=75.00  Aligned_cols=58  Identities=24%  Similarity=0.384  Sum_probs=44.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ   71 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (154)
                      ...++++++|.+|+|||||+|++.+.+........|.|.....+.++.   .+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence            346899999999999999999999887655555556665555555543   4689999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.88  E-value=2.3e-08  Score=69.73  Aligned_cols=115  Identities=20%  Similarity=0.276  Sum_probs=69.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCC----------CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc---------
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFE----------ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE---------   72 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------   72 (154)
                      -.++|+|+|.+|.|||||+|.++.....          ....+..+...+..+.-++-..++++.||||--         
T Consensus        45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW  124 (336)
T KOG1547|consen   45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW  124 (336)
T ss_pred             CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence            4589999999999999999999865431          111233333334444456778899999999921         


Q ss_pred             ---------cccc--------ccccccc--CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           73 ---------RFRT--------LTSSYYR--GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        73 ---------~~~~--------~~~~~~~--~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                               ++.+        .....+.  +.++|++-+..+. .++..+.-.+.+.+.+     -..++-|.-|.|-.
T Consensus       125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~-----vvNvvPVIakaDtl  197 (336)
T KOG1547|consen  125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE-----VVNVVPVIAKADTL  197 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh-----hheeeeeEeecccc
Confidence                     1111        1111222  4688888887664 4444443323333332     23567788899964

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.84  E-value=7.7e-09  Score=76.29  Aligned_cols=57  Identities=25%  Similarity=0.329  Sum_probs=49.1

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ   71 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (154)
                      ...++.++|-|++||||+||+|.+.......+..|.|.....+..+..   +.++||||-
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi  187 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGI  187 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence            447899999999999999999999998777777788888888877664   788999994

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.79  E-value=5.4e-08  Score=75.07  Aligned_cols=87  Identities=14%  Similarity=0.149  Sum_probs=57.1

Q ss_pred             EEEEEeCCCc-------------ccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeC
Q 031704           62 KLAIWDTAGQ-------------ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK  128 (154)
Q Consensus        62 ~~~i~D~~g~-------------~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK  128 (154)
                      ...++|.||.             +..-.+...++.+.+++|+|+.-.   +++.-+. ..-.+...+...+...|+|+||
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERS-nVTDLVsq~DP~GrRTIfVLTK  488 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERS-IVTDLVSQMDPHGRRTIFVLTK  488 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---Ccchhhh-hHHHHHHhcCCCCCeeEEEEee
Confidence            4678899991             223344566788999999999644   3444333 2223333446677888999999


Q ss_pred             CCCCCchhhhhhhhhhhhhccccc
Q 031704          129 VDKVCPWRLFLSGFWHFLLSKFYC  152 (154)
Q Consensus       129 ~Dl~~~~~~~~~~~~~~~~~~~~~  152 (154)
                      .|+..+.-...+.+.....+..+|
T Consensus       489 VDlAEknlA~PdRI~kIleGKLFP  512 (980)
T KOG0447|consen  489 VDLAEKNVASPSRIQQIIEGKLFP  512 (980)
T ss_pred             cchhhhccCCHHHHHHHHhcCccc
Confidence            999765555666666666665555

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.78  E-value=2.1e-07  Score=65.49  Aligned_cols=90  Identities=24%  Similarity=0.204  Sum_probs=63.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc-------cccccccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR-------TLTSSYYR   83 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~   83 (154)
                      ..-+++++|-|++|||||+..+..-.. ...+..++.+.....+.+++.  .+++.|.||.-+-.       .......+
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavAr  138 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVAR  138 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEee
Confidence            346899999999999999999987666 555566655555556666654  57778999943211       12333467


Q ss_pred             CccEEEEEEECCCcchHHHH
Q 031704           84 GAQGIIMVYDVTRRDTFTNL  103 (154)
Q Consensus        84 ~~~~~v~v~d~~~~~s~~~~  103 (154)
                      .+|.+++|+|++..+-...+
T Consensus       139 taDlilMvLDatk~e~qr~~  158 (364)
T KOG1486|consen  139 TADLILMVLDATKSEDQREI  158 (364)
T ss_pred             cccEEEEEecCCcchhHHHH
Confidence            89999999999976554433

>TIGR00092 GTP-binding protein YchF

Probab=98.78  E-value=2.5e-08  Score=74.27  Aligned_cols=83  Identities=19%  Similarity=0.076  Sum_probs=60.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCe---------------EEEEEEEeCCCccc---
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGK---------------KMKLAIWDTAGQER---   73 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~---   73 (154)
                      +++.++|.|++|||||+|.+.+...  ...+|.++.......+.+.+.               ...+.+.|.||-..   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            6899999999999999999998876  234466655555556655442               23578899999432   


Q ss_pred             ----ccccccccccCccEEEEEEECCC
Q 031704           74 ----FRTLTSSYYRGAQGIIMVYDVTR   96 (154)
Q Consensus        74 ----~~~~~~~~~~~~~~~v~v~d~~~   96 (154)
                          ........++++|++++|++..+
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~  109 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCFE  109 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence                23345556889999999999853

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=1.3e-08  Score=80.57  Aligned_cols=114  Identities=22%  Similarity=0.285  Sum_probs=78.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEE--EEE------------CC----eEEEEEEEeCCCccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKH--VAL------------GG----KKMKLAIWDTAGQER   73 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~--~~~------------~~----~~~~~~i~D~~g~~~   73 (154)
                      +.+=++|+|+...|||-|+..+-+...+. ....|++..+..  ++.            ++    +.--+.++||||++.
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqe-geaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs  552 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQE-GEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES  552 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhcccccc-ccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence            44668899999999999999887655421 222222222221  111            11    112377899999999


Q ss_pred             ccccccccccCccEEEEEEECCCc---chHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           74 FRTLTSSYYRGAQGIIMVYDVTRR---DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        74 ~~~~~~~~~~~~~~~v~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      |..+..+...-||.+|+|+|+...   .+.+.+     ++++    ..+.|+||.+||+|....+
T Consensus       553 FtnlRsrgsslC~~aIlvvdImhGlepqtiESi-----~lLR----~rktpFivALNKiDRLYgw  608 (1064)
T KOG1144|consen  553 FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI-----NLLR----MRKTPFIVALNKIDRLYGW  608 (1064)
T ss_pred             hhhhhhccccccceEEEEeehhccCCcchhHHH-----HHHH----hcCCCeEEeehhhhhhccc
Confidence            999999999999999999999863   333333     2333    3488999999999975444

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=9.1e-08  Score=70.11  Aligned_cols=117  Identities=17%  Similarity=0.192  Sum_probs=72.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC---CCCCC---cceeeeEEE--EEEE-------CCeEEEEEEEeCCCcccccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF---EELSP---TIGVDFKIK--HVAL-------GGKKMKLAIWDTAGQERFRT   76 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~---~~~~~---~~~~~~~~~--~~~~-------~~~~~~~~i~D~~g~~~~~~   76 (154)
                      ..+++.++|...+|||||.+++..-..   -+-.|   ..+++....  .+.+       .++...+.++|+||+.....
T Consensus         6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR   85 (522)
T KOG0461|consen    6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR   85 (522)
T ss_pred             ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence            348999999999999999999864322   01111   222222221  1221       24567889999999987766


Q ss_pred             cccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        77 ~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      ......+-.|..++|+|+.....-..+.-+..-.      .-....++|.||+|+..+
T Consensus        86 tiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~------~~c~klvvvinkid~lpE  137 (522)
T KOG0461|consen   86 TIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGE------LLCKKLVVVINKIDVLPE  137 (522)
T ss_pred             HHHhhhheeeeeeEEEehhcccccccchhhhhhh------hhccceEEEEeccccccc
Confidence            6665556679999999998644333222211111      112336888999998654

>cd01855 YqeH YqeH

Probab=98.76  E-value=1.9e-08  Score=68.90  Aligned_cols=54  Identities=28%  Similarity=0.469  Sum_probs=39.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC--------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF--------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG   70 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   70 (154)
                      .+++++|.+|+|||||+|+|.+...        .......|.|.....+.++.   .+.++||||
T Consensus       128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence            5799999999999999999997543        12233445555555555543   468999998

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.76  E-value=3.4e-08  Score=71.96  Aligned_cols=85  Identities=22%  Similarity=0.206  Sum_probs=64.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECC---------------eEEEEEEEeCCCcc---
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGG---------------KKMKLAIWDTAGQE---   72 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~g~~---   72 (154)
                      ..+++.++|.|++|||||+|.+..... +...|..+++.....+.+..               .+..++++|++|-.   
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA   98 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA   98 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence            457999999999999999999999887 67778888776666655422               24569999998832   


Q ss_pred             ----cccccccccccCccEEEEEEECCC
Q 031704           73 ----RFRTLTSSYYRGAQGIIMVYDVTR   96 (154)
Q Consensus        73 ----~~~~~~~~~~~~~~~~v~v~d~~~   96 (154)
                          ..-......+|.+|+++.|.++..
T Consensus        99 s~G~GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen   99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             ccCcCchHHHHHhhhhccceeEEEEecC
Confidence                233345556889999999998753

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.75  E-value=3.6e-08  Score=71.47  Aligned_cols=140  Identities=14%  Similarity=0.087  Sum_probs=81.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------------------Cccee----eeEEEE-EEEC----CeEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-------------------PTIGV----DFKIKH-VALG----GKKMK   62 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~-------------------~~~~~----~~~~~~-~~~~----~~~~~   62 (154)
                      +..++|-++|...-|||||..++.+--....+                   ....+    .+.... .+..    .-...
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            45699999999999999999998752110000                   00000    000000 0001    11236


Q ss_pred             EEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh--hhh
Q 031704           63 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL--FLS  140 (154)
Q Consensus        63 ~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~--~~~  140 (154)
                      +.|.|.||++-.-..+....--.|++++|+.++.+.-.-+..+ .+--+...   .-..++++-||+||.++++.  ...
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~E-Hl~AleIi---gik~iiIvQNKIDlV~~E~AlE~y~  163 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTRE-HLMALEII---GIKNIIIVQNKIDLVSRERALENYE  163 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHH-HHHHHhhh---ccceEEEEecccceecHHHHHHHHH
Confidence            8889999998766655544444699999999986433323233 11112211   12358999999999877655  335


Q ss_pred             hhhhhhhc------cccccC
Q 031704          141 GFWHFLLS------KFYCSS  154 (154)
Q Consensus       141 ~~~~~~~~------~~~~~S  154 (154)
                      ++.+|..+      .++|||
T Consensus       164 qIk~FvkGt~Ae~aPIIPiS  183 (415)
T COG5257         164 QIKEFVKGTVAENAPIIPIS  183 (415)
T ss_pred             HHHHHhcccccCCCceeeeh
Confidence            55555333      346665

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.73  E-value=6e-08  Score=69.03  Aligned_cols=62  Identities=19%  Similarity=0.206  Sum_probs=50.4

Q ss_pred             ccccccccccccCccEEEEEEECCCcc-hHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhh
Q 031704           72 ERFRTLTSSYYRGAQGIIMVYDVTRRD-TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLF  138 (154)
Q Consensus        72 ~~~~~~~~~~~~~~~~~v~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~  138 (154)
                      ++++.+.+.+++++|++++|+|++++. ++..+.. |+..+..    .++|+++|+||+||.+++++.
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r-~l~~~~~----~~i~~vIV~NK~DL~~~~~~~   86 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDR-FLVVAEA----QNIEPIIVLNKIDLLDDEDME   86 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHH-HHHHHHH----CCCCEEEEEECcccCCCHHHH
Confidence            667778888899999999999999877 7888776 7765543    478999999999997665543

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.72  E-value=3.7e-08  Score=65.28  Aligned_cols=56  Identities=23%  Similarity=0.300  Sum_probs=39.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCC
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG   70 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   70 (154)
                      ...+++++|.+|+||||++|.+.+..........+.|........+   ..+.++||||
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtPG  154 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---CCEEEEECCC
Confidence            4578999999999999999999987653333333333333344443   2478899998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.71  E-value=1.6e-08  Score=73.32  Aligned_cols=119  Identities=17%  Similarity=0.135  Sum_probs=75.9

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc---------cccccccc
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ---------ERFRTLTS   79 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~---------~~~~~~~~   79 (154)
                      .....-|+++|-++||||||++.|.+... +...-..+.+.........+ ...+.+.||.|.         ..|+....
T Consensus       175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lps-g~~vlltDTvGFisdLP~~LvaAF~ATLe  253 (410)
T KOG0410|consen  175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPS-GNFVLLTDTVGFISDLPIQLVAAFQATLE  253 (410)
T ss_pred             cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCC-CcEEEEeechhhhhhCcHHHHHHHHHHHH
Confidence            34556899999999999999999995554 44444444444444443332 224667799982         22333222


Q ss_pred             ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCC----cEEEEEeCCCCC
Q 031704           80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC----IKLLVGNKVDKV  132 (154)
Q Consensus        80 ~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~----~~ivv~nK~Dl~  132 (154)
                      . ...+|.++.|.|++.++.-+.... ....+... ..++.    .++=|-||+|..
T Consensus       254 e-VaeadlllHvvDiShP~ae~q~e~-Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e  307 (410)
T KOG0410|consen  254 E-VAEADLLLHVVDISHPNAEEQRET-VLHVLNQI-GVPSEPKLQNMIEVDNKIDYE  307 (410)
T ss_pred             H-HhhcceEEEEeecCCccHHHHHHH-HHHHHHhc-CCCcHHHHhHHHhhccccccc
Confidence            2 457899999999999886555444 44444444 22222    456678888875

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.67  E-value=7e-07  Score=62.78  Aligned_cols=88  Identities=17%  Similarity=0.109  Sum_probs=52.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCcceee--eEEEEEEEC-CeEEEEEEEeCCCcccccc------ccc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSD--TFEELSPTIGVD--FKIKHVALG-GKKMKLAIWDTAGQERFRT------LTS   79 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~--~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~i~D~~g~~~~~~------~~~   79 (154)
                      ....-|+|+|++++|||+|+|++++.  .+........+|  .+....+.. +....+.++||+|......      ...
T Consensus         5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~   84 (224)
T cd01851           5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL   84 (224)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence            34567899999999999999999998  663222212222  222222221 2346789999999543322      122


Q ss_pred             ccccC--ccEEEEEEECCCcc
Q 031704           80 SYYRG--AQGIIMVYDVTRRD   98 (154)
Q Consensus        80 ~~~~~--~~~~v~v~d~~~~~   98 (154)
                      ..+..  ++++|+..+.....
T Consensus        85 ~~l~~llss~~i~n~~~~~~~  105 (224)
T cd01851          85 FALATLLSSVLIYNSWETILG  105 (224)
T ss_pred             HHHHHHHhCEEEEeccCcccH
Confidence            22333  68787777765433

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.62  E-value=9e-08  Score=68.07  Aligned_cols=117  Identities=21%  Similarity=0.142  Sum_probs=73.4

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCC----------cccccc
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG----------QERFRT   76 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~   76 (154)
                      +..++++++++|.+++|||+|+|.++..+.  ....+..+.+.....+.++.   ++.+.|.||          .+++..
T Consensus       132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~  208 (320)
T KOG2486|consen  132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDK  208 (320)
T ss_pred             CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhH
Confidence            356779999999999999999999988766  23334666666666666654   566779999          123334


Q ss_pred             cccccccCc---cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           77 LTSSYYRGA---QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        77 ~~~~~~~~~---~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      ....++.+.   -.+.++.|++-+-  ........+.    ++..+.|..+|.||||....
T Consensus       209 ~t~~Y~leR~nLv~~FLLvd~sv~i--~~~D~~~i~~----~ge~~VP~t~vfTK~DK~k~  263 (320)
T KOG2486|consen  209 FTKSYLLERENLVRVFLLVDASVPI--QPTDNPEIAW----LGENNVPMTSVFTKCDKQKK  263 (320)
T ss_pred             hHHHHHHhhhhhheeeeeeeccCCC--CCCChHHHHH----HhhcCCCeEEeeehhhhhhh
Confidence            444444433   2344444544321  1111111122    23458899999999998533

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=98.61  E-value=4.8e-07  Score=69.73  Aligned_cols=86  Identities=17%  Similarity=0.313  Sum_probs=62.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEEC--CeEEEEEEEeCCCcccccccccccccC----ccE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALG--GKKMKLAIWDTAGQERFRTLTSSYYRG----AQG   87 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~----~~~   87 (154)
                      -.|+|+|..++|||||+.+|.+.+.  ..++.+.+|....+.-.  .....+.+|-..|...+..+....+..    --+
T Consensus        26 k~vlvlG~~~~GKttli~~L~~~e~--~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~  103 (472)
T PF05783_consen   26 KSVLVLGDKGSGKTTLIARLQGIED--PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTL  103 (472)
T ss_pred             ceEEEEeCCCCchHHHHHHhhccCC--CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceE
Confidence            5899999999999999999986553  34555555554443222  234578999998877777777666653    268


Q ss_pred             EEEEEECCCcchHH
Q 031704           88 IIMVYDVTRRDTFT  101 (154)
Q Consensus        88 ~v~v~d~~~~~s~~  101 (154)
                      +|+|+|.+.+..+-
T Consensus       104 vvIvlDlS~PW~~~  117 (472)
T PF05783_consen  104 VVIVLDLSKPWNIM  117 (472)
T ss_pred             EEEEecCCChHHHH
Confidence            99999999877654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.60  E-value=9.1e-09  Score=76.94  Aligned_cols=122  Identities=18%  Similarity=0.239  Sum_probs=92.9

Q ss_pred             cCCCceeEEEEEEcCCCCCHHHHHHHHhcCC--------CC---------CCCCcceeeeEEEEEEECCeEEEEEEEeCC
Q 031704            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDT--------FE---------ELSPTIGVDFKIKHVALGGKKMKLAIWDTA   69 (154)
Q Consensus         7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~--------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   69 (154)
                      .+...+..+|.++..-.+||||...|++.-.        ..         ......|++..+..+.++=+...++++|||
T Consensus        31 ~p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtp  110 (753)
T KOG0464|consen   31 NPAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTP  110 (753)
T ss_pred             CCchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCC
Confidence            3445567789999999999999999986421        10         111234677888888888888899999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        70 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      |+.+|+-...++++--|+++.|||.+-.-.-..+.. |.+.     .+.++|-+.+.||.|...+
T Consensus       111 ghvdf~leverclrvldgavav~dasagve~qtltv-wrqa-----dk~~ip~~~finkmdk~~a  169 (753)
T KOG0464|consen  111 GHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTV-WRQA-----DKFKIPAHCFINKMDKLAA  169 (753)
T ss_pred             CcceEEEEHHHHHHHhcCeEEEEeccCCcccceeee-ehhc-----cccCCchhhhhhhhhhhhh
Confidence            999999989999999999999999886544333333 6543     4557889999999998544

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=6.4e-07  Score=70.55  Aligned_cols=119  Identities=15%  Similarity=0.216  Sum_probs=69.9

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCC-CCcceee----------------------------------------
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EEL-SPTIGVD----------------------------------------   48 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~-~~~~~~~----------------------------------------   48 (154)
                      ....||++.|..++||||++|+++-++. +.. .+++.+-                                        
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            3558999999999999999999986544 211 1111000                                        


Q ss_pred             --eEEEEEEECCeE-----EEEEEEeCCCcc---cccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCC
Q 031704           49 --FKIKHVALGGKK-----MKLAIWDTAGQE---RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ  118 (154)
Q Consensus        49 --~~~~~~~~~~~~-----~~~~i~D~~g~~---~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  118 (154)
                        .....+..+.+.     -.+.++|.||-.   ....-...+...+|++|+|.++.+..+..+ .+ ++....    ..
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~-Ff~~vs----~~  260 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQ-FFHKVS----EE  260 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HH-HHHHhh----cc
Confidence              000011111110     137888999943   344445566778999999998776444322 33 222222    22


Q ss_pred             CCcEEEEEeCCCCCCch
Q 031704          119 DCIKLLVGNKVDKVCPW  135 (154)
Q Consensus       119 ~~~~ivv~nK~Dl~~~~  135 (154)
                      +..+.++-||+|.....
T Consensus       261 KpniFIlnnkwDasase  277 (749)
T KOG0448|consen  261 KPNIFILNNKWDASASE  277 (749)
T ss_pred             CCcEEEEechhhhhccc
Confidence            45567778899997553

>PRK12289 GTPase RsgA; Reviewed

Probab=98.58  E-value=1.1e-07  Score=70.86  Aligned_cols=52  Identities=27%  Similarity=0.360  Sum_probs=35.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCCCcce-------eeeEEEEEEECCeEEEEEEEeCCC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSDTFEELSPTIG-------VDFKIKHVALGGKKMKLAIWDTAG   70 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~D~~g   70 (154)
                      ++++|++|+|||||+|+|++..........+       .|.....+.+.+..   .++||||
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG  233 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPG  233 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCC
Confidence            7999999999999999999765422222222       34444555554322   5789999

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.58  E-value=4.5e-07  Score=68.22  Aligned_cols=118  Identities=17%  Similarity=0.095  Sum_probs=83.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      -|+..|.---|||||+..+.+...  .......|++.....++..-....+.|+|.||++++-......+...|.+++|+
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV   81 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV   81 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence            356678888999999999998776  334445566666666666655568899999999998888888888899999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      +.++.-.......  ...+...   .....++|+||+|..++.+.
T Consensus        82 ~~deGl~~qtgEh--L~iLdll---gi~~giivltk~D~~d~~r~  121 (447)
T COG3276          82 AADEGLMAQTGEH--LLILDLL---GIKNGIIVLTKADRVDEARI  121 (447)
T ss_pred             eCccCcchhhHHH--HHHHHhc---CCCceEEEEeccccccHHHH
Confidence            9965433222222  2222222   22346899999999876533

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.57  E-value=1.8e-07  Score=69.17  Aligned_cols=62  Identities=16%  Similarity=0.090  Sum_probs=37.4

Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      +.+.|+||+|.-.-.   ......+|.++++.+....+......    ..+...      .-++|.||+|+....
T Consensus       149 ~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k----~gi~E~------aDIiVVNKaDl~~~~  210 (332)
T PRK09435        149 YDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIK----KGIMEL------ADLIVINKADGDNKT  210 (332)
T ss_pred             CCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHH----hhhhhh------hheEEeehhcccchh
Confidence            568899999965222   12456799999997644443332221    112111      137999999997543

>PRK12288 GTPase RsgA; Reviewed

Probab=98.56  E-value=1.6e-07  Score=70.02  Aligned_cols=56  Identities=20%  Similarity=0.296  Sum_probs=36.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCCCc-------ceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 031704           16 LLLIGDSGVGKSTLLLSFTSDTFEELSPT-------IGVDFKIKHVALGGKKMKLAIWDTAGQERF   74 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (154)
                      ++++|.+|+|||||+|+|++.........       .+.|.....+.+.+..   .++||||...+
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~  270 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREF  270 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCcc
Confidence            68999999999999999998755211111       1233444445554322   47899995443

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.54  E-value=1.4e-06  Score=57.50  Aligned_cols=113  Identities=21%  Similarity=0.269  Sum_probs=65.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCC-Ccc------------------
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTA-GQE------------------   72 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-g~~------------------   72 (154)
                      ..+||.+-|+||+||||++.++...--.....-.  .+.+.++.-+++..-|.+.|+. |..                  
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg--Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V   81 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG--GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGV   81 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCceee--eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEe
Confidence            4589999999999999999988643221111112  3555666667777778888877 311                  


Q ss_pred             ---ccc----ccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCC
Q 031704           73 ---RFR----TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK  131 (154)
Q Consensus        73 ---~~~----~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl  131 (154)
                         .+.    .....+++.+|++++  |---+  .+.....+.+.+... .+.+.|++.+.++.+.
T Consensus        82 ~v~~le~i~~~al~rA~~~aDvIII--DEIGp--MElks~~f~~~ve~v-l~~~kpliatlHrrsr  142 (179)
T COG1618          82 NVEGLEEIAIPALRRALEEADVIII--DEIGP--MELKSKKFREAVEEV-LKSGKPLIATLHRRSR  142 (179)
T ss_pred             eHHHHHHHhHHHHHHHhhcCCEEEE--ecccc--hhhccHHHHHHHHHH-hcCCCcEEEEEecccC
Confidence               111    112333445566554  43222  232233244555554 4567788888886643

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.52  E-value=4.6e-07  Score=77.02  Aligned_cols=111  Identities=20%  Similarity=0.176  Sum_probs=64.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC-----CCc--ceeeeEEEEEEECCeEEEEEEEeCCCccc--------cccccc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-----SPT--IGVDFKIKHVALGGKKMKLAIWDTAGQER--------FRTLTS   79 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~   79 (154)
                      =.+|+|++|+||||++++- +.+++-.     ...  .+.+.. ..+.+.++   ..++||+|..-        ....|.
T Consensus       113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~  187 (1169)
T TIGR03348       113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWL  187 (1169)
T ss_pred             CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecCC---EEEEcCCCccccCCCcccccHHHHH
Confidence            3688999999999999987 3334211     111  111221 23334443   45789999321        122233


Q ss_pred             ccc---------cCccEEEEEEECCCcch-----H----HHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           80 SYY---------RGAQGIIMVYDVTRRDT-----F----TNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        80 ~~~---------~~~~~~v~v~d~~~~~s-----~----~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                      .++         +-.+++|+++|+.+.-.     .    ..++. .++.+... ..-..|+.|+.||+|+.
T Consensus       188 ~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~-rl~el~~~-lg~~~PVYvv~Tk~Dll  256 (1169)
T TIGR03348       188 GFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQ-RLQELREQ-LGARFPVYLVLTKADLL  256 (1169)
T ss_pred             HHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHH-HHHHHHHH-hCCCCCEEEEEecchhh
Confidence            332         23699999999875321     1    12222 23333333 34578999999999986

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.50  E-value=1.4e-07  Score=62.62  Aligned_cols=56  Identities=29%  Similarity=0.351  Sum_probs=33.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC---CCCC----cceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFE---ELSP----TIGVDFKIKHVALGGKKMKLAIWDTAGQER   73 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   73 (154)
                      .++++|++|||||||+|.|+.....   ....    ..+.|.....+.+++..   .++||||...
T Consensus        37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~   99 (161)
T PF03193_consen   37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRS   99 (161)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCc
Confidence            6789999999999999999987431   1111    11223334455554433   5779999543

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.48  E-value=3e-07  Score=65.50  Aligned_cols=55  Identities=25%  Similarity=0.332  Sum_probs=35.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC---CC----cceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEEL---SP----TIGVDFKIKHVALGGKKMKLAIWDTAGQER   73 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   73 (154)
                      .++++|++|+|||||+|++.+......   ..    ..+.|.....+.+.+    -.++||||-..
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~  183 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNE  183 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccc
Confidence            678999999999999999998654211   11    112333444444432    26889999644

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK13796 GTPase YqeH; Provisional

Probab=98.47  E-value=2.9e-07  Score=69.13  Aligned_cols=55  Identities=24%  Similarity=0.307  Sum_probs=39.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-----CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-----EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ   71 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (154)
                      .++.++|.+|+|||||+|+|+....     .......|.|.....+.+++.   ..++||||-
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi  220 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGI  220 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCc
Confidence            4799999999999999999986432     223444555566666666543   368899994

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.46  E-value=4.7e-07  Score=67.93  Aligned_cols=56  Identities=23%  Similarity=0.374  Sum_probs=39.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-----CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-----EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE   72 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   72 (154)
                      .+++++|.+|+|||||+|++++...     ...+...+.|.....+.+++.   +.++||||-.
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~  215 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGII  215 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCC
Confidence            4899999999999999999997532     233444555555556655332   4689999943

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.45  E-value=1.1e-06  Score=64.35  Aligned_cols=122  Identities=19%  Similarity=0.097  Sum_probs=84.8

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcC----------CC-----CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSD----------TF-----EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF   74 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~----------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (154)
                      ....++|--+|...-|||||.-.+..-          ++     .......|++....++.+.....++-=.|+||+.+|
T Consensus        51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY  130 (449)
T KOG0460|consen   51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY  130 (449)
T ss_pred             CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence            345588999999999999999887531          11     122345577777777776655556666799999998


Q ss_pred             cccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        75 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      ...+...-.+.|++|+|..++|...-+.-..+   ++.+...  -..+++..||.|+.++.+
T Consensus       131 IKNMItGaaqMDGaILVVaatDG~MPQTrEHl---LLArQVG--V~~ivvfiNKvD~V~d~e  187 (449)
T KOG0460|consen  131 IKNMITGAAQMDGAILVVAATDGPMPQTREHL---LLARQVG--VKHIVVFINKVDLVDDPE  187 (449)
T ss_pred             HHHhhcCccccCceEEEEEcCCCCCcchHHHH---HHHHHcC--CceEEEEEecccccCCHH
Confidence            87777777789999999999996554333331   2222212  246899999999995443

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.45  E-value=1.8e-07  Score=72.11  Aligned_cols=113  Identities=23%  Similarity=0.356  Sum_probs=83.9

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      -..+|+.|+|..++|||+|+++++.+.+.......+. ...+++.+++....+.+.|..|...     ..+-.+.|++||
T Consensus        28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~-~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf  101 (749)
T KOG0705|consen   28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG-RFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF  101 (749)
T ss_pred             cchhheeeeecccCCceeeeeeeccceeccccCCcCc-cceeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence            3568999999999999999999999999444444433 3345666777888888888887332     334567899999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCC
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD  130 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D  130 (154)
                      |+.+.+..+++.+.. +.-.+..+..-..+|.++++++.=
T Consensus       102 vf~~~d~~s~q~v~~-l~~~l~~~r~r~~i~l~lvgtqd~  140 (749)
T KOG0705|consen  102 VFSVEDEQSFQAVQA-LAHEMSSYRNISDLPLILVGTQDH  140 (749)
T ss_pred             EEEeccccCHHHHHH-HHhhcccccccccchHHhhcCcch
Confidence            999999999998877 544544443455678888888643

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.44  E-value=8.9e-07  Score=64.89  Aligned_cols=63  Identities=17%  Similarity=0.088  Sum_probs=37.6

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      .+.+.|+||+|.-.   .....+..+|.++++-...   +-+.+.. ....+      ...|.++|+||+|+....
T Consensus       126 g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~---~~~el~~-~~~~l------~~~~~ivv~NK~Dl~~~~  188 (300)
T TIGR00750       126 GYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPG---TGDDLQG-IKAGL------MEIADIYVVNKADGEGAT  188 (300)
T ss_pred             CCCEEEEeCCCCch---hhhHHHHhhceEEEEecCC---ccHHHHH-HHHHH------hhhccEEEEEcccccchh
Confidence            46688999998431   1122456678888875433   2233333 22222      245679999999997654

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.43  E-value=1.2e-06  Score=58.41  Aligned_cols=64  Identities=14%  Similarity=0.138  Sum_probs=37.2

Q ss_pred             EEEEEEeCCCcccccccccc--------cccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCC
Q 031704           61 MKLAIWDTAGQERFRTLTSS--------YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK  131 (154)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~--------~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl  131 (154)
                      ....++|+||...-......        ..-+.+.++++.|+.+..........+..++...       =++|.||+|+
T Consensus        87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a-------d~ivlnk~dl  158 (158)
T cd03112          87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA-------DRILLNKTDL  158 (158)
T ss_pred             CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC-------CEEEEecccC
Confidence            45678899996433222211        1234799999999765433221123244444432       2679999996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.42  E-value=5.1e-07  Score=69.04  Aligned_cols=57  Identities=19%  Similarity=0.271  Sum_probs=48.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ   71 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (154)
                      ..+.|.+||-||+||||.||.|.+.+-...+.|.|-|.+...+.+..   .+-++|+||-
T Consensus       313 ~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~---~v~LCDCPGL  369 (562)
T KOG1424|consen  313 DVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP---SVCLCDCPGL  369 (562)
T ss_pred             ceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC---CceecCCCCc
Confidence            36899999999999999999999999878888888777777776654   4678899994

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.40  E-value=3.7e-08  Score=68.52  Aligned_cols=83  Identities=17%  Similarity=0.153  Sum_probs=59.7

Q ss_pred             EEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECC----------CcchHHHHHHHHHHHHhhhcCCCCCc
Q 031704           52 KHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT----------RRDTFTNLADIWAKEIDLYSTNQDCI  121 (154)
Q Consensus        52 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~  121 (154)
                      .+++++...+.+.+.|.+|+...+..|..++.+...++++..++          +....++... ++..+..++.-.+.+
T Consensus       190 ~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkA-LFrTIi~yPWF~nss  268 (359)
T KOG0085|consen  190 IEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSS  268 (359)
T ss_pred             eecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHH-HHHHHhccccccCCc
Confidence            34445556677889999999888888888888776666655443          2334455555 666666777788999


Q ss_pred             EEEEEeCCCCCCch
Q 031704          122 KLLVGNKVDKVCPW  135 (154)
Q Consensus       122 ~ivv~nK~Dl~~~~  135 (154)
                      +|+.+||.|+..+.
T Consensus       269 VIlFLNKkDlLEek  282 (359)
T KOG0085|consen  269 VILFLNKKDLLEEK  282 (359)
T ss_pred             eEEEechhhhhhhh
Confidence            99999999997553

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.34  E-value=8.2e-07  Score=62.92  Aligned_cols=75  Identities=19%  Similarity=0.181  Sum_probs=52.1

Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcc----------hHHHHHHHHHHHHhhhcCCCCCcEEEEEeC
Q 031704           59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD----------TFTNLADIWAKEIDLYSTNQDCIKLLVGNK  128 (154)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK  128 (154)
                      ..+.++++|.+|+.+.+..|..++....++++|...++..          .+.+... +++.+=+......+.+|+.+||
T Consensus       200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~-LFksiWnNRwL~tisvIlFLNK  278 (379)
T KOG0099|consen  200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALN-LFKSIWNNRWLRTISVILFLNK  278 (379)
T ss_pred             cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHH-HHHHHHhhhHHhhhheeEEecH
Confidence            4567999999999999999999999999999999887522          1222222 1111111112335679999999


Q ss_pred             CCCCCc
Q 031704          129 VDKVCP  134 (154)
Q Consensus       129 ~Dl~~~  134 (154)
                      .|+..+
T Consensus       279 qDllae  284 (379)
T KOG0099|consen  279 QDLLAE  284 (379)
T ss_pred             HHHHHH
Confidence            999644

>PRK00098 GTPase RsgA; Reviewed

Probab=98.30  E-value=1.8e-06  Score=63.25  Aligned_cols=56  Identities=30%  Similarity=0.312  Sum_probs=35.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcc-------eeeeEEEEEEECCeEEEEEEEeCCCccc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTI-------GVDFKIKHVALGGKKMKLAIWDTAGQER   73 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~D~~g~~~   73 (154)
                      .++++|++|+|||||+|.+++..........       ..|.....+.+++.   ..++||||...
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~  228 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS  228 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence            5889999999999999999976542211111       12333333344332   36789999643

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.25  E-value=2.8e-06  Score=61.89  Aligned_cols=59  Identities=29%  Similarity=0.287  Sum_probs=37.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------CcceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELS-------PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR   75 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   75 (154)
                      -.++++|++|+|||||+|.+++.......       ...+.|.....+.+.+.   ..++||||...+.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~  227 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG  227 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence            46899999999999999999986542111       11112333344444322   2588999986543

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=98.24  E-value=8.6e-06  Score=59.55  Aligned_cols=99  Identities=17%  Similarity=0.289  Sum_probs=69.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEE--CCeEEEEEEEeCCCcccccccccccccCc----cE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVAL--GGKKMKLAIWDTAGQERFRTLTSSYYRGA----QG   87 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~----~~   87 (154)
                      -+|+|+|..++|||||+.+|.+.+  .+.+..+..|....+.-  .+...++.+|-.-|+.....+....+...    ..
T Consensus        53 k~VlvlGdn~sGKtsLi~klqg~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl  130 (473)
T KOG3905|consen   53 KNVLVLGDNGSGKTSLISKLQGSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL  130 (473)
T ss_pred             CeEEEEccCCCchhHHHHHhhccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence            489999999999999999999877  44555555554444322  12345788898888877777666655533    57


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhh
Q 031704           88 IIMVYDVTRRDTFTNLADIWAKEIDLY  114 (154)
Q Consensus        88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~  114 (154)
                      ++++.|++++..+.+..+.|..-++++
T Consensus       131 viltasms~Pw~~lesLqkWa~Vl~eh  157 (473)
T KOG3905|consen  131 VILTASMSNPWTLLESLQKWASVLREH  157 (473)
T ss_pred             EEEEEecCCcHHHHHHHHHHHHHHHHH
Confidence            888999999966544444487666554

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.24  E-value=2.4e-06  Score=61.08  Aligned_cols=122  Identities=23%  Similarity=0.393  Sum_probs=74.1

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-C--C--CcceeeeEEEEEEECCeEEEEEEEeCCCc-------cccccc
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-L--S--PTIGVDFKIKHVALGGKKMKLAIWDTAGQ-------ERFRTL   77 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~~-~--~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~~~~~   77 (154)
                      ..-.++|+.+|.+|-|||||+..|++-++.. .  .  |.......+....-.+-.+++.++||.|-       +.|+.+
T Consensus        39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~i  118 (406)
T KOG3859|consen   39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPI  118 (406)
T ss_pred             cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchH
Confidence            3456899999999999999999999988721 1  1  22222222223333566788999999991       111111


Q ss_pred             -------cccc-------------c--cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           78 -------TSSY-------------Y--RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        78 -------~~~~-------------~--~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                             ...+             +  .+.++|++-+..+. .++..+.....+.+.     ....||-|.-|.|-+...
T Consensus       119 VdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Ld-----skVNIIPvIAKaDtisK~  192 (406)
T KOG3859|consen  119 VDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLD-----SKVNIIPVIAKADTISKE  192 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHh-----hhhhhHHHHHHhhhhhHH
Confidence                   1111             1  24688888887664 556665543333332     345567777888876555


Q ss_pred             hh
Q 031704          136 RL  137 (154)
Q Consensus       136 ~~  137 (154)
                      +.
T Consensus       193 eL  194 (406)
T KOG3859|consen  193 EL  194 (406)
T ss_pred             HH
Confidence            43

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.23  E-value=1.7e-06  Score=67.52  Aligned_cols=120  Identities=18%  Similarity=0.234  Sum_probs=81.9

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-----C------------CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-----E------------ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER   73 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-----~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   73 (154)
                      ++.-+|-++..--+||||+.++.+.-.-     .            +.....|++......+..-+.+.++++||||+-+
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD  116 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD  116 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence            4667888888899999999999763211     0            0011234444444433333477899999999999


Q ss_pred             ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        74 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      |.-...+.++--|++|++++....-.-.. ...|.+. .++    +.|.+...||.|.-.+..
T Consensus       117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt-~tV~rQ~-~ry----~vP~i~FiNKmDRmGa~~  173 (721)
T KOG0465|consen  117 FTFEVERALRVLDGAVLVLDAVAGVESQT-ETVWRQM-KRY----NVPRICFINKMDRMGASP  173 (721)
T ss_pred             EEEEehhhhhhccCeEEEEEcccceehhh-HHHHHHH-Hhc----CCCeEEEEehhhhcCCCh
Confidence            99888889999999999999765332222 2224433 333    789999999999865543

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.18  E-value=4.3e-06  Score=60.61  Aligned_cols=57  Identities=32%  Similarity=0.387  Sum_probs=36.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC---CCCC----CcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF---EELS----PTIGVDFKIKHVALGGKKMKLAIWDTAGQERF   74 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (154)
                      -.+++|.+|+|||||+|+|.....   .+.+    ...+.|.....+.+++..   .+.||||...+
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~  229 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL  229 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence            467889999999999999987433   1111    112234445556664322   46799995443

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.12  E-value=7.4e-05  Score=56.66  Aligned_cols=122  Identities=20%  Similarity=0.236  Sum_probs=69.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-------------CCCCC--cceeeeEE----------EEEEE-CCeEEEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-------------EELSP--TIGVDFKI----------KHVAL-GGKKMKLAI   65 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-------------~~~~~--~~~~~~~~----------~~~~~-~~~~~~~~i   65 (154)
                      ..+-|.|+||..+|||||+.||...-.             .+.-|  ..|-+..+          ..+.+ ++-.+++.+
T Consensus        16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL   95 (492)
T PF09547_consen   16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL   95 (492)
T ss_pred             CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence            457899999999999999999964211             11111  11212222          22223 456789999


Q ss_pred             EeCCCc--------c-----c------cccc----------ccccccC-c-cEEEEEEECC----CcchHHHHHHHHHHH
Q 031704           66 WDTAGQ--------E-----R------FRTL----------TSSYYRG-A-QGIIMVYDVT----RRDTFTNLADIWAKE  110 (154)
Q Consensus        66 ~D~~g~--------~-----~------~~~~----------~~~~~~~-~-~~~v~v~d~~----~~~s~~~~~~~~~~~  110 (154)
                      +|+.|-        .     +      |..-          ....++. + =++|+--|-+    .++.+..+.+...+.
T Consensus        96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E  175 (492)
T PF09547_consen   96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE  175 (492)
T ss_pred             EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence            999980        0     0      1100          1122222 2 3555554432    244555555545556


Q ss_pred             HhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704          111 IDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus       111 ~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      +...    ++|+++++|-.+-..+...
T Consensus       176 Lk~i----gKPFvillNs~~P~s~et~  198 (492)
T PF09547_consen  176 LKEI----GKPFVILLNSTKPYSEETQ  198 (492)
T ss_pred             HHHh----CCCEEEEEeCCCCCCHHHH
Confidence            6554    8899999998887665544

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.10  E-value=2.1e-05  Score=60.10  Aligned_cols=113  Identities=15%  Similarity=0.117  Sum_probs=60.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHh------cCCC----CCC-CC-----------cceeeeEEEEEEEC-------------
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFT------SDTF----EEL-SP-----------TIGVDFKIKHVALG-------------   57 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~------~~~~----~~~-~~-----------~~~~~~~~~~~~~~-------------   57 (154)
                      ..-|+++|++|+||||++..|.      +.+.    .+. .+           ..+..+.......+             
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~  179 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK  179 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence            4678999999999999998875      2221    111 10           01111111000000             


Q ss_pred             CeEEEEEEEeCCCcccccccc----ccc--ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCC
Q 031704           58 GKKMKLAIWDTAGQERFRTLT----SSY--YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK  131 (154)
Q Consensus        58 ~~~~~~~i~D~~g~~~~~~~~----~~~--~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl  131 (154)
                      ...+.+.++||+|........    ...  ..+.+.+++|.|++....-.....    .+...    -.+--+|+||.|.
T Consensus       180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~----~F~~~----~~~~g~IlTKlD~  251 (429)
T TIGR01425       180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAK----AFKDS----VDVGSVIITKLDG  251 (429)
T ss_pred             hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHH----HHHhc----cCCcEEEEECccC
Confidence            024678999999954332211    111  224688999999876433222222    22211    1245688999998


Q ss_pred             CC
Q 031704          132 VC  133 (154)
Q Consensus       132 ~~  133 (154)
                      ..
T Consensus       252 ~a  253 (429)
T TIGR01425       252 HA  253 (429)
T ss_pred             CC
Confidence            43

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.09  E-value=1.3e-05  Score=59.72  Aligned_cols=121  Identities=22%  Similarity=0.214  Sum_probs=75.6

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-----------------c-------ceeeeEEEEEEE--------
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-----------------T-------IGVDFKIKHVAL--------   56 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~-----------------~-------~~~~~~~~~~~~--------   56 (154)
                      ...-.++++++|.-.+|||||+--|..+...+...                 +       .|.+..-+.+.+        
T Consensus       163 QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEE  242 (591)
T KOG1143|consen  163 QQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEE  242 (591)
T ss_pred             ccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHH
Confidence            34467999999999999999998776543311110                 1       111111111111        


Q ss_pred             --CCeEEEEEEEeCCCcccccccccccccC--ccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           57 --GGKKMKLAIWDTAGQERFRTLTSSYYRG--AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        57 --~~~~~~~~i~D~~g~~~~~~~~~~~~~~--~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                        ....-.+.++|..|+..|.......+..  .|..+++.++...-.... ++ .+-.+..    -++|+.++.+|.|+.
T Consensus       243 i~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rE-HLgl~~A----L~iPfFvlvtK~Dl~  316 (591)
T KOG1143|consen  243 IVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-RE-HLGLIAA----LNIPFFVLVTKMDLV  316 (591)
T ss_pred             HHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HH-HHHHHHH----hCCCeEEEEEeeccc
Confidence              1122348899999999988776665553  588888888876544322 22 2223333    388999999999998


Q ss_pred             Cch
Q 031704          133 CPW  135 (154)
Q Consensus       133 ~~~  135 (154)
                      ++.
T Consensus       317 ~~~  319 (591)
T KOG1143|consen  317 DRQ  319 (591)
T ss_pred             cch
Confidence            774

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.09  E-value=4.4e-06  Score=56.19  Aligned_cols=52  Identities=29%  Similarity=0.471  Sum_probs=32.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDT   68 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~   68 (154)
                      ||++.|++|+||||++++++..--....+..|  +.+....-++..+-+.+.|.
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~G--f~t~evr~~g~r~GF~iv~l   52 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGG--FYTEEVRENGRRIGFDIVDL   52 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEE--EEEEEEETTSSEEEEEEEET
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhccCCccce--EEeecccCCCceEEEEEEEC
Confidence            68999999999999999987543111122222  44444445555666666666

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=98.08  E-value=1.3e-05  Score=61.70  Aligned_cols=127  Identities=20%  Similarity=0.280  Sum_probs=81.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCC------------C---CCCCCcceeeeEEEEEEE----------------CCeE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDT------------F---EELSPTIGVDFKIKHVAL----------------GGKK   60 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~------------~---~~~~~~~~~~~~~~~~~~----------------~~~~   60 (154)
                      ...++.++....-|||||...|..+.            |   ....+..+++..+..+.+                ++..
T Consensus        18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~   97 (842)
T KOG0469|consen   18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG   97 (842)
T ss_pred             ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence            45678899999999999999986432            1   111223344444443332                3456


Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC-Cchhhhh
Q 031704           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV-CPWRLFL  139 (154)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~-~~~~~~~  139 (154)
                      +.++++|.||+.+|++.....+|-.|+.++|.|.-+.--.+.-.. +.+.+.+     .+..++++||.|.. -+-++..
T Consensus        98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETV-LrQA~~E-----RIkPvlv~NK~DRAlLELq~~~  171 (842)
T KOG0469|consen   98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETV-LRQAIAE-----RIKPVLVMNKMDRALLELQLSQ  171 (842)
T ss_pred             eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHH-HHHHHHh-----hccceEEeehhhHHHHhhcCCH
Confidence            789999999999999999999999999999999765322211111 2223322     23337899999962 2334555


Q ss_pred             hhhhh
Q 031704          140 SGFWH  144 (154)
Q Consensus       140 ~~~~~  144 (154)
                      +++|.
T Consensus       172 EeLyq  176 (842)
T KOG0469|consen  172 EELYQ  176 (842)
T ss_pred             HHHHH
Confidence            55554

>PRK12289 GTPase RsgA; Reviewed

Probab=98.07  E-value=1.2e-05  Score=60.07  Aligned_cols=55  Identities=20%  Similarity=0.235  Sum_probs=38.6

Q ss_pred             cccccccCccEEEEEEECCCcchHH-HHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           77 LTSSYYRGAQGIIMVYDVTRRDTFT-NLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        77 ~~~~~~~~~~~~v~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      +....+.++|.+++|+|+.++.... .+.. |+....    ..++|+++|+||+||.++.+
T Consensus        82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR-~L~~a~----~~~ip~ILVlNK~DLv~~~~  137 (352)
T PRK12289         82 LDRPPVANADQILLVFALAEPPLDPWQLSR-FLVKAE----STGLEIVLCLNKADLVSPTE  137 (352)
T ss_pred             eechhhhcCCEEEEEEECCCCCCCHHHHHH-HHHHHH----HCCCCEEEEEEchhcCChHH
Confidence            3444578899999999998766322 3333 544432    34789999999999986544

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.05  E-value=7.8e-06  Score=62.03  Aligned_cols=74  Identities=16%  Similarity=0.150  Sum_probs=55.8

Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEECCCc----------chHHHHHHHHHHHHhhhcCCCCCcEEEEEeC
Q 031704           59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLADIWAKEIDLYSTNQDCIKLLVGNK  128 (154)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK  128 (154)
                      ....+.++|++|+...+..|..++...+++++|.++++.          ..+.+... +++.+.......+.|++|++||
T Consensus       234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~-lF~~i~~~~~~~~~~iil~lnK  312 (389)
T PF00503_consen  234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLN-LFESICNNPWFKNTPIILFLNK  312 (389)
T ss_dssp             TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHH-HHHHHHTSGGGTTSEEEEEEE-
T ss_pred             cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHH-HHHHHHhCcccccCceEEeeec
Confidence            345788899999999999999999999999999998742          23555556 3344443335568899999999


Q ss_pred             CCCCC
Q 031704          129 VDKVC  133 (154)
Q Consensus       129 ~Dl~~  133 (154)
                      .|+..
T Consensus       313 ~D~f~  317 (389)
T PF00503_consen  313 IDLFE  317 (389)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99853

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>cd01859 MJ1464 MJ1464

Probab=98.02  E-value=4.2e-06  Score=55.37  Aligned_cols=54  Identities=17%  Similarity=0.143  Sum_probs=36.2

Q ss_pred             cccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        75 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +++....++++|++++|+|+.++...... . +...+    ...+.|+++|+||+|+.++
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~-l~~~~----~~~~~p~iiv~NK~Dl~~~   56 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRSR-K-LERYV----LELGKKLLIVLNKADLVPK   56 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCCH-H-HHHHH----HhCCCcEEEEEEhHHhCCH
Confidence            44566677789999999999875433221 1 22222    2236799999999999654

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.02  E-value=1.6e-05  Score=58.23  Aligned_cols=49  Identities=18%  Similarity=0.212  Sum_probs=37.7

Q ss_pred             ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      ..++|.+++|+|+.++.........|...+..    .++|+++|+||+||.+.
T Consensus        78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~  126 (298)
T PRK00098         78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDD  126 (298)
T ss_pred             eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCC
Confidence            47899999999998887766654446655543    47899999999999643

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.01  E-value=4.1e-05  Score=59.93  Aligned_cols=110  Identities=15%  Similarity=0.137  Sum_probs=68.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCC-CCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      ..+=++|+||+|+|||||+.++...-. ... ..+..+|      -+.+++..++++.+|  .+..++. ...+=+|.++
T Consensus        68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiT------vvsgK~RRiTflEcp--~Dl~~mi-DvaKIaDLVl  138 (1077)
T COG5192          68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPIT------VVSGKTRRITFLECP--SDLHQMI-DVAKIADLVL  138 (1077)
T ss_pred             CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceE------EeecceeEEEEEeCh--HHHHHHH-hHHHhhheeE
Confidence            446778999999999999999875432 111 1111111      134677789999999  3333332 2345589999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      +++|.+-.-..+.. + +++.+..+   .-..++-|+|..||....
T Consensus       139 LlIdgnfGfEMETm-E-FLnil~~H---GmPrvlgV~ThlDlfk~~  179 (1077)
T COG5192         139 LLIDGNFGFEMETM-E-FLNILISH---GMPRVLGVVTHLDLFKNP  179 (1077)
T ss_pred             EEeccccCceehHH-H-HHHHHhhc---CCCceEEEEeecccccCh
Confidence            99998764333322 2 44455444   223467789999997554

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.01  E-value=1.7e-05  Score=57.79  Aligned_cols=50  Identities=10%  Similarity=0.024  Sum_probs=39.5

Q ss_pred             cccCccEEEEEEECCCcc-hHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           81 YYRGAQGIIMVYDVTRRD-TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        81 ~~~~~~~~v~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      .+.++|.+++|+|+.++. ++..+.. |+..+..    .++|+++|+||+||.++.
T Consensus        75 i~anvD~vllV~d~~~p~~s~~~ldr-~L~~~~~----~~ip~iIVlNK~DL~~~~  125 (287)
T cd01854          75 IAANVDQLVIVVSLNEPFFNPRLLDR-YLVAAEA----AGIEPVIVLTKADLLDDE  125 (287)
T ss_pred             EEEeCCEEEEEEEcCCCCCCHHHHHH-HHHHHHH----cCCCEEEEEEHHHCCChH
Confidence            477899999999999887 7676666 6665543    368899999999997653

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.99  E-value=6.2e-06  Score=61.49  Aligned_cols=57  Identities=25%  Similarity=0.373  Sum_probs=49.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCC
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG   70 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   70 (154)
                      ..-+++.|+|-|++||||+||+|...+.....+..|.|.....+.++.   .+.+.|.||
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk---~i~llDsPg  306 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDK---KIRLLDSPG  306 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccC---CceeccCCc
Confidence            456899999999999999999999999988888888887777777664   567889999

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=97.98  E-value=8.1e-06  Score=53.21  Aligned_cols=55  Identities=13%  Similarity=0.073  Sum_probs=36.7

Q ss_pred             cccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        79 ~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      ...+.++|++++|+|+.++.+.... . +.+.+...  ..+.|+++|+||+|+..+...
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~-~-l~~~l~~~--~~~k~~iivlNK~DL~~~~~~   60 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPP-D-LERYVKEV--DPRKKNILLLNKADLLTEEQR   60 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCH-H-HHHHHHhc--cCCCcEEEEEechhcCCHHHH
Confidence            3457889999999999887654321 1 22233322  146799999999999765543

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.94  E-value=1.4e-05  Score=57.89  Aligned_cols=59  Identities=19%  Similarity=0.400  Sum_probs=42.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC-----CCCCCCCcceeeeEEEE-EEECCeEEEEEEEeCCC
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSD-----TFEELSPTIGVDFKIKH-VALGGKKMKLAIWDTAG   70 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~g   70 (154)
                      +..+++.|+|-||+|||||+|.+-..     +........|+|..... +.+.++. .+.+.||||
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPG  205 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPG  205 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCC
Confidence            46799999999999999999987532     22445555666665555 4444433 478899999

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.94  E-value=2.3e-05  Score=66.15  Aligned_cols=111  Identities=24%  Similarity=0.173  Sum_probs=61.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC-CC-----CCCcceeeeEEEEEEECCeEEEEEEEeCCCccc--------cccccccc
Q 031704           16 LLLIGDSGVGKSTLLLSFTSDTF-EE-----LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER--------FRTLTSSY   81 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~   81 (154)
                      .+|||++|+||||++..--.+-. ..     .....+ |.++. +.+.+   +-.++||.|...        -...|..+
T Consensus       128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~~cd-wwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~f  202 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TRNCD-WWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGF  202 (1188)
T ss_pred             eEEecCCCCCcchHHhcccccCcchhhhccccccCCC-CcccC-ccccc---ceEEEcCCcceecccCcchhhHHHHHHH
Confidence            57889999999998875322111 10     011111 22222 33444   346779999321        12223322


Q ss_pred             ---------ccCccEEEEEEECCCcchH---------HHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           82 ---------YRGAQGIIMVYDVTRRDTF---------TNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        82 ---------~~~~~~~v~v~d~~~~~s~---------~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                               .+-.|++|+.+|+.+..+-         ..++. -+++++.. -....|++|++||.|+..
T Consensus       203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~-RL~El~~t-L~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRA-RLQELRET-LHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHH-HHHHHHHh-hccCCceEEEEecccccc
Confidence                     2346999999998752221         11222 12333333 345779999999999964

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.91  E-value=9.3e-06  Score=58.93  Aligned_cols=77  Identities=14%  Similarity=0.119  Sum_probs=48.0

Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCC----cchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      .++.|.|+||++-.-..+....--.|++++++..+.    +++-+.+...   .+..     -..++++-||+||..+.+
T Consensus       125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav---eiM~-----LkhiiilQNKiDli~e~~  196 (466)
T KOG0466|consen  125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV---EIMK-----LKHIIILQNKIDLIKESQ  196 (466)
T ss_pred             EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH---HHhh-----hceEEEEechhhhhhHHH
Confidence            368889999998765554443344588888877653    4455555441   2211     134799999999987765


Q ss_pred             hh--hhhhhhh
Q 031704          137 LF--LSGFWHF  145 (154)
Q Consensus       137 ~~--~~~~~~~  145 (154)
                      ..  -+.+.+|
T Consensus       197 A~eq~e~I~kF  207 (466)
T KOG0466|consen  197 ALEQHEQIQKF  207 (466)
T ss_pred             HHHHHHHHHHH
Confidence            42  2444444

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.88  E-value=4.1e-05  Score=51.54  Aligned_cols=67  Identities=18%  Similarity=0.159  Sum_probs=37.4

Q ss_pred             EEEEEEeCCCcccccccc----ccc--ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           61 MKLAIWDTAGQERFRTLT----SSY--YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~----~~~--~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +.+.++|++|........    ..+  ....+.+++|+|.......  . + +...+....   + ...+|.||.|....
T Consensus        83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~--~-~-~~~~~~~~~---~-~~~viltk~D~~~~  154 (173)
T cd03115          83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA--V-N-QAKAFNEAL---G-ITGVILTKLDGDAR  154 (173)
T ss_pred             CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH--H-H-HHHHHHhhC---C-CCEEEEECCcCCCC
Confidence            457889999964322111    111  1248999999998654322  2 2 222332221   2 25677899998654


Q ss_pred             h
Q 031704          135 W  135 (154)
Q Consensus       135 ~  135 (154)
                      .
T Consensus       155 ~  155 (173)
T cd03115         155 G  155 (173)
T ss_pred             c
Confidence            3

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.85  E-value=4.7e-05  Score=55.11  Aligned_cols=68  Identities=18%  Similarity=0.214  Sum_probs=38.5

Q ss_pred             EEEEEEEeCCCccccccccc-------ccc-----cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEe
Q 031704           60 KMKLAIWDTAGQERFRTLTS-------SYY-----RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN  127 (154)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~-------~~~-----~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~n  127 (154)
                      .+.+.++||||.........       ...     ..+|..++|+|++...  +.+..  ...+...   - .+--+|.|
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~--~~~f~~~---~-~~~g~IlT  225 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQ--AKVFNEA---V-GLTGIILT  225 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHH--HHHHHhh---C-CCCEEEEE
Confidence            36789999999654322211       111     2378999999997532  22222  1222211   1 13478899


Q ss_pred             CCCCCCch
Q 031704          128 KVDKVCPW  135 (154)
Q Consensus       128 K~Dl~~~~  135 (154)
                      |.|....-
T Consensus       226 KlDe~~~~  233 (272)
T TIGR00064       226 KLDGTAKG  233 (272)
T ss_pred             ccCCCCCc
Confidence            99985443

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd01855 YqeH YqeH

Probab=97.84  E-value=1.9e-05  Score=53.96  Aligned_cols=54  Identities=22%  Similarity=0.150  Sum_probs=38.6

Q ss_pred             cccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        73 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      .+..++..+++++|++++|+|+++....      |...+..  ...+.|+++|+||+|+..+
T Consensus        23 ~~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~--~~~~~~~ilV~NK~Dl~~~   76 (190)
T cd01855          23 FILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRL--FGGNNPVILVGNKIDLLPK   76 (190)
T ss_pred             HHHHHHHhcccCCcEEEEEEECccCCCc------cchhHHH--hcCCCcEEEEEEchhcCCC
Confidence            3577788889999999999999875421      2222222  1246799999999999754

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.84  E-value=2.1e-05  Score=54.63  Aligned_cols=25  Identities=28%  Similarity=0.465  Sum_probs=21.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ...-|+++|++|||||||++.|...
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhc
Confidence            4466888999999999999999754

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.84  E-value=0.00011  Score=54.28  Aligned_cols=23  Identities=35%  Similarity=0.592  Sum_probs=19.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHh
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~   34 (154)
                      ...-++++|++|+||||++..+.
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA  135 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLA  135 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHH
Confidence            34678899999999999998875

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=97.83  E-value=3.8e-05  Score=50.83  Aligned_cols=64  Identities=19%  Similarity=-0.019  Sum_probs=37.7

Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh--hhhhhhhhccccccC
Q 031704           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL--SGFWHFLLSKFYCSS  154 (154)
Q Consensus        86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~S  154 (154)
                      |++++|+|+.++.+....   +...  ......+.|+++|+||+|+..+..+..  ..+.......++++|
T Consensus         1 Dvvl~VvD~~~p~~~~~~---~i~~--~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vS   66 (155)
T cd01849           1 DVILEVLDARDPLGTRSP---DIER--VLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKIS   66 (155)
T ss_pred             CEEEEEEeccCCccccCH---HHHH--HHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEe
Confidence            689999999887654432   2221  111334689999999999976543321  123223334456655

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK13695 putative NTPase; Provisional

Probab=97.82  E-value=0.00025  Score=47.80  Aligned_cols=22  Identities=41%  Similarity=0.715  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      +||++.|++|+|||||+..+.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998653

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.79  E-value=9.1e-05  Score=53.90  Aligned_cols=106  Identities=11%  Similarity=0.196  Sum_probs=65.2

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc----------------
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE----------------   72 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------------   72 (154)
                      ...+-.+++++|++|-|||+++++|.....+...+ ..            ..+.|..+..|...                
T Consensus        57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~-~~------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP  123 (302)
T PF05621_consen   57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDE-DA------------ERIPVVYVQMPPEPDERRFYSAILEALGAP  123 (302)
T ss_pred             cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCC-CC------------ccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence            33455789999999999999999999765422111 11            12234444554411                


Q ss_pred             --------cccccccccccCccEEEEEEECCC---cchHHHHHHHHHHHHhhhcCCCCCcEEEEEeC
Q 031704           73 --------RFRTLTSSYYRGAQGIIMVYDVTR---RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK  128 (154)
Q Consensus        73 --------~~~~~~~~~~~~~~~~v~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK  128 (154)
                              .........++...+=++++|--.   ..+....+. ..+.++..+..-.+|+|.||++
T Consensus       124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~-~Ln~LK~L~NeL~ipiV~vGt~  189 (302)
T PF05621_consen  124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQRE-FLNALKFLGNELQIPIVGVGTR  189 (302)
T ss_pred             cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHH-HHHHHHHHhhccCCCeEEeccH
Confidence                    112223455677888888988432   223334444 5666776666678999999975

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.75  E-value=6.2e-05  Score=56.67  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      -.++++|++|+||||++..|..
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~  159 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAA  159 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999998864

>PRK14974 cell division protein FtsY; Provisional

Probab=97.75  E-value=0.0003  Score=52.40  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=19.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHh
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~   34 (154)
                      +..-|+++|++|+||||.+..+.
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA  161 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLA  161 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHH
Confidence            35789999999999999766654

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=97.74  E-value=0.00025  Score=53.22  Aligned_cols=123  Identities=17%  Similarity=0.131  Sum_probs=75.3

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-------------cce--eeeEEEEEEECCe--------------
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-------------TIG--VDFKIKHVALGGK--------------   59 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~-------------~~~--~~~~~~~~~~~~~--------------   59 (154)
                      +....+.+.+.|....|||||+-.|..++..+...             ..|  .+.....+-+++.              
T Consensus       113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~  192 (527)
T COG5258         113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK  192 (527)
T ss_pred             CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence            34456889999999999999999988765421110             001  1122222222221              


Q ss_pred             -------EEEEEEEeCCCcccccccc-cccc-cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCC
Q 031704           60 -------KMKLAIWDTAGQERFRTLT-SSYY-RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD  130 (154)
Q Consensus        60 -------~~~~~i~D~~g~~~~~~~~-~~~~-~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D  130 (154)
                             .--+.+.||.|++.+-... ...+ ++.|-.+++..+++.-+--.-..  +-..    ..-..|++++.||+|
T Consensus       193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEH--Lgi~----~a~~lPviVvvTK~D  266 (527)
T COG5258         193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEH--LGIA----LAMELPVIVVVTKID  266 (527)
T ss_pred             hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHh--hhhh----hhhcCCEEEEEEecc
Confidence                   1237888999998764433 3333 46798899988887544222111  1111    234789999999999


Q ss_pred             CCCchhh
Q 031704          131 KVCPWRL  137 (154)
Q Consensus       131 l~~~~~~  137 (154)
                      +.+++..
T Consensus       267 ~~~ddr~  273 (527)
T COG5258         267 MVPDDRF  273 (527)
T ss_pred             cCcHHHH
Confidence            9877654

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=97.73  E-value=0.00025  Score=50.57  Aligned_cols=90  Identities=20%  Similarity=0.156  Sum_probs=58.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc-------cccccccccCc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF-------RTLTSSYYRGA   85 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~   85 (154)
                      -++-++|-|++||||++..+.+... ...+..++.+.......+  +.-++.+.|.||.-+-       ........|.|
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y--~gaKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRY--KGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEec--cccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            3788999999999999999988765 222233222222222222  3346788899993221       12234456889


Q ss_pred             cEEEEEEECCCcchHHHHHH
Q 031704           86 QGIIMVYDVTRRDTFTNLAD  105 (154)
Q Consensus        86 ~~~v~v~d~~~~~s~~~~~~  105 (154)
                      +.+++|+|+..+-+-..+.+
T Consensus       138 nli~~vld~~kp~~hk~~ie  157 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSHKKIIE  157 (358)
T ss_pred             cEEEEEeeccCcccHHHHHH
Confidence            99999999998876655544

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.69  E-value=0.00028  Score=38.45  Aligned_cols=43  Identities=23%  Similarity=0.256  Sum_probs=26.6

Q ss_pred             ccEEEEEEECCC--cchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCC
Q 031704           85 AQGIIMVYDVTR--RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD  130 (154)
Q Consensus        85 ~~~~v~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D  130 (154)
                      .+++++++|++.  .-+.+.... +++.++..  -.+.|+++|.||+|
T Consensus        14 ~~~ilfi~D~Se~CGysie~Q~~-L~~~ik~~--F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSEQCGYSIEEQLS-LFKEIKPL--FPNKPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT-TTSS-HHHHHH-HHHHHHHH--TTTS-EEEEE--TT
T ss_pred             cceEEEEEcCCCCCCCCHHHHHH-HHHHHHHH--cCCCCEEEEEeccC
Confidence            589999999975  456666666 55555543  34889999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.68  E-value=4.1e-05  Score=48.30  Aligned_cols=22  Identities=32%  Similarity=0.527  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999999764

...

>PRK08118 topology modulation protein; Reviewed

Probab=97.66  E-value=4.1e-05  Score=51.41  Aligned_cols=22  Identities=45%  Similarity=0.709  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ||+|+|++|||||||...+...
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            8999999999999999988754

>cd01858 NGP_1 NGP-1

Probab=97.66  E-value=0.00011  Score=48.66  Aligned_cols=53  Identities=17%  Similarity=0.119  Sum_probs=35.0

Q ss_pred             ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        80 ~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      ..+..+|++++|.|+.++..-.. .. +.+.+..  ...+.|+++|+||+|+.++..
T Consensus         4 ~~l~~aD~il~VvD~~~p~~~~~-~~-i~~~l~~--~~~~~p~ilVlNKiDl~~~~~   56 (157)
T cd01858           4 KVIDSSDVVIQVLDARDPMGTRC-KH-VEEYLKK--EKPHKHLIFVLNKCDLVPTWV   56 (157)
T ss_pred             HhhhhCCEEEEEEECCCCccccC-HH-HHHHHHh--ccCCCCEEEEEEchhcCCHHH
Confidence            34778999999999988632211 11 2233332  234579999999999976543

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK12288 GTPase RsgA; Reviewed

Probab=97.66  E-value=0.0002  Score=53.56  Aligned_cols=48  Identities=17%  Similarity=0.142  Sum_probs=37.3

Q ss_pred             cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        83 ~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      -++|.+++|+++....++..+.. |+....    ..++|+++|+||+||.++.
T Consensus       119 ANvD~vlIV~s~~p~~s~~~Ldr-~L~~a~----~~~i~~VIVlNK~DL~~~~  166 (347)
T PRK12288        119 ANIDQIVIVSAVLPELSLNIIDR-YLVACE----TLGIEPLIVLNKIDLLDDE  166 (347)
T ss_pred             EEccEEEEEEeCCCCCCHHHHHH-HHHHHH----hcCCCEEEEEECccCCCcH
Confidence            34899999999988888877777 655443    3468899999999997654

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.66  E-value=0.00076  Score=49.99  Aligned_cols=46  Identities=22%  Similarity=0.252  Sum_probs=30.1

Q ss_pred             ccEEEEEEECCCcchHHH-HHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           85 AQGIIMVYDVTRRDTFTN-LADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        85 ~~~~v~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      -|+++-|+|+.+...-.. ..+....++...       =+||+||.|+.++..+
T Consensus       117 ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A-------D~ivlNK~Dlv~~~~l  163 (323)
T COG0523         117 LDGVVTVVDAAHFLEGLDAIAELAEDQLAFA-------DVIVLNKTDLVDAEEL  163 (323)
T ss_pred             eceEEEEEeHHHhhhhHHHHHHHHHHHHHhC-------cEEEEecccCCCHHHH
Confidence            589999999887544322 334233343322       2799999999987754

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=0.00032  Score=49.83  Aligned_cols=117  Identities=25%  Similarity=0.322  Sum_probs=66.6

Q ss_pred             eEEEEEEcCCCC--CHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEE--EEEEeCCCcccccccccccccCccEE
Q 031704           13 LFKLLLIGDSGV--GKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMK--LAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus        13 ~~ki~v~G~~~~--GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      ++-.+|+|.+|+  ||-+++.+|....+........ ......++++++.|.  +.++=.+-.+++.--......-..++
T Consensus         4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~-~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~   82 (418)
T KOG4273|consen    4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESND-ATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAF   82 (418)
T ss_pred             CceEEEecccccccchHHHHHHhcchhheeeccccC-ceeeeceEecceeeecceeEEeecccchhccCCcccccceeeE
Confidence            357889999998  9999999999888732221111 111223334443332  22222221111110011111234789


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +++||.+....++.+.. |.......  .-++ ++.+|||.|....
T Consensus        83 vmvfdlse~s~l~alqd-wl~htdin--sfdi-llcignkvdrvph  124 (418)
T KOG4273|consen   83 VMVFDLSEKSGLDALQD-WLPHTDIN--SFDI-LLCIGNKVDRVPH  124 (418)
T ss_pred             EEEEeccchhhhHHHHh-hccccccc--cchh-heecccccccccc
Confidence            99999999988888888 87643322  1122 5678999998543

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.63  E-value=4.7e-05  Score=51.65  Aligned_cols=23  Identities=35%  Similarity=0.699  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .||+++|+|||||||+...+...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999876

>PRK07261 topology modulation protein; Provisional

Probab=97.60  E-value=5.7e-05  Score=50.93  Aligned_cols=22  Identities=45%  Similarity=0.644  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ||+|+|++|+|||||...+...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999998643

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.60  E-value=0.00034  Score=50.81  Aligned_cols=24  Identities=29%  Similarity=0.380  Sum_probs=20.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      +...|-+.|.||+|||||+..|..
T Consensus        50 ~a~viGITG~PGaGKSTli~~L~~   73 (323)
T COG1703          50 NAHVIGITGVPGAGKSTLIEALGR   73 (323)
T ss_pred             CCcEEEecCCCCCchHHHHHHHHH
Confidence            446899999999999999998853

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.59  E-value=0.00049  Score=44.08  Aligned_cols=24  Identities=38%  Similarity=0.571  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      ..+++.|++|+|||++++.+...-
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999998754

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.59  E-value=0.00033  Score=51.83  Aligned_cols=22  Identities=41%  Similarity=0.513  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      =.++.|--|||||||+|+++..
T Consensus         6 v~iltGFLGaGKTTll~~ll~~   27 (318)
T PRK11537          6 VTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc
Confidence            4567899999999999999864

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.58  E-value=0.00078  Score=40.21  Aligned_cols=97  Identities=15%  Similarity=0.094  Sum_probs=54.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc-ccccccCccEEEEEEEC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL-TSSYYRGAQGIIMVYDV   94 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~~~~v~v~d~   94 (154)
                      +++.|..|+||||+...+...-.....         +...++    .+.++|+++....... .......+|.++++.+.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~---------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~   68 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGK---------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP   68 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCC---------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence            578899999999999887643221111         111222    5778899986543321 13446678999998886


Q ss_pred             CCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEe
Q 031704           95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN  127 (154)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~n  127 (154)
                      ... +......... ...........+..++.|
T Consensus        69 ~~~-~~~~~~~~~~-~~~~~~~~~~~~~~vv~N   99 (99)
T cd01983          69 EAL-AVLGARRLTE-VVLELAIEGLRPVGVVVN   99 (99)
T ss_pred             chh-hHHHHHHHHH-HHHHhhccCCceEEEEeC
Confidence            643 3344333122 222222334445555544

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.57  E-value=0.00032  Score=45.58  Aligned_cols=107  Identities=16%  Similarity=0.138  Sum_probs=58.8

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCc
Q 031704           18 LIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR   97 (154)
Q Consensus        18 v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~   97 (154)
                      .-|..|+|||++.-.+...-........-.+...   ....-.+.+.++|+|+..  .......+..+|.++++.+.+. 
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~-   78 (139)
T cd02038           5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP-   78 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh-
Confidence            4467899999987765422110000000000000   000111678999999753  3333456888999999998763 


Q ss_pred             chHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           98 DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        98 ~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      .++..... ..+.+...  ....++.+|.|+++...
T Consensus        79 ~s~~~~~~-~l~~l~~~--~~~~~~~lVvN~~~~~~  111 (139)
T cd02038          79 TSITDAYA-LIKKLAKQ--LRVLNFRVVVNRAESPK  111 (139)
T ss_pred             hHHHHHHH-HHHHHHHh--cCCCCEEEEEeCCCCHH
Confidence            44444444 23344332  13456789999998543

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.56  E-value=7.1e-05  Score=48.55  Aligned_cols=21  Identities=38%  Similarity=0.601  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (154)
                      |+++|++||||||++..+...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999998743

...

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.54  E-value=0.00027  Score=55.43  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=19.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      .-.|+++|+.|+||||++..|..
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa  372 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999988754

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.53  E-value=7.1e-05  Score=51.17  Aligned_cols=24  Identities=21%  Similarity=0.351  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .=|+++|++|+|||||+++|+...
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            348899999999999999998754

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.52  E-value=5.8e-05  Score=50.33  Aligned_cols=22  Identities=23%  Similarity=0.596  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ||++.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999765

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.51  E-value=8.3e-05  Score=52.53  Aligned_cols=24  Identities=38%  Similarity=0.423  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF   38 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~   38 (154)
                      =++++|++|||||||++-+.+-..
T Consensus        31 fvsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            378999999999999999876543

>cd01856 YlqF YlqF

Probab=97.48  E-value=6.7e-05  Score=50.48  Aligned_cols=53  Identities=19%  Similarity=0.064  Sum_probs=34.8

Q ss_pred             ccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           76 TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        76 ~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      ......+.++|.+++|+|+.++...... . +...+      .+.|+++|+||+|+.++..
T Consensus        11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~-~-i~~~~------~~k~~ilVlNK~Dl~~~~~   63 (171)
T cd01856          11 RQIKEKLKLVDLVIEVRDARIPLSSRNP-L-LEKIL------GNKPRIIVLNKADLADPKK   63 (171)
T ss_pred             HHHHHHHhhCCEEEEEeeccCccCcCCh-h-hHhHh------cCCCEEEEEehhhcCChHH
Confidence            3345567889999999999875442211 1 11111      2468999999999975543

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.44  E-value=7.6e-05  Score=50.51  Aligned_cols=24  Identities=46%  Similarity=0.690  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .=+++.||+|+||||+++.|+...
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            457889999999999999999765

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.44  E-value=0.00078  Score=41.31  Aligned_cols=79  Identities=15%  Similarity=0.175  Sum_probs=46.7

Q ss_pred             EEEEc-CCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 031704           16 LLLIG-DSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   94 (154)
Q Consensus        16 i~v~G-~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~   94 (154)
                      |++.| ..|+||||+...+...-.....+       ...+..+. .+.+.++|+|+.....  ....+..+|.++++.+.
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~-------vl~~d~d~-~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~   71 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARRGKR-------VLLIDLDP-QYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQP   71 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhCCCc-------EEEEeCCC-CCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccC
Confidence            56666 45899999877654321111111       11122221 1678899999864322  33667789999999986


Q ss_pred             CCcchHHHHHH
Q 031704           95 TRRDTFTNLAD  105 (154)
Q Consensus        95 ~~~~s~~~~~~  105 (154)
                      + ..++.....
T Consensus        72 ~-~~s~~~~~~   81 (104)
T cd02042          72 S-PLDLDGLEK   81 (104)
T ss_pred             C-HHHHHHHHH
Confidence            5 455555555

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.43  E-value=0.00012  Score=51.38  Aligned_cols=23  Identities=39%  Similarity=0.459  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      -++++|++|||||||+|-+-+-.
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            47899999999999999887544

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.41  E-value=0.00016  Score=46.61  Aligned_cols=23  Identities=35%  Similarity=0.522  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            68999999999999999888754

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.39  E-value=0.0009  Score=41.45  Aligned_cols=98  Identities=16%  Similarity=0.180  Sum_probs=54.2

Q ss_pred             cCCCCCHHHHHHHHhcCCCCC-CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcc
Q 031704           20 GDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD   98 (154)
Q Consensus        20 G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~   98 (154)
                      +..|+||||+...+-..-... .....-.+....   ...   .+.++|+|+....  .....+..+|.++++.+.+ ..
T Consensus         7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~---~~~---D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~~   77 (106)
T cd03111           7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ---FGD---DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-LP   77 (106)
T ss_pred             CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC---CCC---CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-hH
Confidence            446799999777664322111 111111000000   001   6788999986432  2344677899999998755 44


Q ss_pred             hHHHHHHHHHHHHhhhcCCC-CCcEEEEEeC
Q 031704           99 TFTNLADIWAKEIDLYSTNQ-DCIKLLVGNK  128 (154)
Q Consensus        99 s~~~~~~~~~~~~~~~~~~~-~~~~ivv~nK  128 (154)
                      +...+.. +.+.++.. ... ...+.+|+|+
T Consensus        78 s~~~~~~-~~~~l~~~-~~~~~~~~~lVvNr  106 (106)
T cd03111          78 SIRNAKR-LLELLRVL-DYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHH-HHHHHHHc-CCCCcCceEEEecC
Confidence            5566655 55555554 222 4467788875

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.38  E-value=0.00021  Score=39.78  Aligned_cols=21  Identities=43%  Similarity=0.599  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..++.|+.|+||||++..+..
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999988753

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.35  E-value=0.00064  Score=52.39  Aligned_cols=23  Identities=26%  Similarity=0.393  Sum_probs=19.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHh
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~   34 (154)
                      ....|+++|++|+||||.+..+.
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA  116 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLA  116 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHH
Confidence            45689999999999999988764

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.35  E-value=0.00022  Score=40.68  Aligned_cols=21  Identities=33%  Similarity=0.558  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (154)
                      |++.|++|+||||+.+.+...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999998764

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=97.35  E-value=0.00017  Score=54.28  Aligned_cols=56  Identities=25%  Similarity=0.265  Sum_probs=41.3

Q ss_pred             cccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      .+.+..+...+.+.++++++|+|+.+....      |.+.+....  .+.|+++|+||+|+..+
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s------~~~~l~~~~--~~~piilV~NK~DLl~k  105 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGS------LIPELKRFV--GGNPVLLVGNKIDLLPK  105 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCCC------ccHHHHHHh--CCCCEEEEEEchhhCCC
Confidence            456777788888899999999999765421      444554442  25789999999999753

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK06217 hypothetical protein; Validated

Probab=97.34  E-value=0.0002  Score=48.77  Aligned_cols=23  Identities=26%  Similarity=0.497  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .+|+|+|.+||||||+...|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999998754

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.32  E-value=0.0002  Score=49.71  Aligned_cols=24  Identities=42%  Similarity=0.524  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF   38 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~   38 (154)
                      .++++||+|||||||++.+.+-+.
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE~   53 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLEE   53 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCcC
Confidence            588999999999999999877554

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.32  E-value=0.00065  Score=51.37  Aligned_cols=22  Identities=36%  Similarity=0.563  Sum_probs=18.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHh
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~   34 (154)
                      .-.|+++||+|+||||-+-.|-
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLA  224 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLA  224 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHH
Confidence            3478999999999998777654

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=97.31  E-value=0.0012  Score=49.53  Aligned_cols=26  Identities=31%  Similarity=0.312  Sum_probs=21.6

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHh
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~   34 (154)
                      ..--..+++++|...+|||||+--|.
T Consensus       129 ~DF~E~RVAVVGNVDAGKSTLLGVLT  154 (641)
T KOG0463|consen  129 KDFIEARVAVVGNVDAGKSTLLGVLT  154 (641)
T ss_pred             ccceeEEEEEEecccCCcceeEeeee
Confidence            34467899999999999999987664

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.30  E-value=0.00026  Score=44.93  Aligned_cols=25  Identities=28%  Similarity=0.442  Sum_probs=21.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF   38 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~   38 (154)
                      -.++++|++|+|||+++..+...-.
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~   27 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELG   27 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccC
Confidence            3789999999999999999987655

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.29  E-value=0.0014  Score=49.10  Aligned_cols=21  Identities=29%  Similarity=0.488  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (154)
                      .++.|--|+|||||+++++..
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         7 TIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            567899999999999999864

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.28  E-value=0.00023  Score=48.13  Aligned_cols=22  Identities=36%  Similarity=0.510  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .++++|++||||||+++.+...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998654

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.28  E-value=0.00025  Score=48.12  Aligned_cols=25  Identities=36%  Similarity=0.369  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF   38 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~   38 (154)
                      =.++|+|++|+|||||+|-+.+-..
T Consensus        26 e~vAi~GpSGaGKSTLLnLIAGF~~   50 (231)
T COG3840          26 EIVAILGPSGAGKSTLLNLIAGFET   50 (231)
T ss_pred             cEEEEECCCCccHHHHHHHHHhccC
Confidence            3789999999999999998876443

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.28  E-value=0.00026  Score=48.25  Aligned_cols=22  Identities=36%  Similarity=0.631  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .++++|++|+||||+++.+.+.
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999654

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.28  E-value=0.00026  Score=46.01  Aligned_cols=21  Identities=52%  Similarity=0.773  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (154)
                      |+++|++|+||||+++.+...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            688999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK01889 GTPase RsgA; Reviewed

Probab=97.26  E-value=0.00029  Score=52.94  Aligned_cols=56  Identities=30%  Similarity=0.406  Sum_probs=0.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEE----EEeCCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLA----IWDTAG   70 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~D~~g   70 (154)
                      +++++|.+|+|||||+|.+.+............+...........-..+.    ++||||
T Consensus       197 ~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG  256 (356)
T PRK01889        197 TVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPG  256 (356)
T ss_pred             EEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCCCc

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.26  E-value=0.00027  Score=44.93  Aligned_cols=21  Identities=38%  Similarity=0.588  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (154)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999998864

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.26  E-value=0.0003  Score=45.86  Aligned_cols=22  Identities=23%  Similarity=0.490  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .|.|+|+.++|||||+..+++.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998764

>PRK14530 adenylate kinase; Provisional

Probab=97.25  E-value=0.00027  Score=49.35  Aligned_cols=22  Identities=32%  Similarity=0.554  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      .+|+++|++||||||+.+.|..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3899999999999999998853

>TIGR00101 ureG urease accessory protein UreG

Probab=97.25  E-value=0.0003  Score=48.63  Aligned_cols=23  Identities=30%  Similarity=0.524  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ++|.++|+.|+|||||++++++.
T Consensus         2 ~~i~i~G~~GsGKTTll~~l~~~   24 (199)
T TIGR00101         2 LKIGVAGPVGSGKTALIEALTRA   24 (199)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            68999999999999999988754

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK03839 putative kinase; Provisional

Probab=97.23  E-value=0.0003  Score=47.63  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      +|+++|.+|+||||+..++...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988653

>PRK10867 signal recognition particle protein; Provisional

Probab=97.23  E-value=0.0032  Score=48.56  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=17.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHH
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSF   33 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l   33 (154)
                      ...-|+++|++|+||||.+-.+
T Consensus        99 ~p~vI~~vG~~GsGKTTtaakL  120 (433)
T PRK10867         99 PPTVIMMVGLQGAGKTTTAGKL  120 (433)
T ss_pred             CCEEEEEECCCCCcHHHHHHHH
Confidence            3567899999999999965544

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.23  E-value=0.0003  Score=44.51  Aligned_cols=21  Identities=24%  Similarity=0.385  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (154)
                      |++.|.+|+||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999998754

...

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.22  E-value=0.00027  Score=52.43  Aligned_cols=22  Identities=45%  Similarity=0.635  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~   37 (154)
                      ++++||+||||||+++.+.+-.
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7889999999999999987644

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.22  E-value=0.00045  Score=47.91  Aligned_cols=24  Identities=25%  Similarity=0.314  Sum_probs=21.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      +...|++.|++|||||||.+.+..
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~   28 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYE   28 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999999865

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.22  E-value=0.00014  Score=54.70  Aligned_cols=83  Identities=17%  Similarity=0.173  Sum_probs=52.7

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc--ccccccccCccE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR--TLTSSYYRGAQG   87 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~~~~~~~~~~~   87 (154)
                      ....+-+.++|-|++||||+||.|-.++.....|-.|.|.   .+++---...+.++|+||...-.  ......+   -+
T Consensus       304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETK---VWQYItLmkrIfLIDcPGvVyps~dset~ivL---kG  377 (572)
T KOG2423|consen  304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETK---VWQYITLMKRIFLIDCPGVVYPSSDSETDIVL---KG  377 (572)
T ss_pred             CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcch---HHHHHHHHhceeEecCCCccCCCCCchHHHHh---hc
Confidence            4567889999999999999999999998876666666432   12111112356788999943322  1122222   34


Q ss_pred             EEEEEECCCcc
Q 031704           88 IIMVYDVTRRD   98 (154)
Q Consensus        88 ~v~v~d~~~~~   98 (154)
                      +|=|-.+.+++
T Consensus       378 vVRVenv~~pe  388 (572)
T KOG2423|consen  378 VVRVENVKNPE  388 (572)
T ss_pred             eeeeeecCCHH
Confidence            55566666654

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.21  E-value=0.00032  Score=47.42  Aligned_cols=23  Identities=39%  Similarity=0.645  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      -|+++|++|+||||+++.|....
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccC
Confidence            48899999999999999998753

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.19  E-value=0.00036  Score=49.49  Aligned_cols=27  Identities=37%  Similarity=0.578  Sum_probs=23.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCC
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      ...++++|+|++|||||+|+..++...
T Consensus        11 ~~~fr~viIG~sGSGKT~li~~lL~~~   37 (241)
T PF04665_consen   11 KDPFRMVIIGKSGSGKTTLIKSLLYYL   37 (241)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            455899999999999999999988643

This is thought to be an ATPase involved in viral DNA packaging [].

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.19  E-value=0.00038  Score=47.19  Aligned_cols=22  Identities=36%  Similarity=0.356  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      -.++++|+.|+|||||++.++.
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHhh
Confidence            3789999999999999998863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.19  E-value=0.00025  Score=46.42  Aligned_cols=25  Identities=32%  Similarity=0.408  Sum_probs=22.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ...++|+|.|.||+||||+..++..
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae   29 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAE   29 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHH
Confidence            5668999999999999999999864

>PLN02200 adenylate kinase family protein

Probab=97.18  E-value=0.00053  Score=48.58  Aligned_cols=25  Identities=24%  Similarity=0.365  Sum_probs=21.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ...+.|+++|+|||||||+..++..
T Consensus        41 ~~~~ii~I~G~PGSGKsT~a~~La~   65 (234)
T PLN02200         41 KTPFITFVLGGPGSGKGTQCEKIVE   65 (234)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998753

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.18  E-value=0.00037  Score=43.21  Aligned_cols=20  Identities=45%  Similarity=0.828  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 031704           15 KLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~   34 (154)
                      .++++|++|+|||||++.+.
T Consensus        17 ~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          17 GVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEcCCCCCHHHHHHHhh
Confidence            57999999999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.17  E-value=0.0003  Score=48.89  Aligned_cols=20  Identities=55%  Similarity=0.715  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 031704           16 LLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~   35 (154)
                      .+++||+|||||||+..+-.
T Consensus        36 TAlIGPSGcGKST~LR~lNR   55 (253)
T COG1117          36 TALIGPSGCGKSTLLRCLNR   55 (253)
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            57899999999999998754

>TIGR00235 udk uridine kinase

Probab=97.16  E-value=0.0005  Score=47.70  Aligned_cols=23  Identities=26%  Similarity=0.252  Sum_probs=20.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..-|+++|++|||||||++.+.+
T Consensus         6 g~vi~I~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235         6 GIIIGIGGGSGSGKTTVARKIYE   28 (207)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999999875

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.16  E-value=0.00041  Score=47.35  Aligned_cols=23  Identities=35%  Similarity=0.527  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -.++++|++|+||||+++.+++.
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            47899999999999999998864

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK13949 shikimate kinase; Provisional

Probab=97.16  E-value=0.0004  Score=46.73  Aligned_cols=21  Identities=33%  Similarity=0.612  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      +|+++|++|+||||+...+..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998764

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.16  E-value=0.00031  Score=52.69  Aligned_cols=53  Identities=19%  Similarity=0.270  Sum_probs=33.0

Q ss_pred             eEEEEEEEeCCCcccccc-ccccc-----ccCccEEEEEEECCCcchHHHHHHHHHHHH
Q 031704           59 KKMKLAIWDTAGQERFRT-LTSSY-----YRGAQGIIMVYDVTRRDTFTNLADIWAKEI  111 (154)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~-~~~~~-----~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~  111 (154)
                      +.+.+.|+||.|...... +....     .-+.|-+|+|.|++-.+.-+.....+.+.+
T Consensus       182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~v  240 (483)
T KOG0780|consen  182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETV  240 (483)
T ss_pred             cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhh
Confidence            456799999999543222 11111     224799999999987766655555355443

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.15  E-value=0.00046  Score=52.02  Aligned_cols=119  Identities=17%  Similarity=0.112  Sum_probs=70.4

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC--------------------CCCC----------CcceeeeEEEEEEECCe
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF--------------------EELS----------PTIGVDFKIKHVALGGK   59 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~--------------------~~~~----------~~~~~~~~~~~~~~~~~   59 (154)
                      ....++++++|..-+||||+-..++...-                    ..+.          ..-|-+.....-.+.-.
T Consensus        76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte  155 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE  155 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence            34568999999999999998887653210                    0000          00011111111122223


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEECCCcch---HH---HHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT---FT---NLADIWAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                      ..++.+.|.||+..|-..+..-..++|..++|+++...+.   |+   +.+. ...+..   ...-...|++.||.|-.
T Consensus       156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTRE-ha~Lak---t~gv~~lVv~vNKMddP  230 (501)
T KOG0459|consen  156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE-HAMLAK---TAGVKHLIVLINKMDDP  230 (501)
T ss_pred             ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhH-HHHHHH---hhccceEEEEEEeccCC
Confidence            3468899999999888777777888999999998743221   11   1111 111111   22344689999999964

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.14  E-value=0.00038  Score=47.88  Aligned_cols=21  Identities=29%  Similarity=0.449  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (154)
                      |.+.|++|||||||.+.+.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999998653

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR00959 ffh signal recognition particle protein

Probab=97.13  E-value=0.00075  Score=51.88  Aligned_cols=22  Identities=27%  Similarity=0.312  Sum_probs=17.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHH
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSF   33 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l   33 (154)
                      ...-++++|++|+||||.+-.+
T Consensus        98 ~p~vi~~vG~~GsGKTTtaakL  119 (428)
T TIGR00959        98 PPTVILMVGLQGSGKTTTCGKL  119 (428)
T ss_pred             CCEEEEEECCCCCcHHHHHHHH
Confidence            3567899999999999995544

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.13  E-value=0.0004  Score=47.13  Aligned_cols=21  Identities=24%  Similarity=0.412  Sum_probs=19.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHh
Q 031704           14 FKLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~   34 (154)
                      .-|+++|++||||||+++.+.
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIV   24 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            478999999999999999987

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK14532 adenylate kinase; Provisional

Probab=97.12  E-value=0.0004  Score=47.35  Aligned_cols=21  Identities=29%  Similarity=0.466  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      +|+++|+|||||||+..++..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999864

>PRK14531 adenylate kinase; Provisional

Probab=97.10  E-value=0.00048  Score=46.89  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      .+|+++|+|||||||+...+..
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~   24 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCA   24 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998854

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.10  E-value=0.00054  Score=47.55  Aligned_cols=27  Identities=26%  Similarity=0.370  Sum_probs=23.1

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcC
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ......|.++|..|+|||||+++++..
T Consensus        19 ~~~~~~i~~~G~~gsGKTTli~~l~~~   45 (207)
T TIGR00073        19 KHGLVVLNFMSSPGSGKTTLIEKLIDN   45 (207)
T ss_pred             hcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            345789999999999999999998753

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.10  E-value=0.00054  Score=44.28  Aligned_cols=21  Identities=38%  Similarity=0.691  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      .|+++|++|+|||++++.+..
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~   21 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAA   21 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999998764

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.09  E-value=0.00046  Score=47.61  Aligned_cols=22  Identities=36%  Similarity=0.534  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~   37 (154)
                      |++.|++|+||||+++.++..-
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999877543

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.09  E-value=0.00046  Score=49.38  Aligned_cols=21  Identities=38%  Similarity=0.536  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      =++++||.|||||||++.+.+
T Consensus        30 i~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          30 ITGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            367899999999999999876

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.09  E-value=0.00046  Score=47.43  Aligned_cols=22  Identities=36%  Similarity=0.531  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -++++|++|||||||+|-+.+-
T Consensus        33 ~vv~lGpSGcGKTTLLnl~AGf   54 (259)
T COG4525          33 LVVVLGPSGCGKTTLLNLIAGF   54 (259)
T ss_pred             EEEEEcCCCccHHHHHHHHhcC
Confidence            4788999999999999987653

>PRK02496 adk adenylate kinase; Provisional

Probab=97.09  E-value=0.00056  Score=46.47  Aligned_cols=22  Identities=27%  Similarity=0.585  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      .|++++|++|+||||+...+..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998864

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.09  E-value=0.00059  Score=46.04  Aligned_cols=24  Identities=33%  Similarity=0.378  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ..-+.++|++|+|||||++++...
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHH
Confidence            346899999999999999999864

>PRK08233 hypothetical protein; Provisional

Probab=97.07  E-value=0.00051  Score=46.36  Aligned_cols=23  Identities=30%  Similarity=0.284  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .-|++.|.+|+||||+.++|...
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            56788999999999999998753

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.07  E-value=0.00052  Score=46.56  Aligned_cols=23  Identities=22%  Similarity=0.423  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|+|||||++.+.+-.
T Consensus        27 ~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          27 VIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            68899999999999999988754

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.07  E-value=0.00055  Score=47.73  Aligned_cols=23  Identities=39%  Similarity=0.463  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|+|||||++.+.+-.
T Consensus        32 ~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCc
Confidence            67899999999999999998754

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.07  E-value=0.00052  Score=43.72  Aligned_cols=24  Identities=29%  Similarity=0.469  Sum_probs=18.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      --+++.|++|+|||++++++....
T Consensus         5 ~~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    5 RILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             --EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             cccEEEcCCCCCHHHHHHHHHHHh
Confidence            357899999999999999998754

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.06  E-value=0.00053  Score=48.42  Aligned_cols=22  Identities=36%  Similarity=0.667  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      +||+++|+|||||||+...+..
T Consensus         7 mrIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          7 LKIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998854

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.05  E-value=0.00052  Score=47.35  Aligned_cols=23  Identities=39%  Similarity=0.600  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      --|+++|++|+|||||++.+.+.
T Consensus         6 ~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          6 LLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            46899999999999999998765

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.05  E-value=0.00054  Score=48.21  Aligned_cols=21  Identities=52%  Similarity=0.733  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      -++++|++|+|||||++.+-+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            588999999999999999876

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.04  E-value=0.00061  Score=47.49  Aligned_cols=23  Identities=39%  Similarity=0.550  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|+|||||++.+.+-.
T Consensus        31 ~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        31 MVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            67899999999999999998754

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.04  E-value=0.00063  Score=47.20  Aligned_cols=23  Identities=39%  Similarity=0.531  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|+|||||++.+.+..
T Consensus        29 ~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          29 FVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.03  E-value=0.00062  Score=48.09  Aligned_cols=23  Identities=48%  Similarity=0.515  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|+|||||++.+.+-.
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          28 ILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998754

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.03  E-value=0.00057  Score=48.73  Aligned_cols=21  Identities=48%  Similarity=0.612  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      -++++||.|+|||||+..+++
T Consensus        32 ~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121          32 ITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478899999999999999998

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.03  E-value=0.00064  Score=46.99  Aligned_cols=23  Identities=30%  Similarity=0.417  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          28 IIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999998754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=97.02  E-value=0.00051  Score=46.87  Aligned_cols=22  Identities=32%  Similarity=0.581  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      +|+++|++|+||||+...|...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988653

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.01  E-value=0.00069  Score=46.81  Aligned_cols=23  Identities=43%  Similarity=0.475  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|+|||||++.+.+--
T Consensus        26 ~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        26 MYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999998753

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=97.01  E-value=0.00062  Score=50.91  Aligned_cols=25  Identities=32%  Similarity=0.478  Sum_probs=22.1

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ...+|+|.|++|+|||||++.++..
T Consensus       161 ~~~nilI~G~tGSGKTTll~aLl~~  185 (344)
T PRK13851        161 GRLTMLLCGPTGSGKTTMSKTLISA  185 (344)
T ss_pred             cCCeEEEECCCCccHHHHHHHHHcc
Confidence            3468999999999999999999864

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.01  E-value=0.00063  Score=46.47  Aligned_cols=23  Identities=48%  Similarity=0.663  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|+|||||++.+.+-.
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999988754

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.01  E-value=0.0006  Score=47.31  Aligned_cols=23  Identities=35%  Similarity=0.489  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|+|||||++.+.+-.
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCC
Confidence            78999999999999999998753

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.00  E-value=0.00057  Score=47.97  Aligned_cols=20  Identities=30%  Similarity=0.373  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 031704           16 LLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~   35 (154)
                      |.+.|++|||||||++.+.+
T Consensus         2 igI~G~sGSGKTTla~~L~~   21 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQA   21 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHH
Confidence            57899999999999998865

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>TIGR01351 adk adenylate kinases

Probab=97.00  E-value=0.00053  Score=47.69  Aligned_cols=21  Identities=33%  Similarity=0.582  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      ||+|+|+|||||||+..+|..
T Consensus         1 rI~i~G~pGsGKsT~a~~La~   21 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAE   21 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998854

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.00  E-value=0.0089  Score=42.19  Aligned_cols=49  Identities=18%  Similarity=0.124  Sum_probs=31.7

Q ss_pred             cccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        79 ~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                      +...+.+|.+++|.|.+. .++..... ..+..... .  -.++.+|+||.|..
T Consensus       150 Rg~~~~vD~vivVvDpS~-~sl~taer-i~~L~~el-g--~k~i~~V~NKv~e~  198 (255)
T COG3640         150 RGTIEGVDLVIVVVDPSY-KSLRTAER-IKELAEEL-G--IKRIFVVLNKVDEE  198 (255)
T ss_pred             cccccCCCEEEEEeCCcH-HHHHHHHH-HHHHHHHh-C--CceEEEEEeeccch
Confidence            334567899999999774 44444333 23333332 1  26899999999976

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.99  E-value=0.00073  Score=46.99  Aligned_cols=23  Identities=43%  Similarity=0.543  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|+|||||++.+.+-.
T Consensus        30 ~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        30 FLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999988753

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.99  E-value=0.00073  Score=46.95  Aligned_cols=23  Identities=43%  Similarity=0.616  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|+|||||++.+.+..
T Consensus        29 ~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          29 FVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998753

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=96.99  E-value=0.00052  Score=45.66  Aligned_cols=21  Identities=33%  Similarity=0.602  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (154)
                      |+++|++|+||||+.+.+...
T Consensus         1 i~l~G~~GsGKSTla~~l~~~   21 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHR   21 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHh
Confidence            578999999999999988754

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=96.99  E-value=0.00074  Score=47.21  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|+|||||++.+.+-.
T Consensus        28 ~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          28 IFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998753

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=96.98  E-value=0.00073  Score=47.91  Aligned_cols=23  Identities=43%  Similarity=0.531  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|+|||||++.+.+-.
T Consensus        30 ~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        30 FVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            68899999999999999988753

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=96.98  E-value=0.00073  Score=47.21  Aligned_cols=23  Identities=35%  Similarity=0.521  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|+|||||++.+.+-.
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          28 IVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68899999999999999887654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=96.97  E-value=0.00077  Score=47.13  Aligned_cols=23  Identities=43%  Similarity=0.515  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|+|||||++.+.+..
T Consensus        32 ~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          32 FVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.97  E-value=0.00066  Score=45.77  Aligned_cols=24  Identities=42%  Similarity=0.595  Sum_probs=16.5

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ....+++.|++|+|||+|++++..
T Consensus        23 ~~~~~ll~G~~G~GKT~ll~~~~~   46 (185)
T PF13191_consen   23 SPRNLLLTGESGSGKTSLLRALLD   46 (185)
T ss_dssp             ----EEE-B-TTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998764

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.97  E-value=0.00078  Score=46.83  Aligned_cols=23  Identities=43%  Similarity=0.528  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          28 FLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999998753

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK04195 replication factor C large subunit; Provisional

Probab=96.96  E-value=0.0023  Score=50.06  Aligned_cols=24  Identities=42%  Similarity=0.623  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .-.+++.|++|+||||+++.+...
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~e   62 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALAND   62 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999999764

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=96.96  E-value=0.0008  Score=47.24  Aligned_cols=23  Identities=48%  Similarity=0.509  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          28 ITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            67899999999999999998764

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK00625 shikimate kinase; Provisional

Probab=96.96  E-value=0.00081  Score=45.44  Aligned_cols=21  Identities=24%  Similarity=0.423  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      +|+++|.+||||||+...+..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~   22 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAK   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998854

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=96.96  E-value=0.00082  Score=46.66  Aligned_cols=23  Identities=43%  Similarity=0.553  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|+|||||++.+.+..
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          28 VVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            67899999999999999998754

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=96.95  E-value=0.00072  Score=45.79  Aligned_cols=20  Identities=25%  Similarity=0.514  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 031704           16 LLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~   35 (154)
                      |+++|+|||||||+..++..
T Consensus         2 i~i~G~pGsGKst~a~~la~   21 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVE   21 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999998864

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=96.95  E-value=0.00083  Score=46.58  Aligned_cols=23  Identities=26%  Similarity=0.338  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|+|||||++.+.+..
T Consensus        28 ~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          28 IFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998754

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=96.94  E-value=0.00084  Score=46.90  Aligned_cols=23  Identities=39%  Similarity=0.510  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|+|||||++.+.+..
T Consensus        33 ~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        33 IVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            67899999999999999998764

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=96.94  E-value=0.00084  Score=45.30  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .+|+++|++|+||||+...+...
T Consensus         5 ~~I~liG~~GaGKStl~~~La~~   27 (172)
T PRK05057          5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (172)
T ss_pred             CEEEEECCCCcCHHHHHHHHHHH
Confidence            37999999999999999998753

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=96.94  E-value=0.00073  Score=50.50  Aligned_cols=23  Identities=39%  Similarity=0.508  Sum_probs=19.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSDTF   38 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~~   38 (154)
                      +.++||+||||||+++.+-+-..
T Consensus        34 ~~lLGPSGcGKTTlLR~IAGfe~   56 (352)
T COG3842          34 VTLLGPSGCGKTTLLRMIAGFEQ   56 (352)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            67899999999999999987543

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=96.94  E-value=0.00085  Score=47.24  Aligned_cols=23  Identities=26%  Similarity=0.380  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|+|||||++.+.+-.
T Consensus        28 ~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          28 IVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68899999999999999998754

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	154
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		3e-41
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		2e-39
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		2e-39
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		4e-39
4fmc_B	171	Espg-Rab1 Complex Length = 171		4e-39
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		6e-39
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		7e-39
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		1e-38
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		1e-38
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		2e-38
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		2e-38
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		4e-38
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		4e-38
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		7e-38
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		1e-35
4fmc_F	117	Espg-Rab1 Complex Length = 117		1e-34
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		3e-34
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		4e-34
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		1e-33
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		4e-33
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		9e-33
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		2e-32
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		3e-32
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		3e-32
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		5e-32
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		3e-31
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		1e-30
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		1e-30
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-30
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		6e-30
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		7e-30
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		2e-29
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		2e-29
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		4e-29
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		5e-29
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		6e-29
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		7e-29
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		8e-29
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		2e-28
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		2e-28
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		2e-28
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		4e-28
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		1e-27
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		4e-27
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		4e-27
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		9e-27
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		1e-26
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		3e-26
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		4e-26
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		4e-25
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		1e-24
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		1e-24
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		2e-23
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		3e-23
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		4e-23
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		1e-22
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		1e-22
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		3e-22
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		3e-22
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		3e-22
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		4e-22
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		6e-22
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		6e-22
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		7e-22
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		7e-22
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		8e-22
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		8e-22
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		9e-22
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		1e-21
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		1e-21
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		1e-21
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		1e-21
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		2e-21
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		2e-21
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		2e-21
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		3e-21
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		5e-21
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		6e-21
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		7e-21
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		8e-21
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		9e-21
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		2e-20
2efc_B	181	Ara7-GdpATVPS9A Length = 181		3e-20
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		3e-20
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		7e-20
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		7e-20
1vg1_A	185	Gdp-bound Rab7 Length = 185		9e-20
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		2e-19
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		2e-19
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		2e-19
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		4e-19
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		7e-19
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		1e-18
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		2e-18
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		3e-18
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		3e-18
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		2e-17
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		5e-17
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		8e-17
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		1e-16
2bku_A	177	Kap95p:rangtp Complex Length = 177		2e-16
1byu_A	216	Canine Gdp-Ran Length = 216		3e-16
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		7e-16
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		8e-16
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		9e-16
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		1e-15
1s1c_A	183	Crystal Structure Of The Complex Between The Human		1e-15
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		1e-15
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		1e-15
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		1e-15
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		1e-15
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		1e-15
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		1e-15
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		2e-15
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		3e-15
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		3e-15
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		3e-15
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		3e-15
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		3e-15
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		3e-15
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		3e-15
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		3e-15
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		4e-15
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		5e-15
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		5e-15
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		6e-15
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		6e-15
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		6e-15
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		7e-15
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		9e-15
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		9e-15
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		9e-15
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		9e-15
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		1e-14
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		1e-14
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		1e-14
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		1e-14
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		1e-14
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		1e-14
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		1e-14
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		2e-14
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		2e-14
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		2e-14
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		3e-14
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		3e-14
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		4e-14
3icq_B	171	Karyopherin Nuclear State Length = 171		4e-14
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		5e-14
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		6e-14
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		7e-14
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		9e-14
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		1e-13
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		1e-13
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		2e-13
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		2e-13
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		4e-13
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		2e-12
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		3e-12
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		3e-12
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		4e-12
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-12
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		4e-12
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		5e-12
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		6e-12
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		6e-12
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		7e-12
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		7e-12
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		7e-12
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		7e-12
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		7e-12
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		8e-12
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		8e-12
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		8e-12
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		8e-12
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		8e-12
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		8e-12
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		9e-12
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		9e-12
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		9e-12
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		9e-12
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		9e-12
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		9e-12
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		9e-12
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		1e-11
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		1e-11
1mh1_A	186	Small G-Protein Length = 186		1e-11
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		1e-11
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		1e-11
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		1e-11
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		1e-11
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		1e-11
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		1e-11
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		1e-11
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		1e-11
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		3e-11
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		3e-11
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		3e-11
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		3e-11
2kb0_A	178	Cdc42(T35a) Length = 178		3e-11
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		3e-11
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		4e-11
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		5e-11
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		5e-11
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		5e-11
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		6e-11
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		6e-11
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		1e-10
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		1e-10
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		2e-10
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		2e-10
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-10
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-10
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		4e-10
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		4e-10
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		6e-10
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		6e-10
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		7e-10
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		7e-10
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		7e-10
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		8e-10
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		9e-10
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		1e-09
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		2e-09
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		2e-09
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		2e-09
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		3e-09
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		4e-09
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		5e-09
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		5e-09
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		6e-09
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		7e-09
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		7e-09
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		8e-09
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		2e-08
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		2e-08
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		2e-08
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		2e-08
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		2e-08
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		2e-08
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		3e-08
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		3e-08
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		3e-08
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		3e-08
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		4e-08
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-08
4q21_A	189	Molecular Switch For Signal Transduction: Structura		5e-08
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		5e-08
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		5e-08
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		6e-08
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		6e-08
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		6e-08
1wq1_R	166	Ras-Rasgap Complex Length = 166		6e-08
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		6e-08
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		6e-08
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		6e-08
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		6e-08
6q21_A	171	Molecular Switch For Signal Transduction: Structura		6e-08
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		6e-08
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		6e-08
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		7e-08
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		7e-08
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		8e-08
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		8e-08
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		9e-08
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		9e-08
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		9e-08
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-07
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		1e-07
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		1e-07
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		1e-07
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		1e-07
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		1e-07
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		1e-07
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		1e-07
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		2e-07
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		2e-07
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		2e-07
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		2e-07
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		2e-07
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		2e-07
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		2e-07
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		2e-07
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		2e-07
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-07
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		2e-07
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		2e-07
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		2e-07
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		2e-07
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-07
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		2e-07
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		2e-07
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		3e-07
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		3e-07
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		3e-07
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		3e-07
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		3e-07
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		3e-07
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		3e-07
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		4e-07
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		6e-07
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		6e-07
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		6e-07
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		6e-07
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		6e-07
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		7e-07
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		7e-07
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		7e-07
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		8e-07
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		8e-07
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		8e-07
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		8e-07
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		9e-07
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		9e-07
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-06
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		1e-06
3bh6_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		2e-06
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-06
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		8e-06
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		2e-05
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		2e-05
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		2e-05
2h57_A	190	Crystal Structure Of Human Adp-Ribosylation Factor-		5e-05
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		5e-05
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		1e-04
4dcn_A	166	Crystal Structure Analysis Of The Arfaptin2 Bar Dom		2e-04
1upt_A	171	Structure Of A Complex Of The Golgin-245 Grip Domai		2e-04
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		2e-04
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		4e-04
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		4e-04
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		5e-04
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		7e-04
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		7e-04
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		8e-04
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		8e-04

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  163 bits (413), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 80/119 (67%), Positives = 96/119 (80%), Gaps = 2/119 (1%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           RFRTLT SYYRGAQG+I+VYDVTRRDTF  L D W  E++ Y T  D +  LVGNK+DK
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNXLVGNKIDK 133

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  157 bits (398), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 82/128 (64%), Positives = 99/128 (77%), Gaps = 3/128 (2%)
Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMK 62
           S+   E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +K
Sbjct: 24  SSXNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 83
Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
           L IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  K
Sbjct: 84  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNK 141
Query: 123 LLVGNKVD 130
           LLVGNK D
Sbjct: 142 LLVGNKCD 149

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  157 bits (397), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 82/128 (64%), Positives = 99/128 (77%), Gaps = 3/128 (2%)
Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMK 62
           S+   E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +K
Sbjct: 7   SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 66
Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
           L IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  K
Sbjct: 67  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNK 124
Query: 123 LLVGNKVD 130
           LLVGNK D
Sbjct: 125 LLVGNKCD 132

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  156 bits (395), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 81/128 (63%), Positives = 99/128 (77%), Gaps = 3/128 (2%)
Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMK 62
           S+   E+DYLFKLLLIGDSGVGK+ LLL F  DT+ E    TIGVDFKI+ + L GK +K
Sbjct: 7   SSMNPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 66
Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
           L IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  K
Sbjct: 67  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNK 124
Query: 123 LLVGNKVD 130
           LLVGNK D
Sbjct: 125 LLVGNKCD 132

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  156 bits (395), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 81/123 (65%), Positives = 97/123 (78%), Gaps = 3/123 (2%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWD
Sbjct: 2   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  KLLVGN
Sbjct: 62  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGN 119
Query: 128 KVD 130
           K D
Sbjct: 120 KCD 122

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  155 bits (393), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 81/123 (65%), Positives = 97/123 (78%), Gaps = 3/123 (2%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWD
Sbjct: 21  EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 80
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  KLLVGN
Sbjct: 81  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGN 138
Query: 128 KVD 130
           K D
Sbjct: 139 KCD 141

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  155 bits (393), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 82/125 (65%), Positives = 97/125 (77%), Gaps = 3/125 (2%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           E+DYLFKLLLIGDSGVGKS LLL F  DT+ +    TIGVDFKI+ ++L  K +KL IWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWD 64
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQERFRT+TSSYYRGA GII+VYDVT RD+F N+   W +EID Y+  ++  KLLVGN
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQ-WIQEIDRYAM-ENVNKLLVGN 122
Query: 128 KVDKV 132
           K D V
Sbjct: 123 KCDLV 127

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  155 bits (391), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/123 (65%), Positives = 97/123 (78%), Gaps = 3/123 (2%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQERFRT+TSSYYRGA GII+VYDVT ++++ N+   W +EID Y++ ++  KLLVGN
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYAS-ENVNKLLVGN 122
Query: 128 KVD 130
           K D
Sbjct: 123 KSD 125

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  155 bits (391), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/123 (65%), Positives = 97/123 (78%), Gaps = 3/123 (2%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWD
Sbjct: 5   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQERFRT+TSSYYRGA GII+VYDVT ++++ N+   W +EID Y++ ++  KLLVGN
Sbjct: 65  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYAS-ENVNKLLVGN 122
Query: 128 KVD 130
           K D
Sbjct: 123 KSD 125

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  154 bits (389), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 81/123 (65%), Positives = 98/123 (79%), Gaps = 3/123 (2%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           E+DYLFKLLLIG+SGVGKS LLL F+ DT+  +   TIGVDFKIK V L GK +KL IWD
Sbjct: 4   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQERFRT+TSSYYRG+ GII+VYDVT +++F N   +W +EID Y+T+   +KLLVGN
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATST-VLKLLVGN 121
Query: 128 KVD 130
           K D
Sbjct: 122 KCD 124

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  154 bits (388), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 81/123 (65%), Positives = 98/123 (79%), Gaps = 3/123 (2%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           E+DYLFKLLLIG+SGVGKS LLL F+ DT+  +   TIGVDFKIK V L GK +KL IWD
Sbjct: 4   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQERFRT+TSSYYRG+ GII+VYDVT +++F N   +W +EID Y+T+   +KLLVGN
Sbjct: 64  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATST-VLKLLVGN 121
Query: 128 KVD 130
           K D
Sbjct: 122 KCD 124

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  153 bits (387), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 81/123 (65%), Positives = 98/123 (79%), Gaps = 3/123 (2%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           E+DYLFKLLLIG+SGVGKS LLL F+ DT+  +   TIGVDFKIK V L GK +KL IWD
Sbjct: 17  EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 76
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQERFRT+TSSYYRG+ GII+VYDVT +++F N   +W +EID Y+T+   +KLLVGN
Sbjct: 77  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATST-VLKLLVGN 134
Query: 128 KVD 130
           K D
Sbjct: 135 KCD 137

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  153 bits (387), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 80/123 (65%), Positives = 96/123 (78%), Gaps = 3/123 (2%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           E+D LFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWD
Sbjct: 2   EYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  KLLVGN
Sbjct: 62  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGN 119
Query: 128 KVD 130
           K D
Sbjct: 120 KCD 122

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  152 bits (384), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 80/123 (65%), Positives = 96/123 (78%), Gaps = 3/123 (2%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWD
Sbjct: 4   EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  KLLVG 
Sbjct: 64  TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGI 121
Query: 128 KVD 130
           K D
Sbjct: 122 KCD 124

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  144 bits (364), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/117 (64%), Positives = 91/117 (77%), Gaps = 3/117 (2%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           FRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  KLLVGNK D
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGNKCD 115

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  141 bits (356), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/116 (64%), Positives = 90/116 (77%), Gaps = 3/116 (2%)
Query: 16  LLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           LLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +KL IWDTAGQERF
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           RT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y++ ++  KLLVGNK D
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGNKCD 114

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  140 bits (353), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 75/133 (56%), Positives = 96/133 (72%), Gaps = 12/133 (9%)
Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIW 66
           +++D+LFKLL+IGDSGVGKS+LLL F  +TF      TIGVDFKI+ V + G+K+KL IW
Sbjct: 4   RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 63
Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC---IKL 123
           DTAGQERFRT+TS+YYRG  G+I+VYDVT  ++F N+   W  EI     NQ+C    ++
Sbjct: 64  DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR-WLHEI-----NQNCDDVCRI 117
Query: 124 LVGNKVDKVCPWR 136
           LVGNK D   P R
Sbjct: 118 LVGNKNDD--PER 128

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  140 bits (352), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 74/130 (56%), Positives = 94/130 (72%), Gaps = 3/130 (2%)
Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKK 60
           ASS + + +D + K+LLIGDSGVGKS LL+ F  D F      TIG+DFKIK V + GKK
Sbjct: 9   ASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK 68
Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +KL +WDTAGQERFRT+T++YYRGA GII+VYDVT   TFTN+   W K ++ ++ N + 
Sbjct: 69  VKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEA 126
Query: 121 IKLLVGNKVD 130
             LLVGNK D
Sbjct: 127 QLLLVGNKSD 136

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  138 bits (347), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/122 (54%), Positives = 92/122 (75%), Gaps = 3/122 (2%)
Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDT 68
           +DYLFKLLLIGDSGVGK+ +L  F+ D F      TIG+DFKI+ + L GK++KL IWDT
Sbjct: 5   YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64
Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQERFRT+T++YYRGA GI++VYD+T   +F N+ + W + I+ +++  D  K+++GNK
Sbjct: 65  AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHAS-ADVEKMILGNK 122
Query: 129 VD 130
            D
Sbjct: 123 CD 124

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  136 bits (343), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 66/122 (54%), Positives = 91/122 (74%), Gaps = 3/122 (2%)
Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDT 68
            DYLFKLLLIGDSGVGK+ +L  F+ D F      TIG+DFKI+ + L GK++KL IWDT
Sbjct: 3   MDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 62
Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQERFRT+T++YYRGA GI++VYD+T   +F N+ + W + I+ +++  D  K+++GNK
Sbjct: 63  AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHAS-ADVEKMILGNK 120
Query: 129 VD 130
            D
Sbjct: 121 CD 122

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  135 bits (340), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 88/121 (72%), Gaps = 3/121 (2%)
Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
           D + K+LLIGDSGVGKS LL+ F  D F      TIG+DFKIK V + GKK+KL IWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQERFRT+T++YYRGA GII+VYD+T   TFTN+   W K ++ ++ N +   LLVGNK 
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKS 118
Query: 130 D 130
           D
Sbjct: 119 D 119

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  134 bits (338), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 88/121 (72%), Gaps = 3/121 (2%)
Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
           D + K+LLIGDSGVGKS LL+ F  D F      TIG+DFKIK V + GKK+KL IWDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQERFRT+T++YYRGA GII+VYD+T   TFTN+   W K ++ ++ N +   LLVGNK 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKS 118
Query: 130 D 130
           D
Sbjct: 119 D 119

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  134 bits (336), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 71/121 (58%), Positives = 88/121 (72%), Gaps = 3/121 (2%)
Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
           D + K+LLIGDSGVGKS LL+ F  D F      TIG+DFKIK V + GKK+KL +WDTA
Sbjct: 1   DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQERFRT+T++YYRGA GII+VYDVT   TFTN+   W K ++ ++ N +   LLVGNK 
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKS 118
Query: 130 D 130
           D
Sbjct: 119 D 119

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  133 bits (335), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/126 (53%), Positives = 94/126 (74%), Gaps = 3/126 (2%)
Query: 6   SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLA 64
           S +  D+  ++++IG  GVGK++L+  FT DTF E    T+GVDFKIK V L GKK++L 
Sbjct: 19  SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQ 78
Query: 65  IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL 124
           IWDTAGQERF ++TS+YYR A+GII+VYD+T+++TF +L   W K ID Y++ +D   LL
Sbjct: 79  IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYAS-EDAELLL 136
Query: 125 VGNKVD 130
           VGNK+D
Sbjct: 137 VGNKLD 142

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  133 bits (334), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 70/119 (58%), Positives = 87/119 (73%), Gaps = 3/119 (2%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           + K+LLIGDSGVGKS LL+ F  D F      TIG+DFKIK V + GKK+KL +WDTAGQ
Sbjct: 7   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           ERFRT+T++YYRGA GII+VYDVT   TFTN+   W K ++ ++ N +   LLVGNK D
Sbjct: 67  ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSD 123

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  130 bits (326), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/126 (50%), Positives = 92/126 (73%), Gaps = 3/126 (2%)
Query: 6   SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLA 64
           S +++D+LFK++LIG++GVGK+ L+  FT   F      TIGVDF IK V + G+K+KL 
Sbjct: 19  SMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQ 78
Query: 65  IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL 124
           IWDTAGQERFR++T SYYR A  +I+ YD+T  ++F  L + W +EI+ Y++N+  I +L
Sbjct: 79  IWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPE-WLREIEQYASNK-VITVL 136
Query: 125 VGNKVD 130
           VGNK+D
Sbjct: 137 VGNKID 142

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/133 (48%), Positives = 91/133 (68%), Gaps = 7/133 (5%)
Query: 7   QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAI 65
           Q  FDY+FKLL+IG+S VGK++ L  +  DTF      T+G+DFK+K V    K++KL I
Sbjct: 17  QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQI 76
Query: 66  WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLV 125
           WDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D WA +I  YS +   + +LV
Sbjct: 77  WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WATQIKTYSWDNAQV-ILV 134
Query: 126 GNKVD----KVCP 134
           GNK D    +V P
Sbjct: 135 GNKCDMEEERVVP 147

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  128 bits (321), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/131 (48%), Positives = 88/131 (67%), Gaps = 3/131 (2%)
Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGK 59
           + S+T+   + Y+FK ++IGD GVGKS LL  FT   F    P TIGV+F  + + + G+
Sbjct: 3   LGSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ 62
Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
           K+KL IWDTAGQERFR +T SYYRGA G +MVYD+TRR T+ +L+       +L  TN +
Sbjct: 63  KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPN 120
Query: 120 CIKLLVGNKVD 130
            + +L+GNK D
Sbjct: 121 TVIILIGNKAD 131

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/122 (51%), Positives = 88/122 (72%), Gaps = 3/122 (2%)
Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDT 68
           + YLFK ++IGD+GVGKS LLL FT   F+ +   TIGV+F  + + + GK++KL IWDT
Sbjct: 7   YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 66
Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQE FR++T SYYRGA G ++VYD+TRRDTF +L   W ++   +S N + + +L+GNK
Sbjct: 67  AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHS-NSNMVIMLIGNK 124
Query: 129 VD 130
            D
Sbjct: 125 SD 126

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  126 bits (316), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 64/130 (49%), Positives = 90/130 (69%), Gaps = 3/130 (2%)
Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKK 60
           A  T   E+DYLFK++LIGDSGVGKS LL  FT + F  E   TIGV+F  + + + GK 
Sbjct: 18  AMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 77
Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +K  IWDTAGQER+R +TS+YYRGA G ++VYD+ +  T+ N+ + W KE+  ++ + + 
Sbjct: 78  IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNI 135
Query: 121 IKLLVGNKVD 130
           + +LVGNK D
Sbjct: 136 VIMLVGNKSD 145

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  125 bits (315), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 65/123 (52%), Positives = 88/123 (71%), Gaps = 4/123 (3%)
Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKM-KLAIWD 67
           +DYLFK++LIGDSGVGKS LL  FT D F  E   TIGV+F  K + L   K+ K  IWD
Sbjct: 4   YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQER+R +TS+YYRGA G ++VYD+T++++F N+ + W KE+   + + + + LLVGN
Sbjct: 64  TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKEL-RDNADSNIVILLVGN 121
Query: 128 KVD 130
           K D
Sbjct: 122 KSD 124

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  124 bits (311), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/120 (52%), Positives = 87/120 (72%), Gaps = 3/120 (2%)
Query: 12  YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAG 70
           YLFK ++IGD+GVGKS LLL FT   F+ +   TIGV+F  + V + GK++KL IWDTAG
Sbjct: 20  YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           QE FR++T SYYRGA G ++VYD+TRR+TF +L   W ++   +S++   I +L+GNK D
Sbjct: 80  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTS-WLEDARQHSSSNMVI-MLIGNKSD 137

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  124 bits (311), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/122 (48%), Positives = 87/122 (71%), Gaps = 3/122 (2%)
Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
           FDY+FK+L+IG+S VGK++ L  +  D+F      T+G+DFK+K +    K++KL IWDT
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQER+RT+T++YYRGA G I++YD+T  ++F  + D W+ +I  YS +   + LLVGNK
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQV-LLVGNK 119
Query: 129 VD 130
            D
Sbjct: 120 CD 121

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  123 bits (309), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 59/130 (45%), Positives = 90/130 (69%), Gaps = 3/130 (2%)
Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK 60
            S    +++D+LFKL+L+GD+ VGK+ ++  F +  F E    TIGVDF +K + + GK+
Sbjct: 18  GSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKR 77
Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +KL IWDTAGQERFRT+T SYYR A G I+ YD+T+R +F ++   W +++  Y+   + 
Sbjct: 78  VKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPH-WIEDVRKYA-GSNI 135
Query: 121 IKLLVGNKVD 130
           ++LL+GNK D
Sbjct: 136 VQLLIGNKSD 145

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  123 bits (308), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 62/128 (48%), Positives = 85/128 (66%), Gaps = 3/128 (2%)
Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMK 62
           +T+   + Y+FK ++IGD GVGKS LL  FT   F    P TIGV+F  + + + G+K+K
Sbjct: 21  ATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIK 80
Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
           L IWDTAGQ RFR +T SYYRGA G +MVYD+TRR T+ +L+       +L  TN + + 
Sbjct: 81  LQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPNTVI 138
Query: 123 LLVGNKVD 130
           +L+GNK D
Sbjct: 139 ILIGNKAD 146

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  122 bits (307), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 63/130 (48%), Positives = 89/130 (68%), Gaps = 3/130 (2%)
Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKK 60
           A  T   E+DYLFK++LIGDSGVGKS LL  FT + F  E   TIGV+F  + + + GK 
Sbjct: 18  AMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 77
Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +K  IWDTAG ER+R +TS+YYRGA G ++VYD+ +  T+ N+ + W KE+  ++ + + 
Sbjct: 78  IKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNI 135
Query: 121 IKLLVGNKVD 130
           + +LVGNK D
Sbjct: 136 VIMLVGNKSD 145

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  122 bits (307), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 61/122 (50%), Positives = 87/122 (71%), Gaps = 3/122 (2%)
Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
           +DYLFK++LIGDSGVGKS LL  FT + F  E   TIGV+F  + + + GK +K  IWDT
Sbjct: 17  YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 76
Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQER+R +TS+YYRGA G ++VYD+ +  T+ N+ + W KE+  ++ + + + +LVGNK
Sbjct: 77  AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIMLVGNK 134
Query: 129 VD 130
            D
Sbjct: 135 SD 136

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  122 bits (306), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 61/122 (50%), Positives = 87/122 (71%), Gaps = 3/122 (2%)
Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
           +DYLFK++LIGDSGVGKS LL  FT + F  E   TIGV+F  + + + GK +K  IWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQER+R +TS+YYRGA G ++VYD+ +  T+ N+ + W KE+  ++ + + + +LVGNK
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIMLVGNK 119
Query: 129 VD 130
            D
Sbjct: 120 SD 121

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  121 bits (303), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/129 (47%), Positives = 89/129 (68%), Gaps = 7/129 (5%)
Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
           DY+FKLLLIG+S VGK++ L  +  D+F      T+G+DFK+K V    K++KL IWDTA
Sbjct: 20  DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQER+RT+T++YYRGA G +++YD+  +++F  + D WA +I  YS +   + +LVGNK 
Sbjct: 80  GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQD-WATQIKTYSWDNAQV-ILVGNKC 137
Query: 130 D----KVCP 134
           D    +V P
Sbjct: 138 DLEDERVVP 146

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  121 bits (303), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/123 (49%), Positives = 87/123 (70%), Gaps = 3/123 (2%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           E+DYLFK++LIGDSGVGKS LL  FT + F  E   TIGV+F  + + + GK +K  IWD
Sbjct: 4   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 63
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAG ER+R +TS+YYRGA G ++VYD+ +  T+ N+ + W KE+  ++ + + + +LVGN
Sbjct: 64  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIMLVGN 121
Query: 128 KVD 130
           K D
Sbjct: 122 KSD 124

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  121 bits (303), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/127 (48%), Positives = 87/127 (68%), Gaps = 3/127 (2%)
Query: 5   TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKL 63
           T   E+DYLFK++LIGDSGVGKS LL  FT + F  E   TIGV+F  + + + GK +K 
Sbjct: 3   TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKA 62
Query: 64  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL 123
            IWDTAG ER+R +TS+YYRGA G ++VYD+ +  T+ N+ + W KE+  ++ + + +  
Sbjct: 63  QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIX 120
Query: 124 LVGNKVD 130
           LVGNK D
Sbjct: 121 LVGNKSD 127

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  120 bits (300), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 61/123 (49%), Positives = 86/123 (69%), Gaps = 3/123 (2%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           E+DYLFK++LIGDSGVGKS LL  FT + F  E   TIGV+F  + + + GK +K  IWD
Sbjct: 1   EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 60
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAG ER+R +TS+YYRGA G ++VYD+ +  T+ N+ + W KE+  ++ + + +  LVGN
Sbjct: 61  TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIXLVGN 118
Query: 128 KVD 130
           K D
Sbjct: 119 KSD 121

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  118 bits (296), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/122 (47%), Positives = 84/122 (68%), Gaps = 3/122 (2%)
Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
           FDY FK+L+IG+S VGK++ L  +  D+F      T+G+DFK+K +    K++KL IWDT
Sbjct: 5   FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AG ER+RT+T++YYRGA G I+ YD+T  ++F  + D W+ +I  YS +   + LLVGNK
Sbjct: 65  AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQD-WSTQIKTYSWDNAQV-LLVGNK 122
Query: 129 VD 130
            D
Sbjct: 123 CD 124

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  117 bits (292), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 87/124 (70%), Gaps = 3/124 (2%)
Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIW 66
           + +D+LFK L+IG++G GKS LL  F    F++ S  TIGV+F  K + +GGK +KL IW
Sbjct: 6   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 65
Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
           DTAGQERFR++T SYYRGA G ++VYD+T R+T+  L + W  +  + ++ Q+ + +L G
Sbjct: 66  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLAS-QNIVIILCG 123
Query: 127 NKVD 130
           NK D
Sbjct: 124 NKKD 127

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  117 bits (292), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 87/124 (70%), Gaps = 3/124 (2%)
Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIW 66
           + +D+LFK L+IG++G GKS LL  F    F++ S  TIGV+F  K + +GGK +KL IW
Sbjct: 5   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64
Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
           DTAGQERFR++T SYYRGA G ++VYD+T R+T+  L + W  +  + ++ Q+ + +L G
Sbjct: 65  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLAS-QNIVIILCG 122
Query: 127 NKVD 130
           NK D
Sbjct: 123 NKKD 126

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  115 bits (288), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 62/121 (51%), Positives = 82/121 (67%), Gaps = 3/121 (2%)
Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTA 69
           D+LFK L+IG +G GKS LL  F  + F++ S  TIGV+F  + V +GGK +KL IWDTA
Sbjct: 23  DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQERFR++T SYYRGA G ++VYD+T R+T+ +LA        L S N   + +L GNK 
Sbjct: 83  GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKK 140
Query: 130 D 130
           D
Sbjct: 141 D 141

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 84/124 (67%), Gaps = 5/124 (4%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           ++DYLFK++LIGDSGVGKS LL  FT+D F  E   TIGV+F  + + +  KK+K  IWD
Sbjct: 6   DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWD 65
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL-LVG 126
           TAG ER+R +TS+YYRGA G ++VYD+++  ++ N  + W  E  L     D + + L+G
Sbjct: 66  TAGLERYRAITSAYYRGAVGALIVYDISKSSSYEN-CNHWLTE--LRENADDNVAVGLIG 122
Query: 127 NKVD 130
           NK D
Sbjct: 123 NKSD 126

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  114 bits (284), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/132 (45%), Positives = 87/132 (65%), Gaps = 5/132 (3%)
Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGK 59
           M+S     ++D LFK++LIGDSGVGKS LL  FT + F  +   TIGV+F  + + + GK
Sbjct: 1   MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGK 60
Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
           ++K  IWDTAGQER+R +TS+YYRGA G ++VYD+++  ++ N  + W  E  L     D
Sbjct: 61  RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSE--LRENADD 117
Query: 120 CIKL-LVGNKVD 130
            + + L+GNK D
Sbjct: 118 NVAVGLIGNKSD 129

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  113 bits (283), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 86/124 (69%), Gaps = 3/124 (2%)
Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIW 66
           + +D+LFK L+IG++G GKS LL  F    F++ S  TIGV+F  K + +GGK +KL IW
Sbjct: 3   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 62
Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
           DTAG ERFR++T SYYRGA G ++VYD+T R+T+  L + W  +  + ++ Q+ + +L G
Sbjct: 63  DTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLAS-QNIVIILCG 120
Query: 127 NKVD 130
           NK D
Sbjct: 121 NKKD 124

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  110 bits (275), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 56/123 (45%), Positives = 82/123 (66%), Gaps = 4/123 (3%)
Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           +D  FK++L+GDSGVGK+ LL+ F    F       T+G+DF+ K + + G K+KL +WD
Sbjct: 7   YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQERFR++T +YYR A  ++++YDVT + +F N+   W  EI  Y+   D   +L+GN
Sbjct: 67  TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYA-QHDVALMLLGN 124
Query: 128 KVD 130
           KVD
Sbjct: 125 KVD 127

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/125 (46%), Positives = 85/125 (68%), Gaps = 5/125 (4%)
Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIW 66
           ++++++FK++LIG+SGVGK+ LL  FT + F   S  TIGV+F  + V LG   +K  IW
Sbjct: 5   EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 64
Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLV 125
           DTAG ER+R +TS+YYRGA G ++V+D+T+  T+  + + W KE  LY   +  I  +LV
Sbjct: 65  DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKE--LYDHAEATIVVMLV 121
Query: 126 GNKVD 130
           GNK D
Sbjct: 122 GNKSD 126

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/125 (46%), Positives = 85/125 (68%), Gaps = 5/125 (4%)
Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIW 66
           ++++++FK++LIG+SGVGK+ LL  FT + F   S  TIGV+F  + V LG   +K  IW
Sbjct: 20  EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 79
Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLV 125
           DTAG ER+R +TS+YYRGA G ++V+D+T+  T+  + + W KE  LY   +  I  +LV
Sbjct: 80  DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKE--LYDHAEATIVVMLV 136
Query: 126 GNKVD 130
           GNK D
Sbjct: 137 GNKSD 141

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K+ L+GD+GVGKS+++  F  D F+  +SPTIG  F  K V  G +  K  IWDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           RF +L   YYRG+   ++VYD+T++D+F  L   W KE+  +   ++ +  + GNK D
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKK-WVKELKEHGP-ENIVMAIAGNKCD 139

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  103 bits (258), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 78/120 (65%), Gaps = 3/120 (2%)
Query: 12  YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAG 70
           Y FK++L+G+  VGK++L+L +  + F +    T+G  F  K + +GGK++ LAIWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           QERF  L   YYR + G I+VYD+T  D+F  + + W KE+     N+ C+  +VGNK+D
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICL-CIVGNKID 122

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  103 bits (257), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 54/118 (45%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            KL+L+G++ VGKS+++L F S+ F E   PTIG  F  + V +    +K  IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           RF +L   YYR AQ  ++VYDVT+  +F   A  W KE+   ++ +D I  LVGNK+D
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIK-ARHWVKELHEQAS-KDIIIALVGNKID 119

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+G+S VGKS+L+L F    F E    TIG  F  + V L    +K  IWDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           R+ +L   YYRGAQ  I+VYD+T ++TF   A  W KE+   ++    I  L GNK D
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFAR-AKTWVKELQRQASPSIVIA-LAGNKAD 124

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+G+S VGKS+L+L F    F E    TIG  F  + V L    +K  IWDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           R+ +L   YYRGAQ  I+VYD+T  DTF   A  W KE+   ++  + +  L GNK D
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQAS-PNIVIALAGNKAD 119

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  100 bits (250), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
Query: 12  YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAG 70
           Y FK++L+G+  VGK++L+L +  + F +    T+   F  K + +GGK++ LAIWDTAG
Sbjct: 19  YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           QERF  L   YYR + G I+VYD+T  D+F  + + W KE+     N+ C+  +VGNK+D
Sbjct: 79  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICL-CIVGNKID 136

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  100 bits (250), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/120 (42%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
Query: 12  YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAG 70
           Y FK++L+G+  VGK++L+L +  + F +    T+   F  K + +GGK++ LAIWDTAG
Sbjct: 5   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           QERF  L   YYR + G I+VYD+T  D+F  + + W KE+     N+ C+  +VGNK+D
Sbjct: 65  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICL-CIVGNKID 122

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  100 bits (249), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K+ L+GD+GVGKS+++  F  D+F+  ++PTIG  F  K V    +  K  IWDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           RFR L   YYRG+   I+VYD+T+ +TF+ L + W +E+  +      +  + GNK D
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-WVRELRQHGP-PSIVVAIAGNKCD 121

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  100 bits (248), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 53/135 (39%), Positives = 85/135 (62%), Gaps = 16/135 (11%)
Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGK-------- 59
           ++DYL KLL +GDSGVGK+T L  +T + F  +   T+G+DF+ K V    +        
Sbjct: 21  DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 80
Query: 60  --KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI--DLYS 115
             K+ L +WDTAGQERFR+LT++++R A G ++++D+T + +F N+ + W  ++  + Y 
Sbjct: 81  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYC 139
Query: 116 TNQDCIKLLVGNKVD 130
            N D +  L+GNK D
Sbjct: 140 ENPDIV--LIGNKAD 152

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 99.8 bits (247), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 80/118 (67%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +K++L GD+ VGKS+ L+    + F E +S T+GVDF++K + + G++  L +WDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           RFR++  SY+R A G++++YDVT   +F N+ + W   I+  + ++    +LVGNK D
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE-WVDMIE-DAAHETVPIMLVGNKAD 144

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 99.8 bits (247), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+G+S VGKS+L+L F    F E    TIG  F  + V L    +K  IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           R+ +L   YYRGAQ  I+VYD+T  ++F   A  W KE+   ++  + +  L GNK D
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKAD 123

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 99.4 bits (246), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 75/120 (62%), Gaps = 3/120 (2%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           +FK+++IGDS VGK+ L   F +  F + +  TIGVDF+ + V + G+++K+ +WDTAGQ
Sbjct: 29  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 72  ERFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           ERFR ++   YYR    ++ VYD T   +F +L   W +E   +    D  ++LVGNK D
Sbjct: 89  ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLP-AWIEECKQHLLANDIPRILVGNKCD 147

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 99.4 bits (246), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+G+S VGKS+L+L F    F E    TIG  F  + V L    +K  IWDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           R+ +L   YYRGAQ  I+VYD+T  ++F   A  W KE+   ++  + +  L GNK D
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKAD 123

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 99.4 bits (246), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+G+S VGKS+L+L F    F E    TIG  F  + V L    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           R+ +L   YYRGAQ  I+VYD+T  ++F   A  W KE+   ++  + +  L GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKAD 122

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 99.0 bits (245), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           +FK+++IGDS VGK+ L   F +  F + +  TIGVDF+ + V + G+++K+ +WDTAGQ
Sbjct: 20  IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 72  ERFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           ERFR ++   YYR    ++ VYD+T   +F +L   W +E   +    D  ++LVGNK D
Sbjct: 80  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGNKCD 138

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 99.0 bits (245), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 54/118 (45%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+G+S VGKS+L+L F    F E    TI   F  + V L    +K  IWDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           R+ +L   YYRGAQ  I+VYD+T  DTF   A  W KE+   ++  + +  L GNK D
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQAS-PNIVIALAGNKAD 121

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+G+S VGKS+L+L F    F E    TIG  F  + V L    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           R+ +L   YYRGAQ  I+VYD+T  ++F   A  W KE+   ++  + +  L GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKAD 122

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+G+S VGKS+L+L F    F E    TIG  F  + V L    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           R+ +L   YYRGAQ  I+VYD+T  ++F   A  W KE+   ++  + +  L GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKAD 122

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/118 (45%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+G+S VGKS+L+L F    F E    TIG  F  + V L    +K  IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           R+ +L   YYRGAQ  I+VYD+T  DTF   A  W KE+   ++  + +  L GNK D
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQAS-PNIVIALAGNKAD 121

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+G+S VGKS+L+L F    F E    TIG  F  + V L    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           R+ +L   YYRGAQ  I+VYD+T  ++F   A  W KE+   ++  + +  L GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKAD 122

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+G+S VGKS+L+L F    F E    TIG  F  + V L    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           R+ +L   YYRGAQ  I+VYD+T  ++F   A  W KE+   ++  + +  L GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKAD 122

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 89/138 (64%), Gaps = 12/138 (8%)
Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHV-------- 54
           S S  ++DYL K L +GDSGVGK+++L  +T   F  +   T+G+DF+ K V        
Sbjct: 2   SMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPD 61
Query: 55  -ALG-GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEID 112
            A+G G+++ L +WDTAG ERFR+LT++++R A G ++++D+T   +F N+ + W  ++ 
Sbjct: 62  GAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQ 120
Query: 113 LYSTNQDCIKLLVGNKVD 130
           +++ +++   +L GNK D
Sbjct: 121 MHAYSENPDIVLCGNKSD 138

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K+ L+GD+GVGKS+++  F  D+F+  ++PTIG  F  K V    +  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           RFR L   YYRG+   I+VYD+T+ +TF+ L + W +E+  +      +  + GNK D
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-WVRELRQHGP-PSIVVAIAGNKCD 122

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 97.4 bits (241), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+G+S VGKS+L+L F    F E    TIG  F  + V L    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           R+ +L   YYRGAQ  I+VYD+T  ++F   A  W KE+   ++  + +  L GNK D
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKAD 122

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 96.7 bits (239), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/140 (39%), Positives = 87/140 (62%), Gaps = 16/140 (11%)
Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHV-------- 54
           S +  ++DYL KLL +GDSGVGK+T L  +T + F  +   T+G+DF+ K V        
Sbjct: 2   SMTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 55  ALGGK--KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI- 111
              GK  K+ L +WDTAG ERFR+LT++++R A G ++++D+T + +F N+ + W  ++ 
Sbjct: 62  GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQ 120
Query: 112 -DLYSTNQDCIKLLVGNKVD 130
            + Y  N D +  L+GNK D
Sbjct: 121 ANAYCENPDIV--LIGNKAD 138

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 96.3 bits (238), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/140 (39%), Positives = 87/140 (62%), Gaps = 16/140 (11%)
Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHV-------- 54
           S +  ++DYL KLL +GDSGVGK+T L  +T + F  +   T+G+DF+ K V        
Sbjct: 2   SMTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 55  ALGGK--KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI- 111
              GK  K+ L +WDTAG ERFR+LT++++R A G ++++D+T + +F N+ + W  ++ 
Sbjct: 62  GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQ 120
Query: 112 -DLYSTNQDCIKLLVGNKVD 130
            + Y  N D +  L+GNK D
Sbjct: 121 ANAYCENPDIV--LIGNKAD 138

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 96.3 bits (238), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+G+S VGKS+L+L F    F E    TIG  F  + V L    +K  IWDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           R+ +L   YYRGAQ  I+VYD+T  ++F   A  W KE+   ++  + +  L GNK D
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKAD 121

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 95.9 bits (237), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/140 (39%), Positives = 86/140 (61%), Gaps = 16/140 (11%)
Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHV-------- 54
           S +  ++DYL KLL +GDSGVGK+T L  +T + F  +   T+G+DF+ K V        
Sbjct: 2   SXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 55  ALGGK--KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI- 111
              GK  K+ L +WDTAG ERFR+LT++++R A G ++ +D+T + +F N+ + W  ++ 
Sbjct: 62  GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRN-WXSQLQ 120
Query: 112 -DLYSTNQDCIKLLVGNKVD 130
            + Y  N D +  L+GNK D
Sbjct: 121 ANAYCENPDIV--LIGNKAD 138

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 95.9 bits (237), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 55/140 (39%), Positives = 86/140 (61%), Gaps = 16/140 (11%)
Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHV-------- 54
           S +  ++DYL KLL +GDSGVGK+T L  +T + F  +   T+G+DF+ K V        
Sbjct: 2   SXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 55  ALGGK--KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI- 111
              GK  K+ L +WDTAG ERFR+LT++++R A G ++ +D+T + +F N+ + W  ++ 
Sbjct: 62  GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRN-WXSQLQ 120
Query: 112 -DLYSTNQDCIKLLVGNKVD 130
            + Y  N D +  L+GNK D
Sbjct: 121 ANAYCENPDIV--LIGNKAD 138

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+ +G+  VGK++++  F  DTF+     TIG+DF  K + L    ++L +WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           RFR+L  SY R +   I+VYD+T R +F N    W ++I L    +D I  LVGNK D
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTK-WIQDI-LNERGKDVIIALVGNKTD 117

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 69/117 (58%), Gaps = 3/117 (2%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+L+GD G GKS+L+L F  D F E    TIG  F  + +A+    +K  IWDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           + +L   YYRGA   I+V+DVT + +F   A  W +E+     N + +  L GNK D
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFER-AKKWVQELQAQG-NPNMVMALAGNKSD 128

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 80/123 (65%), Gaps = 5/123 (4%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++L+GD GVGKS+L+  + ++ F+  +  TIGV+F  + + + G+ + L IWDTAGQ
Sbjct: 7   LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
           ERF++L + +YRGA   ++ + V  R +F NL + W KE   Y+  +D      +++GNK
Sbjct: 67  ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGN-WQKEFIYYADVKDPEHFPFVVLGNK 125
Query: 129 VDK 131
           VDK
Sbjct: 126 VDK 128

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 92.8 bits (229), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 78/122 (63%), Gaps = 5/122 (4%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++++GDSGVGK++L+  + +  F  +   TIG DF  K V +  + + + IWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
           ERF++L  ++YRGA   ++V+DVT  +TF  L D W  E  + ++ +D      +++GNK
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 129 VD 130
           +D
Sbjct: 127 ID 128

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 92.8 bits (229), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 78/122 (63%), Gaps = 5/122 (4%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++++GDSGVGK++L+  + +  F  +   TIG DF  K V +  + + + IWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
           ERF++L  ++YRGA   ++V+DVT  +TF  L D W  E  + ++ +D      +++GNK
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 129 VD 130
           +D
Sbjct: 127 ID 128

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 92.4 bits (228), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 78/122 (63%), Gaps = 5/122 (4%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++++GDSGVGK++L+  + +  F  +   TIG DF  K V +  + + + IWDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
           ERF++L  ++YRGA   ++V+DVT  +TF  L D W  E  + ++ +D      +++GNK
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 129 VD 130
           +D
Sbjct: 127 ID 128

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 80/122 (65%), Gaps = 5/122 (4%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           LFK++L+GD GVGKS+L+  + ++ F+ +L  TIGV+F  K + + G  + + IWDTAGQ
Sbjct: 7   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
           ERFR+L + +YRG+   ++ + V    +F NL++ W KE   Y+  ++      +++GNK
Sbjct: 67  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNK 125
Query: 129 VD 130
           +D
Sbjct: 126 ID 127

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 80/122 (65%), Gaps = 5/122 (4%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           LFK++L+GD GVGKS+L+  + ++ F+ +L  TIGV+F  K + + G  + + IWDTAGQ
Sbjct: 9   LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
           ERFR+L + +YRG+   ++ + V    +F NL++ W KE   Y+  ++      +++GNK
Sbjct: 69  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNK 127
Query: 129 VD 130
           +D
Sbjct: 128 ID 129

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 79/124 (63%), Gaps = 8/124 (6%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMK-LAIWDTAG 70
           + K++++GDSGVGK++L+  + +D + ++   TIG DF  K V + G K+  + +WDTAG
Sbjct: 8   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK----LLVG 126
           QERF++L  ++YRGA   ++VYDVT   +F N+   W  E  L   N +  +    +++G
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKS-WRDEF-LVHANVNSPETFPFVILG 125
Query: 127 NKVD 130
           NK+D
Sbjct: 126 NKID 129

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 90.5 bits (223), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 79/122 (64%), Gaps = 5/122 (4%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           LFK++L+GD GVGKS+L+  + ++ F+ +L  TIGV+F  K + + G  + + IWDTAGQ
Sbjct: 11  LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
           ERFR+L + +YRG+   ++ + V    +F NL++ W KE   Y+  ++      +++GNK
Sbjct: 71  ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNK 129
Query: 129 VD 130
            D
Sbjct: 130 TD 131

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 89.4 bits (220), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 77/122 (63%), Gaps = 5/122 (4%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++++GDSGVGK++L+  + +  F  +   TIG DF  K V +  + + + IWDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
           ERF++L  ++YRGA   ++V+DVT  +TF  L D W  E  + ++ +D      +++GNK
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 129 VD 130
           +D
Sbjct: 127 ID 128

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 73/120 (60%), Gaps = 7/120 (5%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+ +G+  VGK++L+  F  D+F+     TIG+DF  K + L  + ++L +WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
           RFR+L  SY R +   ++VYD+T  ++F        K ID   T +  D I +LVGNK D
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQT----TKWIDDVRTERGSDVIIMLVGNKTD 122

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 74/120 (61%), Gaps = 7/120 (5%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+ +G+  VGK++L+  F  D+F+     TIG+DF  K + L  + ++L +WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
           RFR+L  SY R +   ++VYD+T  ++F       +K ID   T +  D I +LVGNK D
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQT----SKWIDDVRTERGSDVIIMLVGNKTD 118

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 73/120 (60%), Gaps = 7/120 (5%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+ +G+  VGK++L+  F  D+F+     TIG+DF  K + L  + ++L +WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
           RFR+L  SY R +   ++VYD+T  ++F        K ID   T +  D I +LVGNK D
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQT----TKWIDDVRTERGSDVIIMLVGNKTD 117

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 74/120 (61%), Gaps = 7/120 (5%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+ +G+  VGK++L+  F  D+F+     TIG+DF  K + L  + ++L +WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
           RFR+L  SY R +   ++VYD+T  ++F       +K ID   T +  D I +LVGNK D
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQT----SKWIDDVRTERGSDVIIMLVGNKTD 130

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 7/120 (5%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+ +G+  VGK++L+  F  D+F+     TIG+DF  K + L  + ++L +WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
           RFR+L  SY R +   ++VYD+T  ++F        K ID   T +  D I +LVGNK D
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQT----TKWIDDVRTERGSDVIIMLVGNKTD 129

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 83.2 bits (204), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 7/120 (5%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+ +G+  VGK++L+  F  D+F+     TIG+DF  K + L  + ++L +WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
           RFR+L  SY R +   ++VYD+T  ++F        K ID   T +  D I +LVGNK D
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQT----TKWIDDVRTERGSDVIIMLVGNKTD 122

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+ +G+  VGK++L+  F  D+F+     TIG+DF  K + L  + ++L +WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           RFR+L  SY R +   ++VYD+T  ++F      W  ++       D I +LVGNK D
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTK-WIDDV-RTERGSDVIIMLVGNKTD 132

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 81/145 (55%), Gaps = 7/145 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K++++G+  VGKS+++  +    F ++   TIGVDF  + + +  + ++L +WDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132
            F  +T +YYRGAQ  ++V+  T R++F  ++  W +++   +   D    LV NK+D +
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISS-WREKV--VAEVGDIPTALVQNKIDLL 122
Query: 133 ---CPWRLFLSGFWHFLLSKFYCSS 154
              C       G    L  +FY +S
Sbjct: 123 DDSCIKNEEAEGLAKRLKLRFYRTS 147

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 73/129 (56%), Gaps = 8/129 (6%)
Query: 5   TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
            +Q E    FKL+L+GD G GK+T +    +  FE+   PT+GV+    + H   G   +
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRG--PI 59
Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++  
Sbjct: 60  KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVD 130
            +L GNKVD
Sbjct: 117 IVLCGNKVD 125

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 73/129 (56%), Gaps = 8/129 (6%)
Query: 5   TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
            +Q E    FKL+L+GD G GK+T +    +  FE+   PT+GV+    + H   G   +
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRG--PI 59
Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++  
Sbjct: 60  KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVD 130
            +L GNKVD
Sbjct: 117 IVLCGNKVD 125

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 79.3 bits (194), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 8/131 (6%)
Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGK 59
           +S +Q E    FKL+L+GD G GK+T +    +  FE+    T+GV+    + H   G  
Sbjct: 5   ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-- 62
Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
            +K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++
Sbjct: 63  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCEN 119
Query: 120 CIKLLVGNKVD 130
              +L GNKVD
Sbjct: 120 IPIVLCGNKVD 130

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 79.3 bits (194), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ I  + + GK+++LA+WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 140

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 79.0 bits (193), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ I  + + GK+++LA+WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPII--LVGNKKD 140

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 121

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 122

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 121

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 68
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 123

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 120

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 69
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 124

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLL-LSFTSDTFEELSPTIGVDFK--IKHVALGGK 59
           +S +Q E    FKL+L+GD G GK+T +    T ++ ++   T+GV+    + H   G  
Sbjct: 5   ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRG-- 62
Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
            +K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++
Sbjct: 63  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCEN 119
Query: 120 CIKLLVGNKVD 130
              +L GNKVD
Sbjct: 120 IPIVLCGNKVD 130

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 122

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 78.2 bits (191), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 122

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++++G  GVGKS L L F  D F E+  PT    ++ K V L G+++++ I DTAGQ
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 76
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           E +  +  +Y+R  +G + V+ +T  ++F   AD + ++I     +++   LLVGNK D
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSD 134

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++++G  GVGKS L L F  D F E+  PT    ++ K V L G+++++ I DTAGQ
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 64
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           E +  +  +Y+R  +G + V+ +T  ++F   AD + ++I     +++   LLVGNK D
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSD 122

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++++G  GVGKS L L F  D F E+  PT    ++ K V L G+++++ I DTAGQ
Sbjct: 14  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 72
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           E +  +  +Y+R  +G + V+ +T  ++F   AD + ++I     +++   LLVGNK D
Sbjct: 73  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSD 130

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 8/129 (6%)
Query: 5   TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
            +Q E    FKL+L+GD G GK+T +    +  FE+    T+GV+    + H   G   +
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PI 59
Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++  
Sbjct: 60  KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVD 130
            +L GNKVD
Sbjct: 117 IVLCGNKVD 125

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++++G  GVGKS L L F  D F E+  PT    ++ K V L G+++++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 62
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           E +  +  +Y+R  +G + V+ +T  ++F   AD + ++I     +++   LLVGNK D
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSD 120

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 8/129 (6%)
Query: 5   TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
            +Q E    FKL+L+GD G GK+T +    +  FE+    T+GV+    + H   G   +
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PI 59
Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++  
Sbjct: 60  KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVD 130
            +L GNKVD
Sbjct: 117 IVLCGNKVD 125

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+ F+ D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L    Y     I+M + V   D+  N+ + W  E+  +  N   I  LV NK D
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPII--LVANKKD 140

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 8/129 (6%)
Query: 5   TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
            +Q E    FKL+L+GD G GK+T +    +  FE+    T+GV+    + H   G   +
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PI 59
Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++  
Sbjct: 60  KFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVD 130
            +L GNKVD
Sbjct: 117 IVLCGNKVD 125

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 77.0 bits (188), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 8/129 (6%)
Query: 5   TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
            +Q E    FKL+L+GD G GK+T +    +  FE+    T+GV+    + H   G   +
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PI 59
Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++  
Sbjct: 60  KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVD 130
            +L GNKVD
Sbjct: 117 IVLCGNKVD 125

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 72/120 (60%), Gaps = 4/120 (3%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++++G  GVGKS L L F  D F E+  PT    ++ K V L G+++++ I DTAG 
Sbjct: 7   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGL 65
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL-VGNKVD 130
           E +  +  +Y+R  +G ++V+ +T  ++FT  A+ + ++I      +D I LL VGNK D
Sbjct: 66  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAE-FREQILRVKAEEDKIPLLVVGNKSD 124

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K + +GD  VGK+ +L+S+TS+TF  +  PT+  +F   +V + G  + L +WDTAGQE
Sbjct: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGNTVNLGLWDTAGQE 65
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    YRGA   I+ + +  + ++ N+A  W  E+  Y+     I  LVG K+D
Sbjct: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII--LVGTKLD 121

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 76.6 bits (187), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 5   TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
            +Q E    FKL+L+GD G GK+T +    +  FE+    T+GV+    + H   G   +
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PI 59
Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           K  +WDTAGQE+F  L   YY  AQ  I+ +DVT R T+ N+ + W +  DL    ++  
Sbjct: 60  KFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVD 130
            +L GNKVD
Sbjct: 117 IVLCGNKVD 125

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 72/120 (60%), Gaps = 4/120 (3%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++++G  GVGKS L L F  D F E+  PT    ++ K V L G+++++ I DTAG 
Sbjct: 3   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGL 61
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL-VGNKVD 130
           E +  +  +Y+R  +G ++V+ +T  ++FT  A+ + ++I      +D I LL VGNK D
Sbjct: 62  EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAE-FREQILRVKAEEDKIPLLVVGNKSD 120

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 69/121 (57%), Gaps = 5/121 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK-KMKLAIWDTAGQ 71
            K++++GD   GK++L   F  +TF ++   TIG+DF ++ + L G   + L IWD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIW--AKEIDLYSTNQDCIKLLVGNKV 129
                +   Y  GAQG+++VYD+T   +F NL D +   K++   S  Q  +  LVGNK+
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVA-LVGNKI 125
Query: 130 D 130
           D
Sbjct: 126 D 126

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 76.3 bits (186), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+  + D F E+  PT+  ++ I  + + GK+++LA+WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 65
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 120

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 75.9 bits (185), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K + +GD  VGK+ LL+S+TS+TF  +  PT+  +F   +V + G  + L +WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQE 67
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    YRGA   I+ + +  + ++ N++  W  E+  Y+     +  LVG K+D
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIV--LVGTKLD 123

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 75.9 bits (185), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 8/129 (6%)
Query: 5   TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
            +Q E    FKL+L+GD G GK+T +    +  FE+    T+GV+    + H   G   +
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PI 59
Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           K  +WDTAGQE++  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++  
Sbjct: 60  KFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVD 130
            +L GNKVD
Sbjct: 117 IVLCGNKVD 125

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 75.9 bits (185), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+  + D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 120

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 75.9 bits (185), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 72/132 (54%), Gaps = 8/132 (6%)
Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGG 58
            S  +Q E    FKL+L+GD G GK+T +    +  FE+    T+GV+    + H   G 
Sbjct: 1   GSMAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG- 59
Query: 59  KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ 118
             +K  +WDTAG E+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    +
Sbjct: 60  -PIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCE 115
Query: 119 DCIKLLVGNKVD 130
           +   +L GNKVD
Sbjct: 116 NIPIVLCGNKVD 127

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+  + D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 118

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+  + D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 118

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 69/120 (57%), Gaps = 8/120 (6%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKMKLAIWDTAG 70
           FKL+L+GD G GK+T +    +  FE+    T+GV+    + H   G   +K  +WDTAG
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PIKFNVWDTAG 61
Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           QE+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD
Sbjct: 62  QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 118

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+  + D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 120

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 69/127 (54%), Gaps = 4/127 (3%)
Query: 6   SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIG-VDFKIKHVALGGKKMKL 63
           S +  +  +K+ LIGD GVGK+T +       FE+  + T+G V+  +  +   G  +K 
Sbjct: 4   SMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKF 63
Query: 64  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL 123
            +WDTAGQE+   L   YY GA G I+ +DVT R T  NLA  W KE      N+  I +
Sbjct: 64  NVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLAR-WVKEFQAVVGNEAPI-V 121
Query: 124 LVGNKVD 130
           +  NK+D
Sbjct: 122 VCANKID 128

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+  + D F E+  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 120

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L + F    F E+  PTI   ++ K V +  ++  L I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +F  +   Y +  QG  +VY +T + TF +L D+  + + +  T+ D   +LVGNK D
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD-DVPMILVGNKCD 119

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L + F    F +E  PTI   ++ K V +  ++  L I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +F  +   Y +  QG  +VY +T + TF +L D+  + + +  T +D   +LVGNK D
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCD 119

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L + F    F E+  PTI   ++ K V +  ++  L I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +F  +   Y +  QG  +VY +T + TF +L D+  + + +  T +D   +LVGNK D
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCD 119

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L + F    F E+  PTI   ++ K V +  ++  L I DTAG E
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 64
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +F  +   Y +  QG  +VY +T + TF +L D+  + + +  T+ D   +LVGNK D
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD-DVPMILVGNKCD 121

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+ F+ D F  +  PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +       Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 120

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++++G  GVGKS L L F  D F E+  PT    ++ K V L G+++++ I DTAG 
Sbjct: 6   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGL 64
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           E +  +  +Y+R  +G + V+ +T  ++F   AD + ++I     +++   LLVGNK D
Sbjct: 65  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSD 122

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 5   TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
            +Q E    FKL+L+GD G GK+T +    +  FE+    T+GV+    + H   G   +
Sbjct: 2   AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PI 59
Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           K  +WDTAG E+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++  
Sbjct: 60  KFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVD 130
            +L GNKVD
Sbjct: 117 IVLCGNKVD 125

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 66/118 (55%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+GD G GK+T +    +  FE+    TIGV+           ++K  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 119

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 66/118 (55%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+GD G GK+T +    +  FE+    TIGV+           ++K  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 120

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 5/131 (3%)
Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGK 59
           M++  +  E    FKL+L+GD G GK+T +    +  FE+    TIGV+           
Sbjct: 1   MSAPAANGEVP-TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFG 59
Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
           ++K  +WDTAG E+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++
Sbjct: 60  EIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHR--DLVRVCEN 116
Query: 120 CIKLLVGNKVD 130
              +L GNKVD
Sbjct: 117 IPIVLCGNKVD 127

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 72.8 bits (177), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKM 61
           SS +      + K +++GD  VGK+ LL+S+ +D F EE  PT+  D     V +GGK+ 
Sbjct: 8   SSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQY 66
Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
            L ++DTAGQE +  L    Y      ++ + V    +F N+ + W  E+  Y+ N    
Sbjct: 67  LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-- 124
Query: 122 KLLVGNKVD 130
            LL+G ++D
Sbjct: 125 FLLIGTQID 133

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 72.4 bits (176), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 8/120 (6%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKMKLAIWDTAG 70
           FKL+L+GD G GK+T +    +  FE+    T+GV+    + H   G   +K  +WDTAG
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PIKFNVWDTAG 64
Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            E+F  L   YY  AQ  I+++DVT R T+ N+ + W +  DL    ++   +L GNKVD
Sbjct: 65  LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 121

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+  + D F E+  PT+  ++ +  + + GK+++LA+WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLED 68
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I  LVGNK D
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 123

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K++L+GD G GK++LL+ F    F E  +PT+   + + ++ + GK + L IWDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDD 94
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L   +Y  A  +++ +DVT  ++F N+ + W  E++ +      I  +VG K D
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPII--VVGCKTD 149

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 42/156 (26%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGK------------- 59
           +K +L+G+S VGKS+++L  T DTF E  + TIG  F    V L                
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 60  ------------------------KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT 95
                                    +K  IWDTAGQER+ ++   YYRGA   I+V+D++
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 96  RRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
             +T  + A  W  ++ + S   + I +LV NK+DK
Sbjct: 128 NSNTL-DRAKTWVNQLKISS---NYIIILVANKIDK 159

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 4/126 (3%)
Query: 6   SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLA 64
           S        K + +GD  VGK+ +L+ +TS+ F  +  PT+  +F   +VA+ G+ + L 
Sbjct: 2   SHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGQIVNLG 60
Query: 65  IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL 124
           +WDTAGQE +  L    YRGA   ++ + +  + ++ N+   W  E+  ++ N   +  L
Sbjct: 61  LWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIV--L 118
Query: 125 VGNKVD 130
           VG K+D
Sbjct: 119 VGTKLD 124

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K + +GD  VGK+ +L+S+T +TF  +  PT+  +F   +V + G  + L +WDTAGQE
Sbjct: 7   IKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQE 65
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    YRGA   ++ + +  + ++ N+   W  E+  Y+     +  LVG K+D
Sbjct: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIV--LVGTKLD 121

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     ++D   +LVGNK D
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCD 120

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132
            +  +   Y R  +G + V+ +    +F ++   + ++I     ++D   +LVGNK D  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKSD-- 120
Query: 133 CPWR 136
            P R
Sbjct: 121 LPSR 124

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 10/134 (7%)
Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGK 59
           M SS          K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+
Sbjct: 1   MGSSHHHHHHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGE 59
Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
              L ++DTAGQE +  L    Y      ++ + V    +F N+ + W  EI        
Sbjct: 60  PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THH 114
Query: 120 CIK---LLVGNKVD 130
           C K   LLVG ++D
Sbjct: 115 CPKTPFLLVGTQID 128

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 118

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 118

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 66.2 bits (160), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 118

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 66.2 bits (160), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 118

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 66.2 bits (160), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 118

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 66.2 bits (160), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  D    +V + GK + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 145

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 66.2 bits (160), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 118

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 66.2 bits (160), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 64
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 119
Query: 130 D 130
           D
Sbjct: 120 D 120

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VXIGGEPYTLGLFDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D 130
           D
Sbjct: 118 D 118

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAGQE
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 81
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D
Sbjct: 82  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 137

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  D    +V + GK + L +WDTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 69
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 125

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 65
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 120
Query: 130 D 130
           D
Sbjct: 121 D 121

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  D    +V + GK + L +WDTAGQE
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 72
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D
Sbjct: 73  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 128

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D 130
           D
Sbjct: 118 D 118

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 63
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 64  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 118
Query: 130 D 130
           D
Sbjct: 119 D 119

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D 130
           D
Sbjct: 118 D 118

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D 130
           D
Sbjct: 118 D 118

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 118

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D 130
           D
Sbjct: 118 D 118

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D 130
           D
Sbjct: 118 D 118

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D 130
           D
Sbjct: 118 D 118

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D
Sbjct: 63  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 118

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 64
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 120

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D 130
           D
Sbjct: 118 D 118

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 65
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 66  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 120
Query: 130 D 130
           D
Sbjct: 121 D 121

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 66
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D
Sbjct: 67  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 122

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 64
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 65  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 119
Query: 130 D 130
           D
Sbjct: 120 D 120

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 66
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 121
Query: 130 D 130
           D
Sbjct: 122 D 122

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D 130
           D
Sbjct: 118 D 118

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 69
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 124
Query: 130 D 130
           D
Sbjct: 125 D 125

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 11  IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 69
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 70  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 124
Query: 130 D 130
           D
Sbjct: 125 D 125

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 10/121 (8%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L + DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLRDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D 130
           D
Sbjct: 118 D 118

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    Y      ++ + +    +F N+   W  E+  +  +     LLVG K+D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLD 118

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+  +   F E+  PT+  ++ +  V + G++++LA+WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENY-VADVEVDGRRVELALWDTAGQED 70
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L    Y  +  +++ + +   D+  N+ + W  E+  +   Q    +LVG KVD
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFC--QGVPIILVGCKVD 125

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++    E  PT+  D    +V + GK + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 145

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 10/121 (8%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  P +  ++ +  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D 130
           D
Sbjct: 118 D 118

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  D    +V + GK + L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 63
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    Y      ++ + +    +F N+   W  E+  +  +     LLVG K+D
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLD 119

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  D    +V + GK + L +WDTAGQE
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 63
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    Y      ++ + +    +F N+   W  E+  +  +     LLVG K+D
Sbjct: 64  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLD 119

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 118

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 118

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 10/121 (8%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++    E  PT+  ++ +  V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D 130
           D
Sbjct: 118 D 118

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAG E
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 65
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D
Sbjct: 66  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 121

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  D    +V + GK + L +WDTAG E
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 89
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    Y      ++ + +    +F N+   W  E+  +  N   I  LVG K+D
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 145

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 10/121 (8%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAG E
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGLE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D 130
           D
Sbjct: 118 D 118

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 10/121 (8%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++ +  V +GG+   L ++DTAG E
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGLE 66
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
            +  L    Y      ++ + V    +F N+ + W  EI        C K   LLVG ++
Sbjct: 67  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 121
Query: 130 D 130
           D
Sbjct: 122 D 122

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K +L+GD  VGK++L++S+T++ +  E  PT   +F    V++ G+ ++L + DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSVDGRPVRLQLCDTAGQDE 80
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           F  L    Y      ++ + V    +F N+++ W  EI  +      I  LVG + D
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPII--LVGTQSD 135

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGL 213
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           E +  L    Y      ++ + +    +F ++   W  E+  +  N   I  LVG K+D
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII--LVGTKLD 270

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGL 213
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           E +  L    Y      ++ + +    +F ++   W  E+  +  N   I  LVG K+D
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII--LVGTKLD 270

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V + GK + L +WDTAG 
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGL 213
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           E +  L    Y      ++ + +    +F ++   W  E+  +  N   I  LVG K+D
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII--LVGTKLD 270

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  ++   +V +  K + L +WDTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    Y      ++ + +    ++ N+   W  E+  +  +   I  LVG K+D
Sbjct: 63  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII--LVGTKLD 118

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 63/137 (45%), Gaps = 23/137 (16%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  D    +V + GK + L +WDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADI-------------------WAKEIDL 113
            +  L    Y    G     D+T R     +AD+                   W  E+  
Sbjct: 65  DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 114 YSTNQDCIKLLVGNKVD 130
           +  N   I  LVG K+D
Sbjct: 125 HCPNTPII--LVGTKLD 139

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHV-ALGGKKMKLAIWDTAGQ 71
            K++++GD  VGK+ LLL+F+         PT+  +F   HV     ++  L +WDTAGQ
Sbjct: 24  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS--HVMKYKNEEFILHLWDTAGQ 81
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           E +  L    Y  +  +++ + V  R +F N++  W  EI  Y      +  LVG KVD
Sbjct: 82  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV--LVGLKVD 138

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K++++GDS  GK+ LL  F  D F E   PT+  ++      +  ++++L++WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 67
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  +    Y  +  +++ +D++R +T  ++   W  EI  +  N     LLVG K D
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSD 122

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K++++GDS  GK+ LL  F  D F E   PT+  ++      +  ++++L++WDT+G   
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS-FEIDTQRIELSLWDTSGSPY 88
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  +    Y  +  +++ +D++R +T  ++   W  EI  +  N     LLVG K D
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSD 143

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHV-ALGGKKMKLAIWDTAGQ 71
            K++++GD  VGK+ LLL+F+         PT+  +F   HV     ++  L +WDTAGQ
Sbjct: 23  LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS--HVMKYKNEEFILHLWDTAGQ 80
Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           E +  L    Y  +  +++ + V  R +F N++  W  EI  Y      +  LVG KVD
Sbjct: 81  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV--LVGLKVD 137

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K++++GDS  GK+ LL  F  D F E   PT+  ++      +  ++++L++WDT+G   
Sbjct: 25  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 83
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  +    Y  +  +++ +D++R +T  ++   W  EI  +  N     LLVG K D
Sbjct: 84  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSD 138

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  D    +V +  K + L +WDTAGQE
Sbjct: 10  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQE 68
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    Y      ++ + +    ++ N+   W  E+  +  +   I  LVG K+D
Sbjct: 69  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII--LVGTKLD 124

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  D    +V +  K + L +WDTAGQE
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQE 69
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    Y      ++ + +    ++ N+   W  E+  +  +   I  LVG K+D
Sbjct: 70  DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII--LVGTKLD 125

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+T+L            PTIG  F ++ V    K +   +WD  GQ+R
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNICFTVWDVGGQDR 73
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            R L   Y++  QG+I V D   R+    +AD   K + L    +D + LL  NK D
Sbjct: 74  IRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKML-LVDELRDAVLLLFANKQD 129

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K+ ++G   VGKS+L + F    F +   PTI   F  K + + G++  L + DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +     +Y     G I+VY VT   +F  +  I  K +D+    Q  I +LVGNK D
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKD 122

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K+ ++G   VGKS+L + F    F +   PTI   F  K + + G++  L + DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 64
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +     +Y     G I+VY VT   +F  +  I  K +D+    Q  I +LVGNK D
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKD 120

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K+ ++G   VGKS+L + F    F +   PTI   F  K + + G++  L + DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +     +Y     G I+VY VT   +F  +  I  K +D+    Q  I +LVGNK D
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKD 122

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K+ ++G   VGKS+L + F    F +   PTI   F  K + + G++  L + DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 61
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +     +Y     G I+VY VT   +F  +  I  K +D+    Q  I +LVGNK D
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKD 117

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K++++G   VGK++L   F    F E   PT+   +  K V LG  +  L + DTAGQ+ 
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAGQDE 84
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133
           +  L  S+  G  G ++VY VT   +F  +  ++ K  + +   +  + +LVGNK D + 
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPV-VLVGNKAD-LS 142
Query: 134 PWR 136
           P R
Sbjct: 143 PER 145

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G  G GK+T+L            PTIG  F ++ V    K +   +WD  GQ+R
Sbjct: 1   MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIG--FNVETVQY--KNISFTVWDVGGQDR 56
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK----LLVGNKV 129
            R+L   YYR  +G+I V D   R          A+E+     N+D ++    L+  NK 
Sbjct: 57  IRSLWRHYYRNTEGVIFVVDSNDRSRIGE-----AREVMQRMLNEDELRNAAWLVFANKQ 111
Query: 130 D 130
           D
Sbjct: 112 D 112

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G  G GK+T+L            PTIG  F ++ V    K +   +WD  GQ+R
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIG--FNVETVQY--KNISFTVWDVGGQDR 73
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK----LLVGNKV 129
            R+L   YYR  +G+I V D   R          A+E+     N+D ++    L+  NK 
Sbjct: 74  IRSLWRHYYRNTEGVIFVVDSNDRSRIGE-----AREVMQRMLNEDELRNAAWLVFANKQ 128
Query: 130 D 130
           D
Sbjct: 129 D 129

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G  G GK+T+L            PTIG  F ++ V    K +   +WD  GQ+R
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIG--FNVETVQY--KNISFTVWDVGGQDR 73
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK----LLVGNKV 129
            R+L   YYR  +G+I V D   R          A+E+     N+D ++    L+  NK 
Sbjct: 74  IRSLWRHYYRNTEGVIFVIDSNDRSRIGE-----AREVMQRMLNEDELRNAVWLVFANKQ 128
Query: 130 D 130
           D
Sbjct: 129 D 129

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132
            +  +   Y R  +G + V+ +    +F ++ +++ ++I     + D   +LVGNK D  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCD-- 137
Query: 133 CPWRLFLSGFWHFLLSKF 150
            P R   +   H L   +
Sbjct: 138 LPTRTVDTKQAHELAKSY 155

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           ++L++G    GK+T+L            PT+G  F ++ V    K +K  +WD  GQ++ 
Sbjct: 324 RILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDKI 379
Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 380 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 434

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 25  GKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR 83
           GKS L + F + TF E+  PTI  DF  K + +      L I DTAG E+F ++   Y +
Sbjct: 15  GKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIK 73
Query: 84  GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
             QG I+VY +  + +F ++  +  + I +    +  + +LVGNKVD
Sbjct: 74  NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPV-ILVGNKVD 119

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 14/140 (10%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            +LL++G    GK+T+L  F  +  + +SPT+G + K     L  +  KL IWD  GQ+ 
Sbjct: 17  LRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIK----TLEHRGFKLNIWDVGGQKS 72
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRR----DTFTNLADIWAKE------IDLYSTNQDCIKL 123
            R+   +Y+    G+I V D   R    D    L  +  +E      + +++  QD    
Sbjct: 73  LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 132
Query: 124 LVGNKVDKVCPWRLFLSGFW 143
           L  N + +V       S  W
Sbjct: 133 LSSNAIREVLELDSIRSHHW 152

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+T+L            PT+G  F ++ V    K +K  +WD  GQ++
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 68
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 69  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 124

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+T+L            PT+G  F ++ V    K +K  +WD  GQ++
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 56
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 112

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+T+L            PT+G  F ++ V    K +K  +WD  GQ++
Sbjct: 1   MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 56
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 57  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 112

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+T+L            PT+G  F ++ V    K +K  +WD  GQ++
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 69
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 70  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 125

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 3/141 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +++ + G  GVGKS+L+L F   TF E   PT+   ++ + ++       L I DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132
           +F  +           I+VY +T R +   L  I+ +  ++    +    +LVGNK D+ 
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE- 121
Query: 133 CPWRLFLSGFWHFLLSKFYCS 153
            P R   S     L   + C+
Sbjct: 122 SPSREVQSSEAEALARTWKCA 142

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            +LL++G    GK+T+L  F  +  + +SPT+G + K     L  +  KL IWD  GQ+ 
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK----TLEHRGFKLNIWDVGGQKS 74
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTN 102
            R+   +Y+    G+I V D   R    +
Sbjct: 75  LRSYWRNYFESTDGLIWVVDSADRQRMQD 103

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 3/131 (2%)
Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
           MA+S    E    +KL+++GD GVGKS L + F    F +E  PTI   ++ KH  +  +
Sbjct: 6   MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYR-KHTEIDNQ 64
Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
              L + DTAGQE F  +   Y R   G ++VY VT + +F ++ D + + I      + 
Sbjct: 65  WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRES 123
Query: 120 CIKLLVGNKVD 130
              +LV NKVD
Sbjct: 124 FPMILVANKVD 134

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 3/131 (2%)
Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
           MA+S    E    +KL+++GD GVGKS L + F    F  E  PTI  D  +KH  +  +
Sbjct: 6   MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIE-DSYLKHTEIDNQ 64
Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
              L + DTAGQE F  +   Y R   G ++VY VT + +F ++ D + + I      + 
Sbjct: 65  WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRES 123
Query: 120 CIKLLVGNKVD 130
              +LV NKVD
Sbjct: 124 FPMILVANKVD 134

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            +LL++G    GK+T+L  F  +  + +SPT+G + K     L  +  KL IWD  GQ+ 
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK----TLEHRGFKLNIWDVGGQKS 74
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTN 102
            R+   +Y+    G+I V D   R    +
Sbjct: 75  LRSYWRNYFESTDGLIWVVDSADRQRMQD 103

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           ++L +G    GK+T+L            PT+G  F ++ V    K +K  +WD  GQ++ 
Sbjct: 2   RILXLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDKI 57
Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 58  RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREX-RDAIILIFANKQD 112

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70
           D   ++LL+G    GK+TLL    S+    ++PT G  F IK V   G   KL +WD  G
Sbjct: 15  DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQSQG--FKLNVWDIGG 70
Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTF 100
           Q + R    SY+     +I V D   R  F
Sbjct: 71  QRKIRPYWRSYFENTDILIYVIDSADRKRF 100

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70
           D   ++LL+G    GK+TLL    S+    ++PT G  F IK V   G   KL +WD  G
Sbjct: 14  DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQSQG--FKLNVWDIGG 69
Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTF 100
           Q + R    SY+     +I V D   R  F
Sbjct: 70  QRKIRPYWRSYFENTDILIYVIDSADRKRF 99

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+T+L            PTIG  F ++ V    K +   +WD  GQ++
Sbjct: 21  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 76
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            R L   Y++  QG+I V D   RD      D   + ++     +D + L+  NK D
Sbjct: 77  IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN-EDELRDAVLLVFANKQD 132

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 5   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     ++D   +LVGNK D
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKSD 120

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 5   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     ++D   +LVGNK D
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKSD 120

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 3/131 (2%)
Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
           MA+S    E    +KL+++GD GVGKS L + F    F ++  PTI  D  +KH  +  +
Sbjct: 6   MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQ 64
Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
              L + DTAGQE F  +   Y R   G ++VY VT + +F ++ D + + I      + 
Sbjct: 65  WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRES 123
Query: 120 CIKLLVGNKVD 130
              +LV NKVD
Sbjct: 124 FPMILVANKVD 134

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 9   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 124

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 124

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F E+  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSD 119

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 11  YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 69
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 70  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 126

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 3/131 (2%)
Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
           MA+S    E    +KL+++GD GVGKS L + F    F  +  PTI  D  +KH  +  +
Sbjct: 1   MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQ 59
Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
              L + DTAGQE F  +   Y R   G ++VY VT + +F ++ D + + I      + 
Sbjct: 60  WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRES 118
Query: 120 CIKLLVGNKVD 130
              +LV NKVD
Sbjct: 119 FPMILVANKVD 129

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGEICLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL + G +GVGKS L++ F +  F  E  PT+   ++     +  + + + I DTAGQE 
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQED 88
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
                  + R  +G ++VYD+T R +F  +  +    +D     ++   +LVGNK D
Sbjct: 89  -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPL-KNILDEIKKPKNVTLILVGNKAD 143

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
          + +LL++G    GK+T+L  F  +  + +SPT+G + K     L  +  KL IWD  G +
Sbjct: 1  MLRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK----TLEHRGFKLNIWDVGGLK 56
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRR 97
            R+   +Y+    G+I V D   R
Sbjct: 57 SLRSYWRNYFESTDGLIWVVDSADR 81

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+T+L            PTIG  F ++ V    K +   +WD  GQ++
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNICFTVWDVGGQDK 85
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            R L   Y++  QG+I V D   R+     AD   K +      +D + L+  NK D
Sbjct: 86  IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQ-EDELRDAVLLVFANKQD 141

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGN+ D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNRCD 119

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGK+ L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 80
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     ++D   +LVGNK D
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCD 137

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  P+I   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+L+GD   GK+ +L     D + E   PT+  ++    +    ++++L++WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 71
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  +    Y  +  +++ +D++R +T  +    W  EI  Y  +     LL+G K D
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR--VLLIGCKTD 126

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           ++LL+G    GK+TLL    S+    ++PT G  F IK V   G   KL +WD  GQ + 
Sbjct: 6   RILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKI 61
Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTF 100
           R    SY+     +I V D   R  F
Sbjct: 62  RPYWRSYFENTDILIYVIDSADRKRF 87

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  P+I   ++ K V + G+   L I DTAGQE
Sbjct: 10  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 68
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 69  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 125

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+T+L            PT+G  F ++ V    K +K  +WD  G ++
Sbjct: 4   MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGLDK 59
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 60  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 115

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+T+L            PT+G  F ++ V    K +K  +WD  G ++
Sbjct: 14  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGLDK 69
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 70  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 125

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+L+GD   GK+ +L     D + E   PT+  ++    +    ++++L++WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 70
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  +    Y  +  +++ +D++R +T  +    W  EI  Y  +     LL+G K D
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR--VLLIGCKTD 125

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+T+L            PT+G  F ++ V    K +K  +WD  G ++
Sbjct: 3   MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGLDK 58
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            R L   YY G QG+I V D   RD          + I+     +D I L+  NK D
Sbjct: 59  IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 114

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+L+GD   GK+ +L     D + E   PT+  ++    +    ++++L++WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 87
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  +    Y  +  +++ +D++R +T  +    W  EI  Y  +     LL+G K D
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR--VLLIGCKTD 142

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 21/151 (13%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+++L            PTIG  F ++ V    K +   +WD  GQ++
Sbjct: 18  MRILMVGLDAAGKTSILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD----CIKLLVGNKV 129
            R L   YY+  Q II V D   RD         A+E  +   N+D     I L+  NK 
Sbjct: 74  IRPLWRHYYQNTQAIIFVVDSNDRDRIGE-----AREELMKMLNEDEMRNAILLVFANKH 128
Query: 130 DKVCPWRLFLS------GFWHFLLSKFYCSS 154
           D   P  + +S      G       K+YC +
Sbjct: 129 D--LPQAMSISEVTEKLGLQTIKNRKWYCQT 157

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 26  KSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG 84
           KS L + F    F  +  PTI  D   K  ++ G   +L I DTAGQE F  +   Y R 
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 85  AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
             G ++V+ +  R +F  +  ++ + + +   + D   +LVGNK D
Sbjct: 81  GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD-DFPVVLVGNKAD 125

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DT GQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAG+E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGKE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           K++++G    GK+T+L  F+ +     SPTIG +  ++ + +   +    +WD  GQE  
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN--VEEIVINNTR--FLMWDIGGQESL 73
Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFT 101
           R+  ++YY   + +I+V D T R+  +
Sbjct: 74  RSSWNTYYTNTEFVIVVVDSTDRERIS 100

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DT GQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           K++++G    GK+T+L  F+ +     SPTIG +  ++ + +   +    +WD  GQE  
Sbjct: 18  KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN--VEEIVINNTR--FLMWDIGGQESL 73
Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFT 101
           R+  ++YY   + +I+V D T R+  +
Sbjct: 74  RSSWNTYYTNTEFVIVVVDSTDRERIS 100

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
               +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F ++  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            +L L+G    GK+T +    S  F E++ PT+G  F ++ V  G   +K  IWD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQP 78
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           RFR++   Y RG   I+ + D   R+      +     +D     Q    L++GNK D
Sbjct: 79  RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL-QGIPVLVLGNKRD 135

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 14/141 (9%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           K++++G    GK+T+L  F  +     SPTIG +  ++ + +  K     +WD  GQE  
Sbjct: 18  KVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSN--VEEIVV--KNTHFLMWDIGGQESL 73
Query: 75  RTLTSSYYRGAQGIIMVYD--------VTRRDTFTNLA--DIWAKEIDLYSTNQDCIKLL 124
           R+  ++YY   + II+V D        +T+ + +  LA  D+    + +++  QD    +
Sbjct: 74  RSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCM 133
Query: 125 VGNKVDKVCPWRLFLSGFWHF 145
              ++ K           WH 
Sbjct: 134 TAAEISKYLTLSSIKDHPWHI 154

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKXD 119

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKXD 119

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 6   SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAI 65
           S QE     K++++G    GK+T+L  F+ +     SPTIG +  ++ + +   +    +
Sbjct: 19  SHQEH----KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN--VEEIVINNTR--FLM 70
Query: 66  WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFT 101
           WD  GQE  R+  ++YY   + +I+V D T R+  +
Sbjct: 71  WDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERIS 106

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           K++++G    GK+T+L  F+ +     SPTIG +  ++ + +     +  +WD  GQE  
Sbjct: 23  KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN--VEEIVI--NNTRFLMWDIGGQESL 78
Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFT 101
           R+  ++YY   + +I+V D T R+  +
Sbjct: 79  RSSWNTYYTNTEFVIVVVDSTDRERIS 105

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 11/121 (9%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G  G GK+T+L            PTIG + +     L  K +KL +WD  GQ  
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE----TLSYKNLKLNVWDLGGQTS 74
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTN---QDCIKLLVGNKVD 130
            R     YY     +I V D T +D  +      +KE+ L       QD   L+  NK D
Sbjct: 75  IRPYWRCYYADTAAVIFVVDSTDKDRMSTA----SKELHLMLQEEELQDAALLVFANKQD 130
Query: 131 K 131
           +
Sbjct: 131 Q 131

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 26  KSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG 84
           KS L + F    F  +  PTI  D   K   +  +  +L I DTAGQE F  +   Y R 
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 85  AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +G ++V+ VT R +F  +   + ++I       +   +L+GNK D
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYK-FQRQILRVKDRDEFPMILIGNKAD 121

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGVE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGGE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETXLLDILDTAGGE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 67
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 124

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 10/126 (7%)
Query: 10  FDYLF-----KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLA 64
           F+ LF     ++L++G    GK+T+L            PTIG  F ++ V    + +   
Sbjct: 9   FNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIG--FNVETVEF--RNISFT 64
Query: 65  IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL 124
           +WD  GQ++ R L   YY    G+I V D   R+   +  +   + I+     +D I L+
Sbjct: 65  VWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEEL-KDAIILV 123
Query: 125 VGNKVD 130
             NK D
Sbjct: 124 FANKQD 129

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGIE 62
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+T+L            PTIG  F ++ V    K +   +WD  GQ++
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 221
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRD 98
            R L   Y++  QG+I V D   R+
Sbjct: 222 IRPLWRHYFQNTQGLIFVVDSNDRE 246

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G  G GK+T+L            PTIG + +          +   +WD  GQ+R
Sbjct: 18  MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYC----NISFTVWDVGGQDR 73
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
            R+L   YY   +G+I V D   R          A+E+     N+D
Sbjct: 74  IRSLWRHYYCNTEGVIFVVDSNDRSRIGE-----AREVMQRMLNED 114

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 7/122 (5%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           L++++L+GD GVGK++L   F      +L   +G D   + + + G+   L + DT   E
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAE 63
Query: 73  RFRT--LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ-DCIK-LLVGNK 128
           +        S  +G    ++VY +  R +F + +++    I L  T+Q D +  +LVGNK
Sbjct: 64  KLDKSWSQESCLQGGSAYVIVYSIADRGSFESASEL---RIQLRRTHQADHVPIILVGNK 120
Query: 129 VD 130
            D
Sbjct: 121 AD 122

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           ++L++G    GK+T+L            PTIG  F ++ V    K +   +WD  GQ++
Sbjct: 1  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 56
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
           R L   Y++  QG+I V D   R+
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRE 81

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           ++L++G    GK+T+L            PTIG  F ++ V    K +   +WD  GQ++
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 72
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
           R L   Y++  QG+I V D   R+
Sbjct: 73 IRPLWRHYFQNTQGLIFVVDSNDRE 97

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           ++L++G    GK+T+L            PTIG  F ++ V    K +   +WD  GQ++
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
           R L   Y++  QG+I V D   R+
Sbjct: 74 IRPLWRHYFQNTQGLIFVVDSNDRE 98

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            +L L+G    GK+T +    S  F E++ PT+G  F ++ +  G   +KL  WD  GQ 
Sbjct: 32  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQP 87
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           RFR++   Y RG   I+ + D   ++      +     +D     Q    L++GNK D
Sbjct: 88  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL-QGIPVLVLGNKRD 144

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 24 VGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR 83
           GK+T+L  F  +  + +SPT+G + K     L  +  KL IWD  GQ+  R+   +Y+ 
Sbjct: 29 AGKTTILKKFNGEDVDTISPTLGFNIK----TLEHRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 84 GAQGIIMVYDVTRR 97
             G+I V D   R
Sbjct: 85 STDGLIWVVDSADR 98

>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           ++LL+G    GK+TLL    S+    ++PT G  F IK V   G   KL +WD  G  + 
Sbjct: 6   RILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQSQG--FKLNVWDIGGLRKI 61
Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTF 100
           R    SY+     +I V D   R  F
Sbjct: 62  RPYWRSYFENTDILIYVIDSADRKRF 87

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            +L L+G    GK+T +    S  F E++ PT+G  F ++ +  G   +KL  WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQP 78
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           RFR++   Y RG   I+ + D   ++      +     +D     Q    L++GNK D
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL-QGIPVLVLGNKRD 135

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           ++L++G    GK+T+L            PTIG  F ++ V    K +   +WD  G ++
Sbjct: 3  MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGLDK 58
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
           R L   Y++  QG+I V D   R+
Sbjct: 59 IRPLWRHYFQNTQGLIFVVDSNDRE 83

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL---SPTIGVDFKIKHVALGGKKMK---LAIWDT 68
           KL ++G++G GK+TLL         +L   S T+G+D K   + +  K+ +   L +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AG+E F +    +       + VYD+++     +    W   I   +++   I  LVG  
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI--LVGTH 119
Query: 129 VD 130
           +D
Sbjct: 120 LD 121

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEEL---SPTIGVDFKIKHVALGGKKMK---LAIWDT 68
           KL ++G++G GK+TLL         +L   S T+G+D K   + +  K+ +   L +WD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AG+E F +    +       + VYD+++     +    W   I   +++   I  LVG  
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI--LVGTH 121
Query: 129 VD 130
           +D
Sbjct: 122 LD 123

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           ++L++G  G GK+T+L            PTIG  F ++ V    K +K  +WD  GQ  
Sbjct: 3  MRILILGLDGAGKTTILYRLQVGEVVTTIPTIG--FNVETVTY--KNLKFQVWDLGGQTS 58
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
           R     YY     +I V D   RD
Sbjct: 59 IRPYWRCYYSNTDAVIYVVDSCDRD 83

>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 18/147 (12%)
Query: 16  LLLIGDSGVGKSTLL--LSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           +L +G    GK+T++  L  ++   + + PTIG  F I+        +   ++D +GQ R
Sbjct: 24  VLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIE--KFKSSSLSFTVFDMSGQGR 79
Query: 74  FRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLADIWAKEIDL--YSTNQDCI 121
           +R L   YY+  Q II V D + R          DT  N  DI  + I +  ++   D  
Sbjct: 80  YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139
Query: 122 KLLVGNKVDKVCPWRLFLSGFWHFLLS 148
             +   KV ++          WH   S
Sbjct: 140 DAVTSVKVSQLLCLENIKDKPWHICAS 166

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 15  KLLLIGDSGVGKSTLLLSFTSDT---FEELSPTIGVDFKIKHVALGGK--KMKLAIWDTA 69
           K+ ++G++ VGKS L+  FTS      ++ + T GV+  +  V +      ++L + DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTF 100
           G + ++   S Y+ G    I+V+DV+  ++F
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESF 112

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Query: 7   QQEFDYLFKLLLIGDSGVGKSTLLLSF---TSDTFEELSPTIGVDFKIKHVALGGKKMKL 63
           Q + D +FK++L+G+SGVGKSTL  +F     D+  E  P    D   + + +  +++ L
Sbjct: 17  QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHE--PENPEDTYERRIMVDKEEVTL 74
Query: 64  AIWDTAGQERFRT-LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
            ++D   Q      L     +     ++V+ VT R +F+ + +   + +     + D   
Sbjct: 75  VVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR-LRAGRPHHDLPV 133
Query: 123 LLVGNKVD 130
           +LVGNK D
Sbjct: 134 ILVGNKSD 141

>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           ++L++G  G GK+T+L            PTIG  F ++ V    K +K  +WD  G   
Sbjct: 5  MRILILGLDGAGKTTILYRLQVGEVVTTIPTIG--FNVETVTY--KNLKFQVWDLGGLTS 60
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
           R     YY     +I V D   RD
Sbjct: 61 IRPYWRCYYSNTDAVIYVVDSCDRD 85

>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
          ++L++G  G GK+T+L            PTIG  F ++ V    K +K  +WD  G    
Sbjct: 9  RILILGLDGAGKTTILYRLQVGEVVTTIPTIG--FNVETVTY--KNLKFQVWDLGGLTSI 64
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRD 98
          R     YY     +I V D   RD
Sbjct: 65 RPYWRCYYSNTDAVIYVVDSCDRD 88

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 26  KSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG 84
           KS+L+L F   TF +   PTI   ++ + ++       L I DT G  +F  +       
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 85  AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
               I+V+ VT + +   L  I+   + +  + +D   +LVGNK D+
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDE 126

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 12/126 (9%)
Query: 14  FKLLLIGDSGVGKSTL--LLSFTSDTFEELSPTIGVDFKIKHVALGGKKMK---LAIWDT 68
           ++++LIG+ GVGKSTL  + +   D+ +     +G D   + + + G+      L +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVG 126
            G+  +  L     +     ++VY +T R +F   +++    I L    Q  D   +LVG
Sbjct: 67  KGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASEL---RIQLRRARQTEDIPIILVG 121
Query: 127 NKVDKV 132
           NK D V
Sbjct: 122 NKSDLV 127

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 12/137 (8%)
Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTL--LLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
           S  S +  +  ++++LIG+ GVGKSTL  + +   D+ +     +G D   + + + G+ 
Sbjct: 27  SVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGES 86
Query: 61  MK---LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTN 117
                L +W+  G+  +  L     +     ++VY +T R +F   +++    I L    
Sbjct: 87  ATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL---RIQLRRAR 141
Query: 118 Q--DCIKLLVGNKVDKV 132
           Q  D   +LVGNK D V
Sbjct: 142 QTEDIPIILVGNKSDLV 158

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 14  FKLLLIGDSGVGKSTL--LLSFTSDTFEELSPTIGVDFKIKHVALGGKK---MKLAIWDT 68
           ++++LIG+ GVGKSTL  + +   D+ +     +G D   + + + G+    + L +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVG 126
            G+  +  L     +     ++VY +T R +F   +++    I L    Q  D   +LVG
Sbjct: 67  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL---RIQLRRARQTEDIPIILVG 121
Query: 127 NKVDKV 132
           NK D V
Sbjct: 122 NKSDLV 127

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           ++K+LL+G  GVGKS L   F        +   G  +  + + + G++  L ++D   Q+
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD 60
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
             R L           ++VY VT + +F   +++    + L    Q  D   +LVGNK D
Sbjct: 61  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL---RVQLRRARQTDDVPIILVGNKSD 117
Query: 131 KV 132
            V
Sbjct: 118 LV 119

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 12/126 (9%)
Query: 14  FKLLLIGDSGVGKSTL--LLSFTSDTFEELSPTIGVDFKIKHVALGGKKMK---LAIWDT 68
           ++++LIG+ GVGKSTL  + +   D+ +     +G D   + + + G+      L +W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVG 126
            G+  +  L     +     ++VY +T R +F   +++    I L    Q  D   +LVG
Sbjct: 67  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL---RIQLRRARQTEDIPIILVG 121
Query: 127 NKVDKV 132
           NK D V
Sbjct: 122 NKSDLV 127

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           ++K+LL+G  GVGKS L   F        +   G  +  + + + G++  L ++D   Q+
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD 65
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
             R L           ++VY VT + +F   +++    + L    Q  D   +LVGNK D
Sbjct: 66  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL---RVQLRRARQTDDVPIILVGNKSD 122
Query: 131 KV 132
            V
Sbjct: 123 LV 124

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           ++K+LL+G  GVGKS L   F        +   G  +  + + + G++  L ++D   Q+
Sbjct: 7   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD 65
Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
             R L           ++VY VT + +F   +++    + L    Q  D   +LVGNK D
Sbjct: 66  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL---RVQLRRARQTDDVPIILVGNKSD 122
Query: 131 KV 132
            V
Sbjct: 123 LV 124

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	154
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	3e-76
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	3e-74
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	5e-74
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	6e-74
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	8e-74
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	2e-73
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	3e-73
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	3e-73
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	5e-73
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-72
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-72
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-72
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-72
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	2e-72
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	3e-72
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	3e-72
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	7e-72
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	8e-72
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-71
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	2e-71
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	2e-71
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	2e-71
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-70
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	2e-70
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	3e-70
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	4e-70
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	6e-70
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	7e-69
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-68
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-68
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	3e-68
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	4e-68
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	5e-68
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-67
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	3e-66
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	4e-66
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	5e-66
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-65
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	3e-65
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	3e-64
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	7e-64
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	2e-63
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	1e-57
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	8e-56
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	4e-54
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	5e-54
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	5e-54
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	8e-54
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	2e-53
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	3e-53
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	6e-53
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	4e-52
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	2e-50
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	2e-50
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-50
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	3e-49
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	4e-49
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	6e-49
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	9e-49
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	3e-48
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	7e-48
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	1e-47
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	3e-47
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	6e-46
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	3e-44
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	1e-43
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	4e-43
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	1e-42
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	1e-40
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	2e-39
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-38
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	3e-36
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	4e-36
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	1e-34
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	3e-34
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	1e-33
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	4e-33
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	7e-33
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	8e-33
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	8e-33
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	2e-32
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	3e-32
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	7e-32
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	8e-21
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	7e-20
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	2e-16
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	2e-16
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	3e-16
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	4e-16
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	4e-16
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	5e-16
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	7e-16
3llu_A	196	RAS-related GTP-binding protein C; structural geno	2e-15
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	2e-15
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	3e-15
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	4e-15
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	8e-15
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	1e-14
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	3e-14
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	4e-14
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	5e-13
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-12
2fh5_B	214	SR-beta, signal recognition particle receptor beta	2e-12
2ged_A	193	SR-beta, signal recognition particle receptor beta	9e-11
1nrj_B	218	SR-beta, signal recognition particle receptor beta	2e-10
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	2e-10
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	2e-10
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	5e-05
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	5e-05
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	8e-04

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  224 bits (573), Expect = 3e-76
 Identities = 81/131 (61%), Positives = 100/131 (76%), Gaps = 2/131 (1%)

Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK 60
            SS   ++     K+L+IG+SGVGKS+LLL FT DTF  EL+ TIGVDFK+K +++ G K
Sbjct: 4   GSSGMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNK 63

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
            KLAIWDTAGQERFRTLT SYYRGAQG+I+VYDVTRRDTF  L + W  E++ Y T  D 
Sbjct: 64  AKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDN-WLNELETYCTRNDI 122

Query: 121 IKLLVGNKVDK 131
           + +LVGNK+DK
Sbjct: 123 VNMLVGNKIDK 133

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  218 bits (558), Expect = 3e-74
 Identities = 62/131 (47%), Positives = 88/131 (67%), Gaps = 3/131 (2%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
           + S+T+   + Y+FK ++IGD GVGKS LL  FT   F  +   TIGV+F  + + + G+
Sbjct: 3   LGSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ 62

Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
           K+KL IWDTAGQERFR +T SYYRGA G +MVYD+TRR T+ +L+  W  +    + N +
Sbjct: 63  KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS-WLTDARNLT-NPN 120

Query: 120 CIKLLVGNKVD 130
            + +L+GNK D
Sbjct: 121 TVIILIGNKAD 131

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  218 bits (558), Expect = 5e-74
 Identities = 63/130 (48%), Positives = 88/130 (67%), Gaps = 3/130 (2%)

Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKK 60
           A  T   E+DYLFK++LIGDSGVGKS LL  FT + F   S  TIGV+F  + + + GK 
Sbjct: 18  AMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 77

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +K  IWDTAG ER+R +TS+YYRGA G ++VYD+ +  T+ N+   W KE+  ++ + + 
Sbjct: 78  IKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVER-WLKELRDHA-DSNI 135

Query: 121 IKLLVGNKVD 130
           + +LVGNK D
Sbjct: 136 VIMLVGNKSD 145

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  219 bits (560), Expect = 6e-74
 Identities = 59/131 (45%), Positives = 86/131 (65%), Gaps = 3/131 (2%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGK 59
           M+S     ++D LFK++LIGDSGVGKS LL  FT + F   S  TIGV+F  + + + GK
Sbjct: 1   MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGK 60

Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
           ++K  IWDTAGQER+R +TS+YYRGA G ++VYD+++  ++ N    W  E+   + + +
Sbjct: 61  RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNH-WLSELRENA-DDN 118

Query: 120 CIKLLVGNKVD 130
               L+GNK D
Sbjct: 119 VAVGLIGNKSD 129

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  218 bits (557), Expect = 8e-74
 Identities = 68/131 (51%), Positives = 95/131 (72%), Gaps = 3/131 (2%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
           +    S +  D+  ++++IG  GVGK++L+  FT DTF E    T+GVDFKIK V L GK
Sbjct: 14  LVPRGSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGK 73

Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
           K++L IWDTAGQERF ++TS+YYR A+GII+VYD+T+++TF +L   W K ID Y+ ++D
Sbjct: 74  KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYA-SED 131

Query: 120 CIKLLVGNKVD 130
              LLVGNK+D
Sbjct: 132 AELLLVGNKLD 142

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  217 bits (554), Expect = 2e-73
 Identities = 50/130 (38%), Positives = 77/130 (59%), Gaps = 3/130 (2%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKM 61
           S   +     +FK+++IGDS VGK+ L   F +  F +    TIGVDF+ + V + G+++
Sbjct: 10  SLVPRGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERI 69

Query: 62  KLAIWDTAGQERFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           K+ +WDTAGQERFR ++   YYR    ++ VYD+T   +F +L   W +E   +    D 
Sbjct: 70  KIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPA-WIEECKQHLLANDI 128

Query: 121 IKLLVGNKVD 130
            ++LVGNK D
Sbjct: 129 PRILVGNKCD 138

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  217 bits (555), Expect = 3e-73
 Identities = 74/132 (56%), Positives = 94/132 (71%), Gaps = 3/132 (2%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
            ASS + + +D + K+LLIGDSGVGKS LL+ F  D F      TIG+DFKIK V + GK
Sbjct: 8   SASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGK 67

Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
           K+KL +WDTAGQERFRT+T++YYRGA GII+VYDVT   TFTN+   W K ++ ++ N +
Sbjct: 68  KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDE 125

Query: 120 CIKLLVGNKVDK 131
              LLVGNK D 
Sbjct: 126 AQLLLVGNKSDM 137

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  216 bits (553), Expect = 3e-73
 Identities = 63/131 (48%), Positives = 91/131 (69%), Gaps = 3/131 (2%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
           +    S +++D+LFK++LIG++GVGK+ L+  FT   F      TIGVDF IK V + G+
Sbjct: 14  LVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGE 73

Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
           K+KL IWDTAGQERFR++T SYYR A  +I+ YD+T  ++F  L + W +EI+ Y+ +  
Sbjct: 74  KVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPE-WLREIEQYA-SNK 131

Query: 120 CIKLLVGNKVD 130
            I +LVGNK+D
Sbjct: 132 VITVLVGNKID 142

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  216 bits (552), Expect = 5e-73
 Identities = 63/129 (48%), Positives = 88/129 (68%), Gaps = 3/129 (2%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKM 61
           +   Q  FDY+FKLL+IG+S VGK++ L  +  DTF      T+G+DFK+K V    K++
Sbjct: 13  NLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRV 72

Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           KL IWDTAGQER+RT+T++YYRGA G I++YD+T  ++F  + D WA +I  YS   +  
Sbjct: 73  KLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WATQIKTYS-WDNAQ 130

Query: 122 KLLVGNKVD 130
            +LVGNK D
Sbjct: 131 VILVGNKCD 139

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  215 bits (549), Expect = 1e-72
 Identities = 60/131 (45%), Positives = 88/131 (67%), Gaps = 3/131 (2%)

Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK 60
           +S    +  DY+FKLLLIG+S VGK++ L  +  D+F      T+G+DFK+K V    K+
Sbjct: 11  SSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKR 70

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +KL IWDTAGQER+RT+T++YYRGA G +++YD+  +++F  + D WA +I  YS   + 
Sbjct: 71  IKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQD-WATQIKTYS-WDNA 128

Query: 121 IKLLVGNKVDK 131
             +LVGNK D 
Sbjct: 129 QVILVGNKCDL 139

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  215 bits (550), Expect = 1e-72
 Identities = 58/125 (46%), Positives = 85/125 (68%), Gaps = 3/125 (2%)

Query: 7   QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAI 65
              FDY+FK+L+IG+S VGK++ L  +  D+F      T+G+DFK+K +    K++KL I
Sbjct: 2   SHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 61

Query: 66  WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLV 125
           WDTAG ER+RT+T++YYRGA G I++YD+T  ++F  + D W+ +I  YS   +   LLV
Sbjct: 62  WDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYS-WDNAQVLLV 119

Query: 126 GNKVD 130
           GNK D
Sbjct: 120 GNKCD 124

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  215 bits (549), Expect = 1e-72
 Identities = 82/128 (64%), Positives = 99/128 (77%), Gaps = 3/128 (2%)

Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMK 62
           S+   E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +K
Sbjct: 7   SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 66

Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
           L IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y+ +++  K
Sbjct: 67  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SENVNK 124

Query: 123 LLVGNKVD 130
           LLVGNK D
Sbjct: 125 LLVGNKCD 132

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  215 bits (549), Expect = 1e-72
 Identities = 59/130 (45%), Positives = 90/130 (69%), Gaps = 3/130 (2%)

Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK 60
            S    +++D+LFKL+L+GD+ VGK+ ++  F +  F E    TIGVDF +K + + GK+
Sbjct: 18  GSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKR 77

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +KL IWDTAGQERFRT+T SYYR A G I+ YD+T+R +F ++   W +++  Y+   + 
Sbjct: 78  VKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPH-WIEDVRKYA-GSNI 135

Query: 121 IKLLVGNKVD 130
           ++LL+GNK D
Sbjct: 136 VQLLIGNKSD 145

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  215 bits (549), Expect = 2e-72
 Identities = 82/129 (63%), Positives = 99/129 (76%), Gaps = 3/129 (2%)

Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMK 62
           S+   E+DYLFKLLLIGDSGVGKS LLL F  DT+ E    TIGVDFKI+ + L GK +K
Sbjct: 24  SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 83

Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
           L IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+   W +EID Y+ +++  K
Sbjct: 84  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SENVNK 141

Query: 123 LLVGNKVDK 131
           LLVGNK D 
Sbjct: 142 LLVGNKCDL 150

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  213 bits (546), Expect = 3e-72
 Identities = 56/128 (43%), Positives = 84/128 (65%), Gaps = 4/128 (3%)

Query: 5   TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS--PTIGVDFKIKHVALGGKKMK 62
           +    +D  FK++L+GDSGVGK+ LL+ F    F   +   T+G+DF+ K + + G K+K
Sbjct: 2   SGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVK 61

Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
           L +WDTAGQERFR++T +YYR A  ++++YDVT + +F N+   W  EI  Y+   D   
Sbjct: 62  LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQA-WLTEIHEYA-QHDVAL 119

Query: 123 LLVGNKVD 130
           +L+GNKVD
Sbjct: 120 MLLGNKVD 127

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  213 bits (545), Expect = 3e-72
 Identities = 70/128 (54%), Positives = 93/128 (72%), Gaps = 4/128 (3%)

Query: 5   TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKL 63
           +  +++D+LFKLL+IGDSGVGKS+LLL F  +TF      TIGVDFKI+ V + G+K+KL
Sbjct: 1   SMARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKL 60

Query: 64  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL 123
            IWDTAGQERFRT+TS+YYRG  G+I+VYDVT  ++F N+   W  EI+    +    ++
Sbjct: 61  QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR-WLHEINQNCDD--VCRI 117

Query: 124 LVGNKVDK 131
           LVGNK D 
Sbjct: 118 LVGNKNDD 125

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  213 bits (545), Expect = 7e-72
 Identities = 79/124 (63%), Positives = 95/124 (76%), Gaps = 3/124 (2%)

Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIW 66
            E+DYLFKLLLIG+SGVGKS LLL F+ DT+  +   TIGVDFKIK V L GK +KL IW
Sbjct: 3   SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW 62

Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
           DTAGQERFRT+TSSYYRG+ GII+VYDVT +++F  +   W +EID Y+     +KLLVG
Sbjct: 63  DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKM-WLQEIDRYA-TSTVLKLLVG 120

Query: 127 NKVD 130
           NK D
Sbjct: 121 NKCD 124

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  213 bits (544), Expect = 8e-72
 Identities = 55/128 (42%), Positives = 84/128 (65%), Gaps = 3/128 (2%)

Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMK 62
               ++++++FK++LIG+SGVGK+ LL  FT + F   S  TIGV+F  + V LG   +K
Sbjct: 16  PRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVK 75

Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
             IWDTAG ER+R +TS+YYRGA G ++V+D+T+  T+  +   W KE+  ++     + 
Sbjct: 76  AQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVER-WLKELYDHA-EATIVV 133

Query: 123 LLVGNKVD 130
           +LVGNK D
Sbjct: 134 MLVGNKSD 141

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  212 bits (543), Expect = 1e-71
 Identities = 64/129 (49%), Positives = 89/129 (68%), Gaps = 3/129 (2%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKM 61
           SS       YLFK ++IGD+GVGKS LLL FT   F+ +   TIGV+F  + V + GK++
Sbjct: 11  SSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQI 70

Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           KL IWDTAGQE FR++T SYYRGA G ++VYD+TRR+TF +L   W ++   +S + + +
Sbjct: 71  KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTS-WLEDARQHS-SSNMV 128

Query: 122 KLLVGNKVD 130
            +L+GNK D
Sbjct: 129 IMLIGNKSD 137

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  212 bits (542), Expect = 2e-71
 Identities = 60/128 (46%), Positives = 84/128 (65%), Gaps = 3/128 (2%)

Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMK 62
                  D+LFK L+IG +G GKS LL  F  + F++ S  TIGV+F  + V +GGK +K
Sbjct: 16  PRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVK 75

Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
           L IWDTAGQERFR++T SYYRGA G ++VYD+T R+T+ +LA  W  +    + + + + 
Sbjct: 76  LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAA-WLTDARTLA-SPNIVV 133

Query: 123 LLVGNKVD 130
           +L GNK D
Sbjct: 134 ILCGNKKD 141

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  212 bits (541), Expect = 2e-71
 Identities = 60/124 (48%), Positives = 87/124 (70%), Gaps = 3/124 (2%)

Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIW 66
           + +D+LFK L+IG++G GKS LL  F    F++ S  TIGV+F  K + +GGK +KL IW
Sbjct: 5   ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64

Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
           DTAGQERFR++T SYYRGA G ++VYD+T R+T+  L + W  +  + + +Q+ + +L G
Sbjct: 65  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLA-SQNIVIILCG 122

Query: 127 NKVD 130
           NK D
Sbjct: 123 NKKD 126

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  211 bits (540), Expect = 2e-71
 Identities = 66/124 (53%), Positives = 93/124 (75%), Gaps = 3/124 (2%)

Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIW 66
           + +DYLFKLLLIGDSGVGK+ +L  F+ D F      TIG+DFKI+ + L GK++KL IW
Sbjct: 3   KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 62

Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
           DTAGQERFRT+T++YYRGA GI++VYD+T   +F N+ + W + I+ ++ + D  K+++G
Sbjct: 63  DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHA-SADVEKMILG 120

Query: 127 NKVD 130
           NK D
Sbjct: 121 NKCD 124

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  210 bits (537), Expect = 1e-70
 Identities = 49/138 (35%), Positives = 85/138 (61%), Gaps = 12/138 (8%)

Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVAL------ 56
           S S  ++DYL K L +GDSGVGK+++L  +T   F      T+G+DF+ K V        
Sbjct: 2   SMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPD 61

Query: 57  ----GGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEID 112
                G+++ L +WDTAG ERFR+LT++++R A G ++++D+T   +F N+ + W  ++ 
Sbjct: 62  GAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQ 120

Query: 113 LYSTNQDCIKLLVGNKVD 130
           +++ +++   +L GNK D
Sbjct: 121 MHAYSENPDIVLCGNKSD 138

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  210 bits (536), Expect = 2e-70
 Identities = 61/122 (50%), Positives = 86/122 (70%), Gaps = 3/122 (2%)

Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDT 68
           +DYLFK++LIGDSGVGKS LL  FT + F   S  TIGV+F  + + + GK +K  IWDT
Sbjct: 2   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61

Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQER+R +TS+YYRGA G ++VYD+ +  T+ N+   W KE+  ++ + + + +LVGNK
Sbjct: 62  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVER-WLKELRDHA-DSNIVIMLVGNK 119

Query: 129 VD 130
            D
Sbjct: 120 SD 121

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  208 bits (531), Expect = 3e-70
 Identities = 71/122 (58%), Positives = 88/122 (72%), Gaps = 3/122 (2%)

Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
           D + K+LLIGDSGVGKS LL+ F  D F      TIG+DFKIK V + GKK+KL IWDTA
Sbjct: 1   DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60

Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQERFRT+T++YYRGA GII+VYD+T   TFTN+   W K ++ ++ N +   LLVGNK 
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKS 118

Query: 130 DK 131
           D 
Sbjct: 119 DM 120

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  209 bits (535), Expect = 4e-70
 Identities = 50/140 (35%), Positives = 84/140 (60%), Gaps = 12/140 (8%)

Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK- 59
                  ++DYL KLL +GDSGVGK+T L  +T + F  +   T+G+DF+ K V    + 
Sbjct: 14  LVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQG 73

Query: 60  ---------KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKE 110
                    K+ L +WDTAGQERFR+LT++++R A G ++++D+T + +F N+ + W  +
Sbjct: 74  PNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQ 132

Query: 111 IDLYSTNQDCIKLLVGNKVD 130
           +   +  ++   +L+GNK D
Sbjct: 133 LQANAYCENPDIVLIGNKAD 152

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  208 bits (532), Expect = 6e-70
 Identities = 50/131 (38%), Positives = 81/131 (61%), Gaps = 3/131 (2%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
              S         +K++L GD+ VGKS+ L+    + F E +S T+GVDF++K + + G+
Sbjct: 16  PRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGE 75

Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
           +  L +WDTAGQERFR++  SY+R A G++++YDVT   +F N+ + W   I+  + ++ 
Sbjct: 76  RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE-WVDMIEDAA-HET 133

Query: 120 CIKLLVGNKVD 130
              +LVGNK D
Sbjct: 134 VPIMLVGNKAD 144

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  204 bits (522), Expect = 7e-69
 Identities = 50/122 (40%), Positives = 75/122 (61%), Gaps = 3/122 (2%)

Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDT 68
             Y FK++L+G+  VGK++L+L +  + F +    T+G  F  K + +GGK++ LAIWDT
Sbjct: 3   RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDT 62

Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQERF  L   YYR + G I+VYD+T  D+F  + + W KE+       +    +VGNK
Sbjct: 63  AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKML-GNEICLCIVGNK 120

Query: 129 VD 130
           +D
Sbjct: 121 ID 122

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  206 bits (525), Expect = 1e-68
 Identities = 49/131 (37%), Positives = 72/131 (54%), Gaps = 5/131 (3%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGK 59
           MAS+ +Q E    FKL+L+GD G GK+T +    +  FE+    T+GV+           
Sbjct: 4   MASA-AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG 62

Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
            +K  +WDTAGQE+F  L   YY  AQ  I+++DVT R T+ N+ + W +++     N  
Sbjct: 63  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVCEN-- 119

Query: 120 CIKLLVGNKVD 130
              +L GNKVD
Sbjct: 120 IPIVLCGNKVD 130

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  204 bits (521), Expect = 1e-68
 Identities = 51/130 (39%), Positives = 70/130 (53%), Gaps = 3/130 (2%)

Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKK 60
            S  +        KL+L+GD G GKS+L+L F  D F E    TIG  F  + +A+    
Sbjct: 1   GSMAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDAT 60

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +K  IWDTAGQER+ +L   YYRGA   I+V+DVT + +F      W +E+     N + 
Sbjct: 61  VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKK-WVQELQAQG-NPNM 118

Query: 121 IKLLVGNKVD 130
           +  L GNK D
Sbjct: 119 VMALAGNKSD 128

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  205 bits (523), Expect = 3e-68
 Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 4/127 (3%)

Query: 6   SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGV-DFKIKHVALGGKKMKL 63
           S +  +  +K+ LIGD GVGK+T +       FE+    T+G  +  +  +   G  +K 
Sbjct: 4   SMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKF 63

Query: 64  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL 123
            +WDTAGQE+   L   YY GA G I+ +DVT R T  NLA  W KE      N +   +
Sbjct: 64  NVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLAR-WVKEFQAVVGN-EAPIV 121

Query: 124 LVGNKVD 130
           +  NK+D
Sbjct: 122 VCANKID 128

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  204 bits (521), Expect = 4e-68
 Identities = 47/131 (35%), Positives = 73/131 (55%), Gaps = 3/131 (2%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGK 59
           M++          FKL+ +G+  VGK++L+  F  D+F+     TIG+DF  K + L  +
Sbjct: 4   MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 63

Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
            ++L +WDTAG ERFR+L  SY R +   ++VYD+T  ++F      W  ++       D
Sbjct: 64  TVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTK-WIDDVRTER-GSD 121

Query: 120 CIKLLVGNKVD 130
            I +LVGNK D
Sbjct: 122 VIIMLVGNKTD 132

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  202 bits (517), Expect = 5e-68
 Identities = 39/121 (32%), Positives = 72/121 (59%), Gaps = 4/121 (3%)

Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
           +   K++++G+  VGKS+++  +    F ++   TIGVDF  + + +  + ++L +WDTA
Sbjct: 3   EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTA 62

Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQE F  +T +YYRGAQ  ++V+  T R++F  ++  W +++     +      LV NK+
Sbjct: 63  GQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISS-WREKVVAEVGD--IPTALVQNKI 119

Query: 130 D 130
           D
Sbjct: 120 D 120

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  201 bits (515), Expect = 1e-67
 Identities = 48/124 (38%), Positives = 77/124 (62%), Gaps = 5/124 (4%)

Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
             LFK++L+GD GVGKS+L+  + ++ F  +L  TIGV+F  K + + G  + + IWDTA
Sbjct: 5   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 64

Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC---IKLLVG 126
           GQERFR+L + +YRG+   ++ + V    +F NL   W KE   Y+  ++      +++G
Sbjct: 65  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILG 123

Query: 127 NKVD 130
           NK+D
Sbjct: 124 NKID 127

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  199 bits (508), Expect = 3e-66
 Identities = 49/134 (36%), Positives = 78/134 (58%), Gaps = 10/134 (7%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGK 59
           M S         L K++++GDSGVGK++L+  + +  F      TIG DF  K V +  +
Sbjct: 1   MTS-----RKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDR 55

Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
            + + IWDTAGQERF++L  ++YRGA   ++V+DVT  +TF  L   W  E  + ++ +D
Sbjct: 56  LVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS-WRDEFLIQASPRD 114

Query: 120 C---IKLLVGNKVD 130
                 +++GNK+D
Sbjct: 115 PENFPFVVLGNKID 128

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  198 bits (506), Expect = 4e-66
 Identities = 50/130 (38%), Positives = 74/130 (56%), Gaps = 3/130 (2%)

Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKK 60
           +    +       K+ L+GD+GVGKS+++  F  D F+    PTIG  F  K V  G + 
Sbjct: 12  SGLVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNEL 71

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
            K  IWDTAGQERF +L   YYRG+   ++VYD+T++D+F  L   W KE+  +   ++ 
Sbjct: 72  HKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKK-WVKELKEHG-PENI 129

Query: 121 IKLLVGNKVD 130
           +  + GNK D
Sbjct: 130 VMAIAGNKCD 139

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  197 bits (504), Expect = 5e-66
 Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 5/125 (4%)

Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGK-KMKLAIWD 67
                K++++GD   GK++L   F  +TF +    TIG+DF ++ + L G   + L IWD
Sbjct: 3   HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWD 62

Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYST--NQDCIKLLV 125
             GQ     +   Y  GAQG+++VYD+T   +F NL D W   +   S       +  LV
Sbjct: 63  IGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLED-WYTVVKKVSEESETQPLVALV 121

Query: 126 GNKVD 130
           GNK+D
Sbjct: 122 GNKID 126

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  197 bits (502), Expect = 1e-65
 Identities = 49/129 (37%), Positives = 74/129 (57%), Gaps = 3/129 (2%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKM 61
           SS         FKL+ +G+  VGK++L+  F  D+F+     TIG+DF  K + L  + +
Sbjct: 4   SSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV 63

Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           +L +WDTAGQERFR+L  SY R +   ++VYD+T  ++F   +  W  ++       D I
Sbjct: 64  RLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSK-WIDDVRTER-GSDVI 121

Query: 122 KLLVGNKVD 130
            +LVGNK D
Sbjct: 122 IMLVGNKTD 130

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  195 bits (498), Expect = 3e-65
 Identities = 49/118 (41%), Positives = 70/118 (59%), Gaps = 3/118 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K+ L+GD+GVGKS+++  F  D+F+    PTIG  F  K V    +  K  IWDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           RFR L   YYRG+   I+VYD+T+ +TF+ L + W +E+  +      +  + GNK D
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-WVRELRQHG-PPSIVVAIAGNKCD 122

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  193 bits (492), Expect = 3e-64
 Identities = 52/120 (43%), Positives = 71/120 (59%), Gaps = 3/120 (2%)

Query: 12  YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAG 70
             FKL+L+G+S VGKS+L+L F    F E    TIG  F  + V L    +K  IWDTAG
Sbjct: 5   CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64

Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           QER+ +L   YYRGAQ  I+VYD+T  ++F    + W KE+   + + + +  L GNK D
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQA-SPNIVIALSGNKAD 122

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  192 bits (491), Expect = 7e-64
 Identities = 46/128 (35%), Positives = 79/128 (61%), Gaps = 6/128 (4%)

Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKM-KLAI 65
                + K++++GDSGVGK++L+  + +D + +    TIG DF  K V + G K+  + +
Sbjct: 3   SRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQV 62

Query: 66  WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYS---TNQDCIK 122
           WDTAGQERF++L  ++YRGA   ++VYDVT   +F N+   W  E  +++   + +    
Sbjct: 63  WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPF 121

Query: 123 LLVGNKVD 130
           +++GNK+D
Sbjct: 122 VILGNKID 129

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  192 bits (489), Expect = 2e-63
 Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 8/135 (5%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFT--SDTFEELS-PTIGVDFKIKHVALGGK 59
                       K+ ++G++ VGKS L+  FT     F +    T GV+  +  V +   
Sbjct: 10  VKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDT 69

Query: 60  KMKLAIW--DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYS-- 115
            + + ++  DTAG + ++   S Y+ G    I+V+DV+  ++F +    W + +      
Sbjct: 70  TVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKA-WFELLKSARPD 128

Query: 116 TNQDCIKLLVGNKVD 130
             +    +LV NK D
Sbjct: 129 RERPLRAVLVANKTD 143

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  177 bits (450), Expect = 1e-57
 Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 3/132 (2%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKM 61
           +   Q + D +FK++L+G+SGVGKSTL  +F     +    P    D   + + +  +++
Sbjct: 13  NLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEV 72

Query: 62  KLAIWDTAGQERFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
            L ++D   Q      L     +     ++V+ VT R +F+ + +     +     + D 
Sbjct: 73  TLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDL 131

Query: 121 IKLLVGNKVDKV 132
             +LVGNK D  
Sbjct: 132 PVILVGNKSDLA 143

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  173 bits (439), Expect = 8e-56
 Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 42/160 (26%)

Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKK------- 60
           E    +K +L+G+S VGKS+++L  T DTF E +  TIG  F    V L           
Sbjct: 3   EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNN 62

Query: 61  ------------------------------MKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90
                                         +K  IWDTAGQER+ ++   YYRGA   I+
Sbjct: 63  EKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIV 122

Query: 91  VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           V+D++  +T       W  ++     + + I +LV NK+D
Sbjct: 123 VFDISNSNTLDRAKT-WVNQLK---ISSNYIIILVANKID 158

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  168 bits (427), Expect = 4e-54
 Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 3/130 (2%)

Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK 60
                 Q    L K++++G  GVGKS L L F  D F E+  PT    ++ K V L G++
Sbjct: 7   GGGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEE 65

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           +++ I DTAGQE +  +  +Y+R  +G + V+ +T  ++F   AD + ++I     +++ 
Sbjct: 66  VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENV 124

Query: 121 IKLLVGNKVD 130
             LLVGNK D
Sbjct: 125 PFLLVGNKSD 134

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  168 bits (427), Expect = 5e-54
 Identities = 46/132 (34%), Positives = 77/132 (58%), Gaps = 4/132 (3%)

Query: 1   MASSTSQ-QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGG 58
           MA++  + Q    L K++++G  GVGKS L L F  D F E+  PT    ++ K V L G
Sbjct: 1   MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDG 59

Query: 59  KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ 118
           +++++ I DTAGQE +  +  +Y+R  +G + V+ +T  ++F   AD + ++I     ++
Sbjct: 60  EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDE 118

Query: 119 DCIKLLVGNKVD 130
           +   LLVGNK D
Sbjct: 119 NVPFLLVGNKSD 130

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  167 bits (425), Expect = 5e-54
 Identities = 45/131 (34%), Positives = 67/131 (51%), Gaps = 3/131 (2%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
           MA+S    E    +KL+++GD GVGKS L + F    F ++  PTI  D  +KH  +  +
Sbjct: 6   MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQ 64

Query: 60  KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
              L + DTAGQE F  +   Y R   G ++VY VT + +F ++     + I      + 
Sbjct: 65  WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFH-QLILRVKDRES 123

Query: 120 CIKLLVGNKVD 130
              +LV NKVD
Sbjct: 124 FPMILVANKVD 134

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  167 bits (424), Expect = 8e-54
 Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 8/125 (6%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS---PTIGVDFKIKHVALGGKK---MKLAIWD 67
            KL+++G++G GK+TLL         +L     T+G+D K   + +  K+   + L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
            AG+E F +    +       + VYD+++     +    W   I   +++     +LVG 
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASS--SPVILVGT 120

Query: 128 KVDKV 132
            +D  
Sbjct: 121 HLDVS 125

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  165 bits (421), Expect = 2e-53
 Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 3/123 (2%)

Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
                 KL+++G  GVGKS L + F    F  +  PTI  D   K  ++ G   +L I D
Sbjct: 5   PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILD 63

Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQE F  +   Y R   G ++V+ +  R +F  +  ++  +I       D   +LVGN
Sbjct: 64  TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLF-TQILRVKDRDDFPVVLVGN 122

Query: 128 KVD 130
           K D
Sbjct: 123 KAD 125

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  165 bits (419), Expect = 3e-53
 Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 3/118 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            KL+L+G++ VGKS+++L F S+ F E   PTIG  F  + V +    +K  IWDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           RF +L   YYR AQ  ++VYDVT+  +F      W KE+   + ++D I  LVGNK+D
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKARH-WVKELHEQA-SKDIIIALVGNKID 119

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  164 bits (418), Expect = 6e-53
 Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           +FK++L+G+SGVGKSTL  +F     +         D   + + +  +++ L ++D   Q
Sbjct: 2   VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61

Query: 72  ERFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
                 L     +     ++V+ VT R +F+ + +     +     + D   +LVGNK D
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSD 120

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  163 bits (414), Expect = 4e-52
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 2/126 (1%)

Query: 6   SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLA 64
           S  E    +++++ G  GVGKS+L+L F   TF +   PTI   ++ + ++       L 
Sbjct: 1   SMPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQ 59

Query: 65  IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL 124
           I DT G  +F  +           I+V+ VT + +   L  I+   + +  + +D   +L
Sbjct: 60  ITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVML 119

Query: 125 VGNKVD 130
           VGNK D
Sbjct: 120 VGNKCD 125

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  158 bits (401), Expect = 2e-50
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 2/118 (1%)

Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           ++K+LL+G  GVGKS L   F        +   G  +  + + + G++  L ++D   Q+
Sbjct: 2   VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
             R L           ++VY VT + +F   ++    ++       D   +LVGNK D
Sbjct: 61  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSD 117

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  158 bits (401), Expect = 2e-50
 Identities = 43/119 (36%), Positives = 71/119 (59%), Gaps = 3/119 (2%)

Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++++G  GVGKS L L F  D F E+  PT    ++ K V L G+++++ I DTAGQ
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 62

Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           E +  +  +Y+R  +G + V+ +T  ++F   AD + ++I     +++   LLVGNK D
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSD 120

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  157 bits (400), Expect = 2e-50
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSD 119

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  155 bits (394), Expect = 3e-49
 Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     + D   +LVGNK D
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINL-YREQIKRVKDSDDVPMVLVGNKCD 137

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  154 bits (393), Expect = 4e-49
 Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 3/120 (2%)

Query: 12  YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70
              K+ ++G   VGKS+L + F    F +   PTI   F  K + + G++  L + DTAG
Sbjct: 5   KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAG 63

Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           Q+ +     +Y     G I+VY VT   +F  +  I  K +D+    Q  I +LVGNK D
Sbjct: 64  QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKD 122

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  154 bits (391), Expect = 6e-49
 Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 3/118 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +K++++G  GVGKS L + F + TF E+  PTI  DF  K + +      L I DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +F ++   Y +  QG I+VY +  + +F ++  +   +I      +    +LVGNKVD
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMR-DQIIRVKRYEKVPVILVGNKVD 119

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  154 bits (392), Expect = 9e-49
 Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 3/118 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L +    + F +E  PTI   ++ K V + G+   L I DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  +   Y R  +G + V+ +    +F ++   + ++I     ++D   +LVGNK D
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCD 120

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  152 bits (387), Expect = 3e-48
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 2/118 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +++ + G  GVGKS+L+L F   TF E   PT+   ++ + ++       L I DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +F  +           I+VY +T R +   L  I+ +  ++    +    +LVGNK D
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCD 120

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  152 bits (387), Expect = 7e-48
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 3/129 (2%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKM 61
                       K++++G   VGK++L   F    F E   PT+   +  K V LG  + 
Sbjct: 14  LYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEF 72

Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
            L + DTAGQ+ +  L  S+  G  G ++VY VT   +F  +     +++          
Sbjct: 73  HLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIES-LYQKLHEGHGKTRVP 131

Query: 122 KLLVGNKVD 130
            +LVGNK D
Sbjct: 132 VVLVGNKAD 140

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  151 bits (383), Expect = 1e-47
 Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 3/118 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           +KL+++G  GVGKS L + F    F E+  PTI   ++ K V +  ++  L I DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +F  +   Y +  QG  +VY +T + TF +L D   ++I      +D   +LVGNK D
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCD 119

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  150 bits (380), Expect = 3e-47
 Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           L++++L+GD GVGK++L   F      +L   +G D   + + + G+   L + DT   E
Sbjct: 4   LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAE 63

Query: 73  RFRTLTS--SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +     S  S  +G    ++VY +  R +F + +++   ++           +LVGNK D
Sbjct: 64  KLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELR-IQLRRTHQADHVPIILVGNKAD 122

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  147 bits (374), Expect = 6e-46
 Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 10/134 (7%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF---EELSPTIGVDFKIKHVALGGK 59
           S  S +  +  ++++LIG+ GVGKSTL   F         +       D   + + + G+
Sbjct: 27  SVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLG-EDTYERTLMVDGE 85

Query: 60  K---MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYST 116
               + L +W+  G+  +  L     +     ++VY +T R +F   ++    ++     
Sbjct: 86  SATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASE-LRIQLRRARQ 142

Query: 117 NQDCIKLLVGNKVD 130
            +D   +LVGNK D
Sbjct: 143 TEDIPIILVGNKSD 156

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  143 bits (362), Expect = 3e-44
 Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 4/128 (3%)

Query: 4   STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMK 62
                      KL + G +GVGKS L++ F +  F  E  PT+   ++     +  + + 
Sbjct: 19  YFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVS 77

Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
           + I DTAGQE        + R  +G ++VYD+T R +F  +       +D     ++   
Sbjct: 78  MEILDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTL 135

Query: 123 LLVGNKVD 130
           +LVGNK D
Sbjct: 136 ILVGNKAD 143

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  141 bits (358), Expect = 1e-43
 Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 8/123 (6%)

Query: 13  LFKLLLIGDSGVGKSTLLLSFT--SDTFEELSPTIGVDFKIKHVALGGKK---MKLAIWD 67
            ++++LIG+ GVGKSTL   F    D+ +     +G D   + + + G+    + L +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65

Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
             G+  +  L     +     ++VY +T R +F   ++    ++      +D   +LVGN
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGN 122

Query: 128 KVD 130
           K D
Sbjct: 123 KSD 125

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  139 bits (353), Expect = 4e-43
 Identities = 23/132 (17%), Positives = 54/132 (40%), Gaps = 15/132 (11%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMK 62
           S  S  E     +L ++GD+  GKS+L+  F + +++ L  T    +K K + + G+   
Sbjct: 1   SMRSIPEL----RLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK-KEMLVDGQTHL 55

Query: 63  LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLY----STNQ 118
           + I + AG    +     +   A  +I V+ +   ++F  ++     ++           
Sbjct: 56  VLIREEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSR-LHGQLSSLRGEGRGGL 109

Query: 119 DCIKLLVGNKVD 130
               +   +++ 
Sbjct: 110 ALALVGTQDRIS 121

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  138 bits (351), Expect = 1e-42
 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 8/131 (6%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKM 61
           +   Q   +    L ++G  G GKS L + F +  F  E  P +   +      +  + +
Sbjct: 13  NLYFQGPLEV--NLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPV 69

Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLY--STNQD 119
            L + DTA  +  R     Y   A   ++VY V  R +F + +    + + L+   T + 
Sbjct: 70  HLRVMDTADLDTPRNCE-RYLNWAHAFLVVYSVDSRQSFDSSSSYL-ELLALHAKETQRS 127

Query: 120 CIKLLVGNKVD 130
              LL+GNK+D
Sbjct: 128 IPALLLGNKLD 138

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  133 bits (337), Expect = 1e-40
 Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 7/117 (5%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            K+ ++G+   GKS L+  + + T+ +     G  FK K + + G+   L I D  G   
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFK-KEIVVDGQSYLLLIRDEGGPPE 79

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +     +      ++ V+ +    +F  +   +   +  +    +   +LVG +  
Sbjct: 80  LQ-----FAAWVDAVVFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDA 130

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  130 bits (330), Expect = 2e-39
 Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 4/129 (3%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKM 61
            +   +      K++++GD  VGK+ LLL+F+         PT+  +F    +    ++ 
Sbjct: 13  GAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHV-MKYKNEEF 71

Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
            L +WDTAGQE +  L    Y  +  +++ + V  R +F N++  W  EI  Y       
Sbjct: 72  ILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT--AK 129

Query: 122 KLLVGNKVD 130
            +LVG KVD
Sbjct: 130 TVLVGLKVD 138

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  136 bits (343), Expect = 1e-38
 Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 15/141 (10%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-- 57
             S           K+ LIGD   GK++LL     +TF  + S T G++   K       
Sbjct: 29  ARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKG 88

Query: 58  ------GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI 111
                  K+     WD  GQE        +   +   +++ D     T +N    W + I
Sbjct: 89  LENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNK-HYWLRHI 144

Query: 112 DLYSTNQDCIKLLVGNKVDKV 132
           + Y        ++V NK+D+ 
Sbjct: 145 EKYGGK--SPVIVVMNKIDEN 163

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  122 bits (307), Expect = 3e-36
 Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 4/118 (3%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K + +GD  VGK+ LL+S+TS+TF  +  PT+  +F    V + G  + L +WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQE 67

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    YRGA   I+ + +  + ++ N++  W  E+  Y+     +  LVG K+D
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIV--LVGTKLD 123

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  122 bits (309), Expect = 4e-36
 Identities = 38/118 (32%), Positives = 68/118 (57%), Gaps = 4/118 (3%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K++L+GD G GK++LL+ F    F E  +PT+   + + ++ + GK + L IWDTAGQ+
Sbjct: 35  VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQD 93

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L   +Y  A  +++ +DVT  ++F N+ + W  E++ +        ++VG K D
Sbjct: 94  DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKK--VPIIVVGCKTD 149

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  119 bits (299), Expect = 1e-34
 Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 4/130 (3%)

Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK 60
             S      +   K++++GDS  GK+ LL  F  D F E   PT+  ++      +  ++
Sbjct: 17  RGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFE-IDTQR 75

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           ++L++WDT+G   +  +    Y  +  +++ +D++R +T  ++   W  EI  +  N   
Sbjct: 76  IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN--T 133

Query: 121 IKLLVGNKVD 130
             LLVG K D
Sbjct: 134 KMLLVGCKSD 143

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  117 bits (295), Expect = 3e-34
 Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 4/121 (3%)

Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
               KL+++GD   GK+ LL+ F+ D F E   PT+  +  I  + + GK+++LA+WDTA
Sbjct: 23  AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTA 81

Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQE +  L    Y     I+M + +   D+  N+ + W  E+  +  N     +LVGNK 
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN--VPIILVGNKK 139

Query: 130 D 130
           D
Sbjct: 140 D 140

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  116 bits (293), Expect = 1e-33
 Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 4/117 (3%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+++GD   GK+ LL+ F+ D F E   PT+  ++ +  + + GK+++LA+WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L    Y     I+M + V   D+  N+ + W  E+  +  N     +LV NK D
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPN--VPIILVANKKD 140

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  114 bits (288), Expect = 4e-33
 Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 4/130 (3%)

Query: 2   ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK 60
            SS +      + K +++GD  VGK+ LL+S+ +D F EE  PT+  D     V +GGK+
Sbjct: 7   RSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQ 65

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
             L ++DTAGQE +  L    Y      ++ + V    +F N+ + W  E+  Y+ N   
Sbjct: 66  YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN--V 123

Query: 121 IKLLVGNKVD 130
             LL+G ++D
Sbjct: 124 PFLLIGTQID 133

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  114 bits (287), Expect = 7e-33
 Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 4/129 (3%)

Query: 3   SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKM 61
              + Q      KL+L+GD   GK+ +L     D + E   PT+  ++         +++
Sbjct: 17  QGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLE-TEEQRV 75

Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
           +L++WDT+G   +  +    Y  +  +++ +D++R +T  +    W  EI  Y  +    
Sbjct: 76  ELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPS--TR 133

Query: 122 KLLVGNKVD 130
            LL+G K D
Sbjct: 134 VLLIGCKTD 142

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  114 bits (287), Expect = 8e-33
 Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 4/118 (3%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  D    +V + GK + L +WDTAGQE
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    Y      ++ + +    +F N+   W  E+  +  N     +LVG K+D
Sbjct: 90  DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPN--TPIILVGTKLD 145

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  114 bits (287), Expect = 8e-33
 Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 4/118 (3%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K + +GD  VGK+ +L+ +TS+ F  +  PT+  +F   +VA+ G+ + L +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQE 68

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    YRGA   ++ + +  + ++ N+   W  E+  ++ N   +  LVG K+D
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIV--LVGTKLD 124

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  112 bits (283), Expect = 2e-32
 Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 4/117 (3%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K++++GDS  GK+ LL  F  D F E   PT+  ++      +  ++++L++WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFE-IDTQRIELSLWDTSGSPY 67

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  +    Y  +  +++ +D++R +T  ++   W  EI  +  N     LLVG K D
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN--TKMLLVGCKSD 122

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  112 bits (282), Expect = 3e-32
 Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 2/116 (1%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           K +++GD  VGK+ LL+S+T++ F         D    +V + GK + L +WDTAGQE +
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 66

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
             L    Y      ++ + +    +F N+   W  E+  +  N     +LVG K+D
Sbjct: 67  DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN--TPIILVGTKLD 120

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  111 bits (280), Expect = 7e-32
 Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 4/117 (3%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K +L+GD  VGK++L++S+T++ +  E  PT   D     V++ G+ ++L + DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQDE 80

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           F  L    Y      ++ + V    +F N+++ W  EI  +        +LVG + D
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPK--APIILVGTQSD 135

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 83.3 bits (206), Expect = 8e-21
 Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 15/132 (11%)

Query: 14  FKLLLIGDSGVGKSTLL----LSFTSDTFEEL-------SPTIGVDF-KIKHVALGGKKM 61
           FK++  G    GK+T L             E+         T+  DF  +    + G K 
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 62  KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWA--KEIDLYSTNQD 119
           +  ++   GQ  +        RG  GI+ V D        N   +    + +  Y    D
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134

Query: 120 CIKLLVG-NKVD 130
            + +++  NK D
Sbjct: 135 DVPIVIQVNKRD 146

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 82.7 bits (204), Expect = 7e-20
 Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 2/130 (1%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
             +    +    L K +++GD  VGK+ LL+S+T++ F         D    +V + GK 
Sbjct: 143 KTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP 202

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
           + L +WDTAG E +  L    Y      ++ + +    +F ++   W  E+  +  N   
Sbjct: 203 VNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI 262

Query: 121 IKLLVGNKVD 130
           I  LVG K+D
Sbjct: 263 I--LVGTKLD 270

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 71.1 bits (175), Expect = 2e-16
 Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 13/121 (10%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G  G GK+T+L            PTIG  F ++ V    K +K  +WD  G   
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEVVTTIPTIG--FNVETVTY--KNLKFQVWDLGGLTS 63

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTN----LADIWAKEIDLYSTNQDCIKLLVGNKV 129
            R     YY     +I V D   RD        L  +  +E +L    +  I ++  NK 
Sbjct: 64  IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAM-LEEEEL----RKAILVVFANKQ 118

Query: 130 D 130
           D
Sbjct: 119 D 119

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 71.2 bits (175), Expect = 2e-16
 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 10/126 (7%)

Query: 10  FDYLF-----KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLA 64
           F  +F     ++L++G    GK+T+L            PTIG  F ++ V    K +   
Sbjct: 21  FSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNICFT 76

Query: 65  IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL 124
           +WD  GQ++ R L   Y++  QG+I V D   R+     +    +++      +D + L+
Sbjct: 77  VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERV-QESADELQKMLQEDELRDAVLLV 135

Query: 125 VGNKVD 130
             NK D
Sbjct: 136 FANKQD 141

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 71.1 bits (175), Expect = 3e-16
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            K++++G    GK+T+L  F+ +     SPTIG    ++ + +     +  +WD  GQE 
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG--SNVEEIVI--NNTRFLMWDIGGQES 72

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTF 100
            R+  ++YY   + +I+V D T R+  
Sbjct: 73  LRSSWNTYYTNTEFVIVVVDSTDRERI 99

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 69.9 bits (172), Expect = 4e-16
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 13/120 (10%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           ++L++G    GK+T+L            PTIG  F ++ V    K +   +WD  GQ++ 
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDKI 57

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTF----TNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           R L   Y++  QG+I V D   R+        L  +   E +L    +D + L+  NK D
Sbjct: 58  RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM-LAEDEL----RDAVLLVFANKQD 112

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 70.4 bits (173), Expect = 4e-16
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 4/85 (4%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            K++++G    GK+T+L  F+ +     SPTIG    ++ + +     +  +WD  GQE 
Sbjct: 22  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG--SNVEEIVI--NNTRFLMWDIGGQES 77

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRD 98
            R+  ++YY   + +I+V D T R+
Sbjct: 78  LRSSWNTYYTNTEFVIVVVDSTDRE 102

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 70.3 bits (173), Expect = 5e-16
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           +LL++G    GK+T+L  F  +  + +SPT+G  F IK +    +  KL IWD  GQ+ 
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG--FNIKTLEH--RGFKLNIWDVGGQKS 74

Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
           R+   +Y+    G+I V D   R 
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADRQ 99

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 70.0 bits (172), Expect = 7e-16
 Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 17/130 (13%)

Query: 10  FDYLF------KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKL 63
           FD L+      ++L++G  G GK+T+L            PTIG  F ++ ++   K +KL
Sbjct: 9   FDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIG--FNVETLSY--KNLKL 64

Query: 64  AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAK---EIDLYSTNQDC 120
            +WD  GQ   R     YY     +I V D T +D  +  +        E +L    QD 
Sbjct: 65  NVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEEL----QDA 120

Query: 121 IKLLVGNKVD 130
             L+  NK D
Sbjct: 121 ALLVFANKQD 130

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 69.2 bits (169), Expect = 2e-15
 Identities = 27/129 (20%), Positives = 45/129 (34%), Gaps = 19/129 (14%)

Query: 15  KLLLIGDSGVGKSTLLLSFTS-----DTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
           ++LL+G    GKS++           +T   L  T         ++     +   IWD  
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHKMSPNETL-FLESTNK--IYKDDISNSS-FVNFQIWDFP 77

Query: 70  GQERFRTLTS---SYYRGAQGIIMVYDVTRR--DTFTNLADIWAKEIDLYSTNQDCIKLL 124
           GQ  F   T      +RG   +I V D      +  T L      +    + +   +   
Sbjct: 78  GQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHI-TVSKAYKVNPD---MNFE 133

Query: 125 V-GNKVDKV 132
           V  +KVD +
Sbjct: 134 VFIHKVDGL 142

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 68.4 bits (168), Expect = 2e-15
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           ++LL+G    GK+TLL    S+    ++PT G  F IK V    +  KL +WD  GQ +
Sbjct: 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQS--QGFKLNVWDIGGQRK 72

Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
           R    SY+     +I V D   R 
Sbjct: 73 IRPYWRSYFENTDILIYVIDSADRK 97

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 68.0 bits (167), Expect = 3e-15
 Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 13/121 (10%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+++L            PT+G    ++ +    K +   +WD  GQ  
Sbjct: 23  IRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVG--VNLETLQY--KNISFEVWDLGGQTG 78

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTN----LADIWAKEIDLYSTNQDCIKLLVGNKV 129
            R     Y+     +I V D T RD        L  +   E +L    +  + L+  NK 
Sbjct: 79  VRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYAL-LDEDEL----RKSLLLIFANKQ 133

Query: 130 D 130
           D
Sbjct: 134 D 134

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 70.0 bits (171), Expect = 4e-15
 Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 12/127 (9%)

Query: 15  KLLLIGDSGVGKST----LLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70
           KLLL+G SG GKS+    +  ++++     L  TI    +  H+   G  M L +WD  G
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATID--VEHSHLRFLGN-MTLNLWDCGG 61

Query: 71  QERF-----RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLV 125
           Q+ F            ++  Q +I V+DV   +   ++         L   + D    ++
Sbjct: 62  QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVL 121

Query: 126 GNKVDKV 132
            +K+D V
Sbjct: 122 LHKMDLV 128

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 67.3 bits (165), Expect = 8e-15
 Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 11/119 (9%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           KL+ +G    GK+TLL     D   +  PT+      + + + G  M    +D  G  + 
Sbjct: 27  KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLH--PTSEELTIAG--MTFTTFDLGGHIQA 82

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDL---YSTNQDCIKLLVGNKVD 130
           R +  +Y     GI+ + D    +          +E+D      T  +   L++GNK+D
Sbjct: 83  RRVWKNYLPAINGIVFLVDCADHERL----LESKEELDSLMTDETIANVPILILGNKID 137

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 66.4 bits (163), Expect = 1e-14
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 13/120 (10%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           KLL +G    GK+TLL    +D    L PT       + +A+    +K   +D  G  + 
Sbjct: 25  KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWH--PTSEELAI--GNIKFTTFDLGGHIQA 80

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTF----TNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           R L   Y+    GI+ + D    + F      L  ++          +D   +++GNK+D
Sbjct: 81  RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIA-----ELKDVPFVILGNKID 135

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 65.8 bits (161), Expect = 3e-14
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 13/123 (10%)

Query: 14  FKLLLIGDSGVGKSTLL--LSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
             +L +G    GK+T++  L  ++   + + PTIG  F I+        +   ++D +GQ
Sbjct: 22  VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKS--SSLSFTVFDMSGQ 77

Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTF----TNLADIWAKEIDLYSTNQDCIKLLVGN 127
            R+R L   YY+  Q II V D + R         L  +     D+   ++    L   N
Sbjct: 78  GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHP-DI--KHRRIPILFFAN 134

Query: 128 KVD 130
           K+D
Sbjct: 135 KMD 137

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 65.3 bits (160), Expect = 4e-14
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 14/122 (11%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            +L L+G    GK+T +    S  F E++ PT+G  F ++ +  G   +K  +WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIK--LWDIGGQP 78

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTN----LADIWAKEIDLYSTNQDCIKLLVGNK 128
           RFR++   Y RG   I+ + D   ++        L ++  K        Q    L++GNK
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP-----QLQGIPVLVLGNK 133

Query: 129 VD 130
            D
Sbjct: 134 RD 135

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 64.1 bits (156), Expect = 5e-13
 Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 13/134 (9%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
                         ++L++G    GK+T+L            PTIG  F ++ V    K 
Sbjct: 153 TPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KN 208

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTN----LADIWAKEIDLYST 116
           +   +WD  GQ++ R L   Y++  QG+I V D   R+        L  +   E +L   
Sbjct: 209 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRM-LAEDEL--- 264

Query: 117 NQDCIKLLVGNKVD 130
            +D + L+  NK D
Sbjct: 265 -RDAVLLVFANKQD 277

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 61.3 bits (149), Expect = 2e-12
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 10/122 (8%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK-MKLAIWDTAGQER 73
            +L +G    GK+ L +   +  + +   +I          +   +   L + D  G E 
Sbjct: 9   AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT--DSSAIYKVNNNRGNSLTLIDLPGHES 66

Query: 74  FR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTN---QDCIKLLV-GNK 128
            R  L   +   A+ ++ V D         + D+      +   +   ++   LL+  NK
Sbjct: 67  LRFQLLDRFKSSARAVVFVVDSA--AFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124

Query: 129 VD 130
            D
Sbjct: 125 QD 126

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 56.3 bits (136), Expect = 9e-11
 Identities = 23/129 (17%), Positives = 45/129 (34%), Gaps = 20/129 (15%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
            +++ G    GK++LL   T+D+      +          A       + + D  G  + 
Sbjct: 50  SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-----PLSAADYDGSGVTLVDFPGHVKL 104

Query: 75  RTLTSSYYR----GAQGIIMVYD-VTRRDTFTNLADIWAKEI-DLYSTNQDCIK-----L 123
           R   S Y +      +G+I + D          L    A+ + D+ S  +   +     L
Sbjct: 105 RYKLSDYLKTRAKFVKGLIFMVDSTVDPK---KLTTT-AEFLVDILSITESSCENGIDIL 160

Query: 124 LVGNKVDKV 132
           +  NK +  
Sbjct: 161 IACNKSELF 169

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 18/127 (14%)

Query: 16  LLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR 75
           +++ G    GK++LL   T+D+      +          A       + + D  G  + R
Sbjct: 15  IIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE-----PLSAADYDGSGVTLVDFPGHVKLR 69

Query: 76  TLTSSYY----RGAQGIIMVYD-VTRRDTFTNLADIWAKEIDLYSTNQDCIK-----LLV 125
              S Y     +  +G+I + D          L       +D+ S  +   +     L+ 
Sbjct: 70  YKLSDYLKTRAKFVKGLIFMVDSTVDPK---KLTTTAEFLVDILSITESSCENGIDILIA 126

Query: 126 GNKVDKV 132
            NK +  
Sbjct: 127 CNKSELF 133

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 56.2 bits (135), Expect = 2e-10
 Identities = 25/176 (14%), Positives = 42/176 (23%), Gaps = 66/176 (37%)

Query: 20  GDSGVGKSTLLLSFTS----DTFEELSPTIG-VDFKIKHV--------------ALGGKK 60
           G  G+GKS L   F      +   + +  +   DF  + V                   +
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 61  MKLAIW-------DTAGQERFRTLTSSYYRGA---------------------------- 85
            K+ I        D   Q    T    Y + A                            
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 86  ---------QGIIMVYDVTRRD--TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
                     G ++  DV+R     F +    +   +           ++V  K D
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLK-FVSNLYNQLAKTKKPIVVVLTKCD 209

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 56.6 bits (136), Expect = 2e-10
 Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 9/122 (7%)

Query: 16  LLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR 75
           +LL+G    GKS++      +     +  +               + LA+ +  GQ  + 
Sbjct: 2   VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFST-LIDLAVMELPGQLNYF 60

Query: 76  TLT---SSYYRGAQGIIMVYDVTR--RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
             +      ++    ++ V D      +  TNLA I       Y  N      ++ +KVD
Sbjct: 61  EPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEY---AYKVNPSINIEVLIHKVD 117

Query: 131 KV 132
            +
Sbjct: 118 GL 119

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* Length = 301

 Score = 40.9 bits (95), Expect = 5e-05
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 10/78 (12%)

Query: 14 FKLLLIGDSGVGKSTLLLS-FTSDTF---------EELSPTIGVDFKIKHVALGGKKMKL 63
          F L+++G+SG+GKSTL+ S F +D +         E++  T+ ++     +   G K++L
Sbjct: 19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRL 78

Query: 64 AIWDTAGQERFRTLTSSY 81
           + DT G          +
Sbjct: 79 TVVDTPGYGDAINCRDCF 96

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427

 Score = 40.9 bits (95), Expect = 5e-05
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 14  FKLLLIGDSGVGKSTLL-----LSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
           F +L +G++G+GKSTL+       F  +      P + +      +     ++KL I  T
Sbjct: 43  FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVST 102

Query: 69  AG 70
            G
Sbjct: 103 VG 104

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* Length = 274

 Score = 37.4 bits (86), Expect = 8e-04
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 9/66 (13%)

Query: 14 FKLLLIGDSGVGKSTLLLS-FTSDTF--------EELSPTIGVDFKIKHVALGGKKMKLA 64
          F L+++G+SG+GKSTL+ S F +D +          +  T+ V+     +  GG ++ L 
Sbjct: 9  FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLT 68

Query: 65 IWDTAG 70
          I DT G
Sbjct: 69 IVDTPG 74

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	154
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.97
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.96
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.96
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.96
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.96
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.96
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.96
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.96
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.96
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.96
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.96
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.96
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.96
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.96
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.96
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.96
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.96
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.96
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.96
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.96
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.96
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.96
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.96
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.96
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.96
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.96
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.96
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.96
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.96
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.96
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.96
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.96
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.96
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.96
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.96
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.95
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.95
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.95
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.95
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.95
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.95
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.95
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.95
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.95
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.95
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.95
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.95
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.95
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.95
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.95
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.95
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.95
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.95
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.95
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.95
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.95
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.95
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.95
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.95
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.95
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.95
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.95
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.95
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.95
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.95
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.95
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.95
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.94
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.94
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.94
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.94
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.94
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.94
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.94
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.94
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.94
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.94
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.94
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.94
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.94
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.94
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.94
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.94
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.94
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.94
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.93
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.93
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.93
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.93
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.93
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.93
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.93
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.93
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.92
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.92
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.92
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.92
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.91
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.91
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.91
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.85
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.91
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.91
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.9
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.9
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.89
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.89
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.88
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.88
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.88
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.88
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.88
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.87
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.87
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.87
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.86
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.86
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.86
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.86
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.86
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.85
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.85
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.85
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.85
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.85
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.85
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.84
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.83
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.83
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.83
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.83
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.83
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.82
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.82
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.81
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.81
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.81
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.81
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.81
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.8
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.8
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.78
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.78
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.78
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.78
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.77
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.77
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.77
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.77
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.77
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.77
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.76
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.76
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.76
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.76
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.75
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.75
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.75
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.75
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.75
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.75
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.75
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.74
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.74
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.73
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.73
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.73
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.72
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.72
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.72
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.72
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.72
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.71
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.71
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.71
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.7
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.7
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.7
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.7
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.69
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.69
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.68
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.65
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.63
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.63
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.62
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.59
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.58
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.56
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.55
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.54
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.51
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.49
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.47
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.45
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.45
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.43
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.41
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.4
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.38
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.34
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.2
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.18
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.16
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.14
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.13
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.11
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.08
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.06
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.94
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.9
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.87
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.86
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.86
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.81
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.62
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.46
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	98.41
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.33
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.29
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.12
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.06
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.06
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.04
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.02
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	97.93
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.87
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	97.78
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.76
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.66
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.64
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.62
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.62
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.58
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.47
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.46
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.45
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.45
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.45
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.42
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.42
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.42
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.41
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.41
2xxa_A	433	Signal recognition particle protein; protein trans	97.41
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.37
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.37
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.34
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.31
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.27
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.27
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.26
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.25
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.25
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.25
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.24
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.24
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.24
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.24
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.24
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.23
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	97.22
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.21
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.2
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.19
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.19
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.19
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.19
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.18
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.18
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.17
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.17
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.17
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.17
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.16
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.16
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.15
1g6h_A	257	High-affinity branched-chain amino acid transport	97.15
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.14
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.14
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.13
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.12
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.12
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.12
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.11
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.11
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.11
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.1
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.1
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.1
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.1
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.1
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.1
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.1
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.09
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.09
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.09
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.08
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.08
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.07
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.07
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.07
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.07
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.06
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.06
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.05
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.05
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.04
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.04
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.04
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.04
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.03
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.02
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.02
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.02
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.01
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.01
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.0
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.0
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.99
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.98
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.97
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.97
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.96
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.95
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.95
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.94
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.93
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.92
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.91
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.91
1via_A	175	Shikimate kinase; structural genomics, transferase	96.9
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.9
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.89
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.89
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.89
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.89
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.89
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.88
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.88
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.88
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.87
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.87
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.85
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.85
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.85
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.85
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.85
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.84
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.84
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.83
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.83
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.83
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.81
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.81
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.8
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.8
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.79
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.79
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.79
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.79
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.78
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.78
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.77
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.77
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.77
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.76
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.76
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.75
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.75
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.75
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.75
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.75
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.75
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.74
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.72
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.71
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.71
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.71
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.71
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.7
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.69
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.69
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.68
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.67
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.66
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.65
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.65
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.64
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.64
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.6
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.6
3co5_A	143	Putative two-component system transcriptional RES	96.6
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.6
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.59
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.58
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.56
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.56
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.55
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.53
3bos_A	242	Putative DNA replication factor; P-loop containing	96.52
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.52
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.51
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.5
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.5
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.5
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.49
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.47
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.47
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.47
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.45
2og2_A	359	Putative signal recognition particle receptor; nuc	96.44
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.42
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.42
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.41
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.4
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.39
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.34
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.34
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.33
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.32
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.32
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.3
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.29
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.29
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.28
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.27
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.27
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.25
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.24
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.23
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.22
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.22
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.21
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.17
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.17
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.17
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.13
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.13
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.13
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.13
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.11
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.09
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.08
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.08
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.07
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.07
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.05
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.05
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.03
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.02
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.0
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.99
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.97
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.96
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.96
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.96
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.95
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.95
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.94
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.93
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.92
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.91
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.87
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.87
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.86
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.86
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.84
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.84
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.8
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.79
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.79
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.78
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.74
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.73
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.73
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	95.73
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.7
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.69
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.68
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.68
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.68
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.66
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.64
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.64
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.61
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.6
2fna_A	357	Conserved hypothetical protein; structural genomic	95.59
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.57
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.56
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	95.55
2qgz_A	308	Helicase loader, putative primosome component; str	95.55
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.55
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.53
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.52
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.52
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.52
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.51

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=5.3e-33  Score=192.84  Aligned_cols=142  Identities=33%  Similarity=0.586  Sum_probs=110.0

Q ss_pred             CCCCcccCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccc
Q 031704            1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTS   79 (154)
Q Consensus         1 m~~~~~~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   79 (154)
                      |+......+..+.+||+++|.+|+|||||+++|..+.+ ..+.|+.+.++.......++..+.+.+|||+|++++..++.
T Consensus         1 ms~~~~~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~   80 (216)
T 4dkx_A            1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIP   80 (216)
T ss_dssp             ------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHH
T ss_pred             CCCCCCCCCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHH
Confidence            44444444445679999999999999999999999998 66778999899888999999999999999999999999999


Q ss_pred             ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhh
Q 031704           80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWH  144 (154)
Q Consensus        80 ~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~  144 (154)
                      .+++.++++++|||++++++|+.+.. |...+... ...+.|++|||||+|+.+.+++..++...
T Consensus        81 ~~~~~a~~~ilv~di~~~~Sf~~i~~-~~~~i~~~-~~~~~piilVgNK~Dl~~~r~V~~~e~~~  143 (216)
T 4dkx_A           81 SYIRDSAAAVVVYDITNVNSFQQTTK-WIDDVRTE-RGSDVIIMLVGNKTDLADKRQVSIEEGER  143 (216)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHH-HHHHHHHH-HTTSSEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             HHhccccEEEEEeecchhHHHHHHHH-HHHHHHHh-cCCCCeEEEEeeccchHhcCcccHHHHhh
Confidence            99999999999999999999999998 88887766 45678999999999999888876665544

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.97  E-value=4.3e-29  Score=168.24  Aligned_cols=139  Identities=31%  Similarity=0.497  Sum_probs=113.2

Q ss_pred             CCCcccCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccc
Q 031704            2 ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSS   80 (154)
Q Consensus         2 ~~~~~~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   80 (154)
                      ++...+......+||+++|.+|+|||||++++.++.+ ..+.++.+..+ ......++..+.+.+|||||++.+...+..
T Consensus         7 ~~~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~   85 (183)
T 3kkq_A            7 ATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQ   85 (183)
T ss_dssp             -------CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHH
T ss_pred             ccccCCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHH
Confidence            3344445566789999999999999999999999887 45556666555 677788899999999999999999999999


Q ss_pred             cccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        81 ~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      +++.+|++++|||++++.+++.+.. |...+.......+.|+++|+||+|+.+++.+..++.
T Consensus        86 ~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~  146 (183)
T 3kkq_A           86 YMRTGDGFLIVYSVTDKASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQG  146 (183)
T ss_dssp             HHHHCSEEEEEEETTCHHHHHTHHH-HHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHH
T ss_pred             HHhcCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHH
Confidence            9999999999999999999999988 887776655667889999999999987666654443

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.96  E-value=3.3e-29  Score=171.78  Aligned_cols=134  Identities=44%  Similarity=0.860  Sum_probs=107.8

Q ss_pred             cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 031704            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (154)
Q Consensus         7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (154)
                      ++..+..+||+++|.+|+|||||++++.++.+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus        23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~  102 (201)
T 2hup_A           23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA  102 (201)
T ss_dssp             ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred             ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence            45567889999999999999999999999988 55667777778778888888889999999999999999999999999


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      |++++|||++++.+++.+.. |...+... ...+.|++||+||+|+.+++++..++.
T Consensus       103 d~iilv~D~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~  157 (201)
T 2hup_A          103 NGAILAYDITKRSSFLSVPH-WIEDVRKY-AGSNIVQLLIGNKSDLSELREVSLAEA  157 (201)
T ss_dssp             SEEEEEEETTBHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECCccccccccCHHHH
Confidence            99999999999999999887 88888776 356789999999999987655544333

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.96  E-value=8.1e-29  Score=165.93  Aligned_cols=134  Identities=46%  Similarity=0.830  Sum_probs=114.1

Q ss_pred             cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 031704            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (154)
Q Consensus         7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (154)
                      ....+..+||+++|.+|+|||||++++.++.+ ..+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+
T Consensus         9 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   88 (179)
T 1z0f_A            9 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA   88 (179)
T ss_dssp             --CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTC
T ss_pred             ccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccC
Confidence            34566789999999999999999999999987 55667777788888888899999999999999999999999999999


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      |++++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+.+++++..++.
T Consensus        89 d~~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~  143 (179)
T 1z0f_A           89 AGALMVYDITRRSTYNHLSS-WLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEA  143 (179)
T ss_dssp             SEEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHH
T ss_pred             CEEEEEEeCcCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECcccccccccCHHHH
Confidence            99999999999999998887 88877766 446789999999999976655544333

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.96  E-value=1e-28  Score=167.43  Aligned_cols=132  Identities=37%  Similarity=0.697  Sum_probs=113.0

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc-ccccccccCcc
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR-TLTSSYYRGAQ   86 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~   86 (154)
                      .....+||+++|.+|+|||||+++++++.+ ....++.+.++....+.+++..+.+.+|||||++.+. ..+..+++++|
T Consensus        16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d   95 (189)
T 1z06_A           16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH   95 (189)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence            445679999999999999999999999888 5566777778888888889989999999999999888 78888899999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG  141 (154)
Q Consensus        87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~  141 (154)
                      ++++|+|++++.+++.+.. |...+.......+.|+++|+||+|+.+++++..++
T Consensus        96 ~iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~  149 (189)
T 1z06_A           96 AVVFVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDL  149 (189)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHH
T ss_pred             EEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceeCHHH
Confidence            9999999999999999888 88888777556788999999999997665554433

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.96  E-value=3.5e-28  Score=164.86  Aligned_cols=131  Identities=44%  Similarity=0.839  Sum_probs=114.1

Q ss_pred             cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 031704            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (154)
Q Consensus         7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (154)
                      +...+..+||+++|.+|+|||||++++.++.+ ....++.+.++....+..++..+.+.+|||||++.+...+..+++.+
T Consensus        16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   95 (189)
T 2gf9_A           16 PRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGA   95 (189)
T ss_dssp             CTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTC
T ss_pred             CcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCC
Confidence            44566789999999999999999999999988 56677778788878888888899999999999999999999999999


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      |++++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+.+++.+..
T Consensus        96 d~ii~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~  147 (189)
T 2gf9_A           96 MGFLLMYDIANQESFAAVQD-WATQIKTY-SWDNAQVILVGNKCDLEDERVVPA  147 (189)
T ss_dssp             SEEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCH
T ss_pred             CEEEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECcccccccCCCH
Confidence            99999999999999999888 88888776 356789999999999976655433

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.96  E-value=3.6e-28  Score=163.46  Aligned_cols=130  Identities=27%  Similarity=0.386  Sum_probs=109.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      ...+||+++|.+|+|||||++++.++.+ ..+.++.+.++ ...+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            4679999999999999999999998887 55667777666 677788999999999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      +|||++++.+++.+.. |...+.......+.|+++|+||+|+.+++.+..++.
T Consensus        83 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  134 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEG  134 (181)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHH
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhcceecHHHH
Confidence            9999999999999988 887776665667889999999999987766644443

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.96  E-value=3.4e-28  Score=165.36  Aligned_cols=130  Identities=62%  Similarity=1.021  Sum_probs=115.1

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   86 (154)
                      +..+..+||+++|++|+|||||+++++++.+ ..+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|
T Consensus        11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   90 (196)
T 3tkl_A           11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH   90 (196)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence            4456789999999999999999999999988 566788888888888889999999999999999999999999999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      ++++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+.+++.+..
T Consensus        91 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~~~~  141 (196)
T 3tkl_A           91 GIIVVYDVTDQESFNNVKQ-WLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDY  141 (196)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCH
T ss_pred             EEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECcccccccccCH
Confidence            9999999999999999988 88888776 456789999999999987765543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=1.5e-28  Score=168.66  Aligned_cols=132  Identities=47%  Similarity=0.871  Sum_probs=114.4

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   86 (154)
                      ...++.+||+++|.+|+|||||++++.++.+ ....++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus        21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (201)
T 2ew1_A           21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN  100 (201)
T ss_dssp             -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence            4456789999999999999999999999988 566778888888888889999999999999999999999999999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG  141 (154)
Q Consensus        87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~  141 (154)
                      ++++|||++++.+++.+.. |...+... ...+.|+++|+||+|+.+++++...+
T Consensus       101 ~~i~v~D~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~  153 (201)
T 2ew1_A          101 ALILTYDITCEESFRCLPE-WLREIEQY-ASNKVITVLVGNKIDLAERREVSQQR  153 (201)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHH
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECCCCccccccCHHH
Confidence            9999999999999999887 88888776 45678999999999997665554433

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.96  E-value=5e-28  Score=162.56  Aligned_cols=132  Identities=38%  Similarity=0.643  Sum_probs=112.8

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (154)
                      .....+||+++|++|+|||||++++++..+ ....++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus         8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   87 (181)
T 2efe_B            8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   87 (181)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred             CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence            445679999999999999999999999988 4556777778888888888889999999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      +++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+.+++++..++.
T Consensus        88 ~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~p~i~v~nK~Dl~~~~~~~~~~~  140 (181)
T 2efe_B           88 AIIVFDVTNQASFERAKK-WVQELQAQ-GNPNMVMALAGNKSDLLDARKVTAEDA  140 (181)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHH
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECCcccccccCCHHHH
Confidence            999999999999998887 88877776 446789999999999987665544443

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.96  E-value=3e-28  Score=165.52  Aligned_cols=133  Identities=46%  Similarity=0.803  Sum_probs=111.6

Q ss_pred             cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 031704            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (154)
Q Consensus         7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (154)
                      .......+||+++|.+|+|||||++++.++.+ ....++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus        15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   94 (191)
T 2a5j_A           15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA   94 (191)
T ss_dssp             CCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccC
Confidence            34567889999999999999999999999988 45567777778888888899999999999999999999999999999


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG  141 (154)
Q Consensus        86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~  141 (154)
                      |++++|+|+++..+++.+.. |...+... ...+.|+++|+||+|+...+++..++
T Consensus        95 d~ii~v~d~~~~~s~~~~~~-~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~  148 (191)
T 2a5j_A           95 AGALLVYDITRRETFNHLTS-WLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREE  148 (191)
T ss_dssp             SEEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHH
T ss_pred             CEEEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECcccCCccccCHHH
Confidence            99999999999999999888 88887765 45678999999999997655554433

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.96  E-value=4.4e-28  Score=162.62  Aligned_cols=129  Identities=55%  Similarity=0.923  Sum_probs=111.4

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (154)
                      ..+..+||+++|++|+|||||++++.++.+ ....++.+.++....+..++..+.+.+|||||++.+...+..+++.+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   84 (181)
T 3tw8_B            5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG   84 (181)
T ss_dssp             -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence            456789999999999999999999999887 5667788888888888899999999999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhh
Q 031704           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLS  140 (154)
Q Consensus        88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~  140 (154)
                      +++|+|++++.+++.+.. |...+...  ..+.|+++|+||+|+...+.+...
T Consensus        85 ~i~v~d~~~~~s~~~~~~-~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~  134 (181)
T 3tw8_B           85 VIVVYDVTSAESFVNVKR-WLHEINQN--CDDVCRILVGNKNDDPERKVVETE  134 (181)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHH--CTTSEEEEEEECTTCGGGCCSCHH
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECCCCchhcccCHH
Confidence            999999999999999887 88887765  357899999999999766655433

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.96  E-value=8e-29  Score=168.61  Aligned_cols=133  Identities=50%  Similarity=0.884  Sum_probs=109.3

Q ss_pred             cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 031704            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (154)
Q Consensus         7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (154)
                      +++.+..+||+++|.+|+|||||+++|.++.+ ....++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus        20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   99 (192)
T 2il1_A           20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA   99 (192)
T ss_dssp             --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred             CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence            45567889999999999999999999999887 55677888888888888899999999999999999999999999999


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG  141 (154)
Q Consensus        86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~  141 (154)
                      |++++|+|+++..+++.+.. |.+.+... ...+.|+++|+||+|+.+++++..++
T Consensus       100 d~iilV~D~~~~~s~~~~~~-~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~  153 (192)
T 2il1_A          100 KGIILVYDITKKETFDDLPK-WMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQ  153 (192)
T ss_dssp             SEEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHH
T ss_pred             CEEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECcccccccccCHHH
Confidence            99999999999999999887 88887766 45678999999999997666554433

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.96  E-value=2.1e-28  Score=163.43  Aligned_cols=129  Identities=23%  Similarity=0.393  Sum_probs=99.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc--ccccccccccCccEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER--FRTLTSSYYRGAQGII   89 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~~~~v   89 (154)
                      ..+||+++|++|+|||||++++.+..+....++.+.+.....+.+++..+.+.+|||||++.  +......+++.+|+++
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i   82 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYV   82 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEE
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEE
Confidence            56899999999999999999999998866667777777778888899999999999999887  5556677788999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG  141 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~  141 (154)
                      +|||++++.+++.+.. |...+.......+.|+++|+||+|+.+.+++..++
T Consensus        83 ~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~  133 (175)
T 2nzj_A           83 IVYSIADRGSFESASE-LRIQLRRTHQADHVPIILVGNKADLARCREVSVEE  133 (175)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHCC----CCEEEEEECTTCTTTCCSCHHH
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHHhhccCCCCEEEEEEChhhccccccCHHH
Confidence            9999999999999887 87777665345578999999999998766654443

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.96  E-value=3.4e-28  Score=164.13  Aligned_cols=132  Identities=45%  Similarity=0.833  Sum_probs=113.8

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (154)
                      ..++.+||+++|++|+|||||+++++++.+ ....++.+.++....+..++..+.+.+|||||++.+...+..+++.+|+
T Consensus         6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   85 (186)
T 2bme_A            6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG   85 (186)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence            346789999999999999999999999988 5666777878888888889988999999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      +++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+..++.+...+.
T Consensus        86 ~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~  138 (186)
T 2bme_A           86 ALLVYDITSRETYNALTN-WLTDARML-ASQNIVIILCGNKKDLDADREVTFLEA  138 (186)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHH
T ss_pred             EEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECcccccccccCHHHH
Confidence            999999999999999887 88777765 446789999999999976655544333

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.9e-28  Score=170.44  Aligned_cols=140  Identities=41%  Similarity=0.738  Sum_probs=107.9

Q ss_pred             CCCCcccCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccc
Q 031704            1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTS   79 (154)
Q Consensus         1 m~~~~~~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   79 (154)
                      |.+.......+..+||+++|++|+|||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+.
T Consensus         1 Ms~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   80 (223)
T 3cpj_B            1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITS   80 (223)
T ss_dssp             ---------CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCG
T ss_pred             CCccccCCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHH
Confidence            44444455567889999999999999999999999988 45667778788888888899899999999999999999999


Q ss_pred             ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        80 ~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      .+++.+|++++|||++++.+++.+.. |+..+... ...+.|++||+||+|+..++++...+.
T Consensus        81 ~~~~~~d~vilV~D~~~~~s~~~~~~-~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~  141 (223)
T 3cpj_B           81 AYYRGAVGALIVYDISKSSSYENCNH-WLSELREN-ADDNVAVGLIGNKSDLAHLRAVPTEES  141 (223)
T ss_dssp             GGTTTCCEEEEEEC-CCHHHHHHHHH-HHHHHHHH-CC--CEEEEEECCGGGGGGCCSCHHHH
T ss_pred             HHhccCCEEEEEEeCCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECcccccccccCHHHH
Confidence            99999999999999999999999887 88888766 356789999999999976655544333

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.96  E-value=6.1e-28  Score=165.23  Aligned_cols=129  Identities=44%  Similarity=0.864  Sum_probs=112.8

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (154)
                      ..+..+||+++|.+|+|||||+++|++..+ ..+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (203)
T 1zbd_A            4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG   83 (203)
T ss_dssp             SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence            345779999999999999999999999988 5667777888888888888999999999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      +++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+.+++.+..
T Consensus        84 ii~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~  133 (203)
T 1zbd_A           84 FILMYDITNEESFNAVQD-WSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSS  133 (203)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCH
T ss_pred             EEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECcccCcccccCH
Confidence            999999999999998888 88888765 346789999999999987655543

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.96  E-value=1.3e-28  Score=165.93  Aligned_cols=130  Identities=51%  Similarity=0.944  Sum_probs=88.4

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      .+..+||+++|++|+|||||++++.++.+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   84 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence            45789999999999999999999998887 45567777778777888899999999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG  141 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~  141 (154)
                      ++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+.+++.+..++
T Consensus        85 i~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~  135 (183)
T 2fu5_C           85 MLVYDITNEKSFDNIRN-WIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKER  135 (183)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHH
Confidence            99999999999999888 88887765 34578999999999998766554433

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=8.3e-28  Score=161.35  Aligned_cols=130  Identities=43%  Similarity=0.808  Sum_probs=105.2

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   86 (154)
                      ..+..+||+++|.+|+|||||++++.++.+.  .+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   85 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   85 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence            4467899999999999999999999998883  55677777887777788999999999999999999999999999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhh
Q 031704           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLS  140 (154)
Q Consensus        87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~  140 (154)
                      ++++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+.+++.+...
T Consensus        86 ~ii~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~  137 (180)
T 2g6b_A           86 ALLLLYDVTNKASFDNIQA-WLTEIHEY-AQHDVALMLLGNKVDSAHERVVKRE  137 (180)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECCSTTSCCCSCHH
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEECcccCcccccCHH
Confidence            9999999999999999887 88887776 3467899999999999876655443

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.96  E-value=1e-27  Score=164.57  Aligned_cols=130  Identities=60%  Similarity=0.979  Sum_probs=114.3

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      .+..+||+++|++|+|||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v   84 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   84 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence            45779999999999999999999999988 56678888888888888999999999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG  141 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~  141 (154)
                      ++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+.+++.+..++
T Consensus        85 ilv~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~  135 (206)
T 2bcg_Y           85 IIVYDVTDQESFNGVKM-WLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDV  135 (206)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECCCCccccccCHHH
Confidence            99999999999999888 88888776 35578999999999998766554433

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.96  E-value=4.4e-28  Score=160.97  Aligned_cols=130  Identities=40%  Similarity=0.678  Sum_probs=111.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      ...+||+++|.+|+|||||+++++++.+ ....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            4679999999999999999999999887 455677787887888888888999999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      +|+|++++.+++.+.. |...+... ...+.|+++|+||+|+.+++.+...+.
T Consensus        84 ~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~  134 (170)
T 1r2q_A           84 VVYDITNEESFARAKN-WVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEA  134 (170)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHH
T ss_pred             EEEECCCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECccCccccccCHHHH
Confidence            9999999999998887 88777765 346789999999999976655544333

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.96  E-value=3.4e-28  Score=165.28  Aligned_cols=132  Identities=41%  Similarity=0.764  Sum_probs=113.6

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   86 (154)
                      +..+..+||+++|.+|+|||||+++|.+..+ ....++.+.++....+.+++..+.+.+|||||.+.+...+..+++.+|
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   99 (193)
T 2oil_A           20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV   99 (193)
T ss_dssp             CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence            4566789999999999999999999999988 455677788888888888889999999999999999999999999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG  141 (154)
Q Consensus        87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~  141 (154)
                      ++++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+...+.+...+
T Consensus       100 ~vi~v~D~~~~~s~~~~~~-~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~  152 (193)
T 2oil_A          100 GALLVFDLTKHQTYAVVER-WLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEE  152 (193)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHH
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCeEEEEEECCCcccccccCHHH
Confidence            9999999999999998887 88777765 34678999999999997665544333

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=4.1e-28  Score=165.01  Aligned_cols=133  Identities=39%  Similarity=0.676  Sum_probs=113.9

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   86 (154)
                      +...+.+||+++|.+|+|||||+++++++.+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus        18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   97 (192)
T 2fg5_A           18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA   97 (192)
T ss_dssp             ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred             cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence            3456789999999999999999999999987 567788888888888888888999999999999999999999999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      ++++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+.+++++..++.
T Consensus        98 ~iilV~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~v~~~~~  151 (192)
T 2fg5_A           98 AAVIVYDITKQDSFYTLKK-WVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDA  151 (192)
T ss_dssp             EEEEEEETTCTHHHHHHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHH
T ss_pred             EEEEEEeCCCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEECcccccccccCHHHH
Confidence            9999999999999999877 88888776 456789999999999976555544333

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.96  E-value=1.1e-27  Score=159.20  Aligned_cols=128  Identities=38%  Similarity=0.699  Sum_probs=112.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      .+.+||+++|++|+|||||++++.+..+ ..+.++.+.++......+.+..+.+.+|||||.+.+...+..+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            4679999999999999999999999987 566788888888888888999999999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhh
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLS  140 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~  140 (154)
                      +|+|++++.+++.+.. |...+... .....|+++|+||+|+.+++++..+
T Consensus        84 ~v~d~~~~~s~~~~~~-~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~  132 (170)
T 1z0j_A           84 IVYDITKEETFSTLKN-WVRELRQH-GPPSIVVAIAGNKCDLTDVREVMER  132 (170)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEECCccccccccCHH
Confidence            9999999999998877 88888775 4567899999999999876555333

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=7.7e-28  Score=159.80  Aligned_cols=121  Identities=44%  Similarity=0.786  Sum_probs=108.1

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      +.+||+++|++|+|||||+++++++.+ ....++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            358999999999999999999999987 5667888888888888889999999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      |+|++++.+++.+.. |...+... ...+.|+++|+||+|+..+
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piilv~nK~Dl~~~  123 (170)
T 1ek0_A           82 VYDVTKPQSFIKARH-WVKELHEQ-ASKDIIIALVGNKIDXLQE  123 (170)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGS
T ss_pred             EEecCChHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECCCcccc
Confidence            999999999999888 88777765 3567899999999999755

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.96  E-value=1.3e-27  Score=159.94  Aligned_cols=122  Identities=39%  Similarity=0.771  Sum_probs=105.0

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      ....+||+++|++|+|||||+++++++.+ ....++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            45679999999999999999999999887 56677888888888888899999999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcC---CCCCcEEEEEeCCCCC
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYST---NQDCIKLLVGNKVDKV  132 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~ivv~nK~Dl~  132 (154)
                      ++|+|+++..+++.+.. |...+.....   ..+.|+++|+||+|+.
T Consensus        84 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~  129 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKIDIS  129 (177)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHHccccccCCCcEEEEEECCccc
Confidence            99999999999998877 8877766532   2678999999999997

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.96  E-value=3.9e-28  Score=161.44  Aligned_cols=130  Identities=38%  Similarity=0.746  Sum_probs=105.0

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      .+..+||+++|++|+|||||++++.++.+ ....++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            35679999999999999999999999888 55667778778778888888899999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG  141 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~  141 (154)
                      ++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+.+++++..++
T Consensus        83 i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~  133 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKN-WVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQE  133 (170)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCeEEEEEECcccccccccCHHH
Confidence            99999999999999887 88777665 33578999999999997765554433

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.96  E-value=5.9e-28  Score=161.99  Aligned_cols=131  Identities=31%  Similarity=0.498  Sum_probs=109.0

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      ....+||+++|.+|+|||||++++++..+ ..+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   84 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   84 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence            34679999999999999999999999987 455566665554 6677888889999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      ++|||++++.+++.+.. |...+.......+.|+++|+||+|+.+.+++...+.
T Consensus        85 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~  137 (181)
T 2fn4_A           85 LLVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEA  137 (181)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHH
T ss_pred             EEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCHHHH
Confidence            99999999999999888 777664443566789999999999987665544333

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.96  E-value=1.2e-27  Score=162.04  Aligned_cols=130  Identities=35%  Similarity=0.717  Sum_probs=110.5

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeE-EEEEEECCe---------EEEEEEEeCCCccccccc
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFK-IKHVALGGK---------KMKLAIWDTAGQERFRTL   77 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~g~~~~~~~   77 (154)
                      ..+..+||+++|++|+|||||++++.++.+ ....++.+.++. ...+..++.         .+.+.+|||||++.+...
T Consensus         7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   86 (195)
T 3bc1_A            7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL   86 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred             ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence            456789999999999999999999999887 556677777666 556666655         789999999999999999


Q ss_pred             ccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704           78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        78 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      +..+++.+|++++|+|++++.+++.+.. |...+.......+.|+++|+||+|+.+++.+..
T Consensus        87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~  147 (195)
T 3bc1_A           87 TTAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQMHAYSENPDIVLCGNKSDLEDQRAVKE  147 (195)
T ss_dssp             HHHTTTTCSEEEEEEETTCHHHHHTHHH-HHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCH
T ss_pred             HHHHHcCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCH
Confidence            9999999999999999999999999887 888887764557889999999999976555443

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.96  E-value=7.5e-28  Score=164.81  Aligned_cols=131  Identities=27%  Similarity=0.414  Sum_probs=103.2

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (154)
                      +....+||+++|.+|+|||||+++|.++.+ ..+.++.+..+ ......++..+.+.+|||||++.+...+..+++.+|+
T Consensus        20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   98 (201)
T 3oes_A           20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG   98 (201)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred             CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence            345789999999999999999999999988 45556666555 5566667778899999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG  141 (154)
Q Consensus        88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~  141 (154)
                      +++|||++++.+++.+.. |...+.......+.|+++|+||+|+..++.+...+
T Consensus        99 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~  151 (201)
T 3oes_A           99 YVLVYSVTSLHSFQVIES-LYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVE  151 (201)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHC-----CCCEEEEEECTTCGGGCCSCHHH
T ss_pred             EEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccCccccccCHHH
Confidence            999999999999999987 88887766556688999999999998766654433

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.96  E-value=7.4e-28  Score=161.22  Aligned_cols=129  Identities=36%  Similarity=0.651  Sum_probs=111.0

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      ....+||+++|++|+|||||+++++++.+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   90 (179)
T 2y8e_A           11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA   90 (179)
T ss_dssp             -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            34669999999999999999999999888 55667777788888888899999999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhh
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLS  140 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~  140 (154)
                      ++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+.+++++...
T Consensus        91 i~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~  140 (179)
T 2y8e_A           91 VVVYDITNTNSFHQTSK-WIDDVRTE-RGSDVIIMLVGNKTDLSDKRQVSTE  140 (179)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHH-HTTSSEEEEEEECGGGGGGCCSCHH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECCcccccCcCCHH
Confidence            99999999999998887 87777665 3467899999999999766655433

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=2.5e-27  Score=160.84  Aligned_cols=124  Identities=64%  Similarity=1.068  Sum_probs=110.5

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (154)
                      .....+||+++|++|+|||||++++.+..+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus        11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   90 (195)
T 1x3s_A           11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG   90 (195)
T ss_dssp             TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence            345679999999999999999999999988 5667788888888888889999999999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      +++|+|++++.+++.+.. |...+.......+.|+++|+||+|+..
T Consensus        91 ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilv~nK~Dl~~  135 (195)
T 1x3s_A           91 VILVYDVTRRDTFVKLDN-WLNELETYCTRNDIVNMLVGNKIDKEN  135 (195)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred             EEEEEECcCHHHHHHHHH-HHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence            999999999999999887 888887765556789999999999953

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.96  E-value=6.7e-28  Score=159.77  Aligned_cols=128  Identities=34%  Similarity=0.518  Sum_probs=106.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      .+||+++|.+|+|||||++++.++.+ ..+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            58999999999999999999999887 45556666444 35566788889999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      ||++++.+++.+.. |...+.......+.|+++|+||+|+.+++.+..++.
T Consensus        82 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~  131 (167)
T 1c1y_A           82 YSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG  131 (167)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHH
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhhCcCCCcEEEEEECccccccccCCHHHH
Confidence            99999999999888 777776654566889999999999987665544333

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.96  E-value=1.1e-27  Score=164.01  Aligned_cols=140  Identities=33%  Similarity=0.551  Sum_probs=110.3

Q ss_pred             CCCCcc-cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccc
Q 031704            1 MASSTS-QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLT   78 (154)
Q Consensus         1 m~~~~~-~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   78 (154)
                      |+...+ ..+....+||+++|.+|+|||||++++.++.+ ..+.++.+..+ ...+.+++..+.+.+|||||++.+...+
T Consensus         1 m~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   79 (206)
T 2bov_A            1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIR   79 (206)
T ss_dssp             ----------CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHH
T ss_pred             CCcccccCCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHH
Confidence            444433 34556789999999999999999999999887 44455555444 4567788888999999999999999999


Q ss_pred             cccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        79 ~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      ..+++.+|++++|||+++..+++.+.. |...+.......+.|+++|+||+|+.+++++..++.
T Consensus        80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~  142 (206)
T 2bov_A           80 DNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA  142 (206)
T ss_dssp             HHHHHHCSEEEEEEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHH
T ss_pred             HHHHhhCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccCccccccccHHHH
Confidence            999999999999999999999999887 888887765556889999999999987665544443

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.96  E-value=1e-27  Score=159.03  Aligned_cols=126  Identities=32%  Similarity=0.638  Sum_probs=109.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      +..+||+++|++|+|||||++++.++.+ ..+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            4579999999999999999999999888 566777777888888888888999999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      +|+|++++.+++.+.. |...+....  .+.|+++|+||+|+.+++++..
T Consensus        83 ~v~d~~~~~s~~~~~~-~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~  129 (168)
T 1z2a_A           83 LVFSTTDRESFEAISS-WREKVVAEV--GDIPTALVQNKIDLLDDSCIKN  129 (168)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHH--CSCCEEEEEECGGGGGGCSSCH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECcccCcccccCH
Confidence            9999999999999888 887776653  6789999999999976555433

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.96  E-value=5.3e-28  Score=165.13  Aligned_cols=134  Identities=25%  Similarity=0.326  Sum_probs=106.5

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc-cccccccCc
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT-LTSSYYRGA   85 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~   85 (154)
                      ......+||+++|.+|+|||||+++|.+... ....++.+.+.....+.+++..+.+.+|||+|++.+.. +...+++.+
T Consensus        18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~   97 (195)
T 3cbq_A           18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG   97 (195)
T ss_dssp             ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred             CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence            4456779999999999999999999976544 23345555566667778899999999999999987665 667778899


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      |++++|||++++.+++.+.. |...+.......+.|+++|+||+|+.+++.+..++.
T Consensus        98 d~~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~  153 (195)
T 3cbq_A           98 DAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEG  153 (195)
T ss_dssp             SEEEEEEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHH
Confidence            99999999999999999988 888777664446789999999999987666654444

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.95  E-value=6.5e-28  Score=165.13  Aligned_cols=132  Identities=45%  Similarity=0.783  Sum_probs=104.7

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   86 (154)
                      ...+..+||+++|.+|+|||||+++++++.+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d   99 (200)
T 2o52_A           20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA   99 (200)
T ss_dssp             --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence            3456789999999999999999999999888 556677777788888888998999999999999999999999999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG  141 (154)
Q Consensus        87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~  141 (154)
                      ++++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+..++.+...+
T Consensus       100 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~  152 (200)
T 2o52_A          100 GALLVYDITSRETYNSLAA-WLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLE  152 (200)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHH-TCTTCEEEEEEECGGGGGGCCSCHHH
T ss_pred             EEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECCCcccccccCHHH
Confidence            9999999999999999887 88777765 34678999999999997665554333

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.95  E-value=1.1e-27  Score=158.73  Aligned_cols=128  Identities=24%  Similarity=0.355  Sum_probs=86.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      .+||+++|++|+|||||++++.+.......++.+.++ ...+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   80 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence            4799999999999999999999877755556666555 456678899999999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      |++++.+++.+.. |...+.......+.|+++|+||+|+.+++.+...+.
T Consensus        81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  129 (166)
T 3q72_A           81 SVTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEG  129 (166)
T ss_dssp             ETTCHHHHHHHHH-HHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHH
T ss_pred             ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccccccccccCHHHH
Confidence            9999999999988 777776654567889999999999987766644433

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.95  E-value=1.3e-27  Score=165.35  Aligned_cols=125  Identities=25%  Similarity=0.479  Sum_probs=102.5

Q ss_pred             cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 031704            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (154)
Q Consensus         7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (154)
                      +......+||+++|.+|+|||||+++|+++.+ ..+.++.+.++ ...+.+++..+.+.+|||+|++.+..++..+++++
T Consensus        21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   99 (214)
T 3q3j_B           21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS   99 (214)
T ss_dssp             ------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred             CCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCC
Confidence            34455779999999999999999999999988 55567777665 45566778889999999999999999999999999


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      |++++|||++++.+++.+...|...+...  ..+.|+++|+||+|+.++
T Consensus       100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~  146 (214)
T 3q3j_B          100 DAVLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTD  146 (214)
T ss_dssp             SEEEEEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGC
T ss_pred             eEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccc
Confidence            99999999999999998544499888876  357899999999999753

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.95  E-value=1.7e-27  Score=158.19  Aligned_cols=119  Identities=59%  Similarity=0.976  Sum_probs=100.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      ..+||+++|++|+|||||++++.++.+ ....++.+.++....+..++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            468999999999999999999999988 5666777777877888888888999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                      |+|++++.+++.+.. |...+... ...+.|+++|+||+|+.
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~  121 (170)
T 1g16_A           82 VYDITDERTFTNIKQ-WFKTVNEH-ANDEAQLLLVGNKSDME  121 (170)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCT
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECccCC
Confidence            999999999998887 88877765 34578999999999994

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.95  E-value=4.5e-27  Score=158.78  Aligned_cols=123  Identities=28%  Similarity=0.496  Sum_probs=102.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      ...+||+++|++|+|||||++++.++.+....+.+..+.....+..++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            46799999999999999999999998884433333345555677788999999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      |||++++.+++.+.. |...+.......+.|+++|+||+|+...
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~~~  124 (189)
T 4dsu_A           82 VFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLPSR  124 (189)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTSSSC
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccCccc
Confidence            999999999999888 8877777656678999999999999743

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.95  E-value=1.5e-27  Score=157.84  Aligned_cols=127  Identities=33%  Similarity=0.552  Sum_probs=105.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      .+||+++|++|+|||||++++.++.+ ..+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc-eeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            48999999999999999999999887 34445544 33456677888899999999999999998888899999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG  141 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~  141 (154)
                      +|++++.+++.+.. |...+.......+.|+++|+||+|+.+++++...+
T Consensus        82 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~  130 (167)
T 1kao_A           82 YSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSE  130 (167)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHH
T ss_pred             EeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcccccccCCHHH
Confidence            99999999999888 77666665455688999999999997665554333

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.95  E-value=4.3e-27  Score=160.05  Aligned_cols=124  Identities=30%  Similarity=0.551  Sum_probs=105.9

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   86 (154)
                      ......+||+++|.+|+|||||++++.++.+ ..+.++.+.++. ..+..++..+.+.+|||||++.+...+..+++++|
T Consensus        18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   96 (194)
T 3reg_A           18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSD   96 (194)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence            4556789999999999999999999999988 455677766554 45678889999999999999999999999999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      ++++|||++++.+++.+...|...+...  ..+.|+++|+||+|+.++
T Consensus        97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~  142 (194)
T 3reg_A           97 VVLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKD  142 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCT
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccC
Confidence            9999999999999999866588888765  457899999999999754

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.95  E-value=1.3e-27  Score=162.05  Aligned_cols=131  Identities=23%  Similarity=0.369  Sum_probs=103.6

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (154)
                      .....+||+++|.+|+|||||+++++++.+ ..+.++.+..+ .....+++..+.+.+|||+|++.+... ..+++.+|+
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~   94 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA   94 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence            445779999999999999999999999987 55567776655 455677889999999999999988775 568899999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhcC--CCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           88 IIMVYDVTRRDTFTNLADIWAKEIDLYST--NQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      +++|||++++++++.+.. |...+.....  ..+.|+++|+||+|+.+++++..++.
T Consensus        95 ~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~  150 (187)
T 3c5c_A           95 FLVVYSVDSRQSFDSSSS-YLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEG  150 (187)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHH
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHH
Confidence            999999999999999887 8877776522  25789999999999976666544433

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=8.4e-29  Score=168.24  Aligned_cols=132  Identities=47%  Similarity=0.865  Sum_probs=114.6

Q ss_pred             cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 031704            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (154)
Q Consensus         7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (154)
                      +...+..+||+++|.+|+|||||+++|.++.+ ....++.+.++....+..++..+.+.+|||||++.+...+..+++.+
T Consensus        17 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   96 (191)
T 3dz8_A           17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGA   96 (191)
T ss_dssp             TTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred             ccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccC
Confidence            44566889999999999999999999999887 55567777778888888888889999999999999999999999999


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhh
Q 031704           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLS  140 (154)
Q Consensus        86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~  140 (154)
                      |++++|||++++.+++.+.. |...+... ...+.|+++|+||+|+..++.+...
T Consensus        97 d~~i~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~  149 (191)
T 3dz8_A           97 MGFILMYDITNEESFNAVQD-WATQIKTY-SWDNAQVILVGNKCDMEEERVVPTE  149 (191)
T ss_dssp             CEEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHH
T ss_pred             CEEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECCCCccccccCHH
Confidence            99999999999999999988 88888776 4567899999999999766555443

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.95  E-value=2e-28  Score=167.38  Aligned_cols=129  Identities=63%  Similarity=1.029  Sum_probs=107.0

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (154)
                      ..+..+||+++|.+|+|||||+++|.+..+ ....++.+.++....+..++..+.+.+|||||++.+...+..+++++|+
T Consensus        29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~  108 (199)
T 3l0i_B           29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG  108 (199)
T ss_dssp             CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence            446789999999999999999999999887 4556777778888888899999999999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      +++|||++++.+++.+.. |...+... ...+.|+++|+||+|+.+++.+..
T Consensus       109 ~i~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~  158 (199)
T 3l0i_B          109 IIVVYDVTDQESFNNVKQ-WLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDY  158 (199)
T ss_dssp             EEECC-CCCSHHHHHHHH-HHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCS
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHh-ccCCCCEEEEEECccCCccccCCH
Confidence            999999999999999988 88888665 445789999999999987665543

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.95  E-value=5.7e-27  Score=161.31  Aligned_cols=123  Identities=58%  Similarity=0.973  Sum_probs=106.1

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   86 (154)
                      ......+||+++|++|+|||||++++++..+ ....++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus        15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   94 (213)
T 3cph_A           15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM   94 (213)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence            4456679999999999999999999999887 566778887888888888998999999999999999999999999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                      ++++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+.
T Consensus        95 ~ii~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~  138 (213)
T 3cph_A           95 GIILVYDVTDERTFTNIKQ-WFKTVNEH-ANDEAQLLLVGNKSDME  138 (213)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHH-TTTCSEEEEEEECTTCS
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECCCCc
Confidence            9999999999999998887 88777765 34578999999999994

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.95  E-value=9.8e-28  Score=164.00  Aligned_cols=123  Identities=40%  Similarity=0.774  Sum_probs=97.4

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   86 (154)
                      ......+||+++|++|+|||||+++++++.+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus        23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  102 (199)
T 2p5s_A           23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD  102 (199)
T ss_dssp             -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred             cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence            3455679999999999999999999999987 566777787888888889999999999999999999998999999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                      ++++|||++++.+++.+.. |.+.+... ...+.|+++|+||+|+.
T Consensus       103 ~iilv~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~NK~Dl~  146 (199)
T 2p5s_A          103 GVLLLYDVTCEKSFLNIRE-WVDMIEDA-AHETVPIMLVGNKADIR  146 (199)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHH-C---CCEEEEEECGGGH
T ss_pred             EEEEEEECCChHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECcccc
Confidence            9999999999999999887 88887765 44578999999999996

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.95  E-value=3.2e-27  Score=156.98  Aligned_cols=129  Identities=24%  Similarity=0.319  Sum_probs=96.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc-cccccccCccEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT-LTSSYYRGAQGIIM   90 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~v~   90 (154)
                      .+||+++|++|+|||||++++.+... ....++.+.+.....+.+++..+.+.+||+||++.+.. ....+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            58999999999999999999997766 34444555667777788899999999999999988876 66677889999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      |||++++++++.+.. |...+.......+.|+++|+||+|+.+++.+..++.
T Consensus        82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  132 (169)
T 3q85_A           82 VFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEG  132 (169)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHH
T ss_pred             EEECCChHHHHHHHH-HHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHH
Confidence            999999999999988 777777664556889999999999986666554443

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.95  E-value=6.6e-27  Score=160.34  Aligned_cols=123  Identities=37%  Similarity=0.722  Sum_probs=106.2

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      ....+||+++|.+|+|||||++++++..+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            34679999999999999999999999987 56677777788888888888889999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCC---CCCcEEEEEeCCCCCC
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTN---QDCIKLLVGNKVDKVC  133 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~ivv~nK~Dl~~  133 (154)
                      ++|+|++++.+++.+.. |...+......   .+.|+++|+||+|+.+
T Consensus        85 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  131 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKIDLEN  131 (207)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHhcccccCCCCcEEEEEECCCCcc
Confidence            99999999999998877 87776654321   4679999999999973

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.95  E-value=4.7e-27  Score=161.66  Aligned_cols=123  Identities=26%  Similarity=0.555  Sum_probs=103.1

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   86 (154)
                      ......+||+++|++|+|||||+++|.+..+ ..+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++++|
T Consensus        23 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  101 (205)
T 1gwn_A           23 PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSD  101 (205)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCC
Confidence            3456779999999999999999999999988 44566666555 345667888899999999999999999999999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      ++++|||++++.+++.+...|...+....  .+.|+++|+||+|+.+
T Consensus       102 ~~ilv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~  146 (205)
T 1gwn_A          102 AVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRT  146 (205)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGG
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhcc
Confidence            99999999999999998544888887652  5789999999999975

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.95  E-value=3.2e-27  Score=156.41  Aligned_cols=129  Identities=33%  Similarity=0.585  Sum_probs=104.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      ..+||+++|.+|+|||||++++.++.+ ..+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            358999999999999999999999887 44445555443 4556788888999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      |+|++++.+++.+.. |...+.......+.|+++|+||+|+.+++++..++.
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~  132 (168)
T 1u8z_A           82 VFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA  132 (168)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHH
T ss_pred             EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccccccCccCHHHH
Confidence            999999999999888 887777765556889999999999977655544333

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.95  E-value=6.1e-27  Score=158.47  Aligned_cols=125  Identities=20%  Similarity=0.317  Sum_probs=102.3

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   86 (154)
                      ......+||+++|.+|+|||||+++++++.+. .+.++ +..+ ...+.+++..+.+.+|||+|++.+.     +++.+|
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~   87 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD   87 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence            45567899999999999999999999999984 34454 4333 4777889999999999999998876     678899


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC--Cchhhhhh
Q 031704           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV--CPWRLFLS  140 (154)
Q Consensus        87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~--~~~~~~~~  140 (154)
                      ++++|||++++.+++.+.. |...+.......+.|+++|+||+|+.  ..+.+..+
T Consensus        88 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~  142 (184)
T 3ihw_A           88 AVVFVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDS  142 (184)
T ss_dssp             EEEEEEETTCHHHHHHHHH-HHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHH
T ss_pred             EEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccccCHH
Confidence            9999999999999999988 98888776444678999999999994  34444433

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.4e-26  Score=157.47  Aligned_cols=123  Identities=31%  Similarity=0.570  Sum_probs=105.2

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (154)
                      .....+||+++|.+|+|||||++++.++.+ ..+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~   92 (194)
T 2atx_A           14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   92 (194)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence            345779999999999999999999999987 45556665554 4556778888999999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +++|||++++.+++.+...|...+...  ..+.|+++|+||+|+.+.
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~  137 (194)
T 2atx_A           93 FLICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDD  137 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccc
Confidence            999999999999999885588888775  347899999999999765

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.95  E-value=2.4e-27  Score=164.49  Aligned_cols=127  Identities=35%  Similarity=0.575  Sum_probs=111.2

Q ss_pred             ccCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 031704            6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG   84 (154)
Q Consensus         6 ~~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   84 (154)
                      .+......+||+++|.+|+|||||+++++.+.+ ..+.++.+.+.....+..++..+.+.+|||||++.+...+..++++
T Consensus         8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   87 (221)
T 3gj0_A            8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ   87 (221)
T ss_dssp             STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred             cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence            344556779999999999999999999877766 5567888888888888889999999999999999999999999999


Q ss_pred             ccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        85 ~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      +|++++|||++++.+++.+.. |...+....  .+.|+++|+||+|+.+..
T Consensus        88 ~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~--~~~p~ilv~nK~Dl~~~~  135 (221)
T 3gj0_A           88 AQCAIIMFDVTSRVTYKNVPN-WHRDLVRVC--ENIPIVLCGNKVDIKDRK  135 (221)
T ss_dssp             CCEEEEEEETTCHHHHHTHHH-HHHHHHHHS--TTCCEEEEEECTTSSSCS
T ss_pred             CCEEEEEEECCCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECCcccccc
Confidence            999999999999999999988 888887762  478999999999997544

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.95  E-value=8.6e-27  Score=157.42  Aligned_cols=121  Identities=26%  Similarity=0.562  Sum_probs=102.9

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      ....+||+++|++|+|||||++++.++.+ ..+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            35679999999999999999999999888 45566666554 34567788889999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      ++|||++++.+++.+...|...+....  .+.|+++|+||+|+.+
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~  125 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRT  125 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGG
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhc
Confidence            999999999999998555888887652  5789999999999975

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.95  E-value=4.7e-27  Score=158.30  Aligned_cols=130  Identities=33%  Similarity=0.569  Sum_probs=107.5

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      ....+||+++|++|+|||||++++.+..+ ..+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   93 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   93 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence            44679999999999999999999999888 44445555443 45567788889999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG  141 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~  141 (154)
                      ++|||++++.+++.+.. |...+.......+.|+++|+||+|+.+++++...+
T Consensus        94 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~  145 (187)
T 2a9k_A           94 LCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEE  145 (187)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHH
T ss_pred             EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccCccCHHH
Confidence            99999999999999888 88777776556688999999999997765554433

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.95  E-value=6.1e-27  Score=157.12  Aligned_cols=124  Identities=36%  Similarity=0.720  Sum_probs=93.4

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (154)
                      ....+||+++|++|+|||||++++.+..+ ..+.++.+.++....+.++ +..+.+.+|||||++.+...+..+++.+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            34679999999999999999999999887 5566777777777777776 567899999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhcC---CCCCcEEEEEeCCCCCCc
Q 031704           88 IIMVYDVTRRDTFTNLADIWAKEIDLYST---NQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~ivv~nK~Dl~~~  134 (154)
                      +++|+|++++.+++.+.. |...+.....   ..+.|+++|+||+|+...
T Consensus        85 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  133 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNKIDAEES  133 (182)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred             EEEEEECCChHHHHHHHH-HHHHHHHHhcccCcCCCcEEEEEECCccccc
Confidence            999999999999999888 8777765532   257899999999999644

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.95  E-value=1.1e-27  Score=165.50  Aligned_cols=132  Identities=38%  Similarity=0.748  Sum_probs=108.5

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCe----------EEEEEEEeCCCcccccc
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK----------KMKLAIWDTAGQERFRT   76 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~g~~~~~~   76 (154)
                      ...++.+||+++|.+|+|||||+++|++..+ ..+.++.+.++....+.+++.          .+.+.+|||||++.+..
T Consensus        20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~   99 (217)
T 2f7s_A           20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS   99 (217)
T ss_dssp             -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred             CCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence            3456789999999999999999999999887 445566666666666666665          78999999999999999


Q ss_pred             cccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhh
Q 031704           77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLS  140 (154)
Q Consensus        77 ~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~  140 (154)
                      .+..+++.+|++++|+|+++..+++.+.. |+..+.......+.|+++|+||+|+.+++.+...
T Consensus       100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~  162 (217)
T 2f7s_A          100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCENPDIVLIGNKADLPDQREVNER  162 (217)
T ss_dssp             HHHHHHTTCCEEEEEEETTCHHHHHHHHH-HHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH
T ss_pred             HHHHHhcCCCEEEEEEECcCHHHHHHHHH-HHHHHHHhcCcCCCCEEEEEECCccccccccCHH
Confidence            99999999999999999999999998887 8777665533367899999999999766555433

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.95  E-value=2.2e-26  Score=157.51  Aligned_cols=122  Identities=32%  Similarity=0.601  Sum_probs=105.0

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      ....+||+++|.+|+|||||++++.++.+ ..+.++.+.++. ..+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  100 (201)
T 2gco_A           22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI  100 (201)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence            45789999999999999999999999888 455566665554 3467788889999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      ++|||++++.+++.+...|...+...  ..+.|+++|+||+|+..+
T Consensus       101 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~  144 (201)
T 2gco_A          101 LMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQD  144 (201)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcC
Confidence            99999999999999865588888765  247899999999999765

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.95  E-value=9.6e-27  Score=159.05  Aligned_cols=123  Identities=28%  Similarity=0.493  Sum_probs=98.3

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (154)
                      .....+||+++|.+|+|||||++++.++.+ ..+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++++|+
T Consensus        16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (201)
T 2q3h_A           16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI   94 (201)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence            456789999999999999999999999887 44556665444 4566778888999999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +++|||++++.+++.+...|...+....  .+.|+++|+||+|+..+
T Consensus        95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~  139 (201)
T 2q3h_A           95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLRED  139 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhc
Confidence            9999999999999998755888887752  47899999999999753

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.95  E-value=1.9e-27  Score=162.98  Aligned_cols=131  Identities=27%  Similarity=0.433  Sum_probs=80.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC--CC-CCCCCcceeeeEEEEEEECCe--EEEEEEEeCCCcccccccccccccCc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSD--TF-EELSPTIGVDFKIKHVALGGK--KMKLAIWDTAGQERFRTLTSSYYRGA   85 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~--~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (154)
                      ...+||+++|.+|+|||||++++.+.  .+ ..+.++.+.++....+.+++.  .+.+.+|||||++.+...+..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            57799999999999999999999998  66 455667766777777888876  88999999999999999999999999


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhcC--CCCCcEEEEEeCCCCCC-chhhhhhhh
Q 031704           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYST--NQDCIKLLVGNKVDKVC-PWRLFLSGF  142 (154)
Q Consensus        86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~Dl~~-~~~~~~~~~  142 (154)
                      |++++|+|++++.+++.+.. |...+.....  ..+.|+++|+||+|+.. .+.+..++.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~  156 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKA-WFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMA  156 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHH-HHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHH
T ss_pred             cEEEEEEECCCHHHHHHHHH-HHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHH
Confidence            99999999999999999887 8888887633  26789999999999987 555544333

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1e-26  Score=160.69  Aligned_cols=132  Identities=23%  Similarity=0.317  Sum_probs=103.3

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-ccccccccccCc
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-FRTLTSSYYRGA   85 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~   85 (154)
                      .....+||+++|.+|+|||||+++|.+...  ....++.+.++....+.+++..+.+.+|||+|.+. +..+...+++.+
T Consensus        33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a  112 (211)
T 2g3y_A           33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG  112 (211)
T ss_dssp             --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence            445679999999999999999999997543  44445666666677788899999999999999876 455566778899


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG  141 (154)
Q Consensus        86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~  141 (154)
                      |++++|||+++..+|+.+.. |...+.......+.|++||+||+||...+.+..++
T Consensus       113 ~~~ilVydvt~~~sf~~~~~-~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e  167 (211)
T 2g3y_A          113 DAYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSE  167 (211)
T ss_dssp             SEEEEEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHH
T ss_pred             CEEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHH
Confidence            99999999999999999888 77766654334578999999999997666554443

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.95  E-value=2.5e-27  Score=158.77  Aligned_cols=129  Identities=33%  Similarity=0.586  Sum_probs=106.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECC-eEEEEEEEeCCCcccccccccccccCccEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGG-KKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      .+.+||+++|++|+|||||++++.++.+ ..+.++.+.++....+.+++ ..+.+.+|||||++.+...+..+++.+|++
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   83 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV   83 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence            4569999999999999999999999887 34456777777777787776 678999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcC-CCCCc-EEEEEeCCCCCCchhhhhh
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCI-KLLVGNKVDKVCPWRLFLS  140 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~-~ivv~nK~Dl~~~~~~~~~  140 (154)
                      ++|+|++++.+++.+.. |...+..... ....| +++|+||+|+.+++.+..+
T Consensus        84 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~  136 (178)
T 2hxs_A           84 LLVYDITNYQSFENLED-WYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPE  136 (178)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHH
T ss_pred             EEEEECCCHHHHHHHHH-HHHHHHHHhcccCCCCeEEEEEEccccccccccCHH
Confidence            99999999999998887 8877766422 12344 8999999999766555433

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.95  E-value=4.2e-26  Score=154.52  Aligned_cols=123  Identities=31%  Similarity=0.519  Sum_probs=93.0

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (154)
                      ++-..+||+++|.+|+|||||++++.++.+. .+.++.+. .....+..++..+.+.+|||||++.+...+..+++.+|+
T Consensus        17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (190)
T 3con_A           17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG   95 (190)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred             cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccce-EEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence            3446799999999999999999999998873 34444443 334567778888999999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      +++|+|+++..+++.+.. |...+.......+.|+++|+||+|+..
T Consensus        96 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilv~nK~Dl~~  140 (190)
T 3con_A           96 FLCVFAINNSKSFADINL-YREQIKRVKDSDDVPMVLVGNKCDLPT  140 (190)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred             EEEEEECcCHHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence            999999999999998877 888877765556789999999999975

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=8.2e-27  Score=158.98  Aligned_cols=129  Identities=28%  Similarity=0.438  Sum_probs=106.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      ...+||+++|.+|+|||||++++.++.+ ..+.++.+..+ ...+.+++..+.+.+|||||++. ...+..+++.+|+++
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii  103 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV  103 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence            4569999999999999999999999988 44555655444 45567788899999999999988 677788899999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      +|||++++.+++.+.. |...+.......+.|+++|+||+|+.+++++...+.
T Consensus       104 lv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~  155 (196)
T 2atv_A          104 LVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEG  155 (196)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHhhCCCCCcEEEEEECcccccccccCHHHH
Confidence            9999999999999888 887777765566889999999999987655544333

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.95  E-value=1.2e-26  Score=160.43  Aligned_cols=123  Identities=31%  Similarity=0.571  Sum_probs=86.0

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      ..+.+||+++|.+|+|||||++++.++.+ ..+.++.+.. ....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  109 (214)
T 2j1l_A           31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFER-YMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL  109 (214)
T ss_dssp             -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEE-EEEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccee-EEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence            34679999999999999999999999887 3444555433 345667888899999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ++|||++++.+++.+...|...+...  ..+.|+++|+||+|+..++
T Consensus       110 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~  154 (214)
T 2j1l_A          110 LLCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDK  154 (214)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccc
Confidence            99999999999999875588888765  3568999999999997654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.95  E-value=2.6e-26  Score=153.98  Aligned_cols=125  Identities=18%  Similarity=0.280  Sum_probs=100.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      ...+||+++|.+|+|||||++++.++.+..+.++.+..+ ...+.+++..+.+.+|||||++.     ..+++++|++++
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il   78 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF   78 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence            356999999999999999999999999866777776444 56677888999999999999876     456788999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcC--CCCCcEEEEEeCCCCC--Cchhhhhhhh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYST--NQDCIKLLVGNKVDKV--CPWRLFLSGF  142 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~Dl~--~~~~~~~~~~  142 (154)
                      |||++++.+++.+.. |.+.+.....  ..+.|+++|+||+|+.  ..+.+..++.
T Consensus        79 v~D~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~  133 (178)
T 2iwr_A           79 VFSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARA  133 (178)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHH
T ss_pred             EEECcCHHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHH
Confidence            999999999999888 7665554422  3578999999999994  3444444333

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.94  E-value=2.7e-26  Score=154.59  Aligned_cols=120  Identities=30%  Similarity=0.545  Sum_probs=102.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      ..+||+++|.+|+|||||++++.++.+ ..+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            569999999999999999999999887 44455555443 4556778899999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      |||++++.+++.+...|...+....  .+.|+++|+||+|+.++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~  124 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDD  124 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTC
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEccccccc
Confidence            9999999999998855888887752  37899999999999754

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.94  E-value=1.6e-26  Score=158.73  Aligned_cols=124  Identities=29%  Similarity=0.494  Sum_probs=102.9

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      ....+||+++|.+|+|||||++++.++.+ ..+.++.+ ......+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  105 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  105 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            34679999999999999999999999888 34455554 34455667788889999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      ++|||++++.+++.+...|...+....  .+.|+++|+||+|+..++.
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~  151 (204)
T 4gzl_A          106 LICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKD  151 (204)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchh
Confidence            999999999999999855988888763  6789999999999976554

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.94  E-value=2e-26  Score=158.73  Aligned_cols=123  Identities=30%  Similarity=0.590  Sum_probs=103.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      ...+||+++|.+|+|||||++++.++.+ ..+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            4569999999999999999999999887 45556666544 455667888899999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      +|||++++.+++.+...|...+....  .+.|++||+||+|+.+++.
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~  130 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKG  130 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCcc
Confidence            99999999999998755988887763  4789999999999976654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.94  E-value=3.8e-26  Score=155.70  Aligned_cols=127  Identities=37%  Similarity=0.677  Sum_probs=104.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeE-----------------------------
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK-----------------------------   60 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----------------------------   60 (154)
                      ...+||+++|++|+|||||+++|++..+ ..+.++.+.++....+..++..                             
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            3569999999999999999999999988 5566777777777777776654                             


Q ss_pred             --------EEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           61 --------MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        61 --------~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                              +.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+.. |...+....   +.|+++|+||+| .
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~-~~~~i~~~~---~~piilv~NK~D-~  159 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKT-WVNQLKISS---NYIIILVANKID-K  159 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHH-HHHHHHHHS---CCEEEEEEECTT-C
T ss_pred             cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHH-HHHHHHhhC---CCcEEEEEECCC-c
Confidence                    899999999999999999999999999999999999999998887 888777652   389999999999 4


Q ss_pred             Cchhhhhhhh
Q 031704          133 CPWRLFLSGF  142 (154)
Q Consensus       133 ~~~~~~~~~~  142 (154)
                      .++++..++.
T Consensus       160 ~~~~~~~~~~  169 (208)
T 3clv_A          160 NKFQVDILEV  169 (208)
T ss_dssp             C-CCSCHHHH
T ss_pred             ccccCCHHHH
Confidence            4444444333

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.94  E-value=2.4e-26  Score=157.24  Aligned_cols=118  Identities=22%  Similarity=0.360  Sum_probs=91.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      .+.+||+++|++|+|||||++++.++.+..+.++.+.+.  ..+.+++  +.+.+|||||++.++..+..+++.+|++++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            345899999999999999999999988866666666543  4555665  789999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      |+|++++++++.+.. |...+.......+.|+++|+||+|+.+
T Consensus        99 v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~  140 (198)
T 1f6b_A           99 LVDCADHERLLESKE-ELDSLMTDETIANVPILILGNKIDRPE  140 (198)
T ss_dssp             EEETTCGGGHHHHHH-HHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred             EEECCCHHHHHHHHH-HHHHHHhCcccCCCcEEEEEECCCccc
Confidence            999999999999888 766665443446789999999999975

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.94  E-value=8.9e-26  Score=148.99  Aligned_cols=119  Identities=32%  Similarity=0.572  Sum_probs=101.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      .+||+++|++|+|||||++++.++.+. ...++.+. .....+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccce-EEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            479999999999999999999998873 44444443 3355667788889999999999999998888899999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      +|+++..+++.+.. |...+.......+.|+++|+||+|+..
T Consensus        82 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~nK~Dl~~  122 (166)
T 2ce2_X           82 FAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSDLAA  122 (166)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred             EECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence            99999999998877 888777765556789999999999976

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.94  E-value=7.3e-26  Score=150.57  Aligned_cols=118  Identities=24%  Similarity=0.384  Sum_probs=97.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      +.+||+++|++|+|||||++++.++.+....++.+.+  ...+.++  .+.+.+|||||++.+...+..+++.+|++++|
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v   81 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFN--VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   81 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEE--EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccc--eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence            4589999999999999999999999887667776643  3344444  46889999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +|++++.+++.... |...+.......+.|+++|+||+|+.++
T Consensus        82 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~  123 (171)
T 1upt_A           82 VDSCDRDRIGISKS-ELVAMLEEEELRKAILVVFANKQDMEQA  123 (171)
T ss_dssp             EETTCCTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             EECCCHHHHHHHHH-HHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence            99999999998887 5555444323467899999999999765

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.94  E-value=1.8e-26  Score=157.14  Aligned_cols=124  Identities=16%  Similarity=0.285  Sum_probs=95.8

Q ss_pred             ccCCCceeEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 031704            6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR   83 (154)
Q Consensus         6 ~~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   83 (154)
                      +.++....+||+++|.+|+|||||+++|+++.+.  .+.++.+.+..  .+.  ...+.+.+|||||++.+...+..+++
T Consensus        10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~   85 (199)
T 4bas_A           10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFE--KGRVAFTVFDMGGAKKFRGLWETYYD   85 (199)
T ss_dssp             ------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEE--ETTEEEEEEEECCSGGGGGGGGGGCT
T ss_pred             cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEE--eCCEEEEEEECCCCHhHHHHHHHHHh
Confidence            3456778899999999999999999999999983  44677764332  333  34578999999999999999999999


Q ss_pred             CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCC-------CCCcEEEEEeCCCCCCc
Q 031704           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTN-------QDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~-------~~~~~ivv~nK~Dl~~~  134 (154)
                      .+|++++|+|++++.+++.+.. |...+......       .+.|+++|+||+|+..+
T Consensus        86 ~~d~ii~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  142 (199)
T 4bas_A           86 NIDAVIFVVDSSDHLRLCVVKS-EIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA  142 (199)
T ss_dssp             TCSEEEEEEETTCGGGHHHHHH-HHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred             cCCEEEEEEECCcHHHHHHHHH-HHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence            9999999999999999999988 55554432111       37899999999999766

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=2.9e-26  Score=152.42  Aligned_cols=126  Identities=26%  Similarity=0.401  Sum_probs=101.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      ..+||+++|.+|+|||||++++.++.+ ..+.++.+.++ ......++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            358999999999999999999999887 44555555444 3455678888899999999999999888889999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhc-CCCCCcEEEEEeCCCCCCchhhhh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      |+|++++.+++.+.. |...+.... ...+.|+++|+||+|+.+++++..
T Consensus        81 v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~  129 (172)
T 2erx_A           81 VYSITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGNKCDESPSREVQS  129 (172)
T ss_dssp             EEETTCHHHHHTTHH-HHHHHHHHHC---CCCEEEEEECGGGGGGCCSCH
T ss_pred             EEECcCHHHHHHHHH-HHHHHHHHhCCCCCCCEEEEEEccccccccccCH
Confidence            999999999988887 665555442 235789999999999976655533

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.94  E-value=1.2e-25  Score=152.83  Aligned_cols=118  Identities=25%  Similarity=0.392  Sum_probs=98.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      .+.+||+++|++|+|||||++++.++.+..+.++.+.+  ...+.+++  +.+.+|||||++.++..+..+++.+|++++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            34579999999999999999999999887666776653  45566665  789999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      |+|++++.+++.+.. |...+.......+.|+++|+||+|+..
T Consensus        97 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~  138 (190)
T 1m2o_B           97 LVDAADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPN  138 (190)
T ss_dssp             EEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred             EEECCChHHHHHHHH-HHHHHHcchhhcCCCEEEEEECCCCcC
Confidence            999999999999888 666655443446789999999999975

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=9e-26  Score=155.16  Aligned_cols=121  Identities=32%  Similarity=0.593  Sum_probs=99.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      ...+||+++|.+|+|||||++++.++.+ ..+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            4678999999999999999999999888 344566655544 34677888899999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +|||++++.+++.+...|...+...  ..+.|+++|+||+|+..+
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~  144 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSD  144 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhcc
Confidence            9999999999999865588888765  257899999999999765

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.94  E-value=1.9e-26  Score=159.47  Aligned_cols=133  Identities=32%  Similarity=0.514  Sum_probs=103.8

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCc
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (154)
                      ......+||+++|.+|+|||||+++++++.+ ..+.++.+.+......... +..+.+.+|||||++.+...+..+++.+
T Consensus         6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (218)
T 4djt_A            6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA   85 (218)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred             ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence            3455779999999999999999999998887 4445666665555555443 4458999999999999999999999999


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      |++++|+|+++..+++.+.. |...+... ...+.|+++|+||+|+.+.+++...+.
T Consensus        86 d~~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~  140 (218)
T 4djt_A           86 SGAILFFDVTSRITCQNLAR-WVKEFQAV-VGNEAPIVVCANKIDIKNRQKISKKLV  140 (218)
T ss_dssp             SEEEEEEETTCHHHHHTHHH-HHHHHHHH-HCSSSCEEEEEECTTCC----CCHHHH
T ss_pred             CEEEEEEeCCCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHH
Confidence            99999999999999999887 88887766 345689999999999987666544433

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.94  E-value=1.1e-26  Score=157.74  Aligned_cols=126  Identities=24%  Similarity=0.268  Sum_probs=95.6

Q ss_pred             ccCCCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-----------CCcceeeeEEEEE-EECCeEEEEEEEeCCCccc
Q 031704            6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEEL-----------SPTIGVDFKIKHV-ALGGKKMKLAIWDTAGQER   73 (154)
Q Consensus         6 ~~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~   73 (154)
                      ........+||+++|.+|+|||||++++.+.....+           .++.+.++....+ .+++..+.+.+|||||++.
T Consensus         7 ~~~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~   86 (198)
T 3t1o_A            7 NFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF   86 (198)
T ss_dssp             ETTTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS
T ss_pred             chhccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH
Confidence            344567889999999999999999976665443332           2344444443333 4567788999999999999


Q ss_pred             ccccccccccCccEEEEEEECC------CcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           74 FRTLTSSYYRGAQGIIMVYDVT------RRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        74 ~~~~~~~~~~~~~~~v~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +...+..+++++|++++|||++      +.++++.+.. |...+..  ...+.|+++|+||+|+.++
T Consensus        87 ~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~-~l~~~~~--~~~~~piilv~NK~Dl~~~  150 (198)
T 3t1o_A           87 YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE-NLAEYGL--TLDDVPIVIQVNKRDLPDA  150 (198)
T ss_dssp             CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHH-HHHHTTC--CTTSSCEEEEEECTTSTTC
T ss_pred             HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHH-HHHhhcc--ccCCCCEEEEEEchhcccc
Confidence            9999999999999999999999      4455666655 6655532  3467899999999999765

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.94  E-value=2.5e-26  Score=151.95  Aligned_cols=116  Identities=26%  Similarity=0.499  Sum_probs=95.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   93 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d   93 (154)
                      +||+++|++|+|||||++++.++.+....|+.+..  ...+..  ..+.+.+|||||++.+...+..+++++|++++|+|
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   76 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC--EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCcee--EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence            48999999999999999999998886666766633  233333  34689999999999999988889999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      ++++++++.+.. |...+.......+.|+++|+||+|+.++
T Consensus        77 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~  116 (164)
T 1r8s_A           77 SNDRERVNEARE-ELMRMLAEDELRDAVLLVFANKQDLPNA  116 (164)
T ss_dssp             TTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             CCCHHHHHHHHH-HHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence            999999998887 6665554334567899999999999765

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.94  E-value=1.3e-25  Score=152.90  Aligned_cols=130  Identities=23%  Similarity=0.349  Sum_probs=100.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-ccccccccccCccE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDT--FEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-FRTLTSSYYRGAQG   87 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~   87 (154)
                      ...+||+++|.+|+|||||++++.+..  +....++.+.+.....+.+++..+.+.+|||+|.+. +..+...+++.+|+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            356999999999999999999999643  344445566666677788899999999999999776 45566677888999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG  141 (154)
Q Consensus        88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~  141 (154)
                      +++|||+++..+|+.+.. |...+.......+.|+++|+||+|+...+.+...+
T Consensus        84 ~i~v~dv~~~~s~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~  136 (192)
T 2cjw_A           84 YLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSE  136 (192)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHH
T ss_pred             EEEEEECCCHHHHHHHHH-HHHHHHHhhCCCCCeEEEEEechhhhccccccHHH
Confidence            999999999999999888 77766654344578999999999997655554443

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.94  E-value=7.3e-26  Score=152.47  Aligned_cols=123  Identities=24%  Similarity=0.371  Sum_probs=97.2

Q ss_pred             cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (154)
Q Consensus         7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   86 (154)
                      +....+.+||+++|.+|+|||||++++.++.+....++.+.+.  ..+.+++  +.+.+|||||++.+...+..+++++|
T Consensus        15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d   90 (181)
T 2h17_A           15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTE   90 (181)
T ss_dssp             ------CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred             cCCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCC
Confidence            3455678999999999999999999999998855556666444  3344444  78999999999999999999999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      ++++|+|++++.+++.+.. |...+.......+.|+++|+||+|+.++
T Consensus        91 ~ii~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~  137 (181)
T 2h17_A           91 FVIVVVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKEC  137 (181)
T ss_dssp             EEEEEEETTCTTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHhChhhCCCeEEEEEECCCcccC
Confidence            9999999999999999888 5555544323467899999999999764

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.94  E-value=7e-26  Score=153.49  Aligned_cols=122  Identities=25%  Similarity=0.413  Sum_probs=99.0

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   86 (154)
                      ......+||+++|.+|+|||||++++.++.+ ..+.++.+.++..  +..  ..+.+.+|||||++.+...+..+++.+|
T Consensus        17 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   92 (188)
T 1zd9_A           17 RGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITK--GNVTIKLWDIGGQPRFRSMWERYCRGVS   92 (188)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEE--TTEEEEEEEECCSHHHHTTHHHHHTTCS
T ss_pred             cCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEe--CCEEEEEEECCCCHhHHHHHHHHHccCC
Confidence            3455789999999999999999999999888 4566777765442  332  3568899999999999999999999999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      ++++|+|++++++++.+.. |...+.......+.|+++|+||+|+..+
T Consensus        93 ~ii~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~  139 (188)
T 1zd9_A           93 AIVYMVDAADQEKIEASKN-ELHNLLDKPQLQGIPVLVLGNKRDLPGA  139 (188)
T ss_dssp             EEEEEEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred             EEEEEEECCCHHHHHHHHH-HHHHHHhCcccCCCCEEEEEECCCCccC
Confidence            9999999999999999888 6555544323467899999999999754

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=1.2e-25  Score=153.17  Aligned_cols=121  Identities=28%  Similarity=0.440  Sum_probs=100.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      ...+||+++|.+|+|||||+++|.++.+ ..+.++.+.++ ......++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            4569999999999999999999999887 44556655444 345567888899999999999999988888999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcC-CCCCcEEEEEeCCCCCC
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~Dl~~  133 (154)
                      +|||++++.+++.+.. |...+..... ..+.|+++|+||+|+..
T Consensus        85 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~piilv~nK~Dl~~  128 (199)
T 2gf0_A           85 LVFSVTSKQSLEELGP-IYKLIVQIKGSVEDIPVMLVGNKCDETQ  128 (199)
T ss_dssp             EEEETTCHHHHHTTHH-HHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence            9999999999998887 6665555422 24679999999999975

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.93  E-value=1.2e-26  Score=155.92  Aligned_cols=123  Identities=33%  Similarity=0.634  Sum_probs=90.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      ...+||+++|.+|+|||||++++.++.+ ..+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            3458999999999999999999999887 344455543332 22345667788999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      +|+|++++.+++.+...|...+....  .+.|+++|+||+|+.+++.
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~  129 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQ  129 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcc
Confidence            99999999999999855888887763  4789999999999976654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.93  E-value=1.3e-25  Score=152.75  Aligned_cols=120  Identities=27%  Similarity=0.475  Sum_probs=93.1

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      ..+.+||+++|++|+|||||++++.++.+....|+.+  .....+...  .+.+.+|||||++.+...+..+++.+|+++
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~--~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETT--EEEEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCc--eeEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            3467999999999999999999999888855555555  333344443  478999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +|+|++++++++.+.. |...+.......+.|+++|+||+|+.++
T Consensus       102 lv~D~~~~~s~~~~~~-~l~~~~~~~~~~~~piilv~NK~Dl~~~  145 (192)
T 2b6h_A          102 FVVDSNDRERVQESAD-ELQKMLQEDELRDAVLLVFANKQDMPNA  145 (192)
T ss_dssp             EEEETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             EEEECCCHHHHHHHHH-HHHHHhcccccCCCeEEEEEECCCCCCC
Confidence            9999999999999887 6666554334567899999999999765

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.93  E-value=9.4e-26  Score=152.75  Aligned_cols=119  Identities=22%  Similarity=0.368  Sum_probs=97.9

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      .+.+||+++|++|+|||||++++.++.+....++.+...  ..+..+  .+.+.+|||||++.+...+..+++++|++++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   95 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNL--ETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIY   95 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCE--EEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEE--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence            467999999999999999999999888865666666433  334444  4688999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      |+|++++++++.... |...+.......+.|+++|+||+|+..+
T Consensus        96 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~  138 (189)
T 2x77_A           96 VVDSTDRDRMGVAKH-ELYALLDEDELRKSLLLIFANKQDLPDA  138 (189)
T ss_dssp             EEETTCCTTHHHHHH-HHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred             EEeCCCHHHHHHHHH-HHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence            999999999998887 5555544334467899999999999765

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.93  E-value=1.9e-25  Score=150.80  Aligned_cols=120  Identities=27%  Similarity=0.479  Sum_probs=98.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      ...+||+++|++|+|||||++++.++....+.++.+.+  ...+.++  .+.+.+|||||++.+...+..+++++|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFN--IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   91 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEE--EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccc--eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            46799999999999999999999988865666766643  3344444  4688999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      |+|++++.+++.+.. |...+.......+.|+++|+||+|+.++.
T Consensus        92 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~  135 (186)
T 1ksh_A           92 VVDSADRQRMQDCQR-ELQSLLVEERLAGATLLIFANKQDLPGAL  135 (186)
T ss_dssp             EEETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred             EEECcCHHHHHHHHH-HHHHHHhChhcCCCcEEEEEeCccCCCCC
Confidence            999999999999888 65555443345678999999999997653

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.93  E-value=3.1e-25  Score=150.40  Aligned_cols=123  Identities=24%  Similarity=0.346  Sum_probs=96.3

Q ss_pred             cCCCceeEEEEEEcCCCCCHHHHHHHHhcCC-C-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 031704            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDT-F-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG   84 (154)
Q Consensus         7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   84 (154)
                      .....+.+||+++|.+|+|||||++++.+.. + ..+.++.+  .....+.+++  +.+.+|||||++.+...+..++++
T Consensus        15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~   90 (190)
T 2h57_A           15 VPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKE   90 (190)
T ss_dssp             ------CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGG
T ss_pred             ccCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhc
Confidence            3445678999999999999999999999887 3 44555555  3444555554  689999999999999999999999


Q ss_pred             ccEEEEEEECCCcchHHHHHHHHHHHHhhhcCC--CCCcEEEEEeCCCCCCc
Q 031704           85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTN--QDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        85 ~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~ivv~nK~Dl~~~  134 (154)
                      +|++++|+|++++.+++.+.. |...+......  .+.|+++|+||+|+.++
T Consensus        91 ~d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  141 (190)
T 2h57_A           91 GQAIIFVIDSSDRLRMVVAKE-ELDTLLNHPDIKHRRIPILFFANKMDLRDA  141 (190)
T ss_dssp             CSEEEEEEETTCHHHHHHHHH-HHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred             CCEEEEEEECCCHHHHHHHHH-HHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence            999999999999999999888 66555544233  57899999999999754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.93  E-value=1.1e-25  Score=151.73  Aligned_cols=120  Identities=29%  Similarity=0.433  Sum_probs=98.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      ...+||+++|++|+|||||++++.+..+..+.++.+.+  ...+..+  .+.+.+|||||++.+...+..+++.+|++++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~   89 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIY   89 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            45699999999999999999999998775556666643  3344454  4688999999999999988999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      |+|++++++++.+.. |...+.......+.|+++|+||+|+.++.
T Consensus        90 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~  133 (181)
T 1fzq_A           90 VIDSADRKRFEETGQ-ELTELLEEEKLSCVPVLIFANKQDLLTAA  133 (181)
T ss_dssp             EEETTCGGGHHHHHH-HHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred             EEECcCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcCcccCC
Confidence            999999999998887 66555443244678999999999997654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=2.3e-25  Score=150.67  Aligned_cols=119  Identities=24%  Similarity=0.401  Sum_probs=94.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      ...+||+++|.+|+|||||++++.++.+..+.++.+.+.  ..+.+++  +.+.+|||||++.+...+..+++++|++++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   89 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   89 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            356999999999999999999999888765556665433  3344444  789999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      |+|++++++++.+.. |...+.......+.|+++|+||+|+.++
T Consensus        90 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~  132 (187)
T 1zj6_A           90 VVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKEC  132 (187)
T ss_dssp             EEETTCTTTHHHHHH-HHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred             EEeCCCHHHHHHHHH-HHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence            999999999999888 7666655433467899999999999753

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.93  E-value=3.1e-24  Score=146.62  Aligned_cols=127  Identities=48%  Similarity=0.825  Sum_probs=106.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      +..+|++++|++|||||||++++.+..+ ..+.++.+.++....+.+++..+.+.+||++|++.++.....+++.+++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            4579999999999999999999999887 455677777777888889999999999999999999888888899999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      +|+|+++..+++.+.. |...+... ...+.|+++|+||+|+.+.+.+..
T Consensus        83 ~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~  130 (199)
T 2f9l_A           83 LVYDIAKHLTYENVER-WLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPT  130 (199)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCH
T ss_pred             EEEECcCHHHHHHHHH-HHHHHHHh-cCCCCeEEEEEECcccccccCcCH
Confidence            9999999999988877 77766654 345679999999999976554433

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.92  E-value=5.5e-25  Score=147.99  Aligned_cols=119  Identities=26%  Similarity=0.442  Sum_probs=94.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      .+.+||+++|++|+|||||++++.++.+..+.++.+...  ..+.+++  +.+.+|||||++.+...+..+++.+|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF   91 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            456999999999999999999999888755566666433  3444443  788999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      |+|++++.+++.+.. |...+.......+.|+++|+||+|+.++
T Consensus        92 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~  134 (183)
T 1moz_A           92 VVDSTDKDRMSTASK-ELHLMLQEEELQDAALLVFANKQDQPGA  134 (183)
T ss_dssp             EEETTCTTTHHHHHH-HHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred             EEECCCHHHHHHHHH-HHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence            999999999999888 6666655434567899999999999764

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.92  E-value=2.3e-25  Score=151.90  Aligned_cols=123  Identities=22%  Similarity=0.217  Sum_probs=87.8

Q ss_pred             cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeE--EEEEEEC-CeEEEEEEEeCCCcccccccc---cc
Q 031704            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFK--IKHVALG-GKKMKLAIWDTAGQERFRTLT---SS   80 (154)
Q Consensus         7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~i~D~~g~~~~~~~~---~~   80 (154)
                      +.+..+.+||+++|.+|+|||||++++.++....  ++.+.++.  .....+. +..+.+.+|||+|++.+....   ..
T Consensus        14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   91 (196)
T 3llu_A           14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEM   91 (196)
T ss_dssp             ------CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHH
T ss_pred             CcccCcceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccc
Confidence            4566788999999999999999999887754333  33333222  2223332 566789999999999987776   78


Q ss_pred             cccCccEEEEEEECCCc--chHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           81 YYRGAQGIIMVYDVTRR--DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        81 ~~~~~~~~v~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +++++|++++|||+++.  ++++.+.. |...+..  ...+.|+++|+||+|+..+
T Consensus        92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~-~l~~~~~--~~~~~piilv~nK~Dl~~~  144 (196)
T 3llu_A           92 IFRGTGALIYVIDAQDDYMEALTRLHI-TVSKAYK--VNPDMNFEVFIHKVDGLSD  144 (196)
T ss_dssp             HHHTCSEEEEEEETTSCCHHHHHHHHH-HHHHHHH--HCTTCEEEEEEECGGGSCH
T ss_pred             ccccCCEEEEEEECCCchHHHHHHHHH-HHHHHHh--cCCCCcEEEEEeccccCch
Confidence            89999999999999997  55555555 5555543  2457899999999998763

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.92  E-value=6.5e-24  Score=144.33  Aligned_cols=130  Identities=47%  Similarity=0.821  Sum_probs=110.2

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   86 (154)
                      ...+..++++++|++|||||||++++.+..+ ..+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.++
T Consensus        24 ~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~  103 (191)
T 1oix_A           24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAV  103 (191)
T ss_dssp             CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCC
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCC
Confidence            3446779999999999999999999999887 567788888888888889999999999999999998888888899999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                      ++++|+|+++..+++.+.. |...+... ...+.|+++++||+|+.+.+....
T Consensus       104 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~  154 (191)
T 1oix_A          104 GALLVYDIAKHLTYENVER-WLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPT  154 (191)
T ss_dssp             EEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCH
T ss_pred             EEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECcccccccccCH
Confidence            9999999999999888777 77766554 345679999999999976554433

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.92  E-value=2.6e-25  Score=150.28  Aligned_cols=122  Identities=25%  Similarity=0.434  Sum_probs=91.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC--CC-CCCCCcceeeeEEEEEEE---CCeEEEEEEEeCCCcccccccccccccCcc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSD--TF-EELSPTIGVDFKIKHVAL---GGKKMKLAIWDTAGQERFRTLTSSYYRGAQ   86 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~--~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   86 (154)
                      .+||+++|++|||||||++++.+.  .+ ..+.++.+.++....+..   ++..+.+.+|||+|++.+......+++.++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            479999999999999999999985  34 345667666655544433   345678999999999999988888899999


Q ss_pred             EEEEEEECCCc-chHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           87 GIIMVYDVTRR-DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        87 ~~v~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      ++++|||++++ .+++.+.. |...+...  ..+.|+++|+||+|+.+++.+
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~-~~~~~~~~--~~~~piilv~nK~Dl~~~~~~  130 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKP-WLFNIKAR--ASSSPVILVGTHLDVSDEKQR  130 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHH-HHHHHHHH--CTTCEEEEEEECGGGCCHHHH
T ss_pred             EEEEEEeCCcchhHHHHHHH-HHHHHHhh--CCCCcEEEEEECCCcccchhh
Confidence            99999999997 47888877 88877664  246899999999999876654

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.91  E-value=6.6e-24  Score=154.88  Aligned_cols=120  Identities=29%  Similarity=0.545  Sum_probs=102.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      ..+||+++|.+|+|||||++++.++.+ ..+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|++++
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            458999999999999999999999888 45555555444 4566778899999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      |||++++.+++.+...|...+....  .+.|+++|+||+|+...
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~  274 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDD  274 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTC
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccc
Confidence            9999999999998865888887753  37899999999999654

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.91  E-value=3.5e-24  Score=147.68  Aligned_cols=123  Identities=17%  Similarity=0.234  Sum_probs=94.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCe-EEEEEEEeCCCcccccc-cccccccCccEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGK-KMKLAIWDTAGQERFRT-LTSSYYRGAQGI   88 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~   88 (154)
                      .+.+||+++|++|+|||||+++++++.+....++.+.....  +.+++. .+.+.+|||||++.+.. ++..+++.+|++
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   82 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV   82 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence            45689999999999999999999999885555555444433  555544 67899999999999887 778889999999


Q ss_pred             EEEEECCCcc-hHHHHHHHHHHHHhhh-cCCCCCcEEEEEeCCCCCCch
Q 031704           89 IMVYDVTRRD-TFTNLADIWAKEIDLY-STNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        89 v~v~d~~~~~-s~~~~~~~~~~~~~~~-~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ++|+|+++.. ++......|...+... ....+.|+++|+||+|+..++
T Consensus        83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  131 (214)
T 2fh5_B           83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK  131 (214)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred             EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence            9999999854 4666666566665542 234578999999999997654

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.91  E-value=5.3e-24  Score=154.65  Aligned_cols=118  Identities=30%  Similarity=0.459  Sum_probs=92.1

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC--C--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc-----cccccccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--E--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF-----RTLTSSYY   82 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~   82 (154)
                      ..+||+++|.+|+|||||+++++++..  .  .+.+|.+..+  ..+.+++ .+.+.+|||||++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~--~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEH--SHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEE--EEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEE--EEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            358999999999999999999998743  2  3334444433  3444444 578999999999988     67788889


Q ss_pred             cCccEEEEEEECCCcchHHHHHHHHHHHHhhhc-CCCCCcEEEEEeCCCCCC
Q 031704           83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        83 ~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~Dl~~  133 (154)
                      +++|++++|||++++.+++.+.. |...+.... ...+.|+++|+||+|+..
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~-~~~~l~~l~~~~~~~piilv~NK~Dl~~  129 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEI-FAKALKQLRKYSPDAKIFVLLHKMDLVQ  129 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHH-HHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred             ccCCEEEEEEECCChhhHHHHHH-HHHHHHHHHHhCCCCeEEEEEecccccc
Confidence            99999999999999999998876 654443321 145789999999999987

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.85  E-value=2.5e-26  Score=157.44  Aligned_cols=122  Identities=30%  Similarity=0.535  Sum_probs=100.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      .+.+||+++|.+|+|||||++++.++.+ ..+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++++|+++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            4679999999999999999999998887 34445544333 344556777888999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      +|+|++++.+++.+...|...+....  .+.|+++|+||+|+.+.+
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~  150 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDK  150 (204)
Confidence            99999999999988755887776642  378999999999997543

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.91  E-value=4.2e-24  Score=156.51  Aligned_cols=120  Identities=25%  Similarity=0.473  Sum_probs=92.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      ...+||+++|.+|+|||||++++.++.+....++.+....  .+..  ..+.+.+|||||++.+..++..+++.+|++++
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~--~~~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEE--EEEE--TTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEE--EEec--CcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            3567999999999999999999999888554555554332  3333  34689999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      |||++++.+++.+...|...+... ...+.|++||+||+|+.++.
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilV~NK~Dl~~~~  282 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAED-ELRDAVLLVFANKQDLPNAM  282 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCC
T ss_pred             EEECCchHHHHHHHHHHHHHHhhh-ccCCCeEEEEEECccCCccc
Confidence            999999999999888444444433 45688999999999997654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.90  E-value=6.3e-23  Score=137.21  Aligned_cols=116  Identities=20%  Similarity=0.217  Sum_probs=87.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      .+.++|+++|++|+|||||++++.+..+ ....++.+.+.....+..++.  .+.+|||||++.+...+..+++.+|+++
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            4568999999999999999999999887 344454444444455566664  5679999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +|+|+++.........  ...+    ...+.|+++|+||+|+.+.
T Consensus        84 ~v~d~~~~~~~~~~~~--l~~~----~~~~~p~ilv~nK~Dl~~~  122 (178)
T 2lkc_A           84 LVVAADDGVMPQTVEA--INHA----KAANVPIIVAINKMDKPEA  122 (178)
T ss_dssp             EEEETTCCCCHHHHHH--HHHH----GGGSCCEEEEEETTTSSCS
T ss_pred             EEEECCCCCcHHHHHH--HHHH----HhCCCCEEEEEECccCCcC
Confidence            9999988543322221  1222    2347899999999999764

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.90  E-value=1.6e-22  Score=133.06  Aligned_cols=132  Identities=20%  Similarity=0.191  Sum_probs=87.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-------ccccccccccC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-------FRTLTSSYYRG   84 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~   84 (154)
                      +||+++|++|+|||||++++.+..+.  ...+..+.+.....+..++.  .+.+|||||...       +...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            68999999999999999999998753  33333333445555556554  678999999876       33445567889


Q ss_pred             ccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhhhhccccccC
Q 031704           85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLSKFYCSS  154 (154)
Q Consensus        85 ~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~S  154 (154)
                      +|++++|+|+++..+...  ..+.+.+..    .+.|+++|+||+|+.+++ ....++..++...++++|
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~----~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~S  142 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRR----KGKPVILVATKVDDPKHE-LYLGPLYGLGFGDPIPTS  142 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHH----HTCCEEEEEECCCSGGGG-GGCGGGGGGSSCSCEECB
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHh----cCCCEEEEEECcccccch-HhHHHHHhCCCCCeEEEe
Confidence            999999999998644432  212333333    368999999999997653 233333344444556655

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.89  E-value=3.4e-24  Score=151.95  Aligned_cols=129  Identities=19%  Similarity=0.246  Sum_probs=90.3

Q ss_pred             CCCceeEEEEEEcCC---------CCCHHHHHHHHhcC---CC-CCCCCcc-eeeeEEE--------------EEEECCe
Q 031704            8 QEFDYLFKLLLIGDS---------GVGKSTLLLSFTSD---TF-EELSPTI-GVDFKIK--------------HVALGGK   59 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~---------~~GKstli~~l~~~---~~-~~~~~~~-~~~~~~~--------------~~~~~~~   59 (154)
                      ......+||+++|.+         |+|||||+++|.++   .+ ..+.++. +.++...              ...+++.
T Consensus        14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   93 (255)
T 3c5h_A           14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV   93 (255)
T ss_dssp             SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred             CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence            345677999999999         99999999999984   44 3444443 2221111              1124567


Q ss_pred             EEEEEEEe-----------------------CCCccccccccccccc---------------------CccEEEEEEECC
Q 031704           60 KMKLAIWD-----------------------TAGQERFRTLTSSYYR---------------------GAQGIIMVYDVT   95 (154)
Q Consensus        60 ~~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~v~v~d~~   95 (154)
                      .+.+.+||                       ++|++.+..++..+++                     ++|++++|||++
T Consensus        94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t  173 (255)
T 3c5h_A           94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS  173 (255)
T ss_dssp             --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred             EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence            78999999                       6667777777777776                     799999999999


Q ss_pred             Cc--chHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           96 RR--DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        96 ~~--~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      ++  .+++.+.. |...+.......+.|+++|+||+|+..++.+
T Consensus       174 ~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v  216 (255)
T 3c5h_A          174 RGMNRNFDDQLK-FVSNLYNQLAKTKKPIVVVLTKCDEGVERYI  216 (255)
T ss_dssp             C----CHHHHHH-HHHHHHHHHHHTTCCEEEEEECGGGBCHHHH
T ss_pred             CCchhhHHHHHH-HHHHHHHHhccCCCCEEEEEEcccccccHHH
Confidence            98  89999887 8877765433457899999999999776655

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.89  E-value=2e-23  Score=144.23  Aligned_cols=118  Identities=21%  Similarity=0.325  Sum_probs=91.4

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCCCC----CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC-
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE----LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG-   84 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~-   84 (154)
                      ....++|+++|++|+|||||++++.+..+..    ..++.+..+         ..+.+.+|||||++.++..+..+++. 
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~   79 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR   79 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence            4466899999999999999999999988633    333333222         34578999999999998888888877 


Q ss_pred             ---ccEEEEEEECC-CcchHHHHHHHHHHHHhhhc---CCCCCcEEEEEeCCCCCCchhh
Q 031704           85 ---AQGIIMVYDVT-RRDTFTNLADIWAKEIDLYS---TNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        85 ---~~~~v~v~d~~-~~~s~~~~~~~~~~~~~~~~---~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                         +|++++|+|++ +++++..... |+..+....   ...+.|+++|+||+|+..++.+
T Consensus        80 ~~~~~~~i~v~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~  138 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTARPP  138 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred             cccCCEEEEEEECCCChHHHHHHHH-HHHHHHhcccccccCCCCEEEEEEchHhcccCCH
Confidence               89999999999 8888888887 554444321   2357899999999999876543

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.88  E-value=1.4e-22  Score=147.26  Aligned_cols=120  Identities=20%  Similarity=0.215  Sum_probs=88.7

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceee--eEEEEEEECCeEEEEEEEeCCCccccc----------
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVD--FKIKHVALGGKKMKLAIWDTAGQERFR----------   75 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~----------   75 (154)
                      ++....-.|+++|.+|+|||||+|+|++.++....+..+.+  ........+ ....+.+|||||.....          
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence            44556689999999999999999999999875444333333  222333332 14678899999986544          


Q ss_pred             ccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           76 TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        76 ~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      .....+++.+|++++|+|+++..+...... |.+.+..    .+.|+++|+||+|+..
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~-~~~~l~~----~~~pvilV~NK~Dl~~  136 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEEI-YQNFIKP----LNKPVIVVINKIDKIG  136 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHHHTGG----GCCCEEEEEECGGGSS
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHHH-HHHHHHh----cCCCEEEEEECccCCC
Confidence            455667889999999999999888777655 6777665    3689999999999973

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.88  E-value=2.9e-23  Score=150.84  Aligned_cols=113  Identities=18%  Similarity=0.232  Sum_probs=83.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC----CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc---cccccccCccE
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEE----LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT---LTSSYYRGAQG   87 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~   87 (154)
                      ||+++|..|+|||||++++..+..+.    ..++.+.++..    ++ ..+++++|||+|+++|..   ....+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999887664432    45666665543    22 347899999999999964   35788999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhh-cCCCCCcEEEEEeCCCCCCc
Q 031704           88 IIMVYDVTRRDTFTNLADIWAKEIDLY-STNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +++|||++++ .++.... |.+.+... ...++.|+++||||+|+..+
T Consensus        76 ~IlV~Ditd~-~~~~~~~-l~~~l~~~~~~~~~ipillvgNK~DL~~~  121 (331)
T 3r7w_B           76 LVYVIDSQDE-YINAITN-LAMIIEYAYKVNPSINIEVLIHKVDGLSE  121 (331)
T ss_dssp             EEEECCCSSC-TTHHHHH-HHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred             EEEEEECCch-HHHHHHH-HHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence            9999999997 3333333 43333221 12457899999999999865

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.88  E-value=2.2e-22  Score=136.59  Aligned_cols=120  Identities=17%  Similarity=0.247  Sum_probs=83.3

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG----------QERFRTL   77 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~   77 (154)
                      +....++|+++|.+|+|||||+++++++.+ ....++.+.+.....+..++   .+.+|||||          ++.+...
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~   95 (195)
T 1svi_A           19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence            445679999999999999999999999885 55556666555555555554   589999999          6666666


Q ss_pred             ccccccCc---cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           78 TSSYYRGA---QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        78 ~~~~~~~~---~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      +..+++.+   |++++|+|+++..++....  +...+..    .+.|+++|+||+|+.+++++
T Consensus        96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~----~~~p~i~v~nK~Dl~~~~~~  152 (195)
T 1svi_A           96 IETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY----YGIPVIVIATKADKIPKGKW  152 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH----TTCCEEEEEECGGGSCGGGH
T ss_pred             HHHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH----cCCCEEEEEECcccCChHHH
Confidence            66766666   9999999999887776542  2223322    46799999999999877654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.88  E-value=3.7e-22  Score=132.52  Aligned_cols=114  Identities=21%  Similarity=0.249  Sum_probs=80.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc------ccccccc--
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT------LTSSYYR--   83 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~--   83 (154)
                      .++|+++|++|+|||||++++.+..+ ....++.+.+.....+..++  ..+.+|||||++.+..      +...+++  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            47999999999999999999998776 33344444444445555554  4789999999887652      2344554  


Q ss_pred             CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      ++|++++|+|+++.++   ... |...+..    .+.|+++|+||+|+..++.
T Consensus        81 ~~~~~i~v~D~~~~~~---~~~-~~~~~~~----~~~p~ilv~nK~Dl~~~~~  125 (165)
T 2wji_A           81 KPDLVVNIVDATALER---NLY-LTLQLME----MGANLLLALNKMDLAKSLG  125 (165)
T ss_dssp             CCSEEEEEEETTCHHH---HHH-HHHHHHH----TTCCEEEEEECHHHHHHTT
T ss_pred             CCCEEEEEecCCchhH---hHH-HHHHHHh----cCCCEEEEEEchHhccccC
Confidence            7999999999988543   233 5555544    2689999999999965443

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.88  E-value=2.9e-23  Score=140.76  Aligned_cols=118  Identities=20%  Similarity=0.282  Sum_probs=87.5

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC----CCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC-
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEEL----SPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG-   84 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~-   84 (154)
                      ....++|+++|++|+|||||++++.+..+...    .++.+.         +...+.+.+|||||++.+...+..+++. 
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~  115 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTR  115 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee---------eecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence            34668999999999999999999999876321    122211         1134578899999999888877777765 


Q ss_pred             ---ccEEEEEEECC-CcchHHHHHHHHHHHHhhhc---CCCCCcEEEEEeCCCCCCchhh
Q 031704           85 ---AQGIIMVYDVT-RRDTFTNLADIWAKEIDLYS---TNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        85 ---~~~~v~v~d~~-~~~s~~~~~~~~~~~~~~~~---~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                         +|++++|+|++ +..++..... |...+....   ...+.|+++|+||+|+..++.+
T Consensus       116 ~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~  174 (193)
T 2ged_A          116 AKFVKGLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTARPP  174 (193)
T ss_dssp             GGGEEEEEEEEETTCCHHHHHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred             cccCCEEEEEEECCCCchhHHHHHH-HHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence               89999999999 8888888877 554443321   2357899999999999876544

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.87  E-value=8.3e-22  Score=142.70  Aligned_cols=120  Identities=21%  Similarity=0.227  Sum_probs=83.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CcceeeeEEEEEEECCeEEEEEEEeCCCccc--------ccccccc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS--PTIGVDFKIKHVALGGKKMKLAIWDTAGQER--------FRTLTSS   80 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~   80 (154)
                      .+..+|+++|.+|+|||||+|++++.++....  +.++..........  ....+.+|||||...        +......
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~--~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE--GRRQIVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE--TTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe--CCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence            35578999999999999999999998874322  22222222222222  345789999999765        3445566


Q ss_pred             cccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        81 ~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      +++.+|++++|+|+++..+...  ..+.+.+...  ..+.|+++|+||+|+..++.
T Consensus        83 ~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~--~~~~p~ilV~NK~Dl~~~~~  134 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPPTPED--ELVARALKPL--VGKVPILLVGNKLDAAKYPE  134 (301)
T ss_dssp             HTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGG--TTTSCEEEEEECGGGCSSHH
T ss_pred             HHhcCCEEEEEEECCCCCChHH--HHHHHHHHhh--cCCCCEEEEEECcccCCchH
Confidence            7899999999999998655432  3123445443  24689999999999986655

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.87  E-value=1e-21  Score=136.81  Aligned_cols=123  Identities=18%  Similarity=0.090  Sum_probs=80.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc---------ccccc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR---------TLTSS   80 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~   80 (154)
                      ...+||+++|.+|+|||||+++|++..+. ...+..+.+.....+...+  +.+.+|||||.....         ..+..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            45699999999999999999999998873 2223333333333333333  578999999983211         11233


Q ss_pred             cccCccEEEEEEECCCcchHHHHH-HHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           81 YYRGAQGIIMVYDVTRRDTFTNLA-DIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        81 ~~~~~~~~v~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      +++.+|++++|+|++++.+++... ..|...+...  ..+.|+++|+||+|+...+.+
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~  160 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSL  160 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CC
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhh
Confidence            467889999999999987765221 1245554432  247899999999999876554

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.87  E-value=8e-22  Score=131.89  Aligned_cols=117  Identities=22%  Similarity=0.186  Sum_probs=85.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TSSY   81 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   81 (154)
                      ...||+++|.+|+|||||++++.+....  ...+..+.++....+.+++.  .+.+|||||...+...        ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            3479999999999999999999987652  33344444555666777764  4789999998653221        1235


Q ss_pred             ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      ++.+|++++|+|+++..+++. .. |...+... ...+.|+++|+||+|+..
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~-~~-~~~~~~~~-~~~~~p~ilv~NK~Dl~~  129 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDP-AE-IWPEFIAR-LPAKLPITVVRNKADITG  129 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSH-HH-HCHHHHHH-SCTTCCEEEEEECHHHHC
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HH-HHHHHHHh-cccCCCEEEEEECccCCc
Confidence            789999999999999888763 34 66666554 345789999999999954

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.86  E-value=1.4e-22  Score=136.89  Aligned_cols=116  Identities=24%  Similarity=0.333  Sum_probs=84.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCC-----------ccccccccccc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG-----------QERFRTLTSSY   81 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~   81 (154)
                      +||+++|++|+|||||++++.+..+ ....++.+  .....+...    .+.+|||||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVT--RKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCT--TSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcc--ceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            6899999999999999999999887 33344333  223333333    688999999           56666677777


Q ss_pred             ccC-ccEEEEEEECCCcchHHHHHHHHHHH--------HhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           82 YRG-AQGIIMVYDVTRRDTFTNLADIWAKE--------IDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        82 ~~~-~~~~v~v~d~~~~~s~~~~~~~~~~~--------~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ++. ++++++|+++.+..+++.+...|...        +.......+.|+++|+||+|+..++
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  138 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV  138 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH
Confidence            776 78777788887888887775556542        2222234578999999999998765

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.86  E-value=1e-21  Score=149.83  Aligned_cols=137  Identities=17%  Similarity=0.090  Sum_probs=80.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TSSY   81 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   81 (154)
                      ..+||+++|.+|+|||||+|+|++.+.  ....+.++.+.....+.+++  +.+.+|||||...+...        ...+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            358999999999999999999999864  33344444444445556655  46899999998765533        2446


Q ss_pred             ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhhhhccccccC
Q 031704           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLSKFYCSS  154 (154)
Q Consensus        82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~S  154 (154)
                      ++.+|++++|+|++++.+++.+.. +...+...   .+.|+++|+||+|+.........++...+...++++|
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~l---~~~piIvV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vS  378 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDELTE-IRELKAAH---PAAKFLTVANKLDRAANADALIRAIADGTGTEVIGIS  378 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGHHH-HHHHHHHC---TTSEEEEEEECTTSCTTTHHHHHHHHHHHTSCEEECB
T ss_pred             cccCCEEEEEEECCCCcchhhhHH-HHHHHHhc---CCCCEEEEEECcCCCCccchhHHHHHhcCCCceEEEE
Confidence            789999999999999888765433 44444433   2689999999999987766544334333233445554

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.86  E-value=2.5e-21  Score=131.02  Aligned_cols=119  Identities=21%  Similarity=0.206  Sum_probs=85.3

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG----------QERFRTL   77 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~   77 (154)
                      .+....+||+++|.+|+|||||++++++.......++.+.+........+.   .+.+|||||          ++.+...
T Consensus        18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~   94 (195)
T 3pqc_A           18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRL   94 (195)
T ss_dssp             CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHH
Confidence            344566899999999999999999999998766666666555555444443   477999999          5556666


Q ss_pred             ccccccCc---cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           78 TSSYYRGA---QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        78 ~~~~~~~~---~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      +..+++.+   |++++|+|+++..+.....  +...+...    +.|+++|+||+|+.++.
T Consensus        95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~--~~~~~~~~----~~p~i~v~nK~Dl~~~~  149 (195)
T 3pqc_A           95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLM--MVEWMKSL----NIPFTIVLTKMDKVKMS  149 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHHT----TCCEEEEEECGGGSCGG
T ss_pred             HHHHHhcCcCceEEEEEecCCCCCCHHHHH--HHHHHHHc----CCCEEEEEEChhcCChH
Confidence            66666554   9999999998765443321  22233322    68999999999997554

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.86  E-value=2e-21  Score=131.06  Aligned_cols=115  Identities=21%  Similarity=0.243  Sum_probs=84.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc------cccccccc-
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR------TLTSSYYR-   83 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~-   83 (154)
                      +.+||+++|++|+|||||++++.+..+ ....++.+.+.....+..++  ..+.+|||||++.+.      .....+++ 
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            468999999999999999999998765 34445555555555566654  678999999988764      23444554 


Q ss_pred             -CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           84 -GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        84 -~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                       .+|++++|+|.++   ++.... |...+..    .+.|+++|+||+|+...+.
T Consensus        84 ~~~~~~i~v~d~~~---~~~~~~-~~~~~~~----~~~piilv~nK~Dl~~~~~  129 (188)
T 2wjg_A           84 EKPDLVVNIVDATA---LERNLY-LTLQLME----MGANLLLALNKMDLAKSLG  129 (188)
T ss_dssp             HCCSEEEEEEEGGG---HHHHHH-HHHHHHT----TTCCEEEEEECHHHHHHTT
T ss_pred             cCCCEEEEEecchh---HHHHHH-HHHHHHh----cCCCEEEEEEhhhcccccc
Confidence             4899999999876   344444 6555543    4689999999999965443

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.86  E-value=9.4e-22  Score=139.46  Aligned_cols=112  Identities=21%  Similarity=0.183  Sum_probs=83.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc----------cccccc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT----------LTSSYY   82 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~   82 (154)
                      .+|+++|.+|+|||||+|+|.+... ....+..+.+.....+..++.  .+.+|||||...+..          ....++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            4899999999999999999999876 444455555566666666664  788999999877654          344555


Q ss_pred             --cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           83 --RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        83 --~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                        +++|++++|+|+++.++...+.    ..+..    .+.|+++|+||+|+...+
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~----~~l~~----~~~pvilv~NK~Dl~~~~  126 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLT----SQLFE----LGKPVVVALNMMDIAEHR  126 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHH----HHHTT----SCSCEEEEEECHHHHHHT
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHH----HHHHH----cCCCEEEEEEChhcCCcC
Confidence              7899999999999865544332    23333    378999999999996544

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.85  E-value=3.6e-22  Score=151.24  Aligned_cols=134  Identities=19%  Similarity=0.168  Sum_probs=85.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc--------cccccccccccCc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE--------RFRTLTSSYYRGA   85 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~~   85 (154)
                      ++|+++|.+|+|||||+|+|.+.+.....++.|.+..............+.+|||||.+        .+......+++.+
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a   83 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA   83 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence            58999999999999999999998875556666665555544444444578999999975        4556667778999


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhhhhccccccC
Q 031704           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLSKFYCSS  154 (154)
Q Consensus        86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~S  154 (154)
                      |++++|+|+.++.+.... . +.+.++    ..+.|+++|+||+|+...+ ....+++++++.+++++|
T Consensus        84 d~il~vvD~~~~~~~~d~-~-~~~~l~----~~~~pvilv~NK~D~~~~~-~~~~~~~~lg~~~~~~iS  145 (436)
T 2hjg_A           84 DVIIFMVNGREGVTAADE-E-VAKILY----RTKKPVVLAVNKLDNTEMR-ANIYDFYSLGFGEPYPIS  145 (436)
T ss_dssp             SEEEEEEETTTCSCHHHH-H-HHHHHT----TCCSCEEEEEECCCC------CCCSSGGGSSCCCEECB
T ss_pred             CEEEEEEeCCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECccCccch-hhHHHHHHcCCCCeEEEe
Confidence            999999999987665432 1 333333    3578999999999997543 234456667777778776

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.85  E-value=2.8e-21  Score=137.44  Aligned_cols=123  Identities=20%  Similarity=0.202  Sum_probs=84.9

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc-----
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS--PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR-----   83 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-----   83 (154)
                      ...++|+++|.+|+|||||+|++++.......  +..+.......+..++  ..+.+|||||+.++......+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            35799999999999999999999998863222  2222333334444444  47899999999877665444443     


Q ss_pred             ----CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCC-CCCcEEEEEeCCCCCCchh
Q 031704           84 ----GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTN-QDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        84 ----~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~ivv~nK~Dl~~~~~  136 (154)
                          ++|++++|++++... +......|.+.+...... ...|+++|+||+|+..++.
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~  168 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDE  168 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTT
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCC
Confidence                789999999987654 443333366666654222 2348999999999965543

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.85  E-value=5.2e-21  Score=135.78  Aligned_cols=117  Identities=19%  Similarity=0.161  Sum_probs=83.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccc------cccc-
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLT------SSYY-   82 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~------~~~~-   82 (154)
                      .+.++|+++|++|+|||||+|+|.+..+ ....+..+.......+...  ...+.+|||||...+....      ..++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK--GYTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC--CeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            3568999999999999999999998776 3334443333333344433  3689999999988776532      4444 


Q ss_pred             -cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           83 -RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        83 -~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                       ..+|++++|+|+++.++...    |...+..    .+.|+++|+||+|+...+.+
T Consensus        81 ~~~~d~ii~V~D~t~~~~~~~----~~~~l~~----~~~pvilv~NK~Dl~~~~~i  128 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQSLY----LLLEILE----MEKKVILAMTAIDEAKKTGM  128 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHHHH----HHHHHHT----TTCCEEEEEECHHHHHHTTC
T ss_pred             hcCCCEEEEEeCCCchhhHHH----HHHHHHh----cCCCEEEEEECcCCCCccch
Confidence             57999999999998765432    4445443    37899999999999654433

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.85  E-value=2e-21  Score=150.53  Aligned_cols=126  Identities=23%  Similarity=0.338  Sum_probs=91.9

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEE------EEE--CCeEEEEEEEeCCCcccccccccc
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKH------VAL--GGKKMKLAIWDTAGQERFRTLTSS   80 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~------~~~--~~~~~~~~i~D~~g~~~~~~~~~~   80 (154)
                      ....+||+++|.+|+|||||++++.+..+ ....++.+.++....      +.+  ++..+.+.+||+||++.+......
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            45679999999999999999999999887 556677776665442      111  234578999999999999999999


Q ss_pred             cccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704           81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG  141 (154)
Q Consensus        81 ~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~  141 (154)
                      +++++|++++|+|+++.+.   ... |...+....  .+.|+++|+||+|+...+.+...+
T Consensus       118 ~l~~~d~ii~V~D~s~~~~---~~~-~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~  172 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTDSN---KHY-WLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKK  172 (535)
T ss_dssp             HHHSSEEEEEEECGGGGGG---HHH-HHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHH
T ss_pred             HccCCcEEEEEEeCCCchh---HHH-HHHHHHHhC--CCCCEEEEEECCCcccccccCHHH
Confidence            9999999999999987643   344 777877762  368999999999998766654433

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.85  E-value=1.3e-21  Score=148.28  Aligned_cols=133  Identities=22%  Similarity=0.219  Sum_probs=86.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc---------ccccccccc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER---------FRTLTSSYY   82 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~   82 (154)
                      .+|+++|.+|+|||||+|+|++++..  ...+..+.+.....+..++.  .+.+|||||.+.         +......++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            48999999999999999999988753  33333333344455566665  478899999654         233456678


Q ss_pred             cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh-hhhhhhhhccccccC
Q 031704           83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL-SGFWHFLLSKFYCSS  154 (154)
Q Consensus        83 ~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~S  154 (154)
                      +.+|++++|+|+++..+.... . +...++.    .+.|+++|+||+|+........ .+++++++.+++++|
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~-~-i~~~l~~----~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iS  146 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDE-S-LADFLRK----STVDTILVANKAENLREFEREVKPELYSLGFGEPIPVS  146 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHH-H-HHHHHHH----HTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECB
T ss_pred             HhCCEEEEEEECCCCCCHHHH-H-HHHHHHH----cCCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEe
Confidence            999999999999886554331 1 2223333    2678999999999964322233 556666776778776

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.85  E-value=1.5e-21  Score=135.13  Aligned_cols=123  Identities=20%  Similarity=0.147  Sum_probs=84.7

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCc----------ccccc
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQ----------ERFRT   76 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~----------~~~~~   76 (154)
                      +....++|+++|.+|+|||||+|+|++... .......+.+......... .....+.+|||||.          +.+..
T Consensus        25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~  104 (223)
T 4dhe_A           25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ  104 (223)
T ss_dssp             CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence            345678999999999999999999999873 3444444444444444444 34467889999994          33344


Q ss_pred             cccccccC---ccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           77 LTSSYYRG---AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        77 ~~~~~~~~---~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      ....+++.   +|++++|+|+++..+... .. |...+..    .+.|+++|+||+|+..++..
T Consensus       105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~-~~~~l~~----~~~p~i~v~nK~Dl~~~~~~  162 (223)
T 4dhe_A          105 LLSSYLQTRPQLCGMILMMDARRPLTELD-RR-MIEWFAP----TGKPIHSLLTKCDKLTRQES  162 (223)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHH-HH-HHHHHGG----GCCCEEEEEECGGGSCHHHH
T ss_pred             HHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HH-HHHHHHh----cCCCEEEEEeccccCChhhH
Confidence            44455554   789999999987544221 22 4455544    46899999999999876553

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.84  E-value=3.7e-21  Score=137.64  Aligned_cols=114  Identities=18%  Similarity=0.146  Sum_probs=81.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc----------cccc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL----------TSSY   81 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~   81 (154)
                      .++|+++|.+|+|||||+|+|++... ....+..+.+.....+...+  ..+.+|||||...+...          ...+
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            48999999999999999999999876 33444444445555555544  36788999998776631          2222


Q ss_pred             --ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           82 --YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        82 --~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                        .+.+|++++|+|+++.++...    |...+...    +.|+++|+||+|+...+.
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~~----~~~~l~~~----~~p~ivv~NK~Dl~~~~~  129 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNLY----LTLQLLEL----GIPCIVALNMLDIAEKQN  129 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHHH----HHHHHHHH----TCCEEEEEECHHHHHHTT
T ss_pred             HhhcCCCEEEEEecCCChHHHHH----HHHHHHhc----CCCEEEEEECccchhhhh
Confidence              268999999999998654433    33344443    689999999999965443

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.83  E-value=1.8e-21  Score=148.20  Aligned_cols=136  Identities=19%  Similarity=0.145  Sum_probs=89.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCC--------ccccccccccccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG--------QERFRTLTSSYYR   83 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~~~~~   83 (154)
                      ..++|+++|.+|+|||||+|+|++.+.....++.+.+..............+.+|||||        ++.+......+++
T Consensus        22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~  101 (456)
T 4dcu_A           22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD  101 (456)
T ss_dssp             -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence            45799999999999999999999988765566667666666666655556899999999        6666777778889


Q ss_pred             CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhhhhccccccC
Q 031704           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLSKFYCSS  154 (154)
Q Consensus        84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~S  154 (154)
                      .+|++++|+|..+..+...  ..+.+.++    ..+.|+++|+||+|+...+ ....+++.+++.+++++|
T Consensus       102 ~ad~il~VvD~~~~~~~~d--~~l~~~l~----~~~~pvilV~NK~D~~~~~-~~~~e~~~lg~~~~~~iS  165 (456)
T 4dcu_A          102 EADVIIFMVNGREGVTAAD--EEVAKILY----RTKKPVVLAVNKLDNTEMR-ANIYDFYSLGFGEPYPIS  165 (456)
T ss_dssp             HCSEEEEEEESSSCSCHHH--HHHHHHHT----TCCSCEEEEEECC----------CCSGGGSSSSEEECC
T ss_pred             hCCEEEEEEeCCCCCChHH--HHHHHHHH----HcCCCEEEEEECccchhhh-hhHHHHHHcCCCceEEee
Confidence            9999999999876443322  21233333    3578999999999997543 334566677777777776

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.83  E-value=1.9e-20  Score=133.64  Aligned_cols=126  Identities=19%  Similarity=0.134  Sum_probs=83.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccc---------c
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSS---------Y   81 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~---------~   81 (154)
                      ...++|+++|.+|+|||||+|++++..+....+..+.+.......+......+.+|||||...+......         .
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~  116 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL  116 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence            3579999999999999999999998886333333333322222333333457899999998765533221         1


Q ss_pred             ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcC-CCCCcEEEEEeCCCCCCchhh
Q 031704           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      .+.+|++++|+|++.. ++......|...+..... ....|+++|+||+|+..++..
T Consensus       117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~  172 (270)
T 1h65_A          117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGL  172 (270)
T ss_dssp             TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGC
T ss_pred             cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCC
Confidence            3468999999998753 344333336666655422 122699999999999766543

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.83  E-value=1e-20  Score=132.65  Aligned_cols=125  Identities=15%  Similarity=0.187  Sum_probs=76.7

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCC--cceeeeEEEEEEECCeEEEEEEEeCCCcc-----------c
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSP--TIGVDFKIKHVALGGKKMKLAIWDTAGQE-----------R   73 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----------~   73 (154)
                      .+....+||+++|.+|+|||||+|++++... ....+  +.+..........++.  .+.+|||||..           .
T Consensus        24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~  101 (239)
T 3lxx_A           24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKE  101 (239)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHHH
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHH
Confidence            3445679999999999999999999999887 33333  2333444445555553  67899999943           3


Q ss_pred             ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhh-hcCCCCCcEEEEEeCCCCCCchhh
Q 031704           74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDL-YSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        74 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      +........+.+|++++|+|+++....+.  . |...+.. .......|+++|+||+|+...+.+
T Consensus       102 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~--~-~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~  163 (239)
T 3lxx_A          102 IIRCILLTSPGPHALLLVVPLGRYTEEEH--K-ATEKILKMFGERARSFMILIFTRKDDLGDTNL  163 (239)
T ss_dssp             HHHHHHHTTTCCSEEEEEEETTCCSSHHH--H-HHHHHHHHHHHHHGGGEEEEEECGGGC-----
T ss_pred             HHHHHHhcCCCCcEEEEEeeCCCCCHHHH--H-HHHHHHHHhhhhccceEEEEEeCCccCCcccH
Confidence            33444455677899999999986544221  1 2222222 111124589999999999765543

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.83  E-value=3.7e-21  Score=137.45  Aligned_cols=112  Identities=21%  Similarity=0.195  Sum_probs=81.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc------cccccccc--
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR------TLTSSYYR--   83 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~--   83 (154)
                      .++|+++|++|+|||||+|+|.+... ....+  |.+.......+.. ...+.+|||||...+.      .....++.  
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~   79 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ   79 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence            58999999999999999999998764 33334  3334334444554 5678999999988775      23455554  


Q ss_pred             CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ++|++++|+|+++.++..   . |...+..    .+.|+++|+||+|+...+
T Consensus        80 ~~d~vi~V~D~t~~e~~~---~-~~~~l~~----~~~p~ilv~NK~Dl~~~~  123 (272)
T 3b1v_A           80 RADSILNVVDATNLERNL---Y-LTTQLIE----TGIPVTIALNMIDVLDGQ  123 (272)
T ss_dssp             CCSEEEEEEEGGGHHHHH---H-HHHHHHH----TCSCEEEEEECHHHHHHT
T ss_pred             CCCEEEEEecCCchHhHH---H-HHHHHHh----cCCCEEEEEEChhhCCcC
Confidence            699999999998865432   2 5445544    378999999999986443

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.83  E-value=1.6e-20  Score=134.08  Aligned_cols=114  Identities=21%  Similarity=0.152  Sum_probs=82.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--c
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT------LTSSYY--R   83 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~   83 (154)
                      .+||+++|++|+|||||+|++.+... ....+..+.+.....+..++.  .+.+|||||...+..      ....++  .
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            47999999999999999999998876 344455555555556666554  488999999887665      344444  6


Q ss_pred             CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ++|++++|+|+++.+.   ... |...+...   ...|+++|+||+|+...+
T Consensus        81 ~~d~vi~v~D~~~~~~---~~~-~~~~~~~~---~~~p~ilv~NK~Dl~~~~  125 (271)
T 3k53_A           81 NADVIVDIVDSTCLMR---NLF-LTLELFEM---EVKNIILVLNKFDLLKKK  125 (271)
T ss_dssp             CCSEEEEEEEGGGHHH---HHH-HHHHHHHT---TCCSEEEEEECHHHHHHH
T ss_pred             CCcEEEEEecCCcchh---hHH-HHHHHHhc---CCCCEEEEEEChhcCccc
Confidence            7999999999988532   223 33333332   238999999999986544

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.82  E-value=1.7e-20  Score=141.19  Aligned_cols=120  Identities=18%  Similarity=0.154  Sum_probs=81.6

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc-------cc
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL-------TS   79 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~   79 (154)
                      +....+||+++|..++|||||++++++..+.  ...+.++.+.....+...+.. .+.+|||||++.+...       ..
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~  108 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKAR  108 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHH
Confidence            4456799999999999999999999998863  233333444445555555442 7899999999877654       23


Q ss_pred             ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        80 ~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      .+++++|++++|+|+....   .... |...+...    +.|+++|+||+|+..++..
T Consensus       109 ~~l~~aD~vllVvD~~~~~---~~~~-~l~~l~~~----~~piIvV~NK~Dl~~~~~~  158 (423)
T 3qq5_A          109 RVFYRADCGILVTDSAPTP---YEDD-VVNLFKEM----EIPFVVVVNKIDVLGEKAE  158 (423)
T ss_dssp             HHHTSCSEEEEECSSSCCH---HHHH-HHHHHHHT----TCCEEEECCCCTTTTCCCT
T ss_pred             HHHhcCCEEEEEEeCCChH---HHHH-HHHHHHhc----CCCEEEEEeCcCCCCccHH
Confidence            4688899999999983322   2223 66666654    7899999999999876654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.82  E-value=2.5e-20  Score=141.17  Aligned_cols=119  Identities=20%  Similarity=0.154  Sum_probs=83.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCc----------ccccccc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ----------ERFRTLT   78 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~   78 (154)
                      +..+||+++|.+|+|||||+|++++....  ...+.++.+.....+..++.  .+.+|||||+          +.+....
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence            35699999999999999999999998762  33343333444445556665  4889999997          3333332


Q ss_pred             c-ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           79 S-SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        79 ~-~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      . .+++.+|++++|+|++++.+++.. . |...+..    .+.|+++|+||+|+.+.+..
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~-~~~~~~~----~~~~iiiv~NK~Dl~~~~~~  304 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-R-IAGYAHE----AGKAVVIVVNKWDAVDKDES  304 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-H-HHHHHHH----TTCEEEEEEECGGGSCCCTT
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-H-HHHHHHH----cCCcEEEEEECccCCCcchH
Confidence            2 467889999999999998887665 3 5555543    46899999999999876554

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.81  E-value=2.5e-20  Score=142.75  Aligned_cols=123  Identities=17%  Similarity=0.101  Sum_probs=82.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC------------------------------CCCCcceeeeEEEEEEECCeE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE------------------------------ELSPTIGVDFKIKHVALGGKK   60 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~   60 (154)
                      ...+||+++|.+++|||||+++|+.....                              ......|++.......+....
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            35699999999999999999999765210                              001112334444444444556


Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHH------HHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTN------LADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +.+.+|||||+++|...+..+++.+|++++|+|+++..++..      ... ....+...   ...|+++|+||+|+.+.
T Consensus       111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e-~~~~~~~~---~~~~iIvviNK~Dl~~~  186 (483)
T 3p26_A          111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKE-HMLLASSL---GIHNLIIAMNKMDNVDW  186 (483)
T ss_dssp             CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHH-HHHHHHHT---TCCCEEEEEECGGGGTT
T ss_pred             ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHH-HHHHHHHc---CCCcEEEEEECcCcccc
Confidence            789999999999999999999999999999999998654322      111 12222221   23469999999999874


Q ss_pred             hhh
Q 031704          135 WRL  137 (154)
Q Consensus       135 ~~~  137 (154)
                      ++.
T Consensus       187 ~~~  189 (483)
T 3p26_A          187 SQQ  189 (483)
T ss_dssp             CHH
T ss_pred             hHH
Confidence            433

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.81  E-value=1.9e-19  Score=130.37  Aligned_cols=134  Identities=21%  Similarity=0.137  Sum_probs=85.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCcceeeeEEEEEEECCeEEEEEEEeCCCcc---------cccccccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEEL--SPTIGVDFKIKHVALGGKKMKLAIWDTAGQE---------RFRTLTSS   80 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~   80 (154)
                      +..+|+++|++|+|||||+|++++.+....  .+.++.......+..+  ...+.+|||||..         .+......
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            456899999999999999999999876322  2222112222223333  3578899999987         34455567


Q ss_pred             cccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh---hhhhh-hhhccccccC
Q 031704           81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL---SGFWH-FLLSKFYCSS  154 (154)
Q Consensus        81 ~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~---~~~~~-~~~~~~~~~S  154 (154)
                      +++.+|++++|+|+++ -+  .......+.+.    ..+.|+++++||+|+...+....   .++.. +++..++|+|
T Consensus        85 ~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~----~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iS  155 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR-WT--PDDEMVLNKLR----EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPIS  155 (301)
T ss_dssp             CCCCEEEEEEEEETTC-CC--HHHHHHHHHHH----SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECC
T ss_pred             HHhcCCEEEEEEeCCC-CC--HHHHHHHHHHH----hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEE
Confidence            7899999999999977 22  22221222222    34689999999999986333222   22222 2334567776

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.81  E-value=1.9e-19  Score=135.09  Aligned_cols=124  Identities=15%  Similarity=0.074  Sum_probs=87.4

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEE-------EE---------EE---CCeEEEEEEEeCC
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIK-------HV---------AL---GGKKMKLAIWDTA   69 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~-------~~---------~~---~~~~~~~~i~D~~   69 (154)
                      .....+||+++|.+++|||||+++|++............+....       .+         ..   ......+.+||||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            34456899999999999999999999854422111111000000       00         00   1123689999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        70 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      |++.+...+...++.+|++++|+|+++..++..... |...+...   ...|+++|+||+|+.++.+
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~-~~~~~~~~---~~~~iivviNK~Dl~~~~~  146 (403)
T 3sjy_A           84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE-HFVALGII---GVKNLIIVQNKVDVVSKEE  146 (403)
T ss_dssp             CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHH-HHHHHHHH---TCCCEEEEEECGGGSCHHH
T ss_pred             CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHH-HHHHHHHc---CCCCEEEEEECccccchHH
Confidence            999999999999999999999999998776666666 55555544   2258999999999987654

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.81  E-value=6.1e-20  Score=134.84  Aligned_cols=119  Identities=21%  Similarity=0.197  Sum_probs=86.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----ccccccccc---cCcc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----FRTLTSSYY---RGAQ   86 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~---~~~~   86 (154)
                      +|+++|.++||||||++++.+.+. ...++.++.......+.+++ ...+.+|||||..+    +..+...++   .+++
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d  238 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR  238 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence            588999999999999999998765 33344344344444555553 23689999999532    333434444   4599


Q ss_pred             EEEEEEECCC---cchHHHHHHHHHHHHhhhcC-CCCCcEEEEEeCCCCCCch
Q 031704           87 GIIMVYDVTR---RDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        87 ~~v~v~d~~~---~~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ++++|+|+++   +++++.+.. |...+..+.. ..+.|+++|+||+|+..++
T Consensus       239 ~ll~VvD~s~~~~~~~~~~~~~-~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~  290 (342)
T 1lnz_A          239 VIVHVIDMSGLEGRDPYDDYLT-INQELSEYNLRLTERPQIIVANKMDMPEAA  290 (342)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHH-HHHHHHHSCSSTTTSCBCBEEECTTSTTHH
T ss_pred             EEEEEEECCcccccChHHHHHH-HHHHHHHhhhhhcCCCEEEEEECccCCCCH
Confidence            9999999998   788888877 8878777532 3578999999999998654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.80  E-value=4.8e-19  Score=134.17  Aligned_cols=120  Identities=17%  Similarity=0.151  Sum_probs=83.3

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCC--CC----------------------------CCCcceeeeEEEEEEECC
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EE----------------------------LSPTIGVDFKIKHVALGG   58 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~--~~----------------------------~~~~~~~~~~~~~~~~~~   58 (154)
                      +....++|+++|.+++|||||+++|+...-  ..                            .....|.+.......+..
T Consensus        13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~   92 (439)
T 3j2k_7           13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET   92 (439)
T ss_pred             CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence            445679999999999999999999965421  00                            001123444444444444


Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcch---HH---HHHHHHHHHHhhhcCCCCCc-EEEEEeCCCC
Q 031704           59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT---FT---NLADIWAKEIDLYSTNQDCI-KLLVGNKVDK  131 (154)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl  131 (154)
                      ....+.+|||||+++|...+...++.+|++++|+|+++...   ++   .... ....+..    .+.| +++++||+|+
T Consensus        93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e-~l~~~~~----~~v~~iIvviNK~Dl  167 (439)
T 3j2k_7           93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE-HAMLAKT----AGVKHLIVLINKMDD  167 (439)
T ss_pred             CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHH-HHHHHHH----cCCCeEEEEeecCCC
Confidence            55689999999999999988889999999999999998642   11   1122 1122222    2455 8999999999


Q ss_pred             CC
Q 031704          132 VC  133 (154)
Q Consensus       132 ~~  133 (154)
                      ..
T Consensus       168 ~~  169 (439)
T 3j2k_7          168 PT  169 (439)
T ss_pred             cc
Confidence            54

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.80  E-value=1.4e-19  Score=137.70  Aligned_cols=123  Identities=20%  Similarity=0.150  Sum_probs=84.8

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG----------QERFRTL   77 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~   77 (154)
                      ....+||+++|.+++|||||+|++++...  ....+.++.+.....+..++.  .+.+|||||          ++.+...
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~  269 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL  269 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence            34578999999999999999999998764  333444444443445556655  688999999          5555554


Q ss_pred             cc-ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhh
Q 031704           78 TS-SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLS  140 (154)
Q Consensus        78 ~~-~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~  140 (154)
                      .. .+++.+|++++|+|+++..+... .. |...+..    .+.|+++|+||+|+.+++....+
T Consensus       270 ~~~~~~~~ad~~llviD~~~~~~~~~-~~-~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~  327 (456)
T 4dcu_A          270 RALKAIDRSEVVAVVLDGEEGIIEQD-KR-IAGYAHE----AGKAVVIVVNKWDAVDKDESTMK  327 (456)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHH-HH-HHHHHHH----TTCEEEEEEECGGGSCCCSSHHH
T ss_pred             HHHHHHhhCCEEEEEEeCCCCcCHHH-HH-HHHHHHH----cCCCEEEEEEChhcCCCchHHHH
Confidence            43 36788999999999988544222 22 4445444    46899999999999876655433

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.78  E-value=8.8e-19  Score=125.26  Aligned_cols=121  Identities=22%  Similarity=0.310  Sum_probs=75.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCC--------CCcceeeeEEEEEEECCeEEEEEEEeCCCccc-------c
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EEL--------SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-------F   74 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~   74 (154)
                      ...++|+++|.+|+|||||+|++++... ...        .++.+.+.....+..++..+.+.+|||||...       +
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence            3569999999999999999999887765 222        34444455555555556667999999999632       2


Q ss_pred             cccc-------cccc-------------cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           75 RTLT-------SSYY-------------RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        75 ~~~~-------~~~~-------------~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      ..+.       ..++             .++|+++++++.+.... ......+.+.+..     ..|+++|+||+|+...
T Consensus        86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~-~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~  159 (274)
T 3t5d_A           86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGL-KPLDIEFMKRLHE-----KVNIIPLIAKADTLTP  159 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSC-CHHHHHHHHHHTT-----TSCEEEEESSGGGSCH
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCC-CHHHHHHHHHHhc-----cCCEEEEEeccCCCCH
Confidence            2111       1112             23789999998765322 2222213334332     7899999999999765


Q ss_pred             hhh
Q 031704          135 WRL  137 (154)
Q Consensus       135 ~~~  137 (154)
                      .+.
T Consensus       160 ~e~  162 (274)
T 3t5d_A          160 EEC  162 (274)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.78  E-value=5.8e-19  Score=137.72  Aligned_cols=118  Identities=24%  Similarity=0.252  Sum_probs=81.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC--C------------CCCCcceeeeEEEEEEE-----CCeEEEEEEEeCCCcc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--E------------ELSPTIGVDFKIKHVAL-----GGKKMKLAIWDTAGQE   72 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~--~------------~~~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~~   72 (154)
                      ...||+++|+.++|||||+++|+...-  .            ......|++.......+     ++..+.+++|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            468999999999999999999986321  0            00112334443322222     5667899999999999


Q ss_pred             cccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        73 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      +|...+...++.+|++++|+|+++..+...... |.....     .+.|+++|+||+|+..++
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~-~~~~~~-----~~ipiIvViNKiDl~~a~  139 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLAN-CYTAME-----MDLEVVPVLNKIDLPAAD  139 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHH-HHHHHH-----TTCEEEEEEECTTSTTCC
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHHH-----CCCCEEEeeeccCccccc
Confidence            999989999999999999999999877666655 655443     367999999999997654

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.78  E-value=1.4e-19  Score=141.84  Aligned_cols=124  Identities=19%  Similarity=0.123  Sum_probs=81.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC------------------------------cceeeeEEEEEEECCeE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP------------------------------TIGVDFKIKHVALGGKK   60 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~   60 (154)
                      ...+||+++|.+++|||||+++|++........                              ..|++.......+....
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            346899999999999999999998764311110                              12333332333333345


Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCCcch---HHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT---FTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      +.+.+|||||++.+...+..+++.+|++|+|+|+++...   +....+ +.+.+.........|++||+||+|+.+.+
T Consensus       245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~q-t~e~l~~~~~lgi~~iIVVvNKiDl~~~~  321 (611)
T 3izq_1          245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQ-TKEHMLLASSLGIHNLIIAMNKMDNVDWS  321 (611)
T ss_dssp             CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSH-HHHHHHHHHTTTCCEEEEEEECTTTTTTC
T ss_pred             ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhH-HHHHHHHHHHcCCCeEEEEEecccccchh
Confidence            678999999999999989999999999999999987421   000011 11111111112234699999999998743

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.78  E-value=4.3e-19  Score=137.01  Aligned_cols=122  Identities=17%  Similarity=0.113  Sum_probs=81.9

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-C--------------------CCCCcceeeeEEEEEEECCeEEEEEEEe
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-E--------------------ELSPTIGVDFKIKHVALGGKKMKLAIWD   67 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D   67 (154)
                      ...+..+|+++|++++|||||+++|+...- .                    ......+.+.......+....+.+++||
T Consensus         9 ~~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liD   88 (529)
T 2h5e_A            9 EVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLD   88 (529)
T ss_dssp             HHHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEEC
T ss_pred             hhcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEE
Confidence            334679999999999999999999986321 0                    0001222222222222222346799999


Q ss_pred             CCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        68 ~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      |||+..|......+++.+|++++|+|+++..... ... +...+    ...+.|+++|+||+|+.....
T Consensus        89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~-~~~~~----~~~~ipiivviNK~Dl~~~~~  151 (529)
T 2h5e_A           89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRK-LMEVT----RLRDTPILTFMNKLDRDIRDP  151 (529)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHH-HHHHH----TTTTCCEEEEEECTTSCCSCH
T ss_pred             CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHH-HHHHH----HHcCCCEEEEEcCcCCccccH
Confidence            9999999988888999999999999998864322 222 22222    345789999999999976543

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.77  E-value=6.3e-18  Score=119.76  Aligned_cols=120  Identities=16%  Similarity=0.152  Sum_probs=75.6

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-C-CCCCc-ceeeeEEEEEEECCeEEEEEEEeCCCcccccccc--------
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-E-ELSPT-IGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLT--------   78 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~-~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------   78 (154)
                      ....++|+++|.+|+|||||++++++... . ...++ .+.+........++  ..+.+|||||...+....        
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence            44569999999999999999999998874 2 22333 33334444444544  468899999976553322        


Q ss_pred             ---cccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcC-CCCCcEEEEEe-CCCCCCc
Q 031704           79 ---SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGN-KVDKVCP  134 (154)
Q Consensus        79 ---~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~n-K~Dl~~~  134 (154)
                         ..+++.+|++++|+|+++....+.  . +...+..... ....|.++|+| |+|+...
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~~~~~~~--~-~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~  154 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGRYTSQDQ--Q-AAQRVKEIFGEDAMGHTIVLFTHKEDLNGG  154 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTCCCHHHH--H-HHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred             HHHHhcCCCCcEEEEEEeCCCCCHHHH--H-HHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence               225788999999999986332221  1 2223332211 11345566666 9999754

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.77  E-value=1.6e-18  Score=135.11  Aligned_cols=119  Identities=24%  Similarity=0.290  Sum_probs=84.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCC--CCC------C------CCcceeeeE----EEEEEE-CCeEEEEEEEeCCCc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDT--FEE------L------SPTIGVDFK----IKHVAL-GGKKMKLAIWDTAGQ   71 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~--~~~------~------~~~~~~~~~----~~~~~~-~~~~~~~~i~D~~g~   71 (154)
                      +...+|+++|+.++|||||+++|+...  ...      .      ....|++..    ...+.. ++..+.+++|||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            457899999999999999999997531  110      0      011222221    112221 556789999999999


Q ss_pred             ccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        72 ~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      .+|.......++.+|++++|+|+++..+...... |.....     .+.|+++|+||+|+..++
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~-~~~a~~-----~~ipiIvviNKiDl~~a~  141 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVAN-FWKAVE-----QDLVIIPVINKIDLPSAD  141 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHH-HHHHHH-----TTCEEEEEEECTTSTTCC
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHH-HHHHHH-----CCCCEEEEEeccCccccC
Confidence            9999888888999999999999999887766665 654432     368899999999997654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.77  E-value=7.6e-18  Score=124.57  Aligned_cols=122  Identities=20%  Similarity=0.153  Sum_probs=84.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc---------cccc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT---------LTSS   80 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~   80 (154)
                      ...++++++|.+|+|||||++++.+... ....+..+.......+...  ...+.+|||||......         ....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            3567999999999999999999998875 2222332223333333333  35689999999754221         1122


Q ss_pred             cccCccEEEEEEECCCcc--hHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           81 YYRGAQGIIMVYDVTRRD--TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        81 ~~~~~~~~v~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      ....+|++++|+|+++..  +++.... |...+.....  +.|+++|+||+|+.....+
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~-~~~~i~~~~~--~~piilV~NK~Dl~~~~~~  298 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIH-LFEEVHGEFK--DLPFLVVINKIDVADEENI  298 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHH-HHHHHHHHTT--TSCEEEEECCTTTCCHHHH
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHH-HHHHHHHhcC--CCCEEEEEECcccCChHHH
Confidence            344689999999998876  6666666 7766665422  7899999999999876554

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.77  E-value=7.4e-19  Score=133.66  Aligned_cols=116  Identities=22%  Similarity=0.253  Sum_probs=75.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TSSY   81 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   81 (154)
                      ..+||+++|.+|+|||||+|+|++.+.  ....+.++.+.....+.+++  ..+.+|||||...+...        ...+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            458999999999999999999998765  23334443333334455565  45789999997554332        2335


Q ss_pred             ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      ++.+|++++|+|++++.+... .. |.+.+.      ..|+++|+||+|+......
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~-i~~~l~------~~piivV~NK~Dl~~~~~~  348 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QE-IYEQVK------HRPLILVMNKIDLVEKQLI  348 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HH-HHHHHT------TSCEEEEEECTTSSCGGGS
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HH-HHHhcc------CCcEEEEEECCCCCcchhh
Confidence            788999999999998766544 22 444432      2689999999999766544

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.77  E-value=6e-18  Score=128.06  Aligned_cols=120  Identities=21%  Similarity=0.155  Sum_probs=81.7

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC---CC----------CCCc-------------------ceeeeEEEEEEEC
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF---EE----------LSPT-------------------IGVDFKIKHVALG   57 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~---~~----------~~~~-------------------~~~~~~~~~~~~~   57 (154)
                      ....+||+++|..++|||||+++|+....   ..          ...+                   .+++.......+.
T Consensus        21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~  100 (434)
T 1zun_B           21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS  100 (434)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence            35679999999999999999999986541   00          0011                   1222222223333


Q ss_pred             CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           58 GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      .....+.+|||||+++|...+..+++.+|++++|+|+++..... ... |...+...   ...|+++|+||+|+.+.
T Consensus       101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~-~l~~~~~~---~~~~iIvviNK~Dl~~~  172 (434)
T 1zun_B          101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRR-HSYIASLL---GIKHIVVAINKMDLNGF  172 (434)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHH-HHHHHHHT---TCCEEEEEEECTTTTTS
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHH-HHHHHHHc---CCCeEEEEEEcCcCCcc
Confidence            34467899999999999888888899999999999999865332 233 33333332   22369999999999863

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.77  E-value=6.8e-19  Score=134.42  Aligned_cols=112  Identities=25%  Similarity=0.240  Sum_probs=83.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc-cccc--------ccccc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE-RFRT--------LTSSY   81 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~~   81 (154)
                      .++|+++|.+|+|||||+|+|.+.+.  ....+.++.+.....+.+++.  .+.+|||||.. .+..        ....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            38999999999999999999998864  344455554555566666654  58899999987 5432        13456


Q ss_pred             ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      ++.+|++++|+|++++.+++...- | +.+      .+.|+++|+||+|+..+
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~i-l-~~l------~~~piivV~NK~DL~~~  365 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRKI-L-ERI------KNKRYLVVINKVDVVEK  365 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHHH-H-HHH------TTSSEEEEEEECSSCCC
T ss_pred             hhcccEEEEEecCCCCCCHHHHHH-H-HHh------cCCCEEEEEECcccccc
Confidence            788999999999999877765322 2 222      36799999999999754

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.76  E-value=2.5e-18  Score=128.82  Aligned_cols=116  Identities=18%  Similarity=0.117  Sum_probs=82.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCC-------CCC--------CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDT-------FEE--------LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT   76 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~-------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   76 (154)
                      ..+||+++|+.++|||||+++|++..       +..        .....+.+.......+......+.+|||||+++|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            35899999999999999999998741       110        001233444444444444456789999999999888


Q ss_pred             cccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCc-EEEEEeCCCCCC
Q 031704           77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKVC  133 (154)
Q Consensus        77 ~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl~~  133 (154)
                      .+...++.+|++++|+|+++....+.... | ..+..    .+.| +++++||+|+.+
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~-l-~~~~~----~~vp~iivviNK~Dl~~  133 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTREH-L-LLARQ----IGVEHVVVYVNKADAVQ  133 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHHHH-H-HHHHH----TTCCCEEEEEECGGGCS
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHHHH-H-HHHHH----cCCCeEEEEEECcccCC
Confidence            88888999999999999998654333322 3 33333    2567 789999999985

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.76  E-value=1.1e-18  Score=130.94  Aligned_cols=118  Identities=18%  Similarity=0.131  Sum_probs=84.7

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcC--------CCCCC--------CCcceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSD--------TFEEL--------SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER   73 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   73 (154)
                      ....++|+++|++++|||||+++|.+.        .+..+        ....+.+.......+......+.+|||||+++
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            346699999999999999999999873        21111        01233344334444444456789999999999


Q ss_pred             ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCc-EEEEEeCCCCCC
Q 031704           74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKVC  133 (154)
Q Consensus        74 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl~~  133 (154)
                      |.......++.+|++++|+|+++.... .... |...+...    +.| +++++||+|+..
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~-~l~~~~~~----~ip~iivviNK~Dl~~  142 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMP-QTRE-HILLARQV----GVPYIVVFMNKVDMVD  142 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCH-HHHH-HHHHHHHT----TCCCEEEEEECGGGCC
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcH-HHHH-HHHHHHHc----CCCEEEEEEECccccC
Confidence            988888889999999999999986543 3334 44444432    567 889999999985

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.76  E-value=2.6e-17  Score=123.64  Aligned_cols=122  Identities=17%  Similarity=0.141  Sum_probs=79.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC----CCCCC--cceeeeEEEEEEE-------------C--C----eEEEEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF----EELSP--TIGVDFKIKHVAL-------------G--G----KKMKLAI   65 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~----~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~i   65 (154)
                      ...++|+++|+.++|||||+++|.+...    .+..+  +....+....+..             +  +    ....+.+
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            4569999999999999999999985432    12122  2222233222211             1  1    2378999


Q ss_pred             EeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           66 WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        66 ~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      |||||++.|...+...+..+|++++|+|+++........+ ....+...   ...|+++++||+|+.++.+
T Consensus        86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e-~l~~~~~l---~~~~iivv~NK~Dl~~~~~  152 (408)
T 1s0u_A           86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKE-HLMALEIL---GIDKIIIVQNKIDLVDEKQ  152 (408)
T ss_dssp             EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHH-HHHHHHHT---TCCCEEEEEECTTSSCTTT
T ss_pred             EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHH-HHHHHHHc---CCCeEEEEEEccCCCCHHH
Confidence            9999999998887777888999999999996431111122 11122222   2347999999999976543

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.76  E-value=3.8e-19  Score=137.18  Aligned_cols=119  Identities=15%  Similarity=0.109  Sum_probs=83.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCC------------------CCCC---CCcceeeeEEEEEEECCeEEEEEEEeCC
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDT------------------FEEL---SPTIGVDFKIKHVALGGKKMKLAIWDTA   69 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~   69 (154)
                      .+..+|+++|.+++|||||+++|+...                  ....   ....+.+.......+....+.+++||||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP   90 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP   90 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence            456899999999999999999997211                  1000   0011222222222222234679999999


Q ss_pred             CcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        70 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      |+.++......+++.+|++|+|+|+++..+...... |.. +.    ..+.|+++|+||+|+....
T Consensus        91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~-~~~-~~----~~~iPiivviNK~Dl~~~~  150 (528)
T 3tr5_A           91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKL-MEV-CR----LRHTPIMTFINKMDRDTRP  150 (528)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHH-HHH-HH----TTTCCEEEEEECTTSCCSC
T ss_pred             CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHH-HH----HcCCCEEEEEeCCCCcccc
Confidence            999999999999999999999999998766655443 433 22    2368999999999997544

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.75  E-value=8.1e-18  Score=127.51  Aligned_cols=118  Identities=25%  Similarity=0.230  Sum_probs=77.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc-----------
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL-----------   77 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------   77 (154)
                      ...+|++++|++|+|||||+|++++...  ....+.++.+.....+.+++.  .+.+|||+|.......           
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence            3468999999999999999999998875  233333333344455666765  5678999997432221           


Q ss_pred             -ccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           78 -TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        78 -~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                       ...+++.+|++++++|+++..+.... . +...+..    .+.|+++|+||+|+.+.+.
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~-i~~~l~~----~~~~~ilv~NK~Dl~~~~~  309 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQ-R-MAGLMER----RGRASVVVFNKWDLVVHRE  309 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-H-HHHHHHH----TTCEEEEEEECGGGSTTGG
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHH-H-HHHHHHH----cCCCEEEEEECccCCCchh
Confidence             12346778999999999987665442 1 2233332    4789999999999986554

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.75  E-value=3.5e-19  Score=134.86  Aligned_cols=120  Identities=20%  Similarity=0.207  Sum_probs=79.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC--CCCCCC----------------------------CcceeeeEEEEEEECCeEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSD--TFEELS----------------------------PTIGVDFKIKHVALGGKKM   61 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~--~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~   61 (154)
                      ..+||+++|..++|||||+++|+..  .+....                            ...+.+.......+.....
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~   84 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   84 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence            5689999999999999999999864  221100                            0122333333333444456


Q ss_pred             EEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhc---CCCC-CcEEEEEeCCCCCC
Q 031704           62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYS---TNQD-CIKLLVGNKVDKVC  133 (154)
Q Consensus        62 ~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~-~~~ivv~nK~Dl~~  133 (154)
                      .+.+|||||+++|...+..+++.+|++++|+|+++ .+|+.... |..+.+.+.   ...+ .++++++||+|+.+
T Consensus        85 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~-~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~  158 (435)
T 1jny_A           85 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMS-VEGQTREHIILAKTMGLDQLIVAVNKMDLTE  158 (435)
T ss_dssp             EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHS-TTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred             EEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Cccccccc-cchHHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence            79999999999999888889999999999999998 66764433 221111110   1123 46899999999976

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.75  E-value=2.1e-18  Score=127.69  Aligned_cols=123  Identities=25%  Similarity=0.371  Sum_probs=69.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCC---------CCcceeeeEEEEEEECCeEEEEEEEeCCCc-------cc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EEL---------SPTIGVDFKIKHVALGGKKMKLAIWDTAGQ-------ER   73 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~   73 (154)
                      ...++|+++|++|+|||||++++++... ...         .++.+.......+..++..+.+.+|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            3568999999999999999999876543 211         133333333333444566778999999998       55


Q ss_pred             cccccc-------ccccCccE-----------EEEEEECCC-cchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           74 FRTLTS-------SYYRGAQG-----------IIMVYDVTR-RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        74 ~~~~~~-------~~~~~~~~-----------~v~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +..+..       .+++.+++           .+++|++++ ..++..+...|...+     ..+.|+++|+||+|+..+
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~~  189 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLTL  189 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCCH
Confidence            665554       44443322           234444443 344555443344433     256899999999999877


Q ss_pred             hhhh
Q 031704          135 WRLF  138 (154)
Q Consensus       135 ~~~~  138 (154)
                      +++.
T Consensus       190 ~ev~  193 (361)
T 2qag_A          190 KERE  193 (361)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6653

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.75  E-value=1.3e-18  Score=132.63  Aligned_cols=122  Identities=18%  Similarity=0.158  Sum_probs=66.9

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCC--CCC----------------------C------CCcceeeeEEEEEEECCe
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDT--FEE----------------------L------SPTIGVDFKIKHVALGGK   59 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~--~~~----------------------~------~~~~~~~~~~~~~~~~~~   59 (154)
                      ....++|+++|+.++|||||+++|+...  +..                      .      ....+.|.......+...
T Consensus        40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~  119 (467)
T 1r5b_A           40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  119 (467)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence            3567999999999999999999997421  100                      0      001222222222122222


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEECCCcc---hHHHHHHHHHHHHhhhcCCCCCc-EEEEEeCCCCCC
Q 031704           60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKVC  133 (154)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl~~  133 (154)
                      ...+.+|||||+++|...+...++.+|++++|+|+++..   +|+...+ |.+.+... ...+.| +++++||+|+..
T Consensus       120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~q-t~e~l~~~-~~~~vp~iivviNK~Dl~~  195 (467)
T 1r5b_A          120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQ-TREHAVLA-RTQGINHLVVVINKMDEPS  195 (467)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCC-HHHHHHHH-HHTTCSSEEEEEECTTSTT
T ss_pred             CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCc-HHHHHHHH-HHcCCCEEEEEEECccCCC
Confidence            357899999999999988888899999999999999863   2221111 22222211 123565 999999999964

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.75  E-value=1.5e-17  Score=125.01  Aligned_cols=124  Identities=18%  Similarity=0.162  Sum_probs=81.7

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCC---C-CCCC--cceeeeEEEEEEE-------------C--C----eEEEE
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF---E-ELSP--TIGVDFKIKHVAL-------------G--G----KKMKL   63 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~---~-~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~   63 (154)
                      .....++|+++|+.++|||||+++|.+...   . +..+  +....+....+..             +  +    ....+
T Consensus         6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   85 (410)
T 1kk1_A            6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   85 (410)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence            345779999999999999999999985432   1 1112  2222232222211             0  1    13689


Q ss_pred             EEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           64 AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        64 ~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      .+|||||++.|.......+..+|++++|+|+++........+ ....+...   ...|+++|+||+|+.++..
T Consensus        86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e-~l~~~~~~---~~~~iivviNK~Dl~~~~~  154 (410)
T 1kk1_A           86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTRE-HLMALQII---GQKNIIIAQNKIELVDKEK  154 (410)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHH-HHHHHHHH---TCCCEEEEEECGGGSCHHH
T ss_pred             EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHH-HHHHHHHc---CCCcEEEEEECccCCCHHH
Confidence            999999999988877777888999999999996431112222 11122222   2357999999999987653

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.75  E-value=7.2e-20  Score=141.07  Aligned_cols=117  Identities=18%  Similarity=0.138  Sum_probs=84.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      +.++|+++|++++|||||+++|.+..+ ....++.+.+.....+..+ ....+.+|||||++.|..++..+++.+|++++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            347899999999999999999997766 2333333322222222221 12368899999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      |+|+++......... | ..+    ...+.|+++++||+|+.+..
T Consensus        82 VVDa~dg~~~qt~e~-l-~~~----~~~~vPiIVViNKiDl~~~~  120 (537)
T 3izy_P           82 VVAADDGVMKQTVES-I-QHA----KDAHVPIVLAINKCDKAEAD  120 (537)
T ss_dssp             ECBSSSCCCHHHHHH-H-HHH----HTTTCCEEECCBSGGGTTTS
T ss_pred             EEECCCCccHHHHHH-H-HHH----HHcCCcEEEEEecccccccc
Confidence            999998665544333 2 222    23467999999999997543

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.75  E-value=1.3e-17  Score=127.67  Aligned_cols=119  Identities=17%  Similarity=0.105  Sum_probs=80.1

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCC----C----CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccc
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDT----F----EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSS   80 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   80 (154)
                      ..-+.++|+++|..++|||||+++|.+..    .    .+..+..+.+.....+..++  ..+.+|||||++++...+..
T Consensus        15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~   92 (482)
T 1wb1_A           15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVS   92 (482)
T ss_dssp             CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHH
T ss_pred             hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHH
Confidence            33467999999999999999999999876    1    11111112122222333443  57899999999999888888


Q ss_pred             cccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        81 ~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      .++.+|++++|+|+++...-.. .+ +...+..    .+.|+++|+||+|+.++.
T Consensus        93 ~~~~aD~~ilVvda~~g~~~qt-~e-~l~~~~~----~~ip~IvviNK~Dl~~~~  141 (482)
T 1wb1_A           93 AADIIDLALIVVDAKEGPKTQT-GE-HMLILDH----FNIPIIVVITKSDNAGTE  141 (482)
T ss_dssp             HTTSCCEEEEEEETTTCSCHHH-HH-HHHHHHH----TTCCBCEEEECTTSSCHH
T ss_pred             HHhhCCEEEEEEecCCCccHHH-HH-HHHHHHH----cCCCEEEEEECCCcccch
Confidence            8999999999999987322111 11 1222222    257789999999998654

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.74  E-value=5.8e-19  Score=134.38  Aligned_cols=117  Identities=16%  Similarity=0.145  Sum_probs=78.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCC--CCCC----------------------------CCcceeeeEEEEEEECCeEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDT--FEEL----------------------------SPTIGVDFKIKHVALGGKKM   61 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~--~~~~----------------------------~~~~~~~~~~~~~~~~~~~~   61 (154)
                      ..++|+++|.+++|||||+++|++..  +...                            ....+.+.......+.....
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~   85 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   85 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence            56999999999999999999998641  1100                            00112222222223333456


Q ss_pred             EEEEEeCCCcccccccccccccCccEEEEEEECCCcch---HH---HHHHHHHHHHhhhcCCCCC-cEEEEEeCCCCCC
Q 031704           62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT---FT---NLADIWAKEIDLYSTNQDC-IKLLVGNKVDKVC  133 (154)
Q Consensus        62 ~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~-~~ivv~nK~Dl~~  133 (154)
                      .+.+|||||+++|...+...++.+|++++|+|+++...   |+   .... +...+..    .+. ++++|+||+|+.+
T Consensus        86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~-~~~~~~~----~~v~~iivviNK~Dl~~  159 (458)
T 1f60_A           86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAFT----LGVRQLIVAVNKMDSVK  159 (458)
T ss_dssp             EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHHH----TTCCEEEEEEECGGGGT
T ss_pred             eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHH-HHHHHHH----cCCCeEEEEEEcccccc
Confidence            79999999999999888888999999999999987531   21   2222 2222222    244 4899999999974

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.74  E-value=2.3e-17  Score=122.17  Aligned_cols=116  Identities=21%  Similarity=0.156  Sum_probs=79.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc---------cccccccccccC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE---------RFRTLTSSYYRG   84 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~~~~   84 (154)
                      .++++|.+|+|||||+|++.+... ....+..+.+.....+.+++  ..+.+|||+|..         .+.... ..++.
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~  257 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKY  257 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHh
Confidence            499999999999999999998876 22333334345556677777  467899999962         122222 24678


Q ss_pred             ccEEEEEEECCCcc--hHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           85 AQGIIMVYDVTRRD--TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        85 ~~~~v~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      +|++++|+|++++.  ..+.... |.+.+... ...+.|+++|+||+|+....
T Consensus       258 aD~il~VvD~s~~~~~~~~~~~~-~~~~L~~l-~~~~~p~ilV~NK~Dl~~~~  308 (364)
T 2qtf_A          258 SDALILVIDSTFSENLLIETLQS-SFEILREI-GVSGKPILVTLNKIDKINGD  308 (364)
T ss_dssp             SSEEEEEEETTSCHHHHHHHHHH-HHHHHHHH-TCCSCCEEEEEECGGGCCSC
T ss_pred             CCEEEEEEECCCCcchHHHHHHH-HHHHHHHh-CcCCCCEEEEEECCCCCCch
Confidence            99999999999876  4444444 66666654 44578999999999997543

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.73  E-value=1.9e-17  Score=120.64  Aligned_cols=75  Identities=16%  Similarity=0.159  Sum_probs=62.5

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEECC----------CcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCC
Q 031704           60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT----------RRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV  129 (154)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~  129 (154)
                      .+.+.+|||+|++.++..|..++++++++++|+|++          +..++..... |+..+.......+.|++|++||+
T Consensus       166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~-~~~~i~~~~~~~~~~iiL~~NK~  244 (327)
T 3ohm_A          166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSSVILFLNKK  244 (327)
T ss_dssp             TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHH-HHHHHHTSGGGTTCEEEEEEECH
T ss_pred             ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHH-HHHHHhhhhccCCceEEEEEECc
Confidence            478999999999999999999999999999999654          6777888777 55555544345678999999999


Q ss_pred             CCCCch
Q 031704          130 DKVCPW  135 (154)
Q Consensus       130 Dl~~~~  135 (154)
                      |+..++
T Consensus       245 DL~~~k  250 (327)
T 3ohm_A          245 DLLEEK  250 (327)
T ss_dssp             HHHHHH
T ss_pred             hhhhhh
Confidence            997554

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.73  E-value=1.8e-17  Score=131.54  Aligned_cols=122  Identities=18%  Similarity=0.208  Sum_probs=84.3

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCC--CC------------CC---CCcceeeeEEEEEEECCeEEEEEEEeCCC
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDT--FE------------EL---SPTIGVDFKIKHVALGGKKMKLAIWDTAG   70 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~--~~------------~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   70 (154)
                      .......+|+++|.+++|||||+++|+...  ..            ..   ....+.+.......+....+.+++|||||
T Consensus         7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG   86 (691)
T 1dar_A            7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPG   86 (691)
T ss_dssp             CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCS
T ss_pred             CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcC
Confidence            344577999999999999999999998421  10            00   00112222222222222246799999999


Q ss_pred             cccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      +.++......+++.+|++++|+|+++..+...... |... ..    .+.|+++|+||+|+....
T Consensus        87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~-~~~~-~~----~~~p~ivviNKiD~~~~~  145 (691)
T 1dar_A           87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQA-EK----YKVPRIAFANKMDKTGAD  145 (691)
T ss_dssp             STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHH-HH----TTCCEEEEEECTTSTTCC
T ss_pred             ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHH-HHHH-HH----cCCCEEEEEECCCcccCC
Confidence            99999888999999999999999999877665544 5543 22    378999999999997654

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.73  E-value=6.7e-18  Score=125.30  Aligned_cols=105  Identities=9%  Similarity=0.069  Sum_probs=75.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   94 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~   94 (154)
                      +|+++|.+++|||||+++|+         ..+.+.......+......+.+|||||+++|.......++.+|++++|+| 
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred             EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence            99999999999999999998         12222222223344344579999999999998777778899999999999 


Q ss_pred             CCcchHHHHHHHHHHHHhhhcCCCCCcE-EEEEe-CCCCCCchh
Q 031704           95 TRRDTFTNLADIWAKEIDLYSTNQDCIK-LLVGN-KVDKVCPWR  136 (154)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~-ivv~n-K~Dl~~~~~  136 (154)
                      +. ..+....+ |...+...    +.|. ++++| |+|+ +++.
T Consensus        93 ~~-g~~~qt~e-~~~~~~~~----~i~~~ivvvNNK~Dl-~~~~  129 (370)
T 2elf_A           93 PQ-GLDAHTGE-CIIALDLL----GFKHGIIALTRSDST-HMHA  129 (370)
T ss_dssp             TT-CCCHHHHH-HHHHHHHT----TCCEEEEEECCGGGS-CHHH
T ss_pred             CC-CCcHHHHH-HHHHHHHc----CCCeEEEEEEeccCC-CHHH
Confidence            54 33444444 44444433    4566 88899 9999 5543

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.72  E-value=7.3e-18  Score=124.27  Aligned_cols=74  Identities=18%  Similarity=0.174  Sum_probs=63.2

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEECCC----------cchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCC
Q 031704           60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----------RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV  129 (154)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~  129 (154)
                      .+.+.+|||+|++.++..|..++++++++|+|+|+++          ..+++.... |+..+.......+.|++|++||+
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~-~~~~i~~~~~~~~~piiLv~NK~  270 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMK-LFDSICNNKWFTDTSIILFLNKK  270 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEEECH
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHH-HHHHHHcCccccCCcEEEEEECc
Confidence            5789999999999999999999999999999999999          567888887 66666554345679999999999


Q ss_pred             CCCCc
Q 031704          130 DKVCP  134 (154)
Q Consensus       130 Dl~~~  134 (154)
                      |+..+
T Consensus       271 DL~~~  275 (353)
T 1cip_A          271 DLFEE  275 (353)
T ss_dssp             HHHHH
T ss_pred             Cchhh
Confidence            99643

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.72  E-value=4.2e-18  Score=124.58  Aligned_cols=76  Identities=21%  Similarity=0.226  Sum_probs=64.4

Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEECC----------CcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeC
Q 031704           59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT----------RRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK  128 (154)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK  128 (154)
                      +.+.+.+||++|++.++..|..+++.++++|+|+|++          +..++..... |+..+.......+.|++|++||
T Consensus       159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~-~~~~i~~~~~~~~~piiLv~NK  237 (340)
T 4fid_A          159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIA-VFKDIMTNEFLKGAVKLIFLNK  237 (340)
T ss_dssp             SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHH-HHHHHHHCGGGTTSEEEEEEEC
T ss_pred             eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHH-HHHHHhhhhccCCCeEEEEEEC
Confidence            4578999999999999999999999999999999998          7788888888 5555554435568899999999


Q ss_pred             CCCCCch
Q 031704          129 VDKVCPW  135 (154)
Q Consensus       129 ~Dl~~~~  135 (154)
                      +|+..++
T Consensus       238 ~DL~~ek  244 (340)
T 4fid_A          238 MDLFEEK  244 (340)
T ss_dssp             HHHHHHH
T ss_pred             chhhhhh
Confidence            9996543

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.72  E-value=1.6e-17  Score=128.90  Aligned_cols=121  Identities=21%  Similarity=0.256  Sum_probs=80.8

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCCC----CCCCcceeeeEEEEEEE-------C-----------------C---
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE----ELSPTIGVDFKIKHVAL-------G-----------------G---   58 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~----~~~~~~~~~~~~~~~~~-------~-----------------~---   58 (154)
                      ....++|+++|.+|+|||||+|+|++.++.    ...+++  +........       +                 +   
T Consensus        62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T--~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~  139 (550)
T 2qpt_A           62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTT--DCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTF  139 (550)
T ss_dssp             TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCC--CSEEEEECCSSSEEECCC------------------CC
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCcc--ceEEEEEECCcccccCCceeeecCcccHHHHhhhcccc
Confidence            346689999999999999999999998763    122222  111100000       0                 0   


Q ss_pred             ---eE---------EEEEEEeCCCccc-----------ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhc
Q 031704           59 ---KK---------MKLAIWDTAGQER-----------FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYS  115 (154)
Q Consensus        59 ---~~---------~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~  115 (154)
                         ..         ..+.+|||||...           +......+++.+|++++|+|+++....+.... |...+.   
T Consensus       140 ~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~-~l~~l~---  215 (550)
T 2qpt_A          140 LNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSE-AIGALR---  215 (550)
T ss_dssp             CTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHH-HHHHTT---
T ss_pred             cccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHH-HHHHHH---
Confidence               00         2588999999764           33455566788999999999988544444444 444443   


Q ss_pred             CCCCCcEEEEEeCCCCCCchhh
Q 031704          116 TNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus       116 ~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                       ....|+++|+||+|+.++.++
T Consensus       216 -~~~~pvilVlNK~Dl~~~~el  236 (550)
T 2qpt_A          216 -GHEDKIRVVLNKADMVETQQL  236 (550)
T ss_dssp             -TCGGGEEEEEECGGGSCHHHH
T ss_pred             -hcCCCEEEEEECCCccCHHHH
Confidence             235789999999999876554

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.72  E-value=2.5e-17  Score=121.43  Aligned_cols=75  Identities=13%  Similarity=0.147  Sum_probs=62.6

Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEECC----------CcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeC
Q 031704           59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT----------RRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK  128 (154)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK  128 (154)
                      ..+.+.+|||+|++.++..+..++++++++++|+|++          +..+++.... |++.+.......+.|++||+||
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~-~~~~i~~~~~~~~~piiLvgNK  259 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFLNK  259 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHH-HHHHHHTCGGGSSCEEEEEEEC
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHH-HHHHHHhccccCCCeEEEEEEC
Confidence            6789999999999999999999999999999999998          7889998888 6666655434467899999999


Q ss_pred             CCCCCc
Q 031704          129 VDKVCP  134 (154)
Q Consensus       129 ~Dl~~~  134 (154)
                      +||..+
T Consensus       260 ~DL~~~  265 (354)
T 2xtz_A          260 FDIFEK  265 (354)
T ss_dssp             HHHHHH
T ss_pred             cchhhh
Confidence            998543

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.72  E-value=1.3e-18  Score=136.00  Aligned_cols=119  Identities=20%  Similarity=0.199  Sum_probs=63.4

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCCC------------------------------CCCCcceeeeEEEEEEECCe
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE------------------------------ELSPTIGVDFKIKHVALGGK   59 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~   59 (154)
                      ....++|+++|.+++|||||+++|+...-.                              ......|+|.......+...
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            456789999999999999999999642110                              00012233444444444445


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEECCCcc---hH---HHHHHHHHHHHhhhcCCCCCc-EEEEEeCCCCC
Q 031704           60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TF---TNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKV  132 (154)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl~  132 (154)
                      ...+.||||||++.|...+...++.+|++|+|+|+++..   .+   ..... ....+..    .+.| +++|+||+|+.
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e-~l~~~~~----lgip~iIvviNKiDl~  328 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTRE-HAYLLRA----LGISEIVVSVNKLDLM  328 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHH-HHHHHHH----SSCCCEEEEEECGGGG
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHH-HHHHHHH----cCCCeEEEEEeccccc
Confidence            578999999999999998888999999999999998642   11   11111 1122222    2444 89999999997


Q ss_pred             C
Q 031704          133 C  133 (154)
Q Consensus       133 ~  133 (154)
                      +
T Consensus       329 ~  329 (592)
T 3mca_A          329 S  329 (592)
T ss_dssp             T
T ss_pred             c
Confidence            5

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.71  E-value=4.6e-17  Score=121.79  Aligned_cols=84  Identities=24%  Similarity=0.246  Sum_probs=48.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEE--EE-------------------ECC-eEEEEEEEeCCC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKH--VA-------------------LGG-KKMKLAIWDTAG   70 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~--~~-------------------~~~-~~~~~~i~D~~g   70 (154)
                      +||+++|.+|+|||||+|++++... ....|.++.+.....  +.                   +++ ..+.+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            4899999999999999999998874 222332222221111  11                   122 256899999999


Q ss_pred             ccc----cccc---ccccccCccEEEEEEECCCc
Q 031704           71 QER----FRTL---TSSYYRGAQGIIMVYDVTRR   97 (154)
Q Consensus        71 ~~~----~~~~---~~~~~~~~~~~v~v~d~~~~   97 (154)
                      ...    ...+   ...+++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            753    2222   23457899999999999875

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.71  E-value=1.8e-17  Score=119.36  Aligned_cols=122  Identities=20%  Similarity=0.185  Sum_probs=76.7

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CC----CCccee----------------------eeE------------
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-EL----SPTIGV----------------------DFK------------   50 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~-~~----~~~~~~----------------------~~~------------   50 (154)
                      ....++|+++|.+|+|||||+|+|++..+. ..    ....+.                      +..            
T Consensus        23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~  102 (299)
T 2aka_B           23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  102 (299)
T ss_dssp             TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence            345689999999999999999999998762 11    111110                      000            


Q ss_pred             -----------EEEEEEC-CeEEEEEEEeCCCcc-------------cccccccccccCccEEE-EEEECCCcchHHHHH
Q 031704           51 -----------IKHVALG-GKKMKLAIWDTAGQE-------------RFRTLTSSYYRGAQGII-MVYDVTRRDTFTNLA  104 (154)
Q Consensus        51 -----------~~~~~~~-~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~v-~v~d~~~~~s~~~~~  104 (154)
                                 ...+.+. .....+.+|||||..             .+......+++.++.++ +|+|+++..+.....
T Consensus       103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~  182 (299)
T 2aka_B          103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred             hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence                       0000000 012578999999953             33445666778887666 799998754433322


Q ss_pred             HHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704          105 DIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      . |...+    ...+.|+++|+||+|+.++..
T Consensus       183 ~-~~~~~----~~~~~~~i~V~NK~Dl~~~~~  209 (299)
T 2aka_B          183 K-IAKEV----DPQGQRTIGVITKLDLMDEGT  209 (299)
T ss_dssp             H-HHHHH----CTTCSSEEEEEECGGGSCTTC
T ss_pred             H-HHHHh----CCCCCeEEEEEEccccCCCCc
Confidence            2 33333    234689999999999976543

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.71  E-value=1.2e-17  Score=121.33  Aligned_cols=121  Identities=18%  Similarity=0.197  Sum_probs=74.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCC----CcceeeeEEEE--------------------------------
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELS----PTIGVDFKIKH--------------------------------   53 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~----~~~~~~~~~~~--------------------------------   53 (154)
                      ...++|+++|.+|+|||||+|++++..+ +...    ...+.......                                
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE  101 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence            4568999999999999999999999876 2211    11100000000                                


Q ss_pred             ---------------------EE-ECCeEEEEEEEeCCCccc-------------ccccccccccCccEEEEEEECCCcc
Q 031704           54 ---------------------VA-LGGKKMKLAIWDTAGQER-------------FRTLTSSYYRGAQGIIMVYDVTRRD   98 (154)
Q Consensus        54 ---------------------~~-~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~v~v~d~~~~~   98 (154)
                                           +. .......+.+|||||...             +......+++.+|++++|+|.++..
T Consensus       102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~  181 (315)
T 1jwy_B          102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD  181 (315)
T ss_dssp             HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred             HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence                                 00 001123689999999653             3445566788999999999975433


Q ss_pred             hH-HHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           99 TF-TNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        99 s~-~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      .. ..... +...+    ...+.|+++|+||+|+..+..
T Consensus       182 ~~~~~~~~-i~~~~----~~~~~~~i~v~NK~Dl~~~~~  215 (315)
T 1jwy_B          182 LANSDALQ-LAKEV----DPEGKRTIGVITKLDLMDKGT  215 (315)
T ss_dssp             STTCSHHH-HHHHH----CSSCSSEEEEEECTTSSCSSC
T ss_pred             hhhhHHHH-HHHHh----CCCCCcEEEEEcCcccCCcch
Confidence            11 11111 22232    334789999999999976544

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.70  E-value=4.4e-17  Score=129.37  Aligned_cols=118  Identities=16%  Similarity=0.181  Sum_probs=82.8

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcC--CCCC---CCC------------cceeee--EEEEEEECCeEEEEEEEeCCC
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSD--TFEE---LSP------------TIGVDF--KIKHVALGGKKMKLAIWDTAG   70 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~--~~~~---~~~------------~~~~~~--~~~~~~~~~~~~~~~i~D~~g   70 (154)
                      .....+|+++|.+++|||||+++|+..  ....   ..+            ..+.+.  ....+...  .+.+++|||||
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG   84 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPG   84 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcC
Confidence            345789999999999999999999852  2100   000            011111  11222333  36789999999


Q ss_pred             cccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      +.++......+++.+|++++|+|+++..+...... |.. +..    .+.|+++|+||+|+....
T Consensus        85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~-~~~-~~~----~~~p~ilviNK~Dl~~~~  143 (693)
T 2xex_A           85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETV-WRQ-ATT----YGVPRIVFVNKMDKLGAN  143 (693)
T ss_dssp             CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHH-HHH----TTCCEEEEEECTTSTTCC
T ss_pred             CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHH-HHH-HHH----cCCCEEEEEECCCccccc
Confidence            99998888889999999999999998777665544 543 332    368999999999997653

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.70  E-value=1.8e-17  Score=129.35  Aligned_cols=113  Identities=22%  Similarity=0.217  Sum_probs=78.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----CcceeeeEEEEE------------EECCeEEEEEEEeCCCcccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-----PTIGVDFKIKHV------------ALGGKKMKLAIWDTAGQERF   74 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~-----~~~~~~~~~~~~------------~~~~~~~~~~i~D~~g~~~~   74 (154)
                      +.++|+++|++++|||||++++.+.......     ++.+..+.....            .++.....+++|||||++.|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            3479999999999999999999876553322     222221111000            00011125899999999999


Q ss_pred             cccccccccCccEEEEEEECCC---cchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           75 RTLTSSYYRGAQGIIMVYDVTR---RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        75 ~~~~~~~~~~~~~~v~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      ...+...++.+|++++|+|+++   +++++.+.     .+..    .+.|+++++||+|+..
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-----~l~~----~~vPiIVViNKiDl~~  136 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILRM----YRTPFVVAANKIDRIH  136 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-----HHHH----TTCCEEEEEECGGGST
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH-----HHHH----cCCeEEEEeccccccc
Confidence            9999989999999999999998   44444332     2222    4689999999999964

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.70  E-value=3.7e-17  Score=134.03  Aligned_cols=120  Identities=18%  Similarity=0.090  Sum_probs=82.3

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCC-------CC--------CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDT-------FE--------ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER   73 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~-------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   73 (154)
                      .....++|+++|++++|||||+++|.+..       +.        ......|+|.....+.+......+.+|||||+++
T Consensus       292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed  371 (1289)
T 3avx_A          292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD  371 (1289)
T ss_dssp             CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred             ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence            34567999999999999999999998641       10        1112334444333344444556889999999999


Q ss_pred             ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCc-EEEEEeCCCCCCc
Q 031704           74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKVCP  134 (154)
Q Consensus        74 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl~~~  134 (154)
                      |.......++.+|++|+|+|+++.... .... |...+...    +.| +++++||+|+.+.
T Consensus       372 F~~~mi~gas~AD~aILVVDAtdGv~~-QTrE-hL~ll~~l----gIP~IIVVINKiDLv~d  427 (1289)
T 3avx_A          372 YVKNMITGAAQMDGAILVVAATDGPMP-QTRE-HILLGRQV----GVPYIIVFLNKCDMVDD  427 (1289)
T ss_dssp             HHHHHHHTSCCCSEEEEEEETTTCSCT-THHH-HHHHHHHH----TCSCEEEEEECCTTCCC
T ss_pred             HHHHHHHHHhhCCEEEEEEcCCccCcH-HHHH-HHHHHHHc----CCCeEEEEEeecccccc
Confidence            988888889999999999999986432 2233 33344333    567 7899999999853

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.70  E-value=2.8e-18  Score=131.28  Aligned_cols=116  Identities=15%  Similarity=0.163  Sum_probs=78.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      +.++|+++|+.++|||||++++.+..+.... ..+++.......+......+.+|||||++.|..++...++.+|++++|
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e-~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV   81 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGE-AGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV   81 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTT-BCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCcccc-CCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence            4579999999999999999999876542111 111111111111221224688999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +|+++......... | ..+.    ..+.|+++++||+|+...
T Consensus        82 Vda~~g~~~qT~e~-l-~~~~----~~~vPiIVviNKiDl~~~  118 (501)
T 1zo1_I           82 VAADDGVMPQTIEA-I-QHAK----AAQVPVVVAVNKIDKPEA  118 (501)
T ss_dssp             EETTTBSCTTTHHH-H-HHHH----HTTCCEEEEEECSSSSTT
T ss_pred             eecccCccHHHHHH-H-HHHH----hcCceEEEEEEecccccc
Confidence            99988432221111 2 1222    236789999999999753

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.69  E-value=7.1e-17  Score=130.52  Aligned_cols=117  Identities=20%  Similarity=0.226  Sum_probs=85.5

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCC------------CCCC-----C--CcceeeeEEEEEE------------ECC
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDT------------FEEL-----S--PTIGVDFKIKHVA------------LGG   58 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~------------~~~~-----~--~~~~~~~~~~~~~------------~~~   58 (154)
                      .....||+++|+.++|||||+++|+...            +.+.     .  .+.........+.            .++
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            3467899999999999999999998642            1000     0  1111112222232            234


Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                      ..+.+++|||||+.+|...+..+++.+|++|+|+|+++..++..... |.....     .+.|+++|+||+|+.
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~-~~~~~~-----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV-LRQALG-----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHH-HHHHHH-----TTCEEEEEEECHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHHHHH-----cCCCeEEEEECCCcc
Confidence            57899999999999999999999999999999999999887776544 554332     368899999999986

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.69  E-value=2e-16  Score=125.75  Aligned_cols=120  Identities=16%  Similarity=0.147  Sum_probs=84.1

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCC--CCC------------CCC---cceeeeEEE--EEEE-----CCeEEEEEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDT--FEE------------LSP---TIGVDFKIK--HVAL-----GGKKMKLAI   65 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~--~~~------------~~~---~~~~~~~~~--~~~~-----~~~~~~~~i   65 (154)
                      ..+..+|+++|..++|||||+++|+...  +..            ..+   ..+.+....  .+..     ++..+.+++
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence            3466899999999999999999997531  110            000   122222222  2222     223488999


Q ss_pred             EeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           66 WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        66 ~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      |||||+.+|......+++.+|++|+|+|+++......... |... .    ..+.|+++|+||+|+...+
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~-~~~~-~----~~~ip~ilviNKiD~~~~~  150 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETV-WRQA-N----KYKVPRIAFVNKMDRMGAN  150 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHH-HHHH-H----HcCCCEEEEEeCCCccccc
Confidence            9999999998888889999999999999998765444333 4332 2    2368999999999997654

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.68  E-value=8.9e-17  Score=127.69  Aligned_cols=119  Identities=22%  Similarity=0.263  Sum_probs=80.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceee--------eEEEE----------------------------
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVD--------FKIKH----------------------------   53 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~--------~~~~~----------------------------   53 (154)
                      ..++|+++|.+|+|||||+|+|++.+..  ...|++...        .....                            
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            5689999999999999999999998762  223333110        00000                            


Q ss_pred             -----------------EEECCeE--EEEEEEeCCCccc---ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHH
Q 031704           54 -----------------VALGGKK--MKLAIWDTAGQER---FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI  111 (154)
Q Consensus        54 -----------------~~~~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~  111 (154)
                                       +..+...  ..+.+|||||...   .......+++++|++++|+|+++..+...... |.+.+
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~-l~~~l  226 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRY-LENYI  226 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHH-HHHHT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHH-HHHHH
Confidence                             0111000  2589999999544   34455667889999999999998877666544 54443


Q ss_pred             hhhcCCCCCcEEEEEeCCCCCCch
Q 031704          112 DLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus       112 ~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ..    .+.|+++|+||+|+....
T Consensus       227 ~~----~~~~iiiVlNK~Dl~~~~  246 (695)
T 2j69_A          227 KG----RGLTVFFLVNAWDQVRES  246 (695)
T ss_dssp             TT----SCCCEEEEEECGGGGGGG
T ss_pred             Hh----hCCCEEEEEECccccccc
Confidence            32    356899999999996543

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.65  E-value=3.2e-16  Score=115.95  Aligned_cols=121  Identities=20%  Similarity=0.225  Sum_probs=78.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCccee---eeEE----------E-------------------------
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGV---DFKI----------K-------------------------   52 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~---~~~~----------~-------------------------   52 (154)
                      ..++|+++|.+|||||||+|++.+..+ +......+.   ....          .                         
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            456999999999999999999999876 322211110   0000          0                         


Q ss_pred             --------------EEEE-CCeEEEEEEEeCCCcccc-------------cccccccccCccEEEEEEECCCcchHHHHH
Q 031704           53 --------------HVAL-GGKKMKLAIWDTAGQERF-------------RTLTSSYYRGAQGIIMVYDVTRRDTFTNLA  104 (154)
Q Consensus        53 --------------~~~~-~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~  104 (154)
                                    ...+ ......+.+|||||...+             ..+...+++++|++++|++.++.+....  
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~--  190 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS--  190 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC--
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH--
Confidence                          0000 011235889999997665             4556677899999999998765443321  


Q ss_pred             HHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704          105 DIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      . |...+... ...+.|+++|+||+|+.++..
T Consensus       191 ~-~~~l~~~~-~~~~~~~i~V~nK~Dl~~~~~  220 (360)
T 3t34_A          191 D-AIKISREV-DPSGDRTFGVLTKIDLMDKGT  220 (360)
T ss_dssp             H-HHHHHHHS-CTTCTTEEEEEECGGGCCTTC
T ss_pred             H-HHHHHHHh-cccCCCEEEEEeCCccCCCcc
Confidence            1 44444443 445679999999999976544

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.63  E-value=4.3e-16  Score=120.75  Aligned_cols=130  Identities=13%  Similarity=0.107  Sum_probs=87.6

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCC------------------C---CCCCCcceeeeEEEEEEECCeEEEEEEEeC
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDT------------------F---EELSPTIGVDFKIKHVALGGKKMKLAIWDT   68 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~------------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~   68 (154)
                      ..++.+|+|+|+.++|||||..+++...                  .   .......|++.......+..+.+.++++||
T Consensus        28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDT  107 (548)
T 3vqt_A           28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDT  107 (548)
T ss_dssp             HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECC
T ss_pred             ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeC
Confidence            4467899999999999999999996211                  1   111122233333333333224468999999


Q ss_pred             CCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh-hhhhhhhh
Q 031704           69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL-FLSGFWHF  145 (154)
Q Consensus        69 ~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~-~~~~~~~~  145 (154)
                      ||+.+|.......++-+|++|+|+|+...-....... |... ..    .+.|.+++.||+|....+.. ..+++...
T Consensus       108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v-~~~a-~~----~~lp~i~fINK~Dr~~ad~~~~~~~i~~~  179 (548)
T 3vqt_A          108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKL-MDVC-RM----RATPVMTFVNKMDREALHPLDVMADIEQH  179 (548)
T ss_dssp             CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHH-HHHH-HH----TTCCEEEEEECTTSCCCCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHH-HHHH-HH----hCCceEEEEecccchhcchhHhhhhhhhh
Confidence            9999999999999999999999999998665444333 5433 33    37899999999999766533 33444443

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.63  E-value=1.1e-15  Score=104.61  Aligned_cols=116  Identities=19%  Similarity=0.215  Sum_probs=70.9

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----------ccccc
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----------FRTLT   78 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~   78 (154)
                      .....+++++|++|+|||||++++.+..+ ....++.|.+.....+.+++   .+.+|||||...          +....
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            34557999999999999999999998874 44455666554444444433   467899999742          22222


Q ss_pred             cccc---cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           79 SSYY---RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        79 ~~~~---~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      ..++   +.++++++++|+++..+.... . ....+.    ..+.|+++|+||+|+...
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~-~~~~~~----~~~~~~~~v~nK~D~~s~  152 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ-Q-MIEWAV----DSNIAVLVLLTKADKLAS  152 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHH-H-HHHHHH----HTTCCEEEEEECGGGSCH
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHH-H-HHHHHH----HcCCCeEEEEecccCCCc
Confidence            2333   468999999999986654321 1 112222    236788999999999764

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.62  E-value=4e-15  Score=109.76  Aligned_cols=83  Identities=23%  Similarity=0.190  Sum_probs=56.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCe---------------EEEEEEEeCCCccccc--
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK---------------KMKLAIWDTAGQERFR--   75 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~--   75 (154)
                      ++|+++|.+|+|||||+|++.+..+ ...+|.++.......+.+++.               ...+.+|||||.....  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            5899999999999999999998775 233333222222223444432               1478999999976542  


Q ss_pred             --cc---ccccccCccEEEEEEECCC
Q 031704           76 --TL---TSSYYRGAQGIIMVYDVTR   96 (154)
Q Consensus        76 --~~---~~~~~~~~~~~v~v~d~~~   96 (154)
                        .+   ...+++++|++++|+|+++
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCC
Confidence              22   2335789999999999986

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.59  E-value=4.7e-15  Score=117.37  Aligned_cols=116  Identities=16%  Similarity=0.148  Sum_probs=81.7

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC--------------CCCC---cceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE--------------ELSP---TIGVDFKIKHVALGGKKMKLAIWDTAGQER   73 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~--------------~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   73 (154)
                      ....+|+++|+.|+|||||++++++....              ...+   ..++++......+....+.+++|||||+.+
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            35679999999999999999999843321              0000   112233333333333457899999999999


Q ss_pred             ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        74 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                      +......+++.+|++++|+|+++...... .. +...+..    .+.|+++|+||+|+.
T Consensus        87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~-~~~~~~~----~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 FVGEIRGALEAADAALVAVSAEAGVQVGT-ER-AWTVAER----LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHH-HH-HHHHHHH----TTCCEEEEEECGGGC
T ss_pred             hHHHHHHHHhhcCcEEEEEcCCcccchhH-HH-HHHHHHH----ccCCEEEEecCCchh
Confidence            98888889999999999999887544332 23 3333333    368999999999997

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.58  E-value=1.8e-14  Score=108.25  Aligned_cols=123  Identities=21%  Similarity=0.254  Sum_probs=68.8

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCC--------CcceeeeEEEEEEECCeEEEEEEEeCCCccccc------
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELS--------PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR------   75 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------   75 (154)
                      .-.++|+++|++|+|||||++.+++.... ...        ++.+.......+...+....+.+||++|.....      
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            34588999999999999999999987652 211        111111111111223334578999999965431      


Q ss_pred             -c------------------cccccccCccEEEEEEECCCc-chHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           76 -T------------------LTSSYYRGAQGIIMVYDVTRR-DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        76 -~------------------~~~~~~~~~~~~v~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                       .                  +...+++++++.+++|..... .+++.....|...+.     ...|+|+|+||+|+...+
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~~  183 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTPE  183 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccHH
Confidence             1                  123345556655555554432 344444433555543     268999999999998776


Q ss_pred             hhh
Q 031704          136 RLF  138 (154)
Q Consensus       136 ~~~  138 (154)
                      ++.
T Consensus       184 ev~  186 (418)
T 2qag_C          184 ECQ  186 (418)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            553

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.56  E-value=1.4e-14  Score=108.77  Aligned_cols=117  Identities=21%  Similarity=0.217  Sum_probs=78.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----ccccc---cccccCcc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----FRTLT---SSYYRGAQ   86 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~---~~~~~~~~   86 (154)
                      .++++|++|||||||++++.+... ...++.++.......+..++ ...+.+||+||...    ...+.   ...+.+++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            478999999999999999998754 22233333333444455443 24678999999643    11222   22345789


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhcC-CCCCcEEEEEeCCCCCCc
Q 031704           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~Dl~~~  134 (154)
                      .+++++|++ ...+..+.. |.+++..+.. ....|.++|+||+|+...
T Consensus       238 ~lL~vvDls-~~~~~~ls~-g~~el~~la~aL~~~P~ILVlNKlDl~~~  284 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLET-LRKEVGAYDPALLRRPSLVALNKVDLLEE  284 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHH-HHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred             hhhEEeCCc-cCCHHHHHH-HHHHHHHHhHHhhcCCEEEEEECCChhhH
Confidence            999999998 666777766 6555554411 235789999999999865

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.55  E-value=4.2e-15  Score=109.70  Aligned_cols=120  Identities=18%  Similarity=0.089  Sum_probs=70.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCc----ceeeeE-----------------------------------
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPT----IGVDFK-----------------------------------   50 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~----~~~~~~-----------------------------------   50 (154)
                      ...++|+++|.+|+|||||+|+|++.++. .....    .+....                                   
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            34579999999999999999999998762 22111    110000                                   


Q ss_pred             ----------EEEEEEC-CeEEEEEEEeCCCcc-------------cccccccccccCcc-EEEEEEECCCcchHHHHHH
Q 031704           51 ----------IKHVALG-GKKMKLAIWDTAGQE-------------RFRTLTSSYYRGAQ-GIIMVYDVTRRDTFTNLAD  105 (154)
Q Consensus        51 ----------~~~~~~~-~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~~-~~v~v~d~~~~~s~~~~~~  105 (154)
                                ...+.+. .....+.+|||||..             .+..+...+++.++ +++++.+++.......   
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~---  185 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD---  185 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---
Confidence                      0001110 112468999999953             23345555666554 5555666654222111   


Q ss_pred             HHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704          106 IWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus       106 ~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                       |...+... ...+.|+++|+||+|+.++.
T Consensus       186 -~~~i~~~~-~~~~~~~i~V~NK~Dl~~~~  213 (353)
T 2x2e_A          186 -ALKVAKEV-DPQGQRTIGVITKLDLMDEG  213 (353)
T ss_dssp             -HHHHHHHH-CTTCTTEEEEEECGGGSCTT
T ss_pred             -HHHHHHHh-CcCCCceEEEeccccccCcc
Confidence             22223332 34578999999999997554

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.54  E-value=4.6e-14  Score=112.47  Aligned_cols=129  Identities=14%  Similarity=0.096  Sum_probs=86.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCC--------------C---CCCCCcceeeeEEEEEEE--C-----CeEEEEEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDT--------------F---EELSPTIGVDFKIKHVAL--G-----GKKMKLAIW   66 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~--------------~---~~~~~~~~~~~~~~~~~~--~-----~~~~~~~i~   66 (154)
                      ++..+|+|+|+..+|||||..+|+...              +   .......|+|.....+.+  .     ...+.++++
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            567899999999999999999987321              1   011123344443333322  2     236889999


Q ss_pred             eCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch-hhhhhhhhhh
Q 031704           67 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW-RLFLSGFWHF  145 (154)
Q Consensus        67 D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~-~~~~~~~~~~  145 (154)
                      |||||.+|.......++-+|++|+|+|+...-....... |.+..+.     +.|.+++.||+|....+ ....++++..
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v-~~~a~~~-----~lp~i~~iNKiDr~~a~~~~~~~ei~~~  164 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETV-WRQANKY-----GVPRIVYVNKMDRQGANFLRVVEQIKKR  164 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHHHH-----TCCEEEEEECSSSTTCCHHHHHHHHHHH
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHH-HHHHHHc-----CCCeEEEEccccccCccHHHHHHHhhhh
Confidence            999999999999999999999999999987654433332 5444333     78899999999996554 2344555443

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.51  E-value=4.5e-14  Score=105.42  Aligned_cols=81  Identities=16%  Similarity=0.146  Sum_probs=68.4

Q ss_pred             EEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCC----------cchHHHHHHHHHHHHhhhcCCCCCc
Q 031704           52 KHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----------RDTFTNLADIWAKEIDLYSTNQDCI  121 (154)
Q Consensus        52 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~  121 (154)
                      ..+.+++  +.+.+|||+|++.++..+..+++.++++++|||+++          ..+++.... |+..+.......+.|
T Consensus       210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~-~~~~i~~~~~~~~~p  286 (402)
T 1azs_C          210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALN-LFKSIWNNRWLRTIS  286 (402)
T ss_dssp             EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHH-HHHHHHTCTTCSSCC
T ss_pred             EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHH-HHHHHHhcccCCCCe
Confidence            3444543  789999999999999999999999999999999999          889999888 777776553456789


Q ss_pred             EEEEEeCCCCCCch
Q 031704          122 KLLVGNKVDKVCPW  135 (154)
Q Consensus       122 ~ivv~nK~Dl~~~~  135 (154)
                      ++||+||+||..++
T Consensus       287 iiLvgNK~DL~~~k  300 (402)
T 1azs_C          287 VILFLNKQDLLAEK  300 (402)
T ss_dssp             EEEEEECHHHHHHH
T ss_pred             EEEEEEChhhhhhh
Confidence            99999999996543

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.49  E-value=1.1e-13  Score=102.48  Aligned_cols=116  Identities=17%  Similarity=0.073  Sum_probs=81.1

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc-------cccccccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR-------TLTSSYYR   83 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~   83 (154)
                      ...+|+++|.||+|||||+|+|.+.+. ...+|.++.+.....+.+.+.  .+.++||||...-.       ......++
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~i~  148 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAVAR  148 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence            346899999999999999999998776 455677777777777777765  56788999953211       12334568


Q ss_pred             CccEEEEEEECCCcchHHHHHHHHHHHHhhh-cCCCCCcEEEEEeCCCCC
Q 031704           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLY-STNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~ivv~nK~Dl~  132 (154)
                      .+|++++|+|++++...  ... ....+... ......|.+++.||.|..
T Consensus       149 ~ad~il~vvD~~~p~~~--~~~-i~~EL~~~~~~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          149 TCNLLFIILDVNKPLHH--KQI-IEKELEGVGIRLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             HCSEEEEEEETTSHHHH--HHH-HHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred             hcCccccccccCccHHH--HHH-HHHHHHHhhHhhccCChhhhhhHhhhh
Confidence            89999999999986432  222 22233332 122356778999999963

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.47  E-value=2.1e-13  Score=101.01  Aligned_cols=83  Identities=23%  Similarity=0.206  Sum_probs=55.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECC-------------------eEEEEEEEeCCCccc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGG-------------------KKMKLAIWDTAGQER   73 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~~~   73 (154)
                      ++|+++|.+|+|||||+|++.+... ....+..+.........+.+                   ....+.+|||||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            4799999999999999999998653 22223222222222223321                   234789999999765


Q ss_pred             cc----cc---ccccccCccEEEEEEECCC
Q 031704           74 FR----TL---TSSYYRGAQGIIMVYDVTR   96 (154)
Q Consensus        74 ~~----~~---~~~~~~~~~~~v~v~d~~~   96 (154)
                      ..    .+   ...+++++|++++|+|+++
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            42    12   2335789999999999986

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.45  E-value=5.9e-14  Score=101.53  Aligned_cols=121  Identities=22%  Similarity=0.311  Sum_probs=61.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC-CCCCCC---------CcceeeeEEEEEEECCeEEEEEEEeCCCc-------cc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSD-TFEELS---------PTIGVDFKIKHVALGGKKMKLAIWDTAGQ-------ER   73 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~   73 (154)
                      ...++|+++|++|+|||||++++++. .++...         ++..........+.++....+.+||++|.       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            35589999999999999999998875 332211         11111111112222344568999999997       44


Q ss_pred             cccccc-------cccc-------------CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           74 FRTLTS-------SYYR-------------GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        74 ~~~~~~-------~~~~-------------~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      +.....       .+++             ++++++++.+.+. .+++....   +.++..  ....++++|+||+|+..
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~---~~l~~l--~~~~~iilV~~K~Dl~~  169 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV---AFMKAI--HNKVNIVPVIAKADTLT  169 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH---HHHHHH--TTTSCEEEEECCGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH---HHHHHH--HhcCCEEEEEEeCCCCC
Confidence            444333       2222             2344555544332 22333322   233333  23568999999999987


Q ss_pred             chhh
Q 031704          134 PWRL  137 (154)
Q Consensus       134 ~~~~  137 (154)
                      .+++
T Consensus       170 ~~e~  173 (301)
T 2qnr_A          170 LKER  173 (301)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.45  E-value=1.8e-13  Score=101.16  Aligned_cols=80  Identities=14%  Similarity=0.135  Sum_probs=58.9

Q ss_pred             EEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCC----------cchHHHHHHHHHHHHhhhcCCCCCc
Q 031704           52 KHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----------RDTFTNLADIWAKEIDLYSTNQDCI  121 (154)
Q Consensus        52 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~  121 (154)
                      ..+.++  .+.+.+|||+|++.++..|..++++++++|+|+|+++          ..++..... |+..+.......+.|
T Consensus       194 ~~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~-~~~~i~~~~~~~~~p  270 (362)
T 1zcb_A          194 YDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN-IFETIVNNRVFSNVS  270 (362)
T ss_dssp             EEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSE
T ss_pred             EEeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHH-HHHHHhcchhhCCCC
Confidence            344444  4789999999999999999999999999999999999          778988888 555555443446789


Q ss_pred             EEEEEeCCCCCCc
Q 031704          122 KLLVGNKVDKVCP  134 (154)
Q Consensus       122 ~ivv~nK~Dl~~~  134 (154)
                      ++|++||+|+..+
T Consensus       271 iILv~NK~DL~~~  283 (362)
T 1zcb_A          271 IILFLNKTDLLEE  283 (362)
T ss_dssp             EEEEEECHHHHHH
T ss_pred             EEEEEEChhhhhh
Confidence            9999999999643

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.43  E-value=6.5e-15  Score=116.09  Aligned_cols=117  Identities=15%  Similarity=0.139  Sum_probs=82.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC--CCC------------CC---CCcceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSD--TFE------------EL---SPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR   75 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~--~~~------------~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   75 (154)
                      ..||+|+|+..+|||||..+|+..  ...            +.   ....|+|.......+..+.+.++++|||||.+|.
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~   81 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL   81 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence            458999999999999999999731  110            00   0122444444444444455679999999999999


Q ss_pred             ccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           76 TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        76 ~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ......++-+|++|+|+|+...-.... ...|.... ..    +.|.+++.||+|....+
T Consensus        82 ~Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~-~~----~lp~i~~INKmDr~~a~  135 (638)
T 3j25_A           82 AEVYRSLSVLDGAILLISAKDGVQAQT-RILFHALR-KM----GIPTIFFINKIDQNGID  135 (638)
T ss_dssp             HHHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHH-HH----TCSCEECCEECCSSSCC
T ss_pred             HHHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHH-Hc----CCCeEEEEeccccccCC
Confidence            999999999999999999987543332 22244333 33    67889999999986554

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.41  E-value=1.7e-12  Score=103.44  Aligned_cols=120  Identities=19%  Similarity=0.140  Sum_probs=73.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCC-Ccceee----------------------------------------
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELS-PTIGVD----------------------------------------   48 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~-~~~~~~----------------------------------------   48 (154)
                      ...++|+|+|.+++|||||+|++++..+ +... ..+...                                        
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            4567999999999999999999999876 2221 111000                                        


Q ss_pred             ----------eEEEEEEECCeEEEEEEEeCCCccc-------------ccccccccc-cCccEEEEEEECCCcchHHHHH
Q 031704           49 ----------FKIKHVALGGKKMKLAIWDTAGQER-------------FRTLTSSYY-RGAQGIIMVYDVTRRDTFTNLA  104 (154)
Q Consensus        49 ----------~~~~~~~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~~~~v~v~d~~~~~s~~~~~  104 (154)
                                .....+...+ ...+.++||||...             .......++ ..+|++++|.|++.........
T Consensus       129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l  207 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  207 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred             cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence                      0000111111 12478999999433             122333333 5789999999998753332222


Q ss_pred             HHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704          105 DIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      . +...+    ...+.|+++|+||+|+.++..
T Consensus       208 ~-ll~~L----~~~g~pvIlVlNKiDlv~~~~  234 (772)
T 3zvr_A          208 K-IAKEV----DPQGQRTIGVITKLDLMDEGT  234 (772)
T ss_dssp             H-HHHHH----CTTCSSEEEEEECTTSSCTTC
T ss_pred             H-HHHHH----HhcCCCEEEEEeCcccCCcch
Confidence            2 22333    334789999999999976543

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.40  E-value=1.4e-13  Score=99.63  Aligned_cols=99  Identities=17%  Similarity=0.114  Sum_probs=77.3

Q ss_pred             HHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcc-hHHHHH
Q 031704           28 TLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD-TFTNLA  104 (154)
Q Consensus        28 tli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~-s~~~~~  104 (154)
                      +++.++..+.+.  .+.|+.|..+. .....++   .+.+||+  ++.++.+++.+++++|++++|||++++. ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            688888887773  56688885554 2222222   6889999  8999999999999999999999999987 677666


Q ss_pred             HHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704          105 DIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      . |...+..    .+.|+++|+||+||.+++++
T Consensus       106 ~-~l~~~~~----~~~piilv~NK~DL~~~~~v  133 (301)
T 1u0l_A          106 K-FLVLAEK----NELETVMVINKMDLYDEDDL  133 (301)
T ss_dssp             H-HHHHHHH----TTCEEEEEECCGGGCCHHHH
T ss_pred             H-HHHHHHH----CCCCEEEEEeHHHcCCchhH
Confidence            6 8876654    37899999999999876653

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.38  E-value=2.1e-13  Score=101.50  Aligned_cols=88  Identities=23%  Similarity=0.204  Sum_probs=51.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCe---------------EEEEEEEeCCCccccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK---------------KMKLAIWDTAGQERFR   75 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~   75 (154)
                      ...+++++|.+|+|||||+|++.+... ....|.++.......+.+.+.               ...+.+|||||.....
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            457899999999999999999998866 334454544444455555432               2358999999976533


Q ss_pred             c-------cccccccCccEEEEEEECCCcch
Q 031704           76 T-------LTSSYYRGAQGIIMVYDVTRRDT   99 (154)
Q Consensus        76 ~-------~~~~~~~~~~~~v~v~d~~~~~s   99 (154)
                      .       .+..+++++|++++|+|+++.++
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence            2       34566889999999999986443

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.34  E-value=3.4e-13  Score=99.63  Aligned_cols=62  Identities=11%  Similarity=0.118  Sum_probs=41.9

Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      +.+.++||||...   .....+..+|++++|+|....+....+..          .....|.++|+||+|+....
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~----------~~~~~p~ivVlNK~Dl~~~~  233 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK----------GVLELADIVVVNKADGEHHK  233 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT----------TSGGGCSEEEEECCCGGGHH
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH----------hHhhcCCEEEEECCCCcChh
Confidence            5688999999432   22334578999999999876554322211          11235889999999996543

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.20  E-value=4.5e-12  Score=87.30  Aligned_cols=110  Identities=17%  Similarity=0.199  Sum_probs=61.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-------CCccee--------eeEEEEEEEC----------------CeE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEEL-------SPTIGV--------DFKIKHVALG----------------GKK   60 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~-------~~~~~~--------~~~~~~~~~~----------------~~~   60 (154)
                      ...+|+++|.+|+|||||+++|........       .+..+.        ......+...                ...
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            457999999999999999999986522110       000000        0000111110                012


Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +.+.+|||+|......   .+-...+.+++|+|+++....  ... +...   .    +.|+++|+||+|+...
T Consensus       109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~-~~~~---~----~~~~iiv~NK~Dl~~~  169 (221)
T 2wsm_A          109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEK-HPEI---F----RVADLIVINKVALAEA  169 (221)
T ss_dssp             CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHH-CHHH---H----HTCSEEEEECGGGHHH
T ss_pred             CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhh-hhhh---h----hcCCEEEEecccCCcc
Confidence            4678899988521111   111246889999998875421  111 1111   1    4678999999999644

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.18  E-value=6.2e-12  Score=93.30  Aligned_cols=115  Identities=17%  Similarity=0.180  Sum_probs=71.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC-----CCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc-------cccc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD-----TFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL-------TSSY   81 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~   81 (154)
                      .+++++|.+|+|||||+|++++.     .........+.|.....+.++..   +.++||||-......       ....
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~  239 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLKI  239 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence            47999999999999999999986     22222333344455555555543   688999995322211       1111


Q ss_pred             c---cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           82 Y---RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        82 ~---~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      +   ++.+.++++++..+...+..+..     +. .....+.|+++++||.|..+..+.
T Consensus       240 ~~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~-~l~~~~~~~~~v~~k~d~~~~~~~  292 (369)
T 3ec1_A          240 ITPKREIHPRVYQLNEGQTLFFGGLAR-----LD-YIKGGRRSFVCYMANELTVHRTKL  292 (369)
T ss_dssp             HSCSSCCCCEEEEECTTEEEEETTTEE-----EE-EEESSSEEEEEEECTTSCEEEEEG
T ss_pred             HhcccccCceEEEEcCCceEEECCEEE-----EE-EccCCCceEEEEecCCcccccccH
Confidence            2   56799999998753321111100     11 113346799999999999765544

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.16  E-value=1.4e-12  Score=95.79  Aligned_cols=63  Identities=19%  Similarity=0.143  Sum_probs=39.0

Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      +.+.++||||......   ...+.+|++++|+|.+..+.+..+..    ..      .+.|.++|+||+|+.....
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~----~~------~~~p~ivv~NK~Dl~~~~~  211 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK----GL------MEVADLIVINKDDGDNHTN  211 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH----HH------HHHCSEEEECCCCTTCHHH
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH----hh------hcccCEEEEECCCCCChHH
Confidence            4689999999654332   23578999999999876543211110    00      1357899999999976533

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.14  E-value=2.2e-11  Score=89.74  Aligned_cols=61  Identities=11%  Similarity=0.105  Sum_probs=35.9

Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +.+.++||+|....   .......+|.+++|+|++.......+..    .+      ...|.++|+||+|+...
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~----~i------l~~~~ivVlNK~Dl~~~  227 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR----GI------IEMADLVAVTKSDGDLI  227 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC----------------------CCSCSEEEECCCSGGGH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH----HH------HhcCCEEEEeeecCCCc
Confidence            46789999995311   2334578999999999887543221111    11      13477999999999643

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.13  E-value=1.8e-10  Score=81.19  Aligned_cols=73  Identities=12%  Similarity=-0.004  Sum_probs=43.6

Q ss_pred             EEEEEEeCCCccccccccc------ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           61 MKLAIWDTAGQERFRTLTS------SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~------~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +.+.+|||||.........      ..+.. +++++++|+............+....... ...+.|+++|+||+|+...
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~iv~NK~D~~~~  186 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID-LRLGATTIPALNKVDLLSE  186 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH-HHHTSCEEEEECCGGGCCH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh-cccCCCeEEEEeccccccc
Confidence            4789999999865432211      23456 89999998765433333222111111111 2236789999999999865


Q ss_pred             h
Q 031704          135 W  135 (154)
Q Consensus       135 ~  135 (154)
                      .
T Consensus       187 ~  187 (262)
T 1yrb_A          187 E  187 (262)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.11  E-value=1.7e-13  Score=94.79  Aligned_cols=27  Identities=19%  Similarity=0.294  Sum_probs=24.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF   38 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~   38 (154)
                      ..++|+++|.+|+|||||+++++...+
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~   63 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLK   63 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            468999999999999999999997754

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.08  E-value=5.2e-11  Score=88.29  Aligned_cols=115  Identities=15%  Similarity=0.164  Sum_probs=68.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------cc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TS   79 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~   79 (154)
                      .+++++|.+|+|||||+|++++...      .......+.|.....+.++..   +.++||||-......        ..
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  237 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK  237 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence            4799999999999999999998632      222333444444455555443   688999995432211        11


Q ss_pred             cc--ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           80 SY--YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        80 ~~--~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      .+  .+..+.++++++......+..+..     + ........|+++++||.|..+..+.
T Consensus       238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~-d~l~~~~~~~~~v~nk~d~~~~~~~  291 (368)
T 3h2y_A          238 LITPTKEIKPMVFQLNEEQTLFFSGLAR-----F-DYVSGGRRAFTCHFSNRLTIHRTKL  291 (368)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTEE-----E-EEEESSSEEEEEEECTTSCEEEEEH
T ss_pred             HhccccccCceEEEEcCCCEEEEcceEE-----E-EEecCCCceEEEEecCccccccccH
Confidence            11  246788888888743211111100     1 1113346799999999999766544

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.06  E-value=3.2e-10  Score=84.57  Aligned_cols=85  Identities=24%  Similarity=0.269  Sum_probs=60.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCe-------------E--EEEEEEeCCCccc-
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGK-------------K--MKLAIWDTAGQER-   73 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~-------------~--~~~~i~D~~g~~~-   73 (154)
                      ...++.++|++|+|||||+|.+.+...  ....|.++.......+.+.+.             .  ..+.+||+||... 
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            457999999999999999999999764  334454444444555555541             1  3578999999432 


Q ss_pred             ------ccccccccccCccEEEEEEECCC
Q 031704           74 ------FRTLTSSYYRGAQGIIMVYDVTR   96 (154)
Q Consensus        74 ------~~~~~~~~~~~~~~~v~v~d~~~   96 (154)
                            +.......++.+|++++|+|+.+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                  22234455789999999999864

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.94  E-value=2.2e-09  Score=76.36  Aligned_cols=119  Identities=23%  Similarity=0.245  Sum_probs=62.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCC---------CcceeeeEEEE-EEECCeEEEEEEEeCCCccccc-------
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELS---------PTIGVDFKIKH-VALGGKKMKLAIWDTAGQERFR-------   75 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~i~D~~g~~~~~-------   75 (154)
                      .++++++|++|+|||||+|.+++...+...         +.......... .+-.+-...+.++|++|.....       
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            478999999999999999999875431110         00000000011 1111112367889999831100       


Q ss_pred             cc---------------------ccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           76 TL---------------------TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        76 ~~---------------------~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      ..                     ..-.+.+++++++++|.... .++.........+.    .. .++++|.||+|...+
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~-gL~~lD~~~l~~L~----~~-~~vI~Vi~K~D~lt~  155 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH-SLRPLDLEFMKHLS----KV-VNIIPVIAKADTMTL  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS-SCCHHHHHHHHHHH----TT-SEEEEEETTGGGSCH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC-cCCHHHHHHHHHHH----hc-CcEEEEEeccccCCH
Confidence            00                     01112346889999986521 11122121223332    22 789999999999866


Q ss_pred             hhh
Q 031704          135 WRL  137 (154)
Q Consensus       135 ~~~  137 (154)
                      .+.
T Consensus       156 ~e~  158 (270)
T 3sop_A          156 EEK  158 (270)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.90  E-value=5e-09  Score=75.69  Aligned_cols=61  Identities=16%  Similarity=0.103  Sum_probs=49.9

Q ss_pred             cccccccccccccCccEEEEEEECCCcc-hHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           71 QERFRTLTSSYYRGAQGIIMVYDVTRRD-TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      ++++..+.+.+++++|++++|+|++++. ++..+.. |+..+..    .++|+++|+||+||.++++
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~-~l~~~~~----~~~~~ilV~NK~DL~~~~~  127 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDN-MLVVYEY----FKVEPVIVFNKIDLLNEEE  127 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHH-HHHHHHH----TTCEEEEEECCGGGCCHHH
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHH-HHHHHHh----CCCCEEEEEEcccCCCccc
Confidence            5677778888899999999999999886 7776666 7766554    4789999999999987653

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.87  E-value=7.2e-10  Score=81.29  Aligned_cols=61  Identities=11%  Similarity=0.098  Sum_probs=35.3

Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +.+.++||+|...-.   ......+|.+++++|....+....+..    .+.      ..+.++++||+|+...
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~----~i~------~~~~ivvlNK~Dl~~~  208 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKK----GIF------ELADMIAVNKADDGDG  208 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCT----THH------HHCSEEEEECCSTTCC
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHH----HHh------ccccEEEEEchhccCc
Confidence            468899999964321   223467899999999865432111111    111      2345777899998643

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.86  E-value=1.5e-08  Score=76.24  Aligned_cols=119  Identities=18%  Similarity=0.269  Sum_probs=61.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCC--CCC-CcceeeeEEEEE--EECCeEEEEEEEeCCCcccc------------
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFE--ELS-PTIGVDFKIKHV--ALGGKKMKLAIWDTAGQERF------------   74 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~--~~~-~~~~~~~~~~~~--~~~~~~~~~~i~D~~g~~~~------------   74 (154)
                      ..++++++|++|+|||||+|.+.+....  ... ...+.......+  .-.+-...+.++|++|....            
T Consensus        41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~  120 (427)
T 2qag_B           41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE  120 (427)
T ss_dssp             CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence            3467999999999999999999987541  111 011111111111  11222346888999874321            


Q ss_pred             --ccc----ccc---------cccC--ccE-EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           75 --RTL----TSS---------YYRG--AQG-IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        75 --~~~----~~~---------~~~~--~~~-~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                        ...    ...         ....  .|+ ++++.|....-+..+     .+.++.. . .+.|+|+|.||+|...+.+
T Consensus       121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-----ieilk~L-~-~~~~vI~Vi~KtD~Lt~~E  193 (427)
T 2qag_B          121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-----LVTMKKL-D-SKVNIIPIIAKADAISKSE  193 (427)
T ss_dssp             HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-----HHHHHHT-C-SCSEEEEEESCGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-----HHHHHHH-h-hCCCEEEEEcchhccchHH
Confidence              000    011         1112  234 444555443222222     1233332 2 5789999999999987665


Q ss_pred             h
Q 031704          137 L  137 (154)
Q Consensus       137 ~  137 (154)
                      .
T Consensus       194 ~  194 (427)
T 2qag_B          194 L  194 (427)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.86  E-value=2.4e-09  Score=76.67  Aligned_cols=59  Identities=27%  Similarity=0.394  Sum_probs=37.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE   72 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   72 (154)
                      ...++++++|.+|+|||||+|++.+.......+..+.|.....+..+.   .+.++||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence            356899999999999999999999887644444445444433344433   57899999953

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.81  E-value=1.6e-09  Score=76.82  Aligned_cols=57  Identities=23%  Similarity=0.356  Sum_probs=36.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER   73 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   73 (154)
                      ++++++|.+|+|||||+|++.+.......+..+.|.....+..+.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            589999999999999999999887644455555544333333332   578999999543

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.62  E-value=6.3e-08  Score=74.39  Aligned_cols=115  Identities=16%  Similarity=0.156  Sum_probs=63.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHh------cCCC----C-CCCCcc-----------eeeeEEEEEE-------------
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFT------SDTF----E-ELSPTI-----------GVDFKIKHVA-------------   55 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~------~~~~----~-~~~~~~-----------~~~~~~~~~~-------------   55 (154)
                      .....|+++|.+|+||||+++.|.      +.+.    . ...+..           +.........             
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            356789999999999999999998      4432    0 111110           1111110000             


Q ss_pred             ECCeEEEEEEEeCCCcccccc-cc---ccc--ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcE-EEEEeC
Q 031704           56 LGGKKMKLAIWDTAGQERFRT-LT---SSY--YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK-LLVGNK  128 (154)
Q Consensus        56 ~~~~~~~~~i~D~~g~~~~~~-~~---~~~--~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-ivv~nK  128 (154)
                      .....+.+.|+||||...... ..   ...  ...+|.+++|+|+.........    ...+..     ..|+ .+|.||
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~----a~~~~~-----~~~i~gvVlNK  249 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ----AKAFKD-----KVDVASVIVTK  249 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH----HHHHHH-----HHCCCCEEEEC
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH----HHHHHh-----hcCceEEEEeC
Confidence            000235688999999653221 11   111  1268999999999875432111    112221     1454 799999


Q ss_pred             CCCCCc
Q 031704          129 VDKVCP  134 (154)
Q Consensus       129 ~Dl~~~  134 (154)
                      +|....
T Consensus       250 ~D~~~~  255 (504)
T 2j37_W          250 LDGHAK  255 (504)
T ss_dssp             TTSCCC
T ss_pred             Cccccc
Confidence            999744

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.46  E-value=1.3e-07  Score=73.81  Aligned_cols=64  Identities=19%  Similarity=0.112  Sum_probs=40.1

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCc-ceeeeEEEEE--EE-CCeEEEEEEEeCCCccc
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPT-IGVDFKIKHV--AL-GGKKMKLAIWDTAGQER   73 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~-~~~~~~~~~~--~~-~~~~~~~~i~D~~g~~~   73 (154)
                      .....+|+|+|.+|+|||||+|+|++.... ....+ .+.+.....+  +. ......+.++||||...
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            346689999999999999999999998742 21111 1222222222  11 11234678899999543

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=98.41  E-value=1.2e-07  Score=64.75  Aligned_cols=64  Identities=11%  Similarity=0.019  Sum_probs=40.7

Q ss_pred             CcccccccccccccCccEEEEEEECCCcchHHHHHHHHH---HHHhhhcCCCCCcEEEEEeCC-CCCCc
Q 031704           70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWA---KEIDLYSTNQDCIKLLVGNKV-DKVCP  134 (154)
Q Consensus        70 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~---~~~~~~~~~~~~~~ivv~nK~-Dl~~~  134 (154)
                      |+..++.+|..|+.++|++|+|+|.+|.+.++ ....+.   ..+.......+.|++|++||. |+..+
T Consensus       111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A  178 (227)
T 3l82_B          111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR  178 (227)
T ss_dssp             ------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB
T ss_pred             cHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC
Confidence            78889999999999999999999999987655 333232   112221112578999999995 77533

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.33  E-value=5.6e-07  Score=70.76  Aligned_cols=24  Identities=29%  Similarity=0.463  Sum_probs=21.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      ..++++|+.|||||||++.+.+-.
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred             CeEEEECCCCChHHHHHHHHhCCC
Confidence            459999999999999999998864

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.29  E-value=2e-06  Score=64.62  Aligned_cols=111  Identities=19%  Similarity=0.189  Sum_probs=57.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCcc-e--eeeEEEEEEECCeEEEEEEEeCCCcccccccccc-----ccc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTI-G--VDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSS-----YYR   83 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~~~~-~~~~-~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-----~~~   83 (154)
                      ...++++|++|||||||+|.+.+...+.. .-.. +  .+.....++ ....-.+.++|++|..........     .+.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            45899999999999999999998433111 0000 1  010011111 111114788999985321111111     123


Q ss_pred             CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                      ..+..++ ++.......+   ..+...+..    .+.|+++|.||.|+.
T Consensus       148 ~~~~~~~-lS~G~~~kqr---v~la~aL~~----~~~p~~lV~tkpdll  188 (413)
T 1tq4_A          148 EYDFFII-ISATRFKKND---IDIAKAISM----MKKEFYFVRTKVDSD  188 (413)
T ss_dssp             GCSEEEE-EESSCCCHHH---HHHHHHHHH----TTCEEEEEECCHHHH
T ss_pred             ccCCeEE-eCCCCccHHH---HHHHHHHHh----cCCCeEEEEecCccc
Confidence            3455554 7765322111   112223332    257999999999974

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.12  E-value=1.4e-05  Score=60.52  Aligned_cols=116  Identities=21%  Similarity=0.177  Sum_probs=62.5

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc------CCC-----CCCCC-----------cceeeeEEEEEEEC------------
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTS------DTF-----EELSP-----------TIGVDFKIKHVALG------------   57 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~------~~~-----~~~~~-----------~~~~~~~~~~~~~~------------   57 (154)
                      ....|+++|++|+||||++..|..      .+.     ....+           ..+..........+            
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            357899999999999999998862      221     01111           01111110000000            


Q ss_pred             -CeEEEEEEEeCCCccccccc----cc--ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCC
Q 031704           58 -GKKMKLAIWDTAGQERFRTL----TS--SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD  130 (154)
Q Consensus        58 -~~~~~~~i~D~~g~~~~~~~----~~--~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D  130 (154)
                       ...+.+.++||+|.......    ..  .....+|.+++|+|++.........    ..+...    -.+..+|.||.|
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a----~~f~~~----~~i~gVIlTKlD  250 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA----LAFKEA----TPIGSIIVTKLD  250 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH----HHHHHS----CTTEEEEEECCS
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH----HHHHhh----CCCeEEEEECCC
Confidence             01256889999995332211    11  1122478999999988754332222    222221    234578999999


Q ss_pred             CCCch
Q 031704          131 KVCPW  135 (154)
Q Consensus       131 l~~~~  135 (154)
                      .....
T Consensus       251 ~~~~g  255 (443)
T 3dm5_A          251 GSAKG  255 (443)
T ss_dssp             SCSSH
T ss_pred             Ccccc
Confidence            97554

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.06  E-value=9.9e-07  Score=63.01  Aligned_cols=66  Identities=9%  Similarity=-0.001  Sum_probs=45.7

Q ss_pred             CCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHH---HHHhhhcCCCCCcEEEEEeC-CCCCCc
Q 031704           68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWA---KEIDLYSTNQDCIKLLVGNK-VDKVCP  134 (154)
Q Consensus        68 ~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~---~~~~~~~~~~~~~~ivv~nK-~Dl~~~  134 (154)
                      ..|++.++..|..|+.++|++|+|+|.+|.+.++...+ +.   ..+.......+.|++|++|| .|+..+
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~E-L~eL~~mL~e~~~l~~apLLVfANKkQDlp~A  263 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDE-FSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR  263 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHH-HHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHH-HHHHHHHhcchhhcCCCeEEEEeCCcccccCC
Confidence            34678899999999999999999999999887652222 22   22322211357899999997 588543

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.06  E-value=1.2e-07  Score=72.30  Aligned_cols=102  Identities=14%  Similarity=0.065  Sum_probs=56.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc--ccccc--------cc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER--FRTLT--------SS   80 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~--------~~   80 (154)
                      ....+|+++|.+|+||||+.++|...-.....++.............+......+||..|.+.  ....+        ..
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            345789999999999999999987542211112211100000000001112335788888632  23322        44


Q ss_pred             cccCccEEEEEEECCCcchHHHHHHHHHHHHhhh
Q 031704           81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLY  114 (154)
Q Consensus        81 ~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~  114 (154)
                      ++...++.++|+|.++. +.+.... |.+.+...
T Consensus       117 ~l~~~~G~~vV~D~tn~-~~~~R~~-~~~~~~~~  148 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNT-TRERRAM-IFNFGEQN  148 (469)
T ss_dssp             HHHTTCCSEEEEESCCC-SHHHHHH-HHHHHHHH
T ss_pred             HHHhCCCCEEEEeCCCC-CHHHHHH-HHHHHHhc
Confidence            45567888999999987 3444444 66666554

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.04  E-value=9.1e-06  Score=61.42  Aligned_cols=66  Identities=20%  Similarity=0.185  Sum_probs=38.5

Q ss_pred             EEEEEEEeCCCccccccc----c--cccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCC-c-EEEEEeCCCC
Q 031704           60 KMKLAIWDTAGQERFRTL----T--SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC-I-KLLVGNKVDK  131 (154)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~----~--~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~-~ivv~nK~Dl  131 (154)
                      .+.+.++||||.......    .  ...+..+|.+++|+|+.....   ...    ....+  .... | ..+|.||+|.
T Consensus       180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~----~~~~~--~~~~~~i~gvVlnK~D~  250 (432)
T 2v3c_C          180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGI----QAKAF--KEAVGEIGSIIVTKLDG  250 (432)
T ss_dssp             SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHH----HHHHH--HTTSCSCEEEEEECSSS
T ss_pred             CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHH----HHHHH--hhcccCCeEEEEeCCCC
Confidence            346789999996532111    1  111236899999999876432   111    12222  1123 4 7899999998


Q ss_pred             CCc
Q 031704          132 VCP  134 (154)
Q Consensus       132 ~~~  134 (154)
                      ...
T Consensus       251 ~~~  253 (432)
T 2v3c_C          251 SAK  253 (432)
T ss_dssp             CST
T ss_pred             ccc
Confidence            643

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.02  E-value=6.1e-06  Score=62.51  Aligned_cols=27  Identities=19%  Similarity=0.044  Sum_probs=23.2

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcC
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ..+..-|+|+|++++|||+|+|++++.
T Consensus        64 ~~~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence            345677999999999999999999863

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=97.93  E-value=3.6e-06  Score=62.32  Aligned_cols=58  Identities=17%  Similarity=0.281  Sum_probs=44.3

Q ss_pred             CcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        70 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ..+.|......+.+.++++++|+|++++.      ..|...+....  .+.|+++|+||+||.++.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~  112 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFV--GNNKVLLVGNKADLIPKS  112 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHS--SSSCEEEEEECGGGSCTT
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHh--CCCcEEEEEEChhcCCcc
Confidence            35778888888888899999999999853      22666666652  378999999999997543

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.87  E-value=8.6e-06  Score=58.18  Aligned_cols=64  Identities=16%  Similarity=0.021  Sum_probs=41.1

Q ss_pred             EEeCCCcc-cccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           65 IWDTAGQE-RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        65 i~D~~g~~-~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      +-..||+. .........+.++|+++.|+|+.++.+....      .+....  .+.|.++|+||+||.+...
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~------~l~~~l--~~kp~ilVlNK~DL~~~~~   67 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP------MIEDIL--KNKPRIMLLNKADKADAAV   67 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH------HHHHHC--SSSCEEEEEECGGGSCHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH------HHHHHH--CCCCEEEEEECcccCCHHH
Confidence            34678875 3445566678999999999999988776421      111111  4688999999999987543

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=97.78  E-value=5.5e-06  Score=61.39  Aligned_cols=57  Identities=18%  Similarity=0.251  Sum_probs=43.1

Q ss_pred             CcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        70 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      .++.|......+.++++++++|+|++++.+     . |...+....  .+.|+++|+||+||.++
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s-~~~~l~~~l--~~~piilV~NK~DLl~~  113 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----S-FIPGLPRFA--ADNPILLVGNKADLLPR  113 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----G-CCSSHHHHC--TTSCEEEEEECGGGSCT
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----c-hhhHHHHHh--CCCCEEEEEEChhcCCC
Confidence            367888888888888999999999999774     1 444444442  36799999999999755

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.76  E-value=1.4e-05  Score=60.34  Aligned_cols=66  Identities=23%  Similarity=0.231  Sum_probs=37.9

Q ss_pred             EEEEEEeCCCccc--cccc----cccc--ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           61 MKLAIWDTAGQER--FRTL----TSSY--YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        61 ~~~~i~D~~g~~~--~~~~----~~~~--~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                      +.+.++||||...  ....    ....  .-..+.+++|+|+...........    .+...    -.+..+|.||.|..
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~----~f~~~----~~~~gVIlTKlD~~  251 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLAS----RFHQA----SPIGSVIITKMDGT  251 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHH----HHHHH----CSSEEEEEECGGGC
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHH----HHhcc----cCCcEEEEeccccc
Confidence            4677999999543  1111    1111  114589999999886543322222    22222    13467899999986


Q ss_pred             Cc
Q 031704          133 CP  134 (154)
Q Consensus       133 ~~  134 (154)
                      ..
T Consensus       252 a~  253 (433)
T 3kl4_A          252 AK  253 (433)
T ss_dssp             SC
T ss_pred             cc
Confidence            44

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.66  E-value=3e-05  Score=51.65  Aligned_cols=22  Identities=36%  Similarity=0.746  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      +++++|++|+|||||++.+.+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988764

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.64  E-value=5.5e-05  Score=54.40  Aligned_cols=66  Identities=21%  Similarity=0.217  Sum_probs=38.3

Q ss_pred             EEEEEEEeCCCccc--ccc-ccc-----ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCc-EEEEEeCCC
Q 031704           60 KMKLAIWDTAGQER--FRT-LTS-----SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVD  130 (154)
Q Consensus        60 ~~~~~i~D~~g~~~--~~~-~~~-----~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D  130 (154)
                      .+.+.++||||...  ... ...     .....+|.+++|.|+.....   ... ..+.+..     ..+ ..+|.||.|
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~-~~~~~~~-----~~~i~gvVlnk~D  250 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYD-LASKFNQ-----ASKIGTIIITKMD  250 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHH-HHHHHHH-----TCTTEEEEEECGG
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHH-HHHHHHh-----hCCCCEEEEeCCC
Confidence            34688999999765  221 111     12346899999999875322   111 1112221     234 678999999


Q ss_pred             CCCc
Q 031704          131 KVCP  134 (154)
Q Consensus       131 l~~~  134 (154)
                      ....
T Consensus       251 ~~~~  254 (297)
T 1j8m_F          251 GTAK  254 (297)
T ss_dssp             GCTT
T ss_pred             CCcc
Confidence            8643

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.62  E-value=0.00015  Score=52.32  Aligned_cols=57  Identities=14%  Similarity=0.138  Sum_probs=38.3

Q ss_pred             ccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           76 TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        76 ~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      .+.+..+.++|.+++|.|+.++..-....+.++...    ...++|.++|+||+||.++..
T Consensus        78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~----~~~~~~~vivlnK~DL~~~~~  134 (307)
T 1t9h_A           78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLV----EANDIQPIICITKMDLIEDQD  134 (307)
T ss_dssp             EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHH----HTTTCEEEEEEECGGGCCCHH
T ss_pred             hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH----HHCCCCEEEEEECCccCchhh
Confidence            334445778999999999987655443322122222    345788899999999987644

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.62  E-value=3.2e-05  Score=51.36  Aligned_cols=22  Identities=27%  Similarity=0.610  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -++++|++|||||||++.+.+.
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.58  E-value=3.9e-05  Score=51.83  Aligned_cols=21  Identities=48%  Similarity=0.643  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      .++++|++|||||||++.+.+
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999999875

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.46  E-value=6.8e-05  Score=50.43  Aligned_cols=22  Identities=23%  Similarity=0.481  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -++++|++||||||+++.+.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5889999999999999998764

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.45  E-value=4.7e-05  Score=55.01  Aligned_cols=23  Identities=39%  Similarity=0.658  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|++|+|||||+|.+.+..
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHhcccc
Confidence            78999999999999999998754

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.45  E-value=7.3e-05  Score=49.75  Aligned_cols=23  Identities=39%  Similarity=0.463  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -.++++|++||||||+++.+.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            36899999999999999999875

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.45  E-value=6.9e-05  Score=50.80  Aligned_cols=22  Identities=36%  Similarity=0.513  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -++++|++|||||||++.+.+-
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5789999999999999998764

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.42  E-value=7.8e-05  Score=51.08  Aligned_cols=22  Identities=41%  Similarity=0.709  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .++++|++|||||||++.+.+.
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5789999999999999998764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.42  E-value=0.00033  Score=50.41  Aligned_cols=22  Identities=45%  Similarity=0.652  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      -++++|++|+|||||+|.+. ..
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SC
T ss_pred             EEEEECCCCCCHHHHHHHHH-Hh
Confidence            57899999999999999998 54

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.42  E-value=8.5e-05  Score=50.26  Aligned_cols=23  Identities=43%  Similarity=0.622  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      --|+++|++|+|||||++.|...
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECcCCCCHHHHHHHHHhh
Confidence            35889999999999999999853

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.41  E-value=8.3e-05  Score=51.13  Aligned_cols=22  Identities=27%  Similarity=0.456  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -++++|++|||||||++.+.+.
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6889999999999999998764

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.41  E-value=7.6e-05  Score=49.16  Aligned_cols=20  Identities=45%  Similarity=0.590  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 031704           15 KLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~   34 (154)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999543

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.41  E-value=0.0002  Score=54.09  Aligned_cols=23  Identities=26%  Similarity=0.262  Sum_probs=19.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHh
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~   34 (154)
                      ....|+++|..|+||||++..|.
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA  121 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLG  121 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34678889999999999998876

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.37  E-value=0.00012  Score=49.70  Aligned_cols=24  Identities=33%  Similarity=0.303  Sum_probs=20.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ....++++|++|||||||++.+.+
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446899999999999999998764

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.37  E-value=0.00011  Score=49.95  Aligned_cols=23  Identities=39%  Similarity=0.525  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      -|+++|++||||||+++.|....
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHST
T ss_pred             EEEEECcCCCCHHHHHHHHHhhC
Confidence            58899999999999999998653

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.34  E-value=0.00013  Score=48.98  Aligned_cols=21  Identities=43%  Similarity=0.705  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (154)
                      |+++||+|+|||||+++|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999754

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.31  E-value=0.00013  Score=50.68  Aligned_cols=23  Identities=35%  Similarity=0.405  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999988743

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.27  E-value=0.00016  Score=48.91  Aligned_cols=23  Identities=43%  Similarity=0.601  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .-|+++|++||||||+++.|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999998653

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.27  E-value=0.00016  Score=48.61  Aligned_cols=29  Identities=24%  Similarity=0.392  Sum_probs=22.7

Q ss_pred             cCCCceeEEEEEEcCCCCCHHHHHHHHhc
Q 031704            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus         7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      +........|++.|++||||||+.+.|..
T Consensus        14 ~~~~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           14 LVPRGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             --CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34445557899999999999999998854

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.26  E-value=0.00018  Score=49.12  Aligned_cols=22  Identities=32%  Similarity=0.401  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..|+++|++||||||+.+.+.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.25  E-value=0.00023  Score=47.80  Aligned_cols=26  Identities=23%  Similarity=0.369  Sum_probs=21.4

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ......|++.|.+||||||+.+.|..
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            33446899999999999999998863

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.25  E-value=0.00017  Score=49.73  Aligned_cols=23  Identities=43%  Similarity=0.476  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|||||||++.+.+-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999988753

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.25  E-value=0.00017  Score=48.52  Aligned_cols=24  Identities=38%  Similarity=0.537  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      ..|+++|++||||||+++.+.+.-
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            368999999999999999987654

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.24  E-value=0.00017  Score=47.96  Aligned_cols=21  Identities=33%  Similarity=0.525  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      -++++|++||||||+++.+.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.24  E-value=0.0002  Score=48.48  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..|+++|+.|||||||++.+.+
T Consensus         7 ~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            7 FVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998866

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.24  E-value=0.00018  Score=46.90  Aligned_cols=23  Identities=35%  Similarity=0.468  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      -++++|+.|||||||++.+.+.-
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58899999999999999987754

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.24  E-value=0.00017  Score=53.13  Aligned_cols=24  Identities=38%  Similarity=0.461  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF   38 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~   38 (154)
                      .++++|++|+|||||+|.+.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            589999999999999999997653

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.24  E-value=0.00018  Score=47.00  Aligned_cols=22  Identities=32%  Similarity=0.584  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .|+++|++||||||+.+.+.+.
T Consensus         6 ~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            6 NIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998753

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.23  E-value=0.00019  Score=46.74  Aligned_cols=20  Identities=30%  Similarity=0.403  Sum_probs=18.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHH
Q 031704           14 FKLLLIGDSGVGKSTLLLSF   33 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l   33 (154)
                      +-|++.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            36899999999999999999

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=97.22  E-value=0.0006  Score=51.68  Aligned_cols=64  Identities=22%  Similarity=0.208  Sum_probs=39.5

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhc------------------CCCCC----CCCcceeeeEEEEEEE---CCeEEEEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTS------------------DTFEE----LSPTIGVDFKIKHVAL---GGKKMKLA   64 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~------------------~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~   64 (154)
                      ..+..=|+|+|+.++|||+|+|.++.                  ..|..    ...|.|+-.+...+..   ++..+.+.
T Consensus        64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl  143 (457)
T 4ido_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL  143 (457)
T ss_dssp             TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred             CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence            34566778999999999999996541                  12211    1123333233222222   45678899


Q ss_pred             EEeCCCccc
Q 031704           65 IWDTAGQER   73 (154)
Q Consensus        65 i~D~~g~~~   73 (154)
                      ++||.|...
T Consensus       144 llDTEG~~d  152 (457)
T 4ido_A          144 LMDTQGTFD  152 (457)
T ss_dssp             EEEECCBTC
T ss_pred             EEeccCCCC
Confidence            999999543

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.21  E-value=0.00022  Score=46.44  Aligned_cols=21  Identities=24%  Similarity=0.240  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      .|++.|++||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999864

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.20  E-value=0.00021  Score=49.80  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|||||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998753

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.19  E-value=0.00021  Score=48.09  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..|+++|++||||||+++.+.+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.19  E-value=0.00021  Score=50.85  Aligned_cols=23  Identities=39%  Similarity=0.603  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|||||||++.+.+--
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            46889999999999999998743

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.19  E-value=0.00021  Score=50.43  Aligned_cols=23  Identities=39%  Similarity=0.489  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      -++++|+.|||||||++.+.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999998753

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.19  E-value=0.00024  Score=49.35  Aligned_cols=21  Identities=24%  Similarity=0.566  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHh
Q 031704           14 FKLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~   34 (154)
                      ..|+++|++||||||+++.+.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999988

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.18  E-value=0.00023  Score=46.71  Aligned_cols=22  Identities=41%  Similarity=0.480  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999986

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.18  E-value=0.00024  Score=49.33  Aligned_cols=23  Identities=30%  Similarity=0.593  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998753

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.17  E-value=0.00023  Score=48.72  Aligned_cols=23  Identities=30%  Similarity=0.501  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|||||||++.+.+-.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46899999999999999998753

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.17  E-value=0.00021  Score=50.37  Aligned_cols=22  Identities=36%  Similarity=0.489  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      -.++++|++||||||+++.+.+
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHH
Confidence            3689999999999999999875

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.17  E-value=0.00021  Score=48.49  Aligned_cols=21  Identities=29%  Similarity=0.469  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      +|++.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998853

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.17  E-value=0.00022  Score=50.42  Aligned_cols=23  Identities=43%  Similarity=0.559  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|||||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            46889999999999999998753

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.16  E-value=0.00026  Score=49.32  Aligned_cols=22  Identities=32%  Similarity=0.371  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .++++|+.|||||||++.+.+-
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6789999999999999998864

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.16  E-value=0.00024  Score=51.23  Aligned_cols=21  Identities=38%  Similarity=0.430  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      .++++|++|+|||||++.+.+
T Consensus       128 ~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhh
Confidence            689999999999999999875

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.15  E-value=0.00026  Score=49.48  Aligned_cols=23  Identities=35%  Similarity=0.351  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|||||||++.+.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999988753

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.15  E-value=0.00024  Score=49.99  Aligned_cols=23  Identities=43%  Similarity=0.517  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998753

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.14  E-value=0.00024  Score=48.26  Aligned_cols=21  Identities=33%  Similarity=0.441  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      +|++.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999853

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.14  E-value=0.00029  Score=48.66  Aligned_cols=23  Identities=30%  Similarity=0.601  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|||||||++.+.+--
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998753

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.13  E-value=0.00026  Score=50.02  Aligned_cols=23  Identities=39%  Similarity=0.524  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|||||||++.+.+-.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            47899999999999999988753

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.12  E-value=0.00034  Score=45.86  Aligned_cols=22  Identities=32%  Similarity=0.446  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..|+++|++||||||+++.+.+
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999998754

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.12  E-value=0.00026  Score=49.23  Aligned_cols=23  Identities=35%  Similarity=0.491  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|||||||++.+.+-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998753

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.12  E-value=0.00024  Score=47.68  Aligned_cols=22  Identities=36%  Similarity=0.597  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      +++++|+.|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5789999999999999988753

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.11  E-value=0.00028  Score=49.38  Aligned_cols=22  Identities=41%  Similarity=0.502  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .++++|+.|||||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999885

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.11  E-value=0.00032  Score=47.17  Aligned_cols=22  Identities=36%  Similarity=0.605  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      -.|+++|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3799999999999999998863

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.11  E-value=0.00029  Score=49.37  Aligned_cols=23  Identities=48%  Similarity=0.635  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|||||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999988754

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.10  E-value=0.0003  Score=46.18  Aligned_cols=21  Identities=33%  Similarity=0.515  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      -|++.|++||||||+.+.|..
T Consensus         5 ~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.10  E-value=0.00029  Score=49.56  Aligned_cols=23  Identities=35%  Similarity=0.420  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|||||||++.+.+-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998753

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.10  E-value=0.00026  Score=50.87  Aligned_cols=24  Identities=38%  Similarity=0.394  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF   38 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~   38 (154)
                      .++++|++|+|||||+|.+.+...
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             eEEEECCCCCcHHHHHHHhccccc
Confidence            578999999999999999987654

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.10  E-value=0.00023  Score=48.48  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .++++|+.|||||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.10  E-value=0.00032  Score=49.42  Aligned_cols=22  Identities=32%  Similarity=0.394  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .++++|+.|||||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5789999999999999999874

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.10  E-value=0.0003  Score=49.73  Aligned_cols=22  Identities=32%  Similarity=0.490  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .++++|+.|||||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999885

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.10  E-value=0.0003  Score=47.35  Aligned_cols=23  Identities=35%  Similarity=0.384  Sum_probs=20.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..-|+++|++||||||+.+.+.+
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998764

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.09  E-value=0.00037  Score=46.14  Aligned_cols=21  Identities=38%  Similarity=0.482  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      .|++.|++||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998854

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.09  E-value=0.00032  Score=46.49  Aligned_cols=23  Identities=35%  Similarity=0.342  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .-++++|++|+|||||+++++..
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            46889999999999999999864

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.09  E-value=0.00029  Score=47.96  Aligned_cols=22  Identities=27%  Similarity=0.507  Sum_probs=19.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ++|+++|+|||||+|...++..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998864

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.08  E-value=0.0003  Score=49.84  Aligned_cols=23  Identities=30%  Similarity=0.351  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|||||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998753

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.08  E-value=0.00031  Score=47.20  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..|+++|++||||||+.+.|..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998854

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.07  E-value=0.00048  Score=45.64  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=21.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      .....|+++|.+|+||||+++.+..
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3456799999999999999998864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.07  E-value=0.00036  Score=49.72  Aligned_cols=23  Identities=39%  Similarity=0.530  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|||||||++.+.+-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999998743

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.07  E-value=0.00045  Score=45.62  Aligned_cols=22  Identities=23%  Similarity=0.453  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..|+++|++||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998863

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.07  E-value=0.0003  Score=46.43  Aligned_cols=23  Identities=30%  Similarity=0.492  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -.++++|++|+|||||++.+.+.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988754

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.06  E-value=0.00038  Score=46.58  Aligned_cols=21  Identities=33%  Similarity=0.599  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999998865

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.06  E-value=0.00032  Score=47.80  Aligned_cols=21  Identities=24%  Similarity=0.382  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      -++++|++|||||||++.+.+
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999986

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.05  E-value=0.00034  Score=49.10  Aligned_cols=23  Identities=39%  Similarity=0.489  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.05  E-value=0.0002  Score=49.30  Aligned_cols=22  Identities=32%  Similarity=0.419  Sum_probs=14.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHh-cC
Q 031704           15 KLLLIGDSGVGKSTLLLSFT-SD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~-~~   36 (154)
                      -++++|++||||||+++.+. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58899999999999999998 54

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.04  E-value=0.00028  Score=51.98  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=21.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .-+++++|++|||||||++.+.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999998764

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.04  E-value=0.0004  Score=46.66  Aligned_cols=21  Identities=38%  Similarity=0.591  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      +|+++|++||||||+.+.+.+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            699999999999999999875

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.04  E-value=0.00044  Score=45.86  Aligned_cols=22  Identities=23%  Similarity=0.449  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..|++.|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998854

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.03  E-value=0.00036  Score=49.34  Aligned_cols=23  Identities=43%  Similarity=0.547  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|||||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999999988753

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.02  E-value=0.00036  Score=50.50  Aligned_cols=25  Identities=28%  Similarity=0.296  Sum_probs=21.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ....-++++|++|||||||++.+.+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHh
Confidence            3456899999999999999998765

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.02  E-value=0.00043  Score=45.73  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998853

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.02  E-value=0.00018  Score=47.59  Aligned_cols=22  Identities=32%  Similarity=0.460  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .++++|++|||||||++.+.+-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998764

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.01  E-value=0.00059  Score=46.01  Aligned_cols=25  Identities=24%  Similarity=0.313  Sum_probs=21.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ....|+++|++||||||+.+.+.+.
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999999999998764

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.01  E-value=0.00049  Score=47.85  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=21.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ...+|++.|++||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999999863

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.00  E-value=0.00037  Score=47.35  Aligned_cols=21  Identities=24%  Similarity=0.393  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      +|++.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998854

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.00  E-value=0.00046  Score=48.75  Aligned_cols=23  Identities=35%  Similarity=0.640  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|+|||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998754

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.00  E-value=0.00053  Score=46.18  Aligned_cols=22  Identities=36%  Similarity=0.525  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      +.|+++|++||||||+.+.+.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999965

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.99  E-value=0.00047  Score=45.59  Aligned_cols=22  Identities=23%  Similarity=0.218  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..|++.|++||||||+.+.|..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998753

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.98  E-value=0.00049  Score=48.00  Aligned_cols=27  Identities=19%  Similarity=0.196  Sum_probs=21.1

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhc
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      .....+.|++.|++||||||+.+.|..
T Consensus        18 ~~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           18 NGGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            344567899999999999999998754

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.97  E-value=0.00022  Score=50.37  Aligned_cols=59  Identities=15%  Similarity=0.133  Sum_probs=37.9

Q ss_pred             CCCccc-ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           68 TAGQER-FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        68 ~~g~~~-~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      .||+.. ........+.++|+++.|+|+.++.+....      .+. . .  ++|.++|+||+||.++..
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~------~l~-l-l--~k~~iivlNK~DL~~~~~   63 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY------GVD-F-S--RKETIILLNKVDIADEKT   63 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT------TSC-C-T--TSEEEEEEECGGGSCHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh------HHH-h-c--CCCcEEEEECccCCCHHH
Confidence            456542 223455668899999999999987765432      111 1 1  788999999999987543

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.97  E-value=0.00028  Score=50.91  Aligned_cols=22  Identities=45%  Similarity=0.560  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .++++|+.|||||||++.+.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            6889999999999999988764

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.96  E-value=0.00044  Score=50.98  Aligned_cols=23  Identities=43%  Similarity=0.637  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      -++++|+.|||||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            46889999999999999998754

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.95  E-value=0.00044  Score=50.96  Aligned_cols=21  Identities=38%  Similarity=0.569  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      .++++|++||||||+++.+++
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            799999999999999999875

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.95  E-value=0.00059  Score=45.91  Aligned_cols=22  Identities=23%  Similarity=0.270  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..|++.|++||||||+.+.|..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.94  E-value=0.00046  Score=47.05  Aligned_cols=22  Identities=32%  Similarity=0.607  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..|+++|++||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998854

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.93  E-value=0.00062  Score=45.10  Aligned_cols=22  Identities=23%  Similarity=0.484  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..|++.|.+||||||+.+.|..
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998753

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.92  E-value=0.00055  Score=49.01  Aligned_cols=23  Identities=30%  Similarity=0.601  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|||||||++.+.+-.
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57899999999999999988753

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.91  E-value=0.00061  Score=45.91  Aligned_cols=22  Identities=23%  Similarity=0.111  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..|++.|.+||||||+.+.|..
T Consensus        11 ~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           11 KFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.91  E-value=0.00053  Score=45.52  Aligned_cols=23  Identities=22%  Similarity=0.580  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .+|+++|++||||||+.+.|...
T Consensus        11 ~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           11 INILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            57999999999999999988654

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.90  E-value=0.00049  Score=45.16  Aligned_cols=21  Identities=38%  Similarity=0.581  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      +|+++|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999998753

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.90  E-value=0.00055  Score=50.42  Aligned_cols=23  Identities=35%  Similarity=0.446  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      -++++|+.|||||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            46889999999999999998754

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.89  E-value=0.00055  Score=49.88  Aligned_cols=23  Identities=26%  Similarity=0.466  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|++|+|||||++.+.+--
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998753

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.89  E-value=0.00052  Score=47.04  Aligned_cols=21  Identities=29%  Similarity=0.580  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHh
Q 031704           14 FKLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~   34 (154)
                      ..|++.|++||||||+.+.|.
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999885

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.89  E-value=0.00058  Score=44.34  Aligned_cols=21  Identities=33%  Similarity=0.354  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      +|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.89  E-value=0.00072  Score=48.26  Aligned_cols=24  Identities=29%  Similarity=0.346  Sum_probs=20.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ...-|++.|++||||||+.+.+..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999864

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.89  E-value=0.00053  Score=50.58  Aligned_cols=22  Identities=27%  Similarity=0.670  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .++++|++|+|||||++.+.+.
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7899999999999999999864

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.88  E-value=0.00081  Score=48.13  Aligned_cols=24  Identities=21%  Similarity=0.301  Sum_probs=20.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHh
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~   34 (154)
                      .....|+|.|++|||||||++.+.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~   52 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIY   52 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            345789999999999999998764

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.88  E-value=0.00059  Score=50.69  Aligned_cols=23  Identities=39%  Similarity=0.535  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            46889999999999999998754

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.88  E-value=0.0006  Score=50.39  Aligned_cols=23  Identities=39%  Similarity=0.408  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      -++++|+.|||||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            46789999999999999988754

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.87  E-value=0.0006  Score=50.33  Aligned_cols=23  Identities=43%  Similarity=0.567  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      -++++|+.|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            46889999999999999998754

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.87  E-value=0.00059  Score=50.32  Aligned_cols=23  Identities=39%  Similarity=0.511  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      -++++|+.|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            46889999999999999998753

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.85  E-value=0.00061  Score=46.94  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=20.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ...+|+++|.+||||||+.+.|..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998853

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.85  E-value=0.00059  Score=46.51  Aligned_cols=22  Identities=36%  Similarity=0.501  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ++|+++|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998853

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.85  E-value=0.00074  Score=46.91  Aligned_cols=23  Identities=26%  Similarity=0.312  Sum_probs=20.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..-|.++|+.||||||+++.+.+
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998865

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.85  E-value=0.00047  Score=44.41  Aligned_cols=23  Identities=30%  Similarity=0.596  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|++|+|||+|++.+.+.-
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999988643

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.85  E-value=0.00062  Score=48.27  Aligned_cols=21  Identities=33%  Similarity=0.604  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (154)
                      ++++|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999998763

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.84  E-value=0.001  Score=48.36  Aligned_cols=25  Identities=24%  Similarity=0.224  Sum_probs=21.2

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHh
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~   34 (154)
                      ....+-|.++|++|||||||++.+.
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~  113 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLK  113 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH
Confidence            3455789999999999999998874

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.84  E-value=0.00065  Score=50.35  Aligned_cols=23  Identities=35%  Similarity=0.502  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      -++++|+.|||||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            46889999999999999998754

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.83  E-value=0.00067  Score=50.25  Aligned_cols=23  Identities=39%  Similarity=0.505  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      -++++|+.|||||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            46889999999999999988753

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.83  E-value=0.00069  Score=50.17  Aligned_cols=22  Identities=36%  Similarity=0.489  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      -.++++|++||||||+++.+.+
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999999875

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.83  E-value=0.00066  Score=46.49  Aligned_cols=21  Identities=29%  Similarity=0.415  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      .|++.|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998853

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.81  E-value=0.00074  Score=44.47  Aligned_cols=22  Identities=45%  Similarity=0.614  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..|++.|++|+||||+.+.+..
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHH
Confidence            4689999999999999998863

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.81  E-value=0.00073  Score=47.03  Aligned_cols=21  Identities=38%  Similarity=0.725  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (154)
                      ++++|++|+|||||++.+.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998864

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.80  E-value=0.00074  Score=47.29  Aligned_cols=21  Identities=19%  Similarity=0.385  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      -|+++|++||||||+.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.80  E-value=0.00087  Score=43.90  Aligned_cols=23  Identities=30%  Similarity=0.602  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -.+++.|++|+|||++++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988654

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.79  E-value=0.00094  Score=44.61  Aligned_cols=24  Identities=29%  Similarity=0.285  Sum_probs=21.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ...|++.|++||||||+.+.|...
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            468999999999999999998765

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.79  E-value=0.00088  Score=44.84  Aligned_cols=23  Identities=17%  Similarity=0.234  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ..|++.|++||||||+.+.|...
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            47999999999999999998764

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.79  E-value=0.00098  Score=48.00  Aligned_cols=24  Identities=25%  Similarity=0.343  Sum_probs=20.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ...-|+++|+.|||||||++.+.+
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998865

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.79  E-value=0.00074  Score=47.19  Aligned_cols=25  Identities=32%  Similarity=0.365  Sum_probs=21.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      .....|+++|++||||||+.+.+..
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3446899999999999999998864

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.78  E-value=0.00075  Score=48.64  Aligned_cols=22  Identities=32%  Similarity=0.536  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      -.++++|+.||||||+++.+.+
T Consensus       103 ~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            4788999999999999998863

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.78  E-value=0.00076  Score=52.03  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|++||||||+++.+++--
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            48999999999999999998643

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.77  E-value=0.00087  Score=44.17  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..+.++|++|+||||++.++..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999875

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.77  E-value=0.00079  Score=45.93  Aligned_cols=22  Identities=23%  Similarity=0.370  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998853

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.77  E-value=0.00074  Score=50.81  Aligned_cols=22  Identities=36%  Similarity=0.510  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -++|+|++||||||+++.+++.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999998864

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.76  E-value=0.0011  Score=45.67  Aligned_cols=26  Identities=35%  Similarity=0.519  Sum_probs=22.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ....-|++.|+.||||||+++.+.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            34467999999999999999998764

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.75  E-value=0.0003  Score=47.55  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      -|++.|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999864

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.75  E-value=0.00096  Score=44.32  Aligned_cols=22  Identities=23%  Similarity=0.385  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..|++.|++||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998853

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.75  E-value=0.00096  Score=49.25  Aligned_cols=23  Identities=43%  Similarity=0.637  Sum_probs=20.9

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHH
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSF   33 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l   33 (154)
                      .+..||+++|.++|||||++.++
T Consensus        31 ~~~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHH
Confidence            45799999999999999999986

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.75  E-value=0.0012  Score=43.66  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..|++.|.+||||||+.+.|..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998853

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.75  E-value=0.0011  Score=44.61  Aligned_cols=24  Identities=29%  Similarity=0.182  Sum_probs=20.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ...-|.++|++|+||||+++.+.+
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998864

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.75  E-value=0.00096  Score=46.63  Aligned_cols=21  Identities=33%  Similarity=0.408  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHh
Q 031704           14 FKLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~   34 (154)
                      ..|+++|++||||||+++.+.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999987

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.74  E-value=0.00082  Score=50.10  Aligned_cols=22  Identities=45%  Similarity=0.656  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .++++|++|||||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            4789999999999999998863

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.72  E-value=0.0011  Score=44.21  Aligned_cols=22  Identities=27%  Similarity=0.425  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..|++.|++||||||+.+.|..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998854

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.71  E-value=0.00056  Score=50.22  Aligned_cols=23  Identities=22%  Similarity=0.431  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      -++++|+.|||||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            47899999999999999998754

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.71  E-value=0.00096  Score=45.75  Aligned_cols=20  Identities=25%  Similarity=0.521  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 031704           16 LLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~   35 (154)
                      |+++|+|||||+|...+|..
T Consensus        32 I~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56789999999999988753

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.71  E-value=0.00095  Score=45.41  Aligned_cols=21  Identities=33%  Similarity=0.634  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      -++++|++|+|||||+..+.+
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478899999999999999874

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.71  E-value=0.00093  Score=44.26  Aligned_cols=21  Identities=24%  Similarity=0.272  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.70  E-value=0.00091  Score=45.10  Aligned_cols=22  Identities=27%  Similarity=0.240  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..|++.|.+||||||+.+.|..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.69  E-value=0.0011  Score=43.22  Aligned_cols=21  Identities=19%  Similarity=0.474  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      .|++.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998854

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.69  E-value=0.0013  Score=44.73  Aligned_cols=22  Identities=36%  Similarity=0.588  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      +.|++.|.+||||||+.+.|..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999999864

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.68  E-value=0.00099  Score=47.96  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=19.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      .--++++|+.||||||+++.+.+
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            35788999999999999998764

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.67  E-value=0.0011  Score=46.01  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=19.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHh
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~   34 (154)
                      .+.|++.|++|+||||+.+.+.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999885

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.66  E-value=0.0013  Score=46.08  Aligned_cols=22  Identities=36%  Similarity=0.567  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..|++.|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4799999999999999998864

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.65  E-value=0.0011  Score=48.35  Aligned_cols=24  Identities=21%  Similarity=0.501  Sum_probs=20.7

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..--++++|+.||||||+++.+.+
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999998864

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.65  E-value=0.0011  Score=43.64  Aligned_cols=21  Identities=38%  Similarity=0.520  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      .|+++|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998754

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.64  E-value=0.0011  Score=46.82  Aligned_cols=21  Identities=38%  Similarity=0.725  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (154)
                      ++++|++|+|||||++.+.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHHH
Confidence            899999999999999998864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.64  E-value=0.0011  Score=48.28  Aligned_cols=22  Identities=41%  Similarity=0.662  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .++++|++|+|||||++.+.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999998764

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.60  E-value=0.0013  Score=43.21  Aligned_cols=21  Identities=24%  Similarity=0.284  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      -.+++|+.|+|||||+..+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            357889999999999999754

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.60  E-value=0.0016  Score=42.82  Aligned_cols=22  Identities=32%  Similarity=0.528  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..|+++|.+||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999998865

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.60  E-value=0.0035  Score=39.80  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ..+++.|++|+|||++.+.+...
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CcEEEECCCCccHHHHHHHHHHh
Confidence            35899999999999999988754

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.60  E-value=0.0015  Score=42.41  Aligned_cols=22  Identities=41%  Similarity=0.483  Sum_probs=19.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      -.|++.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999998853

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.59  E-value=0.00055  Score=50.36  Aligned_cols=23  Identities=26%  Similarity=0.483  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      -++++|+.|||||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999998754

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.58  E-value=0.00085  Score=44.13  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=15.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..|++.|.+||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999863

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.56  E-value=0.0013  Score=46.87  Aligned_cols=21  Identities=29%  Similarity=0.449  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      -++++|++|+|||||+..+.+
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~   57 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQAL   57 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            478999999999999998764

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.56  E-value=0.00099  Score=46.72  Aligned_cols=27  Identities=22%  Similarity=0.198  Sum_probs=21.5

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcC
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ..+...|++.|..||||||+++.|...
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHh
Confidence            345578999999999999999988653

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.55  E-value=0.0011  Score=43.25  Aligned_cols=23  Identities=30%  Similarity=0.611  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ..+++.|++|+|||+++..+...
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            46799999999999999988653

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.53  E-value=0.0016  Score=47.18  Aligned_cols=25  Identities=36%  Similarity=0.458  Sum_probs=21.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCC
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      ..-++++|+.|||||||++.+.+..
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            3467889999999999999999753

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.52  E-value=0.0017  Score=44.30  Aligned_cols=23  Identities=17%  Similarity=0.281  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ..+++.|++|+|||++++.+...
T Consensus        53 ~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           53 QAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999988653

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.52  E-value=0.0095  Score=43.92  Aligned_cols=19  Identities=32%  Similarity=0.587  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 031704           16 LLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~   34 (154)
                      .+++|+.|||||||++.+.
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5589999999999999875

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.51  E-value=0.0016  Score=44.04  Aligned_cols=21  Identities=29%  Similarity=0.240  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999986

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.50  E-value=0.0016  Score=44.67  Aligned_cols=22  Identities=14%  Similarity=0.258  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -++++|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999873

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.50  E-value=0.0014  Score=49.89  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -.++++|+.|||||||++.+.+-
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCc
Confidence            36899999999999999998764

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.50  E-value=0.0016  Score=45.38  Aligned_cols=22  Identities=27%  Similarity=0.607  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .++++|++|+|||++++.+.+.
T Consensus        47 ~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHH
Confidence            5999999999999999998753

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.49  E-value=0.0016  Score=44.84  Aligned_cols=24  Identities=21%  Similarity=0.254  Sum_probs=20.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ...-|++.|++||||||+++.+..
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999998864

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.47  E-value=0.0022  Score=45.60  Aligned_cols=23  Identities=39%  Similarity=0.456  Sum_probs=20.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHh
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~   34 (154)
                      ..+.|++.|.+||||||+.+.|.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999885

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.47  E-value=0.0014  Score=45.88  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      -.|+++|++||||||+.+.+..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999998854

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.47  E-value=0.0018  Score=47.54  Aligned_cols=23  Identities=39%  Similarity=0.530  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      ++.++|+.|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            78999999999999999998864

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.45  E-value=0.0018  Score=43.86  Aligned_cols=23  Identities=35%  Similarity=0.414  Sum_probs=19.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..-|+++|.+|+||||+.+.+..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999998754

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.44  E-value=0.0017  Score=47.84  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=19.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      .--++++|+.||||||++..+.+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Confidence            35789999999999999998764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.42  E-value=0.0018  Score=50.61  Aligned_cols=22  Identities=41%  Similarity=0.495  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .++++|+.|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            6889999999999999998864

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.42  E-value=0.0022  Score=42.91  Aligned_cols=23  Identities=39%  Similarity=0.554  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ..+++.|++|+|||+|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999988753

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.41  E-value=0.0018  Score=49.67  Aligned_cols=23  Identities=35%  Similarity=0.634  Sum_probs=19.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      .--++++|+.||||||+++.+.+
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHH
Confidence            35789999999999999998764

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.40  E-value=0.0019  Score=45.99  Aligned_cols=22  Identities=41%  Similarity=0.480  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999875

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.39  E-value=0.0043  Score=39.44  Aligned_cols=25  Identities=20%  Similarity=0.163  Sum_probs=21.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF   38 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~   38 (154)
                      ..+++.|++|+|||++.+.+.....
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~~~   49 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQFGR   49 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHSST
T ss_pred             CCEEEECCCCCCHHHHHHHHHHhCC
Confidence            4689999999999999999976543

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.34  E-value=0.0021  Score=50.26  Aligned_cols=22  Identities=45%  Similarity=0.572  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .++++|+.|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6889999999999999998864

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.34  E-value=0.0021  Score=49.21  Aligned_cols=21  Identities=38%  Similarity=0.570  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      -++++|+.|||||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999998864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.33  E-value=0.0024  Score=49.56  Aligned_cols=23  Identities=26%  Similarity=0.419  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|||||||++.+.+--
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68899999999999999998754

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.32  E-value=0.0022  Score=47.59  Aligned_cols=22  Identities=27%  Similarity=0.282  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      -.++++|++|+|||||++.+.+
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3688999999999999999875

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.32  E-value=0.0024  Score=48.34  Aligned_cols=23  Identities=43%  Similarity=0.505  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      +++++|++|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            78999999999999999998764

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.30  E-value=0.0031  Score=42.31  Aligned_cols=26  Identities=23%  Similarity=0.276  Sum_probs=22.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -..+.|.+.|..||||||+.+.|...
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHh
Confidence            34588999999999999999988643

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.29  E-value=0.0024  Score=43.25  Aligned_cols=21  Identities=29%  Similarity=0.525  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      -+++.|++|+|||++++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998864

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.29  E-value=0.002  Score=43.83  Aligned_cols=21  Identities=33%  Similarity=0.480  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      .+++.|+||+|||+++.++..
T Consensus        60 ~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999888764

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.28  E-value=0.0029  Score=40.61  Aligned_cols=19  Identities=47%  Similarity=0.704  Sum_probs=16.6

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 031704           16 LLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~   34 (154)
                      .+++|+.|+||||++..+.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4678999999999999864

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.27  E-value=0.0021  Score=50.51  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .++++|+.|+|||||++.+.+-
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            6899999999999999998864

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.25  E-value=0.0027  Score=42.50  Aligned_cols=22  Identities=32%  Similarity=0.638  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .+++.|++|+|||++++.+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999988753

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.24  E-value=0.0026  Score=44.95  Aligned_cols=21  Identities=33%  Similarity=0.457  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      -++++|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478899999999999998875

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.23  E-value=0.0018  Score=50.68  Aligned_cols=22  Identities=36%  Similarity=0.418  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .++++|+.|+|||||++.+.+-
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            6789999999999999988764

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.22  E-value=0.0026  Score=45.14  Aligned_cols=23  Identities=35%  Similarity=0.521  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -.+++.|++|+|||++++.+...
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            47899999999999999998763

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.22  E-value=0.0026  Score=49.35  Aligned_cols=23  Identities=35%  Similarity=0.593  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      -++++|+.|||||||++.+.+.-
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            57899999999999999998754

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.21  E-value=0.012  Score=43.42  Aligned_cols=50  Identities=18%  Similarity=0.140  Sum_probs=31.2

Q ss_pred             ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      ..++|.+++|.+. .+.......+.++.....    .++|.+||+||+||.++..
T Consensus       128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~  177 (358)
T 2rcn_A          128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEG  177 (358)
T ss_dssp             EECCCEEEEEEES-TTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHH
T ss_pred             HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchh
Confidence            5678999988665 454433332223322222    3677899999999987654

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.17  E-value=0.0031  Score=43.76  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..+++.|++|+|||++++.+..
T Consensus        40 ~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.17  E-value=0.0033  Score=44.33  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ..+++.|++|+|||++++.+...
T Consensus        52 ~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           52 KGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             SEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999999998754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.17  E-value=0.003  Score=49.78  Aligned_cols=23  Identities=39%  Similarity=0.567  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|+|||||++.+.+..
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            58899999999999999998754

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.13  E-value=0.0024  Score=50.07  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .++++|+.|||||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999988764

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.13  E-value=0.0031  Score=45.11  Aligned_cols=22  Identities=27%  Similarity=0.545  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .+++.|++|+|||++++.+...
T Consensus        51 ~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           51 GVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCcCHHHHHHHHHHH
Confidence            5899999999999999998864

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.13  E-value=0.0036  Score=44.60  Aligned_cols=24  Identities=25%  Similarity=0.517  Sum_probs=19.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ....+++.|++|+|||++++.+..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999986543

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.13  E-value=0.0033  Score=47.18  Aligned_cols=24  Identities=25%  Similarity=0.318  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ..-|+++|++||||||+.+.|...
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            356888999999999999998753

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.11  E-value=0.0038  Score=42.28  Aligned_cols=24  Identities=42%  Similarity=0.650  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      ..|+++|++|+|||+|...|...-
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            458999999999999999997643

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.09  E-value=0.0034  Score=45.84  Aligned_cols=23  Identities=22%  Similarity=0.398  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -.+++.|++|+|||+|++.+...
T Consensus        46 ~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           46 NNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999998763

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.08  E-value=0.0037  Score=42.87  Aligned_cols=21  Identities=33%  Similarity=0.502  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      -++++|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999877653

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.08  E-value=0.0034  Score=45.21  Aligned_cols=22  Identities=27%  Similarity=0.572  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .+++.|++|+|||++++.+...
T Consensus        39 ~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           39 PIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999988753

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.07  E-value=0.0038  Score=49.17  Aligned_cols=23  Identities=22%  Similarity=0.408  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|+|||||++.+.+.-
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            68899999999999999998754

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.07  E-value=0.0036  Score=44.70  Aligned_cols=23  Identities=26%  Similarity=0.182  Sum_probs=19.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .-+++.|+||+|||++++.+...
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35677799999999999998753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.05  E-value=0.0036  Score=48.62  Aligned_cols=24  Identities=21%  Similarity=0.436  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF   38 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~   38 (154)
                      .++++|+.|||||||++.+.+-..
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999987543

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.05  E-value=0.0058  Score=42.89  Aligned_cols=26  Identities=27%  Similarity=0.388  Sum_probs=22.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .....+++.|++|+|||+++..+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34568999999999999999998764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.03  E-value=0.0042  Score=48.19  Aligned_cols=23  Identities=22%  Similarity=0.482  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|+|||||++.+.+-.
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998754

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.02  E-value=0.0046  Score=41.32  Aligned_cols=21  Identities=24%  Similarity=0.295  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      .|.+.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998854

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.00  E-value=0.0054  Score=45.14  Aligned_cols=23  Identities=35%  Similarity=0.619  Sum_probs=19.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHh
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~   34 (154)
                      ...+|+++|++|+||||+...+.
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la   45 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELC   45 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHH
Confidence            34689999999999999998764

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.99  E-value=0.0057  Score=43.54  Aligned_cols=23  Identities=30%  Similarity=0.583  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -.+++.|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            47999999999999999988754

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.97  E-value=0.0043  Score=42.86  Aligned_cols=24  Identities=29%  Similarity=0.454  Sum_probs=19.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..+++.++|++||||||+..+|..
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHH
Confidence            347899999999999999998753

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.96  E-value=0.0047  Score=45.25  Aligned_cols=23  Identities=26%  Similarity=0.364  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .+++.|++|+|||++++.+...-
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999987643

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.96  E-value=0.0043  Score=42.73  Aligned_cols=24  Identities=21%  Similarity=0.266  Sum_probs=20.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ....|+++|++|+||||+.+.+..
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998864

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.96  E-value=0.0034  Score=45.63  Aligned_cols=21  Identities=38%  Similarity=0.616  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      ++++.|++|+||||+++.+.+
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998876

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.95  E-value=0.0053  Score=40.81  Aligned_cols=21  Identities=29%  Similarity=0.434  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (154)
                      ++|+|.++||||++..++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            689999999999999999854

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.95  E-value=0.0047  Score=48.63  Aligned_cols=23  Identities=22%  Similarity=0.482  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|+|||||++.+.+-.
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.94  E-value=0.0044  Score=44.44  Aligned_cols=21  Identities=33%  Similarity=0.596  Sum_probs=18.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHh
Q 031704           14 FKLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~   34 (154)
                      -.++++|+.|+||||++..+.
T Consensus       106 ~vi~lvG~~GsGKTTl~~~LA  126 (296)
T 2px0_A          106 KYIVLFGSTGAGKTTTLAKLA  126 (296)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            478899999999999999875

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.93  E-value=0.0046  Score=44.92  Aligned_cols=22  Identities=23%  Similarity=0.549  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..|+++|++|+||||+...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998864

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.92  E-value=0.0044  Score=45.45  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -+.++|++|+|||||+..+...
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999998864

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.91  E-value=0.0052  Score=44.89  Aligned_cols=22  Identities=36%  Similarity=0.693  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -|+|+|++|+|||+|...|...
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998653

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.87  E-value=0.0051  Score=43.68  Aligned_cols=22  Identities=32%  Similarity=0.631  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..+++.|++|+|||++++.+..
T Consensus        51 ~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999998865

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.87  E-value=0.0048  Score=44.81  Aligned_cols=22  Identities=27%  Similarity=0.684  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ++++.|++|+||||+++.+.+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988764

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.86  E-value=0.005  Score=45.01  Aligned_cols=22  Identities=23%  Similarity=0.594  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      .-|+|.|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999998864

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.86  E-value=0.0055  Score=44.35  Aligned_cols=22  Identities=18%  Similarity=0.403  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -|+|+|++|+|||+|...+...
T Consensus         5 ~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHh
Confidence            5789999999999999998753

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.84  E-value=0.0069  Score=41.66  Aligned_cols=25  Identities=20%  Similarity=0.137  Sum_probs=20.9

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      .+..-|++.|.+|+||||+++.+..
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999998753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.84  E-value=0.0051  Score=48.43  Aligned_cols=23  Identities=30%  Similarity=0.615  Sum_probs=20.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSDTF   38 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~~   38 (154)
                      ++++|+.|+|||||++.+.+-..
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCC
Confidence            68999999999999999987544

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.80  E-value=0.0053  Score=44.43  Aligned_cols=23  Identities=35%  Similarity=0.540  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -.+++.|++|+|||++++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            46999999999999999998864

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.79  E-value=0.0057  Score=44.06  Aligned_cols=23  Identities=26%  Similarity=0.483  Sum_probs=19.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      .--|+++|++|+||||++..+.+
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHH
Confidence            34688999999999999998753

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.79  E-value=0.0069  Score=41.78  Aligned_cols=23  Identities=35%  Similarity=0.452  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ..|++-|..||||||+++.|...
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            46899999999999999988643

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.78  E-value=0.0034  Score=53.64  Aligned_cols=21  Identities=43%  Similarity=0.654  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      +++++|++|||||||++.+++
T Consensus      1107 ~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A         1107 TLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp             EEEEECSTTSSTTSHHHHHTT
T ss_pred             EEEEECCCCChHHHHHHHHhc
Confidence            789999999999999999875

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.74  E-value=0.0059  Score=46.11  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      --|++.||||+|||++++++.+.
T Consensus       216 rGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          216 KGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeeEEECcCCCCHHHHHHHHHHH
Confidence            47999999999999999998763

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.73  E-value=0.0052  Score=44.91  Aligned_cols=23  Identities=26%  Similarity=0.310  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -.+++.|++|+|||++++.+...
T Consensus        45 ~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           45 SNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999998753

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.73  E-value=0.0059  Score=46.04  Aligned_cols=21  Identities=33%  Similarity=0.604  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      -+++.||||+|||++++++.+
T Consensus       208 GiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          208 GVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             EEEEESCTTTTHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=95.73  E-value=0.0081  Score=44.94  Aligned_cols=24  Identities=33%  Similarity=0.589  Sum_probs=21.5

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHH
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSF   33 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l   33 (154)
                      ..+.+|++++|...|||||++.++
T Consensus        37 ~~~~~klLLLG~geSGKSTi~KQm   60 (402)
T 1azs_C           37 YRATHRLLLLGAGESGKSTIVKQM   60 (402)
T ss_dssp             CTTEEEEEEEESTTSSHHHHHHHH
T ss_pred             hhccceEEEecCCCCchhhHHHHH
Confidence            356799999999999999999975

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.70  E-value=0.0066  Score=43.87  Aligned_cols=22  Identities=23%  Similarity=0.517  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      .-|+|+|++|+|||+|...+..
T Consensus        11 ~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCccCHHHHHHHHHH
Confidence            3578999999999999999864

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.69  E-value=0.0066  Score=43.72  Aligned_cols=22  Identities=45%  Similarity=0.638  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -++|.|++|+|||||++.+...
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCCHHHHHHHHHHH
Confidence            6889999999999999998754

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.68  E-value=0.007  Score=43.68  Aligned_cols=23  Identities=35%  Similarity=0.521  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ..+++.|++|+|||++++.+...
T Consensus        52 ~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           52 SGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            47999999999999999998753

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.68  E-value=0.0065  Score=43.98  Aligned_cols=22  Identities=32%  Similarity=0.732  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .+++.|++|+|||++++.+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988754

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.68  E-value=0.0062  Score=47.04  Aligned_cols=19  Identities=37%  Similarity=0.644  Sum_probs=0.0

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 031704           16 LLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~   34 (154)
                      ++++|++|||||||++.++
T Consensus        42 ~~l~G~nGsGKSTL~~~~l   60 (525)
T 1tf7_A           42 TLVSGTSGTGKTLFSIQFL   60 (525)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.66  E-value=0.0067  Score=45.88  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      --|++.||||+|||+|++++.+.
T Consensus       216 rGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          216 KGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999999998753

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.64  E-value=0.014  Score=40.76  Aligned_cols=24  Identities=25%  Similarity=0.414  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      ..+++.|++|+|||++++.+....
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhc
Confidence            468999999999999999987654

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.64  E-value=0.0076  Score=40.66  Aligned_cols=19  Identities=47%  Similarity=0.704  Sum_probs=16.2

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 031704           16 LLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~   34 (154)
                      .+++|+.|+||||++..+.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            4677999999999999863

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.61  E-value=0.0077  Score=43.97  Aligned_cols=23  Identities=22%  Similarity=0.544  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -.+++.|++|+|||++++.+...
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999988643

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.60  E-value=0.0078  Score=41.02  Aligned_cols=22  Identities=32%  Similarity=0.297  Sum_probs=19.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      .-|++.|++||||||+++.+..
T Consensus         7 ~~i~~eG~~gsGKsT~~~~l~~   28 (213)
T 4edh_A            7 LFVTLEGPEGAGKSTNRDYLAE   28 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5689999999999999998853

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=95.59  E-value=0.0072  Score=43.59  Aligned_cols=22  Identities=23%  Similarity=0.298  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -++|.|++|+|||+|++.+...
T Consensus        32 ~v~i~G~~G~GKT~L~~~~~~~   53 (357)
T 2fna_A           32 ITLVLGLRRTGKSSIIKIGINE   53 (357)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHh
Confidence            6889999999999999998753

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.57  E-value=0.0047  Score=48.11  Aligned_cols=24  Identities=38%  Similarity=0.542  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ...++++|++||||||+++.+.+.
T Consensus       369 G~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          369 GFTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCChHHHHHHHHHHh
Confidence            367999999999999999998753

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.56  E-value=0.0031  Score=44.06  Aligned_cols=21  Identities=33%  Similarity=0.597  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      .+++.|++|+|||++++.+..
T Consensus        46 ~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            388999999999999999865

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=95.55  E-value=0.0067  Score=44.97  Aligned_cols=25  Identities=16%  Similarity=0.094  Sum_probs=21.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ...+++++|++|+|||++++.++..
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~   58 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLR   58 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHH
Confidence            3468999999999999999998754

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.55  E-value=0.0088  Score=43.05  Aligned_cols=22  Identities=45%  Similarity=0.644  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..+++.|++|+|||+|+..+..
T Consensus       153 ~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          153 KGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.55  E-value=0.0073  Score=51.65  Aligned_cols=21  Identities=38%  Similarity=0.637  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      +++++|++|||||||++.+++
T Consensus       446 ~vaivG~sGsGKSTll~ll~~  466 (1321)
T 4f4c_A          446 TVALVGSSGCGKSTIISLLLR  466 (1321)
T ss_dssp             EEEEEECSSSCHHHHHHHHTT
T ss_pred             EEEEEecCCCcHHHHHHHhcc
Confidence            689999999999999998886

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.53  E-value=0.0078  Score=44.07  Aligned_cols=23  Identities=26%  Similarity=0.447  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -.+++.|++|+|||++++.+...
T Consensus        46 ~~vll~G~~G~GKT~la~~l~~~   68 (384)
T 2qby_B           46 FSNLFLGLTGTGKTFVSKYIFNE   68 (384)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999998753

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.52  E-value=0.0077  Score=45.87  Aligned_cols=23  Identities=30%  Similarity=0.576  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -+++++|++|+|||++++.+...
T Consensus       202 ~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          202 NNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999987643

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.52  E-value=0.0074  Score=46.87  Aligned_cols=22  Identities=41%  Similarity=0.508  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..++++|++|+|||||++.+.+
T Consensus       109 ~~vll~Gp~GtGKTtlar~ia~  130 (543)
T 3m6a_A          109 PILCLAGPPGVGKTSLAKSIAK  130 (543)
T ss_dssp             CEEEEESSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998864

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.52  E-value=0.008  Score=44.95  Aligned_cols=23  Identities=26%  Similarity=0.421  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      --+++.||||+|||.+++.+.+.
T Consensus       183 rGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          183 KGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CceEEeCCCCCCHHHHHHHHHHh
Confidence            35899999999999999999753

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.51  E-value=0.0062  Score=41.98  Aligned_cols=23  Identities=30%  Similarity=0.260  Sum_probs=16.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..-|++.|++||||||+++.+..
T Consensus        25 g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           25 GKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCEEEEECCC---CHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	154
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	7e-39
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	1e-37
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	5e-36
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	4e-35
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	5e-32
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	6e-30
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-29
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-29
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	3e-29
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	1e-28
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	5e-28
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	8e-24
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	3e-23
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	5e-23
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	4e-22
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	8e-22
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	3e-21
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	4e-21
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	5e-21
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	2e-20
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	3e-20
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	4e-20
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	4e-19
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	7e-19
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	1e-18
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	3e-18
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	7e-18
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	8e-18
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-17
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	2e-17
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	2e-17
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	2e-17
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-17
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	4e-17
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	7e-17
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	1e-16
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	2e-16
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	2e-16
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	4e-16
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-15
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	1e-14
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	3e-14
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	4e-14
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	6e-14
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	6e-13
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	1e-12
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	3e-12
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	4e-12
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-11
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	3e-11
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	1e-10
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-10
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	7e-10
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	7e-10
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	5e-09
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-08
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	1e-07
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	8e-05
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	1e-04
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	2e-04
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	6e-04
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	8e-04
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	0.003

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  128 bits (322), Expect = 7e-39
 Identities = 75/138 (54%), Positives = 91/138 (65%), Gaps = 3/138 (2%)

Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           E+DYLFKLLLIG+SGVGKS LLL F+ DT+  +   TIGVDFKIK V L GK +KL IWD
Sbjct: 2   EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 61

Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQERFRT+TSSYYRG+ GII+VYDVT +++F  +     +           +KLLVGN
Sbjct: 62  TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA--TSTVLKLLVGN 119

Query: 128 KVDKVCPWRLFLSGFWHF 145
           K D      +       F
Sbjct: 120 KCDLKDKRVVEYDVAKEF 137

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  124 bits (312), Expect = 1e-37
 Identities = 64/129 (49%), Positives = 87/129 (67%), Gaps = 3/129 (2%)

Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIW 66
           + +DYLFKLLLIGDSGVGK+ +L  F+ D F      TIG+DFKI+ + L GK++KL IW
Sbjct: 1   KTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIW 60

Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
           DTAGQERFRT+T++YYRGA GI++VYD+T   +F N+ +           + D  K+++G
Sbjct: 61  DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWI--RNIEEHASADVEKMILG 118

Query: 127 NKVDKVCPW 135
           NK D     
Sbjct: 119 NKCDVNDKR 127

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 5e-36
 Identities = 59/138 (42%), Positives = 83/138 (60%), Gaps = 3/138 (2%)

Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           ++D+LFK++LIG++GVGK+ L+  FT   F      TIGVDF IK V + G+K+KL IWD
Sbjct: 1   DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 60

Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
           TAGQERFR++T SYYR A  +I+ YD+T  ++F  L +           +   I +LVGN
Sbjct: 61  TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWL--REIEQYASNKVITVLVGN 118

Query: 128 KVDKVCPWRLFLSGFWHF 145
           K+D      +       F
Sbjct: 119 KIDLAERREVSQQRAEEF 136

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  117 bits (295), Expect = 4e-35
 Identities = 69/133 (51%), Positives = 84/133 (63%), Gaps = 3/133 (2%)

Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           + K+LLIGDSGVGKS LL+ F  D F      TIG+DFKIK V + GKK+KL IWDTAGQ
Sbjct: 2   IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61

Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           ERFRT+T++YYRGA GII+VYD+T   TFTN+   +  +      N +   LLVGNK D 
Sbjct: 62  ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWF--KTVNEHANDEAQLLLVGNKSDM 119

Query: 132 VCPWRLFLSGFWH 144
                    G   
Sbjct: 120 ETRVVTADQGEAL 132

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  110 bits (275), Expect = 5e-32
 Identities = 55/137 (40%), Positives = 82/137 (59%), Gaps = 3/137 (2%)

Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
           FDY+FK+L+IG+S VGK++ L  +  D+F      T+G+DFK+K +    K++KL IWDT
Sbjct: 2   FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61

Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQER+RT+T++YYRGA G I++YD+T  ++F  + D          +  +   LLVGNK
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWS--TQIKTYSWDNAQVLLVGNK 119

Query: 129 VDKVCPWRLFLSGFWHF 145
            D      +        
Sbjct: 120 CDMEDERVVSSERGRQL 136

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 6e-30
 Identities = 60/127 (47%), Positives = 85/127 (66%), Gaps = 3/127 (2%)

Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
           +DYLFK++LIGDSGVGKS LL  FT + F  E   TIGV+F  + + + GK +K  IWDT
Sbjct: 1   YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60

Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQER+R +TS+YYRGA G ++VYD+ +  T+ N+     KE+  ++ + + + +LVGNK
Sbjct: 61  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWL-KELRDHA-DSNIVIMLVGNK 118

Query: 129 VDKVCPW 135
            D     
Sbjct: 119 SDLRHLR 125

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 1e-29
 Identities = 56/145 (38%), Positives = 81/145 (55%), Gaps = 4/145 (2%)

Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
           +D+LFK L+IG++G GKS LL  F    F ++ + TIGV+F  K + +GGK +KL IWDT
Sbjct: 2   YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDT 61

Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQERFR++T SYYRGA G ++VYD+T R+T+  L +       L S     I +++   
Sbjct: 62  AGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS---QNIVIILCGN 118

Query: 129 VDKVCPWRLFLSGFWHFLLSKFYCS 153
              +   R            +    
Sbjct: 119 KKDLDADREVTFLEASRFAQENELM 143

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 2e-29
 Identities = 60/127 (47%), Positives = 82/127 (64%), Gaps = 3/127 (2%)

Query: 10  FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
           + Y+FK ++IGD GVGKS LL  FT   F  +   TIGV+F  + + + G+K+KL IWDT
Sbjct: 1   YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60

Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
           AGQERFR +T SYYRGA G +MVYD+TRR T+ +L+       +   TN + + +L+GNK
Sbjct: 61  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN--LTNPNTVIILIGNK 118

Query: 129 VDKVCPW 135
            D     
Sbjct: 119 ADLEAQR 125

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (256), Expect = 3e-29
 Identities = 52/129 (40%), Positives = 79/129 (61%), Gaps = 4/129 (3%)

Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIW 66
            +D  FK++L+GDSGVGK+ LL+ F    F       T+G+DF+ K + + G K+KL +W
Sbjct: 2   FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 61

Query: 67  DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
           DTAGQERFR++T +YYR A  ++++YDVT + +F N+     +  +      D   +L+G
Sbjct: 62  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA--QHDVALMLLG 119

Query: 127 NKVDKVCPW 135
           NKVD     
Sbjct: 120 NKVDSAHER 128

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 1e-28
 Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 11/146 (7%)

Query: 9   EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK-------- 59
           ++DYL KLL +GDSGVGK+T L  +T + F  +   T+G+DF+ K V    +        
Sbjct: 1   DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 60

Query: 60  --KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTN 117
             K+ L +WDTAGQERFR+LT++++R A G ++++D+T + +F N+ +  ++        
Sbjct: 61  AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCE 120

Query: 118 QDCIKLLVGNKVDKVCPWRLFLSGFW 143
              I L+                   
Sbjct: 121 NPDIVLIGNKADLPDQREVNERQARE 146

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =   99 bits (248), Expect = 5e-28
 Identities = 71/118 (60%), Positives = 86/118 (72%), Gaps = 3/118 (2%)

Query: 9   EFDYL--FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAI 65
           + D L   K+L+IG+SGVGKS+LLL FT DTF  EL+ TIGVDFK+K +++ G K KLAI
Sbjct: 1   DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 60

Query: 66  WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL 123
           WDTAGQERFRTLT SYYRGAQG+I+VYDVTRRDTF  L +   +     + N     L
Sbjct: 61  WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNML 118

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.2 bits (220), Expect = 8e-24
 Identities = 62/135 (45%), Positives = 87/135 (64%), Gaps = 3/135 (2%)

Query: 12  YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70
           YLFK ++IGD+GVGKS LLL FT   F      TIGV+F  + V + GK++KL IWDTAG
Sbjct: 2   YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 61

Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           QE FR++T SYYRGA G ++VYD+TRR+TF +L     ++   +S++ + + +L+GNK D
Sbjct: 62  QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWL-EDARQHSSS-NMVIMLIGNKSD 119

Query: 131 KVCPWRLFLSGFWHF 145
                 +       F
Sbjct: 120 LESRRDVKREEGEAF 134

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (215), Expect = 3e-23
 Identities = 46/133 (34%), Positives = 70/133 (52%), Gaps = 3/133 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+ +G+  VGK++L+  F  D+F      TIG+DF  K + L  + ++L +WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132
           RFR+L  SY R +   ++VYD+T  ++F                  D I +LVGNK D  
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRT--ERGSDVIIMLVGNKTDLA 118

Query: 133 CPWRLFLSGFWHF 145
              ++ +      
Sbjct: 119 DKRQVSIEEGERK 131

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.9 bits (214), Expect = 5e-23
 Identities = 47/135 (34%), Positives = 76/135 (56%), Gaps = 3/135 (2%)

Query: 12  YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70
           Y FK++L+G+  VGK++L+L +  + F ++   T+G  F  K + +GGK++ LAIWDTAG
Sbjct: 2   YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 61

Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           QERF  L   YYR + G I+VYD+T  D+F  + +   +         +    +VGNK+D
Sbjct: 62  QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELR--KMLGNEICLCIVGNKID 119

Query: 131 KVCPWRLFLSGFWHF 145
                 + +     +
Sbjct: 120 LEKERHVSIQEAESY 134

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.4 bits (210), Expect = 4e-22
 Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 4/118 (3%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K +++GD  VGK+ LL+S+T++ F  E  PT+  D     V +GG+   L ++DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +  L    Y      ++ + V    +F N+ + W  EI           LLVG ++D
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI--THHCPKTPFLLVGTQID 118

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 83.8 bits (206), Expect = 8e-22
 Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 1/133 (0%)

Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           L K++++G  GVGKS L L F  D F E       D   K V L G+++++ I DTAGQE
Sbjct: 4   LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 63

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132
            +  +  +Y+R  +G + V+ +T  ++F   AD + ++I     +++   LLVGNK D  
Sbjct: 64  DYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLE 122

Query: 133 CPWRLFLSGFWHF 145
              ++ +    + 
Sbjct: 123 DKRQVSVEEAKNR 135

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.8 bits (203), Expect = 3e-21
 Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 5/148 (3%)

Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70
               KL+++G  GVGKS L + F    F         D   K  ++ G   +L I DTAG
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 63

Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           QE F  +   Y R   G ++V+ +  R +F  +  ++ + +       D   +LVGNK D
Sbjct: 64  QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILR-VKDRDDFPVVLVGNKAD 122

Query: 131 KVCPWRLFLSGFWHFLLSK----FYCSS 154
                ++  S    F  S     F  S+
Sbjct: 123 LESQRQVPRSEASAFGASHHVAYFEASA 150

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.9 bits (201), Expect = 4e-21
 Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 1/122 (0%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           +K++++G  GVGKS L + F + TF E       DF  K + +      L I DTAG E+
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133
           F ++   Y +  QG I+VY +  + +F +       +I      +    +LVGNKVD   
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQD-IKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 134 PW 135
             
Sbjct: 123 ER 124

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.0 bits (201), Expect = 5e-21
 Identities = 49/140 (35%), Positives = 68/140 (48%), Gaps = 4/140 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+G+S VGKS+L+L F    F E    TIG  F  + V L    +K  IWDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132
           R+ +L   YYRGAQ  I+VYD+T  ++F    +    +      + + +  L GNK   +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWV--KELQRQASPNIVIALSGNK-ADL 123

Query: 133 CPWRLFLSGFWHFLLSKFYC 152
              R                
Sbjct: 124 ANKRAVDFQEAQSYADDNSL 143

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.8 bits (198), Expect = 2e-20
 Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 6/136 (4%)

Query: 1   MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
           MA          + K +++GD  VGK+ LL+S+ +D F E       D     V +GGK+
Sbjct: 1   MAHGPGA----LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQ 56

Query: 61  MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
             L ++DTAGQE +  L    Y      ++ + V    +F N+ + W  E+  Y+ N   
Sbjct: 57  YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN--V 114

Query: 121 IKLLVGNKVDKVCPWR 136
             LL+G ++D     +
Sbjct: 115 PFLLIGTQIDLRDDPK 130

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (196), Expect = 3e-20
 Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 1/122 (0%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           +KL+++G  GVGKS L +    + F +       D   K V + G+   L I DTAGQE 
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133
           +  +   Y R  +G + V+ +    +F      + ++I     + D   +LVGNK D   
Sbjct: 64  YSAMRDQYMRTGEGFLCVFAINNTKSF-EDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122

Query: 134 PW 135
             
Sbjct: 123 RT 124

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.1 bits (196), Expect = 4e-20
 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 2/117 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            K +++GD  VGK+ LL+S+T++ F         D    +V + GK + L +WDTAGQE 
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L    Y      ++ + +    +F N+   W  E+  +  N     +LVG K+D
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN--TPIILVGTKLD 120

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (188), Expect = 4e-19
 Identities = 43/127 (33%), Positives = 69/127 (54%), Gaps = 1/127 (0%)

Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
             LFK++L+GD GVGKS+L+  + ++ F  +L  TIGV+F  K + + G  + + IWDTA
Sbjct: 4   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63

Query: 70  GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
           GQERFR+L + +YRG+   ++ + V    +F NL++   + I      +      V    
Sbjct: 64  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 123

Query: 130 DKVCPWR 136
                 R
Sbjct: 124 KIDISER 130

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.2 bits (186), Expect = 7e-19
 Identities = 48/125 (38%), Positives = 72/125 (57%), Gaps = 3/125 (2%)

Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           +FK+++IGDS VGK+ L   F +  F +    TIGVDF+ + V + G+++K+ +WDTAGQ
Sbjct: 2   IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61

Query: 72  ERFRTL-TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           ERFR      YYR    ++ VYD+T   +F +L     +E   +    D  ++LVGNK D
Sbjct: 62  ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWI-EECKQHLLANDIPRILVGNKCD 120

Query: 131 KVCPW 135
                
Sbjct: 121 LRSAI 125

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.9 bits (185), Expect = 1e-18
 Identities = 45/129 (34%), Positives = 75/129 (58%), Gaps = 3/129 (2%)

Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           L K++++GDSGVGK++L+  + +  F  +   TIG DF  K V +  + + + IWDTAGQ
Sbjct: 2   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61

Query: 72  ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYST--NQDCIKLLVGNKV 129
           ERF++L  ++YRGA   ++V+DVT  +TF  L     + +   S    ++   +++GNK+
Sbjct: 62  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 121

Query: 130 DKVCPWRLF 138
           D        
Sbjct: 122 DLENRQVAT 130

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (182), Expect = 3e-18
 Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 1/132 (0%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           +KL+++G  GVGKS L + F    F E       D   K V +  ++  L I DTAG E+
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ 63

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133
           F  +   Y +  QG  +VY +T + TF N      ++I      +D   +LVGNK D   
Sbjct: 64  FTAMRDLYMKNGQGFALVYSITAQSTF-NDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 134 PWRLFLSGFWHF 145
              +      + 
Sbjct: 123 ERVVGKEQGQNL 134

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.7 bits (182), Expect = 7e-18
 Identities = 18/120 (15%), Positives = 36/120 (30%), Gaps = 2/120 (1%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
            +L +G    GK+ L +   +  + +   +I     I  V          I     +   
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLR 61

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI--DLYSTNQDCIKLLVGNKVDKV 132
             L   +   A+ ++ V D             +  ++  D  +       L+  NK D  
Sbjct: 62  FQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 121

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.6 bits (179), Expect = 8e-18
 Identities = 45/137 (32%), Positives = 79/137 (57%), Gaps = 4/137 (2%)

Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK-MKLAIWDTAG 70
           + K++++GDSGVGK++L+  + +D + ++   TIG DF  K V + G K   + +WDTAG
Sbjct: 2   ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61

Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTN--QDCIKLLVGNK 128
           QERF++L  ++YRGA   ++VYDVT   +F N+     + +   + N  +    +++GNK
Sbjct: 62  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 121

Query: 129 VDKVCPWRLFLSGFWHF 145
           +D     ++        
Sbjct: 122 IDAEESKKIVSEKSAQE 138

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 72.7 bits (177), Expect = 2e-17
 Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 5/125 (4%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G    GK+T+L            PT+G + +        K +K  +WD  GQ++
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDK 68

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133
            R L   YY G QG+I V D   RD     A      I      +D I L+  NK D   
Sbjct: 69  IRPLWRHYYTGTQGLIFVVDCADRDRIDE-ARQELHRIINDREMRDAIILIFANKQDLPD 127

Query: 134 PWRLF 138
             +  
Sbjct: 128 AMKPH 132

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.8 bits (177), Expect = 2e-17
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 1/132 (0%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           +KL+++GD GVGKS L + F    F         D  +KH  +  +   L + DTAGQE 
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEE 64

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133
           F  +   Y R   G ++VY VT + +F ++       + +       + +LV NKVD + 
Sbjct: 65  FSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM-ILVANKVDLMH 123

Query: 134 PWRLFLSGFWHF 145
             ++        
Sbjct: 124 LRKVTRDQGKEM 135

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.7 bits (177), Expect = 2e-17
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 2/117 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            KL+++GD   GK+ LL+  + D F E+      +  +  + + GK+++LA+WDTAG E 
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           +  L    Y     I+M + +   D+  N+ + W  E+  +  N   I   VGNK D
Sbjct: 63  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIIL--VGNKKD 117

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.6 bits (180), Expect = 2e-17
 Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 11/133 (8%)

Query: 8   QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWD 67
           Q +    +LLL+G    GKST++             T G+            K+   ++D
Sbjct: 1   QVYRATHRLLLLGAGESGKSTIVKQMRILHV---VLTSGIFETK----FQVDKVNFHMFD 53

Query: 68  TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
             GQ   R      +     II V   +  +           + +      +  K +  N
Sbjct: 54  VGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIR----EDNQTNRLQEALNLFKSIWNN 109

Query: 128 KVDKVCPWRLFLS 140
           +  +     LFL+
Sbjct: 110 RWLRTISVILFLN 122

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 71.6 bits (174), Expect = 3e-17
 Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 4/117 (3%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           ++L++G    GK+T+L             T           +  K +   +WD  GQ++ 
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI----VTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 57

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
           R L   Y++  QG+I V D   R+      +   + +         + +    +   
Sbjct: 58  RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.0 bits (175), Expect = 4e-17
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 1/122 (0%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           ++L+++G  GVGKS L + F    F         D   K   +  +  +L I DTAGQE 
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEE 65

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133
           F  +   Y R  +G ++V+ VT R +F  +   + ++I       +   +L+GNK D   
Sbjct: 66  FGAMREQYMRTGEGFLLVFSVTDRGSFEEIYK-FQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 134 PW 135
             
Sbjct: 125 QR 126

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.2 bits (173), Expect = 7e-17
 Identities = 50/122 (40%), Positives = 71/122 (58%), Gaps = 3/122 (2%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           KL+L+G++ VGKS+++L F S+ F E   PTIG  F  + V +    +K  IWDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133
           F +L   YYR AQ  ++VYDVT+  +F        +       ++D I  LVGNK+D + 
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELH--EQASKDIIIALVGNKIDMLQ 122

Query: 134 PW 135
             
Sbjct: 123 EG 124

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 70.8 bits (172), Expect = 1e-16
 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 5/118 (4%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G  G GK+T+L            PTIG + +        K +KL +WD  GQ  
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSY----KNLKLNVWDLGGQTS 73

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
            R     YY     +I V D T +D  +  +      +      QD   L+  NK D+
Sbjct: 74  IRPYWRCYYADTAAVIFVVDSTDKDRMSTASK-ELHLMLQEEELQDAALLVFANKQDQ 130

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.5 bits (171), Expect = 2e-16
 Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 2/116 (1%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           K++++GDS  GK+ LL  F  D F E       +       +  ++++L++WDT+G   +
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 63

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
             +    Y  +  +++ +D++R +T  ++   W  EI  +    +   LLVG K D
Sbjct: 64  DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSD 117

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.0 bits (170), Expect = 2e-16
 Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 4/140 (2%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            K+ L+GD+GVGKS+++  F  D+F   ++PTIG  F  K V    +  K  IWDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132
           RFR L   YYRG+   I+VYD+T+ +TF+ L +      +L       I + +      +
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWV---RELRQHGPPSIVVAIAGNKCDL 121

Query: 133 CPWRLFLSGFWHFLLSKFYC 152
              R  +           + 
Sbjct: 122 TDVREVMERDAKDYADSIHA 141

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (168), Expect = 4e-16
 Identities = 33/132 (25%), Positives = 55/132 (41%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           +++ + G  GVGKS+L+L F   TF E       D   + ++       L I DT G  +
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ 62

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133
           F  +           I+VY +T R +   L  I+ +  ++    +    +LVGNK D+  
Sbjct: 63  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 122

Query: 134 PWRLFLSGFWHF 145
              +  S     
Sbjct: 123 SREVQSSEAEAL 134

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 66.6 bits (161), Expect = 4e-15
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 5/117 (4%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            +LL++G    GK+T+L  F  +  + +SPT+G + K        +  KL IWD  GQ+ 
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEH----RGFKLNIWDVGGQKS 58

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            R+   +Y+    G+I V D   R    +      + + +         L+  NK D
Sbjct: 59  LRSYWRNYFESTDGLIWVVDSADRQRMQDCQREL-QSLLVEERLAGATLLIFANKQD 114

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.7 bits (159), Expect = 1e-14
 Identities = 25/129 (19%), Positives = 42/129 (32%), Gaps = 14/129 (10%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            KLLL+G    GKST +          + PT G+           + +   + D  GQ  
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGSGV-PTTGIIEYPFD----LQSVIFRMVDVGGQRS 57

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNL---------ADIWAKEIDLYSTNQDCIKLL 124
            R      +     I+ +  ++  D              +    + I  Y   Q+   +L
Sbjct: 58  ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVIL 117

Query: 125 VGNKVDKVC 133
             NK D + 
Sbjct: 118 FLNKKDLLE 126

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.3 bits (155), Expect = 3e-14
 Identities = 33/94 (35%), Positives = 60/94 (63%), Gaps = 1/94 (1%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           K++++G+  VGKS+++  +    F ++   TIGVDF  + + +  + ++L +WDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIW 107
           F  +T +YYRGAQ  ++V+  T R++F  ++   
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWR 97

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.6 bits (153), Expect = 4e-14
 Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 5/121 (4%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
           KLL +G    GK+TLL    +D    L PT           L    +K   +D  G  + 
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWH----PTSEELAIGNIKFTTFDLGGHIQA 57

Query: 75  RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134
           R L   Y+    GI+ + D    + F          +   +  +D   +++GNK+D    
Sbjct: 58  RRLWKDYFPEVNGIVFLVDAADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 135 W 135
            
Sbjct: 117 V 117

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.8 bits (154), Expect = 6e-14
 Identities = 24/125 (19%), Positives = 37/125 (29%), Gaps = 15/125 (12%)

Query: 13  LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           L K+LL+G    GKST L            PT G+           K +   + D  GQ 
Sbjct: 2   LVKILLLGAGESGKSTFLKQMRII--HGQDPTKGIHEYD----FEIKNVPFKMVDVGGQR 55

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNL---------ADIWAKEIDLYSTNQDCIKL 123
             R      +     I+ +   +  D              +    + I       +   +
Sbjct: 56  SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 115

Query: 124 LVGNK 128
           L  NK
Sbjct: 116 LFLNK 120

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 60.7 bits (146), Expect = 6e-13
 Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 5/122 (4%)

Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70
           D   ++LL+G    GK+TLL    S+    ++PT G + K        +  KL +WD  G
Sbjct: 14  DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQS----QGFKLNVWDIGG 69

Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           Q + R    SY+     +I V D   R  F         E+           L+  NK D
Sbjct: 70  QRKIRPYWRSYFENTDILIYVIDSADRKRFEE-TGQELTELLEEEKLSCVPVLIFANKQD 128

Query: 131 KV 132
            +
Sbjct: 129 LL 130

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 1e-12
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 2/122 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            KL + G +GVGKS L++ F +  F                 +  + + + I DTAGQE 
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 62

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133
                  + R  +G ++VYD+T R +F  +  +    +D     ++   +LVGNK D   
Sbjct: 63  TIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLK-NILDEIKKPKNVTLILVGNKADLDH 120

Query: 134 PW 135
             
Sbjct: 121 SR 122

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (141), Expect = 3e-12
 Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
           FKL+L+GD G GK+T +    +  F ++   T+GV+            +K  +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132
           +F  L   YY  AQ  I+++DVT R T+ N+ +      DL    ++   +L GNKVD  
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWH---RDLVRVCENIPIVLCGNKVDIK 120

Query: 133 CPW 135
              
Sbjct: 121 DRK 123

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 4e-12
 Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 1/132 (0%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            K+ ++G   VGKS+L + F    F +       +   K + + G++  L + DTAGQ+ 
Sbjct: 5   RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 64

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133
           +     +Y     G I+VY VT   +F  +  I  K +D          +LVGNK D   
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLD-MVGKVQIPIMLVGNKKDLHM 123

Query: 134 PWRLFLSGFWHF 145
              +        
Sbjct: 124 ERVISYEEGKAL 135

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 2e-11
 Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 5/118 (4%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            K++++G    GK+T+L  F+ +     SPTIG + +   +       +  +WD  GQE 
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVI----NNTRFLMWDIGGQES 71

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
            R+  ++YY   + +I+V D T R+  +   +   K +      +  + L+  NK D 
Sbjct: 72  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL-LIFANKQDV 128

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.5 bits (135), Expect = 3e-11
 Identities = 25/126 (19%), Positives = 39/126 (30%), Gaps = 12/126 (9%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            KLLL+G    GKST++               G    I       K +   ++D  GQ  
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHE----AGTG----IVETHFTFKDLHFKMFDVGGQRS 54

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133
            R      + G   II    ++  D      +   +  +    +      +  NK     
Sbjct: 55  ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE----SMKLFDSICNNKWFTDT 110

Query: 134 PWRLFL 139
              LFL
Sbjct: 111 SIILFL 116

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 1e-10
 Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 2/128 (1%)

Query: 11  DYLFKLLLIGDSGVGKSTLLLSFTS--DTFEELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
           +  ++++LIG+ GVGKSTL   F    D+ +     +G D   + + + G+   + + D 
Sbjct: 1   NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDM 60

Query: 69  AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
              +        +        ++            A     ++      +D   +LVGNK
Sbjct: 61  WENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 120

Query: 129 VDKVCPWR 136
            D V    
Sbjct: 121 SDLVRCRE 128

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 4e-10
 Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 5/121 (4%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            ++L++G  G GK+T+L            PTIG + +        K +K  +WD  G   
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVT----YKNLKFQVWDLGGLTS 61

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133
            R     YY     +I V D   RD            ++     +  +  +  NK D   
Sbjct: 62  IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILV-VFANKQDMEQ 120

Query: 134 P 134
            
Sbjct: 121 A 121

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 7e-10
 Identities = 24/137 (17%), Positives = 53/137 (38%), Gaps = 7/137 (5%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            +L ++GD+  GKS+L+  F + +++ L  T    +  K + + G+   + I + AG   
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD 64

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDL-YSTNQDCIKLLVGNKVDKV 132
            +     +   A  +I V+ +   ++F  ++ +  +   L           LVG +    
Sbjct: 65  AK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 119

Query: 133 CPWRLFLSGFWHFLLSK 149
                 +       L  
Sbjct: 120 ASSPRVVGDARARALCA 136

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 7e-10
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 2/115 (1%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
           +K+LL+G  GVGKS L   F        +   G     + + + G++  L ++D   Q+ 
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAG-HTYDRSIVVDGEEASLMVYDIWEQDG 60

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
            R L           ++VY VT + +F   +++  +         D   +LVGNK
Sbjct: 61  GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRR-ARQTDDVPIILVGNK 114

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 50.5 bits (119), Expect = 5e-09
 Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 5/122 (4%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
            KL+ +G    GK+TLL     D   +  PT+    +   +      M    +D  G  +
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTI----AGMTFTTFDLGGHIQ 69

Query: 74  FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133
            R +  +Y     GI+ + D    +      +     +    T  +   L++GNK+D+  
Sbjct: 70  ARRVWKNYLPAINGIVFLVDCADHERLLESKE-ELDSLMTDETIANVPILILGNKIDRPE 128

Query: 134 PW 135
             
Sbjct: 129 AI 130

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 2e-08
 Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 6/118 (5%)

Query: 14  FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
            +L L+G    GK+T +    S  F E++ PT+G + +          + + +WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITK----GNVTIKLWDIGGQP 58

Query: 73  RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
           RFR++   Y RG   I+ + D   ++     +      +      Q    L++GNK D
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEA-SKNELHNLLDKPQLQGIPVLVLGNKRD 115

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.9 bits (110), Expect = 1e-07
 Identities = 26/128 (20%), Positives = 41/128 (32%), Gaps = 12/128 (9%)

Query: 12  YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
           Y   +++ G    GK++LL   T+D+     PT+     +      G  +   + D  G 
Sbjct: 2   YQPSIIIAGPQNSGKTSLLTLLTTDSV---RPTVVSQEPLSAADYDGSGVT--LVDFPGH 56

Query: 72  ERFRTLTSSYY-----RGAQGIIMVYDVTRRDTFTNLADIWAK--EIDLYSTNQDCIKLL 124
            + R   S Y           I MV         T  A+       I   S       L+
Sbjct: 57  VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI 116

Query: 125 VGNKVDKV 132
             NK +  
Sbjct: 117 ACNKSELF 124

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.4 bits (91), Expect = 8e-05
 Identities = 22/124 (17%), Positives = 36/124 (29%), Gaps = 10/124 (8%)

Query: 14  FKLLLIGDSGVGKSTLLLSFT-SDTFEELSPTIGVDFKIKHVALG--GKKMKLAIWDTAG 70
             + + G++G GKS+ + +       EE +   GV                 +  WD  G
Sbjct: 57  LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPG 116

Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK--LLVGNK 128
                    +Y    +     YD     +          +ID+        K    V  K
Sbjct: 117 IGSTNFPPDTYL--EKMKFYEYDFFIIIS---ATRFKKNDIDIAKAISMMKKEFYFVRTK 171

Query: 129 VDKV 132
           VD  
Sbjct: 172 VDSD 175

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 38.2 bits (87), Expect = 1e-04
 Identities = 14/56 (25%), Positives = 23/56 (41%)

Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
           K+++ G    GKS+LL +        ++   G    +    +    M L I DTA
Sbjct: 2  MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTA 57

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.7 bits (86), Expect = 2e-04
 Identities = 21/93 (22%), Positives = 33/93 (35%)

Query: 6  SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAI 65
          S+ E     K+ ++G   VGKSTL  +  +     +SP  G         +     K   
Sbjct: 1  SKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVF 60

Query: 66 WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD 98
           DTAG  R   +            +V  + + D
Sbjct: 61 VDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKAD 93

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 36.2 bits (82), Expect = 6e-04
 Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 8/127 (6%)

Query: 18  LIGDSGVGKSTLLLSFT-------SDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70
           L+G    GKS+LL + T          F  LSP +GV    +        +   I   + 
Sbjct: 6   LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE 65

Query: 71  QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
            +        +    + ++ V D       T    +  +             L+  NKVD
Sbjct: 66  GKGLGLEFLRHIARTRVLLYVLDAADEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVD 124

Query: 131 KVCPWRL 137
            +    +
Sbjct: 125 LLEEEAV 131

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.7 bits (81), Expect = 8e-04
 Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 9/102 (8%)

Query: 15  KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG---- 70
           +++++G   VGKSTLL    ++    ++   G    +    +  + +   I DTAG    
Sbjct: 2   RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61

Query: 71  -----QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIW 107
                +      T      A  ++ V D +      +   + 
Sbjct: 62  TNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILE 103

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 33.8 bits (76), Expect = 0.003
 Identities = 8/16 (50%), Positives = 14/16 (87%)

Query: 15 KLLLIGDSGVGKSTLL 30
          K+++ G+ GVGK+TL+
Sbjct: 2  KIIITGEPGVGKTTLV 17

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	154
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.97
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.97
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.97
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.96
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.96
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.96
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.95
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.95
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.95
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.95
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.95
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.95
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.94
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.94
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.94
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.93
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.93
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.92
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.92
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.88
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.88
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.86
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.85
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.84
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.84
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.84
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.83
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.83
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.83
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.82
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.81
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.8
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.8
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.78
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.77
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.77
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.77
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.76
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.75
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.74
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.74
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.72
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.72
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.7
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.68
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.68
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.68
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.65
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.63
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.6
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.58
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.58
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.54
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.53
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.47
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.46
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.3
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.24
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.21
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.18
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.15
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.94
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.79
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.46
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.42
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.39
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.23
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.17
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.03
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.87
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.83
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.78
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.73
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.71
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.7
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.68
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.66
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.65
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.65
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.64
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.61
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.6
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.6
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.54
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.54
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.51
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.51
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.5
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.49
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.46
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.42
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.41
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.39
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.38
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.36
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.36
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.36
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.35
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.33
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.32
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.31
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.3
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.3
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.29
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.28
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.27
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.27
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.26
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.25
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.24
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.21
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.21
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.19
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.19
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.18
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.16
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.16
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.15
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.15
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.13
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.11
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.1
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.09
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.07
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.06
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.06
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.03
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.02
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.99
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.98
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.96
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.95
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.95
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.93
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.91
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.91
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.9
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.87
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.82
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.79
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.79
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.79
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.77
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.72
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.72
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.71
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.71
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.69
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.63
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.51
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.48
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.47
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.43
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.42
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.42
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.36
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.35
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.34
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.34
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.29
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.26
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.25
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.25
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.25
d1okkd2	207	GTPase domain of the signal recognition particle r	96.24
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.22
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.1
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.06
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.06
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.05
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.03
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.96
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.88
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.82
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.81
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.78
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.78
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.76
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.71
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.64
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.61
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.55
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.54
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.53
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.52
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.5
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.44
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.4
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.38
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.37
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.36
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.32
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.31
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.3
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.24
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.23
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.14
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.09
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.09
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.07
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.98
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.98
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.97
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.9
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.9
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.87
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.82
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.81
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.59
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.38
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.3
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.27
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.13
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.74
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.41
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.38
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.79
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.31
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.02
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	91.68
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	91.07
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	91.03
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	90.23
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	90.01
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	89.83
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	89.3
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	89.02
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	88.79
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	88.68
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	88.42
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	88.4
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	87.9
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	87.31
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	86.89
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.35
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	86.35
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	86.34
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	86.25
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.79
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	85.68
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	85.21
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	85.07
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.63
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	84.42
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	84.35
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	83.66
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	83.19
d1ls1a2	207	GTPase domain of the signal sequence recognition p	80.34

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-30  Score=171.39  Aligned_cols=129  Identities=24%  Similarity=0.329  Sum_probs=97.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      .+||+++|++|+|||||++++.+..+....++.+.. ....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHT-YDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC---------CEE-EEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeee-ecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            489999999999999999999998875555555444 4456778999999999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhh
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFW  143 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~  143 (154)
                      |++++.+++.+.. |...+.........|+++||||+|+.+.+++...+..
T Consensus        80 d~t~~~s~~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~  129 (168)
T d2gjsa1          80 SVTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGR  129 (168)
T ss_dssp             ETTCHHHHHHHHH-HHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred             ccccccccccccc-ccchhhcccccccceEEEeecccchhhhcchhHHHHH
Confidence            9999999999988 8888777656677899999999999887776554443

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-29  Score=167.39  Aligned_cols=132  Identities=27%  Similarity=0.369  Sum_probs=114.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      .+.+||+++|++|+|||||+++|.++.+ ..+.|+.+.++ ...+.+++..+.+.+||++|.+.+..+...+++.+|+++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            3568999999999999999999999988 55667777664 466788999999999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhh
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWH  144 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~  144 (154)
                      +|||++++++++.+.. |...+.......+.|+++||||+|+..++.+..++...
T Consensus        81 lv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~  134 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKA  134 (167)
T ss_dssp             EEEETTCHHHHHHHHH-HHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             hhcccchhhhhhhhhh-hhhhhhhcccccccceeeeccccccccccchhHHHHHH
Confidence            9999999999999988 88777666567789999999999998777776655443

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.4e-30  Score=170.90  Aligned_cols=134  Identities=28%  Similarity=0.389  Sum_probs=113.3

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      +....+||+++|.+|||||||++++..+.+......+..+.....+.+++..+.+.+||++|.+++...+..+++.+|++
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~   81 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   81 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence            44567999999999999999999999999854444444566667788899999999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhh
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFW  143 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~  143 (154)
                      ++|||++++.+++.+.. |...+.......+.|++|||||+|+.+.+++..++..
T Consensus        82 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~  135 (173)
T d2fn4a1          82 LLVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEAS  135 (173)
T ss_dssp             EEEEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHH
T ss_pred             eeecccccccccchhhh-hhHHHHHHhccCCCceEEEEEeechhhccccchhhhh
Confidence            99999999999999988 8777766546678899999999999877665444443

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=2.4e-29  Score=166.70  Aligned_cols=131  Identities=44%  Similarity=0.852  Sum_probs=114.0

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      ..+.+||+++|.+|+|||||++++.++++ ..+.++.+.+.....+...+..+.+.+|||||++.+..++..+++++|++
T Consensus         2 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~   81 (169)
T d3raba_           2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   81 (169)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEE
T ss_pred             CCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            45689999999999999999999999988 56677888888888888899999999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      ++|||+++++++..+.. |...+... .....|+++|+||+|+...+.+..++.
T Consensus        82 ilv~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iivv~nK~D~~~~~~v~~~~~  133 (169)
T d3raba_          82 ILMYDITNEESFNAVQD-WSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERG  133 (169)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHH-CCSCCEEEEEEECTTCGGGCCSCHHHH
T ss_pred             EEEEECccchhhhhhhh-hhhhhhcc-cCCcceEEEEEeecccccccccchhhh
Confidence            99999999999999988 65555554 566789999999999987766655444

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.4e-29  Score=166.95  Aligned_cols=132  Identities=47%  Similarity=0.844  Sum_probs=114.7

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      .+..+||+++|.+|+|||||++++.++.+ ....++.+.++....+.+++..+.+.+|||+|++.+..++..++++++++
T Consensus         2 ~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~   81 (171)
T d2ew1a1           2 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL   81 (171)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceE
Confidence            35679999999999999999999999998 56677777888888889999999999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhh
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFW  143 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~  143 (154)
                      ++|+|++++.+++.+.. |...+... .....|++||+||+|+.+.+++..++..
T Consensus        82 i~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~~~ilvgnK~D~~~~~~v~~~~~~  134 (171)
T d2ew1a1          82 ILTYDITCEESFRCLPE-WLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAE  134 (171)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHH
T ss_pred             EEeeecccchhhhhhhh-hhhhhccc-ccccccEEEEEeecccccccchhhhHHH
Confidence            99999999999999998 66655554 4567899999999999877666554443

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6e-29  Score=165.60  Aligned_cols=126  Identities=48%  Similarity=0.835  Sum_probs=109.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      ++.+||+++|.+|||||||+++++++.+ ..+.++.+.+.....+..++..+.+.+||++|++.+...+..+++++|+++
T Consensus         2 ~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i   81 (175)
T d2f9la1           2 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   81 (175)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEE
Confidence            5679999999999999999999999988 566677777777778888999999999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhh
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLF  138 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~  138 (154)
                      +|||+++++++..... |...+... ...+.|+++||||+|+.+.+...
T Consensus        82 ~v~d~~~~~S~~~~~~-~~~~i~~~-~~~~~piilvgnK~Dl~~~~~~~  128 (175)
T d2f9la1          82 LVYDIAKHLTYENVER-WLKELRDH-ADSNIVIMLVGNKSDLRHLRAVP  128 (175)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSC
T ss_pred             EEEECCCcccchhHHH-HHHHHHHh-cCCCCcEEEEEeeecccccccch
Confidence            9999999999999998 77777666 45678999999999997665443

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.9e-29  Score=166.80  Aligned_cols=131  Identities=38%  Similarity=0.732  Sum_probs=108.5

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      +.+||+++|.+|||||||++++.++++ ..+.++.+..........++..+.+.+||++|++.+..++..+++++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            579999999999999999999999998 5667788888888888889999999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWH  144 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~  144 (154)
                      |||++++++|+.+.. |.+.+... .....|++|||||+|+.+++++..++...
T Consensus        82 v~d~~~~~Sf~~~~~-~~~~~~~~-~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~  133 (167)
T d1z08a1          82 VYDITDEDSFQKVKN-WVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAES  133 (167)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             EEeCCchhHHHhhhh-hhhhcccc-cccccceeeeccccccccccccchHHHHH
Confidence            999999999999998 77666554 45677899999999998887776655544

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=4.9e-29  Score=165.25  Aligned_cols=130  Identities=31%  Similarity=0.518  Sum_probs=112.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      .+||+++|.+++|||||++++.++.+ ..+.++.+..+ ......++..+.+.+||++|++.+......+++.+|++++|
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            58999999999999999999999988 55566665444 55677899999999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhh
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWH  144 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~  144 (154)
                      ||++++.+|+.+.. |...+.+.....+.|+++++||+|+...+++..+++..
T Consensus        83 ~d~~d~~Sf~~~~~-~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~  134 (169)
T d1x1ra1          83 YSVTDKASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE  134 (169)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHH
T ss_pred             cccccchhhhccch-hhHHHHhhccccCccEEEEecccchhhhceeehhhHHH
Confidence            99999999999988 88877766566788999999999998887776555543

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.7e-29  Score=165.65  Aligned_cols=128  Identities=31%  Similarity=0.603  Sum_probs=113.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      .+||+++|++|+|||||+++|..+++ ..+.++.+.+........++..+.+.+||++|++.+......+++.+|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            37999999999999999999999888 66678888888888888999999999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhh
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFW  143 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~  143 (154)
                      ||++++++++.+.. |.+.+...  ..+.|+++||||+|+.+++++..++..
T Consensus        82 ~d~~~~~s~~~~~~-~~~~i~~~--~~~~~iilVgnK~Dl~~~~~v~~~~~~  130 (164)
T d1z2aa1          82 FSTTDRESFEAISS-WREKVVAE--VGDIPTALVQNKIDLLDDSCIKNEEAE  130 (164)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHH--HCSCCEEEEEECGGGGGGCSSCHHHHH
T ss_pred             Eeccchhhhhhccc-cccccccc--CCCceEEEeeccCCcccceeeeehhhH
Confidence            99999999999987 88888765  346899999999999877766554443

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.5e-28  Score=166.28  Aligned_cols=133  Identities=59%  Similarity=0.952  Sum_probs=115.9

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (154)
                      ..+..+||+|+|+++||||||++++.++.+ ..+.++.+.+.....+.+++..+.+.+|||+|++.+..++..+++++|+
T Consensus         2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~   81 (194)
T d2bcgy1           2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   81 (194)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            356789999999999999999999999988 6667888888888888999999999999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhh
Q 031704           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFW  143 (154)
Q Consensus        88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~  143 (154)
                      +++|||+++++++..+.. |...+... ...+.|+++|+||+|+.+.+.+..++..
T Consensus        82 ~i~v~d~t~~~s~~~~~~-~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~  135 (194)
T d2bcgy1          82 IIIVYDVTDQESFNGVKM-WLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAK  135 (194)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHH
T ss_pred             EEEEEeCcchhhhhhHhh-hhhhhhhc-ccCCceEEEEEeccccccccchhHHHHh
Confidence            999999999999999988 55555544 5677899999999999877766554443

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.4e-29  Score=166.07  Aligned_cols=123  Identities=32%  Similarity=0.557  Sum_probs=106.4

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      +...+||+++|.+|+|||||+++|+.+++ ..+.++.+ ..........+..+.+.+||++|++.+...+..+++++|++
T Consensus         6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~   84 (185)
T d2atxa1           6 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   84 (185)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhccccccee
Confidence            56779999999999999999999999998 55556665 44556667788899999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ++|||++++++|+.+...|.+.++..  ..+.|+++|+||+|+.+..
T Consensus        85 ilv~d~t~~~Sf~~~~~~~~~~~~~~--~~~~~~ilvgnK~Dl~~~~  129 (185)
T d2atxa1          85 LICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDP  129 (185)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCH
T ss_pred             eeccccchHHHHHHHHHHHHHHHHhc--CCCCCeeEeeeccccccch
Confidence            99999999999999887677777765  4578999999999997643

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.6e-28  Score=162.31  Aligned_cols=131  Identities=37%  Similarity=0.680  Sum_probs=114.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      +.+||+++|.++||||||+++|..+++ ..+.++.+.+........++....+.+||++|++.+..++..++++++++++
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            468999999999999999999999998 6667788888888888888899999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWH  144 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~  144 (154)
                      |||++++++++.+.. |...+... ...+.|+++|+||+|+.+++.+..++...
T Consensus        83 v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~  134 (167)
T d1z0ja1          83 VYDITKEETFSTLKN-WVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKD  134 (167)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             EeeechhhhhhhHHH-hhhhhhhc-cCCcceEEEecccchhccccchhHHHHHH
Confidence            999999999999988 66666655 55788999999999998777776555443

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-28  Score=162.99  Aligned_cols=130  Identities=47%  Similarity=0.845  Sum_probs=113.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      ++.+||+++|.+++|||||+++++++++ ..+.++.+.+........++..+.+.+||++|++.+..++..+++++|+++
T Consensus         2 ~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~i   81 (166)
T d1z0fa1           2 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   81 (166)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEE
Confidence            4679999999999999999999999998 455666777788888889999999999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      +|+|+++.++++.+.. |...+... .....|+++++||+|+...+.+..++.
T Consensus        82 lv~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~  132 (166)
T d1z0fa1          82 MVYDITRRSTYNHLSS-WLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEA  132 (166)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHH
T ss_pred             EEeccCchHHHHHHHH-HHHHHHhh-ccccceEEEEcccccchhhcccHHHHH
Confidence            9999999999999988 66666655 566789999999999977666654443

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.9e-29  Score=167.43  Aligned_cols=122  Identities=34%  Similarity=0.576  Sum_probs=105.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      .+||+++|++|+|||||++++..+.+ ..+.|+.+.++....+..++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            58999999999999999999999988 56668888888888888899999999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      ||++++++|+.+.. |...+...  ..+.|+++||||+|+..++..
T Consensus        83 ~d~~~~~Sf~~~~~-~~~~~~~~--~~~~piilvgnK~Dl~~~~~~  125 (170)
T d1i2ma_          83 FDVTSRVTYKNVPN-WHRDLVRV--CENIPIVLCGNKVDIKDRKVK  125 (170)
T ss_dssp             EETTSGGGGTTHHH-HHHHHHHH--HCSCCEEEEEECCCCSCSCCT
T ss_pred             cccccccccchhHH-HHHHHhhc--cCCCceeeecchhhhhhhhhh
Confidence            99999999999998 77776655  357899999999999765543

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.3e-29  Score=163.45  Aligned_cols=129  Identities=33%  Similarity=0.526  Sum_probs=109.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      +.+||+++|.+|||||||+++++++.+ ..+.++.+ +........++..+.+.+||++|++.+......+++++|++++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            358999999999999999999999998 44455554 4556677789999999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      |||++++.+++.+.. |...+.......+.|++|||||+|+.+.+.+...+.
T Consensus        81 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~  131 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEG  131 (167)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHH
T ss_pred             eeeecchhhhhhhhc-hhhhhhhhccCCCCCEEEEEEccchhhcccchHHHH
Confidence            999999999999999 777666654567889999999999977666544443

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.96  E-value=7.9e-29  Score=164.09  Aligned_cols=131  Identities=33%  Similarity=0.583  Sum_probs=110.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      +.+||+++|.+++|||||+++++.+++ ..+.++.+.++. ..+.+++..+.+.+||++|++.+..+...+++++|++++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~-~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccc-cccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            468999999999999999999999998 566677776653 566789999999999999999999888999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWH  144 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~  144 (154)
                      |||++++.+++.+.. |.+.+.......+.|+++|+||+|+...+++..++...
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~  134 (168)
T d1u8za_          82 VFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN  134 (168)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             EeeccchhhhhhHHH-HHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHH
Confidence            999999999999988 88888776567789999999999998777665555433

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.8e-29  Score=162.83  Aligned_cols=129  Identities=36%  Similarity=0.676  Sum_probs=111.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      +||+++|.+|||||||++++.++++ ..+.++.+.+........++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            5899999999999999999999998 566777777888888888889999999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhh
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWH  144 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~  144 (154)
                      |++++.+++.+.. |...+... ...+.|+++||||+|+.+.+++..++...
T Consensus        81 d~~~~~s~~~i~~-~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~  130 (164)
T d1yzqa1          81 DITNVNSFQQTTK-WIDDVRTE-RGSDVIIMLVGNKTDLADKRQVSIEEGER  130 (164)
T ss_dssp             ETTCHHHHHTHHH-HHHHHHHH-HTTSSEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             ccccccchhhhHh-hHHHHHHh-cCCCceEEEEecccchhhhhhhhHHHHHH
Confidence            9999999999988 66666554 45678999999999998776665544433

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3e-28  Score=161.89  Aligned_cols=130  Identities=47%  Similarity=0.812  Sum_probs=108.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      +.+||+++|++|||||||+++++++++ ..+.++.+.+.........+..+.+.+||++|++.+...+..+++.+|++++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            568999999999999999999999998 5566677777777888888899999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFW  143 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~  143 (154)
                      |||++++.+++.+.. |...+... ...+.|++||+||+|+...+....++..
T Consensus        82 v~d~~~~~sf~~~~~-~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~  132 (173)
T d2a5ja1          82 VYDITRRETFNHLTS-WLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGE  132 (173)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EEeecChHHHHhHHH-HHHHHHHh-CCCCCeEEEEecCCchhhhhhhHHHHHH
Confidence            999999999999999 66666655 4567899999999999766655444433

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.5e-28  Score=162.44  Aligned_cols=129  Identities=33%  Similarity=0.509  Sum_probs=109.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      +.+||+++|.+|||||||++++..+++ ..+.++.+..+ ...+..++..+.+.+||++|++.+...+..+++.+|++++
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            358999999999999999999999998 45566666444 4556778899999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      |||++++.+|+.+.. |...+.+.....+.|++|||||+|+...+.+..++.
T Consensus        81 v~d~~~~~sf~~~~~-~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~  131 (167)
T d1c1ya_          81 VYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG  131 (167)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHH
T ss_pred             eeeccchhhhHhHHH-HHHHHHHhcCCCCCeEEEEEEecCcccccccchhHH
Confidence            999999999999999 777666554567889999999999987766654443

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.4e-28  Score=163.47  Aligned_cols=132  Identities=50%  Similarity=0.916  Sum_probs=90.1

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (154)
                      ..++.+||+++|.+++|||||+++|+++.+ ....++.+.+.....+..++..+.+.+||+||++.+..++..+++++|+
T Consensus         2 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~   81 (173)
T d2fu5c1           2 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   81 (173)
T ss_dssp             CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred             cccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCE
Confidence            356789999999999999999999999887 5556777778888889999999999999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      +++|||++++.+++.+.. |...+... ...+.|+++|+||+|+...+.....+.
T Consensus        82 ~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iilv~~k~D~~~~~~~~~~~~  134 (173)
T d2fu5c1          82 IMLVYDITNEKSFDNIRN-WIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERG  134 (173)
T ss_dssp             EEEEEETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHH
T ss_pred             EEEEEECCChhhHHHHHH-HHHHhhhh-ccCCceEEEEEecccchhhcccHHHHH
Confidence            999999999999999988 66666554 567789999999999987766544333

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6e-28  Score=160.93  Aligned_cols=121  Identities=30%  Similarity=0.549  Sum_probs=104.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      +.||+++|.+|+|||||++++..+.+. .+.++.+ .........++..+.+.+||++|++.+...+..+++++|++++|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            579999999999999999999999984 4556655 44556677889999999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      ||++++++|+.+...|.+.+...  ..+.|++||+||+|+...+.
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~  123 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEH  123 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECGGGTTCHH
T ss_pred             cccchhHHHHHHHHHHHHHHHHh--CCCCceEEeeecccccchhh
Confidence            99999999999888677777765  45789999999999976543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.7e-28  Score=160.99  Aligned_cols=132  Identities=39%  Similarity=0.683  Sum_probs=115.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      -.+||+++|.+|+|||||+++|..+++ ..+.++.+.+.........+..+.+.+||++|++.+..++..+++++|++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            468999999999999999999999998 5667888888888888889999999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHF  145 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~  145 (154)
                      |+|+++.++++.+.. |...+... ...+.|+++|+||+|+.+++++..++...+
T Consensus        85 v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~  137 (170)
T d1r2qa_          85 VYDITNEESFARAKN-WVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSY  137 (170)
T ss_dssp             EEETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EeccchhhHHHHHHH-Hhhhhhhc-cCCCceEEeecccccccccccccHHHHHHH
Confidence            999999999999988 66555544 466789999999999988877766555443

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.2e-28  Score=161.44  Aligned_cols=130  Identities=29%  Similarity=0.512  Sum_probs=107.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      ..+||+++|.+|||||||++++.++.+ ..+.++.+ ......+.+++..+.+.+||++|.+.+......+++.+|++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence            348999999999999999999999998 45556655 4556777889999999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFW  143 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~  143 (154)
                      |||++++++++.+.. |...+.........|++||+||+|+.+++.+..++..
T Consensus        83 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~  134 (171)
T d2erya1          83 VFSVTDRGSFEEIYK-FQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQ  134 (171)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHH
T ss_pred             eeccccccchhhHHH-HhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHH
Confidence            999999999999988 7776665556778899999999999877766554443

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.3e-27  Score=158.26  Aligned_cols=133  Identities=42%  Similarity=0.783  Sum_probs=104.4

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CC-CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (154)
                      .+..+||+++|++++|||||+++++++++ .. ..++.+.+.....+..++..+.+++|||+|++.+..++..+++++|+
T Consensus         3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~   82 (170)
T d2g6ba1           3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   82 (170)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCce
Confidence            45679999999999999999999999987 33 34455667777788889999999999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhh
Q 031704           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWH  144 (154)
Q Consensus        88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~  144 (154)
                      +++|||+++++++..+.. |...+... .....|+++|+||+|+.+++.+..+++..
T Consensus        83 ~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iilv~~k~d~~~~~~v~~~~~~~  137 (170)
T d2g6ba1          83 LLLLYDVTNKASFDNIQA-WLTEIHEY-AQHDVALMLLGNKVDSAHERVVKREDGEK  137 (170)
T ss_dssp             EEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECCSTTSCCCSCHHHHHH
T ss_pred             eEEEecCCcccchhhhhh-hhhhhhhc-cCCCceEEEEEeeechhhcccccHHHHHH
Confidence            999999999999999999 55444443 45678999999999998887776655443

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=6.1e-28  Score=159.07  Aligned_cols=132  Identities=37%  Similarity=0.689  Sum_probs=112.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc-cccccccCccEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT-LTSSYYRGAQGII   89 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~v   89 (154)
                      +.+||+++|.+|+|||||++++..+++ ....++.+................+.+||++|...... .+..+++++|+++
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            468999999999999999999999998 56666777777778888899999999999999877654 4567889999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhh
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWH  144 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~  144 (154)
                      +|||++++++++.+.. |...+.......+.|++|||||+|+.+++++..++...
T Consensus        81 lv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~  134 (165)
T d1z06a1          81 FVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK  134 (165)
T ss_dssp             EEEETTCHHHHHTHHH-HHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             EEEEeehhhhhhhhhh-hhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHH
Confidence            9999999999999988 88777776566788999999999998877776655443

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.3e-28  Score=160.38  Aligned_cols=130  Identities=45%  Similarity=0.852  Sum_probs=111.9

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      .+..+||+++|.+|||||||++++.++++ ..+.++.+.+.....+..++....+.+||++|++.+..++..+++.++++
T Consensus         2 ~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~   81 (174)
T d2bmea1           2 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   81 (174)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             ccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEE
Confidence            45679999999999999999999999998 56667777777777788889999999999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG  141 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~  141 (154)
                      ++|+|.++++++..+.. |...+... ...+.|+++|+||+|+....+....+
T Consensus        82 i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piivv~nK~D~~~~~~~~~~~  132 (174)
T d2bmea1          82 LLVYDITSRETYNALTN-WLTDARML-ASQNIVIILCGNKKDLDADREVTFLE  132 (174)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHH
T ss_pred             EEEEecccchhHHHHhh-hhcccccc-cCCceEEEEEEecccccchhchhhhH
Confidence            99999999999999988 66666554 45689999999999997666554433

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.6e-28  Score=161.81  Aligned_cols=130  Identities=26%  Similarity=0.375  Sum_probs=107.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      .+||+++|.+|+|||||+++++++.+ ..+.++.+..+ ......++..+.+.+||++|.+.+......+++.+|++++|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            48999999999999999999999998 45567776544 44567889999999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhh-hcCCCCCcEEEEEeCCCCCCchhhhhhhhhh
Q 031704           92 YDVTRRDTFTNLADIWAKEIDL-YSTNQDCIKLLVGNKVDKVCPWRLFLSGFWH  144 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~  144 (154)
                      ||++++++++.+.. |...+.. .....+.|++|||||+|+...+++..++...
T Consensus        81 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~  133 (171)
T d2erxa1          81 YSITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA  133 (171)
T ss_dssp             EETTCHHHHHTTHH-HHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             eecccccchhcccc-hhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHH
Confidence            99999999999988 6655544 3335678999999999998777776555443

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5e-28  Score=160.17  Aligned_cols=129  Identities=28%  Similarity=0.429  Sum_probs=106.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      .+||+++|++|+|||||+++++.+.+ ..+.|+.+..+.. ....++..+.+.+||++|.+.+. ....+++.++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~-~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH-QATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE-EEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccc-cccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            48999999999999999999999998 6667777776543 44568899999999999998764 455678899999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhh
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWH  144 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~  144 (154)
                      ||++++++++.+.. |...........+.|+++||||+|+..++.+..++...
T Consensus        80 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~  131 (168)
T d2atva1          80 YDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEK  131 (168)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             cccCCccchhhhhh-hcccccccccccCcceeeeccchhhhhhccCcHHHHHH
Confidence            99999999999988 66555554456788999999999998777776555433

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.7e-27  Score=159.59  Aligned_cols=123  Identities=30%  Similarity=0.502  Sum_probs=106.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII   89 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v   89 (154)
                      .+.+||+++|.+|+|||||+++|+.+.+ ..+.++.+ ......+..++..+.+.+||++|++.+...+..+++.+|+++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            4679999999999999999999999998 55566665 444566778999999999999999999999999999999999


Q ss_pred             EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      +|||++++++|+.+...|...++..  ..+.|++||+||+|+.+++.
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~  126 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKD  126 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECHHHHTCHH
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHh--CCCCcEEEEeecccchhhhh
Confidence            9999999999999988677777665  45789999999999976654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=2.1e-27  Score=158.69  Aligned_cols=118  Identities=27%  Similarity=0.553  Sum_probs=102.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      +.||+++|.+|+|||||+++++.+.+ ..+.|+.+ ......+..++..+.+.+||++|++.+...+..+++++|++++|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-ecccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            47999999999999999999999998 44556555 44455667788999999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      ||+++++||+.+...|...+...  ..+.|+++||||+|+..
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~--~~~~~iilVgnK~Dl~~  120 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRT  120 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGG
T ss_pred             eecccCCCHHHHHHHHHHHHhcc--CCcceEEEEEecccccc
Confidence            99999999999988677777654  45789999999999864

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.4e-27  Score=159.08  Aligned_cols=120  Identities=32%  Similarity=0.519  Sum_probs=104.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      .+||+++|++|+|||||++++..+.+ ..+.++.+ .........++..+.+.+||++|++.+...+..+++++|++++|
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            48999999999999999999999998 55566666 44556677888999999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ||+++++||+.+...|.+.+...  ..+.|+++|+||+|+.+..
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~--~~~~~i~lvgnK~Dl~~~~  123 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDP  123 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECGGGGGCH
T ss_pred             cccchHHHHHHHHHHHHHHHhhc--CCCCceEEEeccccccccc
Confidence            99999999999988566666654  4678999999999996543

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.1e-27  Score=157.72  Aligned_cols=129  Identities=23%  Similarity=0.345  Sum_probs=104.5

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCC---cccccccccccccCcc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG---QERFRTLTSSYYRGAQ   86 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g---~~~~~~~~~~~~~~~~   86 (154)
                      ..+||+++|.+|+|||||++++.+..+  ....++.+.+.....+.+++..+.+.+||+++   ++++  +...+++.+|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            458999999999999999999998766  34456667777778888999999999999875   3433  4566789999


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhh
Q 031704           87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFW  143 (154)
Q Consensus        87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~  143 (154)
                      ++++|||++++.+++.+.. |...+.......+.|+++|+||+|+.+.+++..++..
T Consensus        80 ~~ilvfd~t~~~s~~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~  135 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGR  135 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHH
T ss_pred             eeeeeecccccchhhhhhh-hhhhhhhccccCCceEEEEeccccccccccccHHHHH
Confidence            9999999999999999998 7777766545678999999999999887777655544

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.1e-28  Score=162.87  Aligned_cols=134  Identities=37%  Similarity=0.709  Sum_probs=110.5

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEEC----------CeEEEEEEEeCCCcccccccc
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG----------GKKMKLAIWDTAGQERFRTLT   78 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~   78 (154)
                      .+..+||+++|++|+|||||+++|+++++ ..+.++.+.++....+..+          ...+.+.+|||+|++.+..++
T Consensus         2 ~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~   81 (186)
T d2f7sa1           2 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT   81 (186)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHH
Confidence            35679999999999999999999999988 4555666666655555443          235789999999999999999


Q ss_pred             cccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhh
Q 031704           79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWH  144 (154)
Q Consensus        79 ~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~  144 (154)
                      ..+++++|++++|||++++.+++.+.. |...+.........|++||+||+|+...+++..++...
T Consensus        82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~  146 (186)
T d2f7sa1          82 TAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARE  146 (186)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHH-HHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             HHHHhcCCEEEEEEeccccccceeeee-ccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHH
Confidence            999999999999999999999999988 88777666556678999999999998877775555443

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=7.8e-27  Score=153.95  Aligned_cols=121  Identities=58%  Similarity=0.954  Sum_probs=102.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      .+||+++|.+++|||||+++++++++ ..+.++.+.++....+..++..+.+.+|||||++.+..++..+++++|++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999998 66678888888888999999999999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ||++++++++.+.. |....... .....|++++++|.|+....
T Consensus        82 ~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~~i~~~~k~d~~~~~  123 (166)
T d1g16a_          82 YDITDERTFTNIKQ-WFKTVNEH-ANDEAQLLLVGNKSDMETRV  123 (166)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCTTCC
T ss_pred             EECCCccCHHHHHh-hhhhhhcc-ccCcceeeeecchhhhhhhh
Confidence            99999999999888 66555554 55677899999999986543

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=9.6e-27  Score=154.06  Aligned_cols=120  Identities=44%  Similarity=0.791  Sum_probs=106.7

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      .+||+++|.+|+|||||+++++++++ ..+.++.+.++....+..++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            58999999999999999999999998 66677888888888889999999999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      ||++++.+++.+.. |....... .....|+++|+||+|+.+.
T Consensus        83 ~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~~~~v~nk~d~~~~  123 (170)
T d1ek0a_          83 YDVTKPQSFIKARH-WVKELHEQ-ASKDIIIALVGNKIDMLQE  123 (170)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGS
T ss_pred             EeCCcccchhhhhh-hhhhhccc-cccccceeeeecccccccc
Confidence            99999999999988 66555544 4567899999999998543

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.4e-26  Score=152.81  Aligned_cols=119  Identities=32%  Similarity=0.635  Sum_probs=104.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      .+||+++|+++||||||+++|+++.+ ..+.++.+..+. ......+..+.+.+||++|.+.+......+++.++++++|
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeec-cceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            48999999999999999999999998 445666665554 4456788899999999999999999899999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      +|++++.+++.+.. |...+.......+.|+++|+||+|+..
T Consensus        82 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~  122 (166)
T d1ctqa_          82 FAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDLAA  122 (166)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHHTCSSCCEEEEEECTTCSC
T ss_pred             ecccccccHHHHHH-HHHHHHHhcCCCCCeEEEEeccccccc
Confidence            99999999999988 998888775667889999999999964

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.6e-26  Score=152.51  Aligned_cols=132  Identities=36%  Similarity=0.685  Sum_probs=109.1

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      ....+||+++|.++||||||++++..+++ ..+.++.+.+........++..+.+.+||++|.......+..++..++++
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceE
Confidence            45679999999999999999999999998 56777777788888888899999999999999999998899999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhc---CCCCCcEEEEEeCCCCCCchhhhhhhhh
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYS---TNQDCIKLLVGNKVDKVCPWRLFLSGFW  143 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~~ivv~nK~Dl~~~~~~~~~~~~  143 (154)
                      ++++|.+++.+++.+.. |.+.+....   ...+.|+++|+||+|+.+ +++..++..
T Consensus        83 i~~~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~~~  138 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQ  138 (174)
T ss_dssp             EEEEETTCHHHHHTHHH-HHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHH
T ss_pred             EEEEeeecccccchhhh-HHHHHHHHhccccCCCceEEEeccccchhh-ccCcHHHHH
Confidence            99999999999999888 887765542   335689999999999964 445444443

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.3e-26  Score=151.86  Aligned_cols=121  Identities=65%  Similarity=1.098  Sum_probs=108.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      ..+||+++|.+|+|||||++++.++++ ..+.++.+.......+..++..+.+.+|||||++.+..++..+++++|++++
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~   85 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   85 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            458999999999999999999999998 6666777777777788899999999999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      |||++++.+++.+.. |...+.........|+++++||.|...
T Consensus        86 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~i~~~~nk~d~~~  127 (177)
T d1x3sa1          86 VYDVTRRDTFVKLDN-WLNELETYCTRNDIVNMLVGNKIDKEN  127 (177)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred             EEECCCccccccchh-hhhhhcccccccceeeEEEeecccccc
Confidence            999999999999988 888887776677889999999999864

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=4.3e-26  Score=152.73  Aligned_cols=122  Identities=38%  Similarity=0.728  Sum_probs=107.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      .+||+++|.+|||||||+++++++++ ..+.++.+.+.....+...+..+.+.+||++|...+...+..++..+|++++|
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            48999999999999999999999998 66678888888888888899999999999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcC---CCCCcEEEEEeCCCCCCch
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYST---NQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~ivv~nK~Dl~~~~  135 (154)
                      +|.++..+++.+.. |.+.+.....   ..+.|+++|+||+|+.+.+
T Consensus        82 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~  127 (184)
T d1vg8a_          82 FDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKIDLENRQ  127 (184)
T ss_dssp             EETTCHHHHHTHHH-HHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC
T ss_pred             ecccchhhhhcchh-hHHHHHHHhccccccCCCEEEEEEeecccccc
Confidence            99999999999888 8876655422   3457999999999997543

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.94  E-value=4.8e-26  Score=149.88  Aligned_cols=120  Identities=26%  Similarity=0.457  Sum_probs=99.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY   92 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~   92 (154)
                      .+||+++|++|+|||||+++|.+..+....++.+....  .+..  ..+.+.+||+||++.++..+..+++.++++++|+
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~--~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~   77 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK--TLEH--RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   77 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEE--EEEE--TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeee--eccc--cccceeeeecCcchhhhhHHHhhhhhhhcceeee
Confidence            58999999999999999999999888777777764433  3333  4478999999999999999999999999999999


Q ss_pred             ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      |+++..++......|...+... ...+.|+++|+||+|+.+....
T Consensus        78 d~~d~~~~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~  121 (165)
T d1ksha_          78 DSADRQRMQDCQRELQSLLVEE-RLAGATLLIFANKQDLPGALSC  121 (165)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCCH
T ss_pred             ecccchhHHHHHHhhhhhhhhc-ccCCCceEEEEeccccccccCH
Confidence            9999999998888566655443 5567899999999999765544

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.9e-26  Score=152.28  Aligned_cols=123  Identities=37%  Similarity=0.753  Sum_probs=90.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEE-CCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVAL-GGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      .+||+++|++|||||||++++.++++ ..+.++.+.+........ +.....+.+||++|++.+...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            58999999999999999999999988 555666665555555443 4456789999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcC---CCCCcEEEEEeCCCCCCchh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYST---NQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      |||++++.+++.+.. |.+.+.....   ..+.|+++|+||+|+.+.++
T Consensus        82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~  129 (175)
T d1ky3a_          82 VYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNKIDAEESKK  129 (175)
T ss_dssp             EEETTCHHHHHTHHH-HHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGC
T ss_pred             Eeecccccccchhhh-cchhhhhhhhhcccccCcEEEEecccchhhhhc
Confidence            999999999999887 8877765422   34679999999999986654

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.93  E-value=3.6e-26  Score=151.85  Aligned_cols=124  Identities=27%  Similarity=0.399  Sum_probs=100.8

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG   87 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (154)
                      .+..+.+||+++|++|+|||||++++.++++....++.+.+.  ..+...  .+.+.+||++|++.++..+..+++.+|+
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~--~~i~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~   86 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI--KSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDI   86 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEE--EEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSE
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeE--EEeccC--CeeEeEeeccccccchhHHHHHhhccce
Confidence            344567999999999999999999999998865566655433  333333  4688999999999999999999999999


Q ss_pred             EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      +++|+|+++..++..+.. |...+.......+.|++||+||+|+.++..
T Consensus        87 ii~v~d~~d~~s~~~~~~-~~~~~~~~~~~~~~pillv~nK~Dl~~~~~  134 (176)
T d1fzqa_          87 LIYVIDSADRKRFEETGQ-ELTELLEEEKLSCVPVLIFANKQDLLTAAP  134 (176)
T ss_dssp             EEEEEETTCGGGHHHHHH-HHHHHTTCGGGTTCCEEEEEECTTSTTCCC
T ss_pred             eEEeeccccccchhhhhh-hhhhhhhhhccCCCeEEEEEEecccccccc
Confidence            999999999999999888 554454444667889999999999976543

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.93  E-value=1e-25  Score=148.27  Aligned_cols=117  Identities=26%  Similarity=0.472  Sum_probs=97.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      .+||+++|++++|||||++++.++++ ..+.||.+.+..  .+..+  .+.+.+||+||++.+...+..++..++++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee--eeeee--eEEEEEeeccccccccccccccccccchhhcc
Confidence            58999999999999999999999988 556677665443  34443  46899999999999999999999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      +|+++.++++.... |...+.......+.|++||+||.|+.+.
T Consensus        78 ~d~~~~~~~~~~~~-~~~~~~~~~~~~~~pi~lv~nK~Dl~~~  119 (164)
T d1zd9a1          78 VDAADQEKIEASKN-ELHNLLDKPQLQGIPVLVLGNKRDLPGA  119 (164)
T ss_dssp             EETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred             cccccccccchhhh-hhhhhhhhhcccCCcEEEEEeccccchh
Confidence            99999999999988 5444443335678899999999999654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.6e-25  Score=146.32  Aligned_cols=115  Identities=19%  Similarity=0.322  Sum_probs=96.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      ..+||+++|.+++|||||+++++++++....++.+..+ ...+.+++..+.+.+|||+|+..+     .+++++|++++|
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilV   77 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFV   77 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEE-EEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeE-EEEeecCceEEEEEEeeccccccc-----ccccccceeEEE
Confidence            35999999999999999999999999976666666554 566788999999999999998764     367889999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhc--CCCCCcEEEEEeCCCCCC
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYS--TNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~~~ivv~nK~Dl~~  133 (154)
                      ||+++++||+.+.. |...+....  .....|+++|+||.|+..
T Consensus        78 fd~~~~~Sf~~~~~-~~~~i~~~~~~~~~~~pi~lV~~k~d~d~  120 (175)
T d2bmja1          78 FSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISA  120 (175)
T ss_dssp             EETTCHHHHHHHHH-HHHHHHHHCC--CCCCEEEEEEECTTCCS
T ss_pred             eecccchhhhhhHH-HHHHHHHHhhcccCCccEEEEeeecCcch
Confidence            99999999999988 887776542  235679999999988743

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.92  E-value=1.7e-25  Score=149.45  Aligned_cols=121  Identities=26%  Similarity=0.426  Sum_probs=95.0

Q ss_pred             CCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704            9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI   88 (154)
Q Consensus         9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   88 (154)
                      ...+.+||+++|.+|||||||++++..+.+....++.+......  ..  ..+.+.+||++|++.++..+..+++.+|++
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~--~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETL--SY--KNLKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEE--EE--TTEEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEE--ee--CCEEEEEEecccccccchhHHhhhccceeE
Confidence            34567999999999999999999999888866667766544332  22  347889999999999999999999999999


Q ss_pred             EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      ++|+|+++..++..... |...........+.|++||+||+|+.+.
T Consensus        89 i~v~d~~d~~s~~~~~~-~l~~~~~~~~~~~~piliv~NK~Dl~~~  133 (182)
T d1moza_          89 IFVVDSTDKDRMSTASK-ELHLMLQEEELQDAALLVFANKQDQPGA  133 (182)
T ss_dssp             EEEEETTCTTTHHHHHH-HHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred             EEEeeecccccchhHHH-HHHHHHHhhccCCcceEEEEEeeccccc
Confidence            99999999999998888 4444433335667899999999999653

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.92  E-value=2.5e-25  Score=147.58  Aligned_cols=119  Identities=29%  Similarity=0.481  Sum_probs=97.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      .+.+||+++|+++||||||++++..+.+....++.+......    ....+.+.+||+||...++..+..++++++++++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~~----~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   85 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETV----TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   85 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEEE----EETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEEe----eccceeeEEecCCCcchhhhHHHhhhcccceEEE
Confidence            456999999999999999999999888766566665443322    2345788999999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      |+|+++.+++..+...|...+... ...+.|+++|+||+|+.++
T Consensus        86 v~D~s~~~~~~~~~~~l~~~~~~~-~~~~~piiiv~NK~Dl~~~  128 (173)
T d1e0sa_          86 VVDCADRDRIDEARQELHRIINDR-EMRDAIILIFANKQDLPDA  128 (173)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTSG-GGTTCEEEEEEECTTSTTC
T ss_pred             EEecccchhHHHHHHHHHHHhhhc-ccccceeeeeeeccccccc
Confidence            999999999999988444444433 5667899999999999654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.88  E-value=1.6e-22  Score=134.47  Aligned_cols=137  Identities=20%  Similarity=0.176  Sum_probs=90.1

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CcceeeeEEEEEEECCeEEEEEEEeCCCccccc--------cccccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS--PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR--------TLTSSY   81 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~   81 (154)
                      +.-.|+++|.+|+|||||+|+|++.+.....  +..............+  ..+.+|||||.....        .....+
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~   81 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEA   81 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhcccccccc
Confidence            3457999999999999999999998753222  2222233333334443  467889999964332        223345


Q ss_pred             ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhh-hhhccccccC
Q 031704           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWH-FLLSKFYCSS  154 (154)
Q Consensus        82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~S  154 (154)
                      ++++|++++|+|++++....  ...|.+.++..  ..+.|+++|+||+|+....+...+.+.. +...+++++|
T Consensus        82 ~~~ad~il~v~D~~~~~~~~--~~~i~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iS  151 (178)
T d1wf3a1          82 LADVNAVVWVVDLRHPPTPE--DELVARALKPL--VGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLS  151 (178)
T ss_dssp             TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG--TTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECC
T ss_pred             cccccceeeeechhhhhccc--ccchhhheecc--ccchhhhhhhcccccccCHHHHHHHHHhhcccCceEEEe
Confidence            78899999999998865433  23355666543  3467999999999997665543333322 3455667766

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.88  E-value=1.5e-22  Score=131.68  Aligned_cols=117  Identities=25%  Similarity=0.459  Sum_probs=94.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD   93 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d   93 (154)
                      +||+++|++|||||||++++.++++....+......    ...+...+.+.+||++|...+......+++.++++++++|
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d   76 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCE----EEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEE----EEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEE
Confidence            489999999999999999999988854444433222    2334466789999999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      +.++.++..+.. |...+.........|+++++||.|+.+..
T Consensus        77 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~v~~k~d~~~~~  117 (160)
T d1r8sa_          77 SNDRERVNEARE-ELMRMLAEDELRDAVLLVFANKQDLPNAM  117 (160)
T ss_dssp             TTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred             ecChHHHHHHHH-HHHHHHHhhcccCceEEEEeecccccccc
Confidence            999999999888 55444444466778999999999987544

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=8.1e-22  Score=133.87  Aligned_cols=121  Identities=18%  Similarity=0.258  Sum_probs=90.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc-ccccccccCccEEEEEEE
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR-TLTSSYYRGAQGIIMVYD   93 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~v~v~d   93 (154)
                      +|+++|++|+|||||+++|+++++....++.+.+.....+. +...+.+.+||++|++.+. ..+..+++.++++++|+|
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D   80 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD   80 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEe-eeeeeeeeeeeccccccccchhhhhhhhhccccceEEE
Confidence            69999999999999999999998866667666554433322 4456789999999998875 456777889999999999


Q ss_pred             CCCcchH-HHHHHHHHHHHhhh-cCCCCCcEEEEEeCCCCCCchh
Q 031704           94 VTRRDTF-TNLADIWAKEIDLY-STNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        94 ~~~~~s~-~~~~~~~~~~~~~~-~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      +++..++ ......|...+... ......|++||+||+|+.+++.
T Consensus        81 ~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~  125 (207)
T d2fh5b1          81 SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS  125 (207)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC
T ss_pred             cccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCC
Confidence            9987664 44444344444432 2345679999999999976543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.85  E-value=7.7e-21  Score=125.68  Aligned_cols=121  Identities=24%  Similarity=0.394  Sum_probs=91.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      .+.+||+++|.+|||||||++++.++++....++.+....  ....  ..+.+.+||+++.+.....+..+++.++++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~   88 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE--EIVI--NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIV   88 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCE--EEEE--TTEEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEE--EEee--cceEEEEeccccccccccchhhhhccceeeee
Confidence            3558999999999999999999999988544444443222  2222  23578899999999999999999999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      ++|.++..+++.... +.............|+++|+||+|+.....
T Consensus        89 v~d~~d~~~~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~  133 (177)
T d1zj6a1          89 VVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKECMT  133 (177)
T ss_dssp             EEETTCTTTHHHHHH-HHHHHHTSGGGTTCEEEEEEECTTSTTCCC
T ss_pred             ecccccccchhhhhh-hhhhhhhcccccceEEEEEEEcccccccCc
Confidence            999999999988776 444444444567889999999999965543

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.84  E-value=2.9e-21  Score=127.44  Aligned_cols=134  Identities=19%  Similarity=0.180  Sum_probs=83.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc---------ccccccccccCc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER---------FRTLTSSYYRGA   85 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~~~   85 (154)
                      .|+++|.+|+|||||+|+|++.+........+.+.......+......+.++|++|...         .......++..+
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a   81 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA   81 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence            58999999999999999999876533333333332222223333445688899999322         122233446789


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhh-hhhhhhhhhccccccC
Q 031704           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLF-LSGFWHFLLSKFYCSS  154 (154)
Q Consensus        86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~S  154 (154)
                      |+++++.+......... .. |...++..    +.|+++|+||+|+.++.+.. ..++++.+..+++|+|
T Consensus        82 d~i~~~~~~~~~~~~~~-~~-~~~~l~~~----~~pviiv~NK~Dl~~~~~~~~~~~~~~~~~~~~i~iS  145 (171)
T d1mkya1          82 DLVLFVVDGKRGITKED-ES-LADFLRKS----TVDTILVANKAENLREFEREVKPELYSLGFGEPIPVS  145 (171)
T ss_dssp             SEEEEEEETTTCCCHHH-HH-HHHHHHHH----TCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECB
T ss_pred             cEEEEeecccccccccc-cc-cccccccc----cccccccchhhhhhhhhhhHHHHHHHhcCCCCeEEEe
Confidence            99999999876554432 22 45555554    67899999999997555442 2556667777888887

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=1.2e-21  Score=131.20  Aligned_cols=113  Identities=21%  Similarity=0.217  Sum_probs=87.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      +.+||+++|..|||||||+++|....++    +.+.  ...  .++...+.+.+||++|++.+...+..+++.++++++|
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~----t~~~--~~~--~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEA----GTGI--VET--HFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSC----CCSE--EEE--EEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCC----CccE--EEE--EEEeeeeeeeeeccccccccccchhhcccCCceeeeE
Confidence            3689999999999999999999877663    2332  122  2333456889999999999999999999999999999


Q ss_pred             EECCCcchH----------HHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           92 YDVTRRDTF----------TNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        92 ~d~~~~~s~----------~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      +|+++..++          ......|...+... .....|+++++||+|+..
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~-~~~~~~~~lv~Nk~d~~~  123 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNK-WFTDTSIILFLNKKDLFE  123 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCG-GGTTSEEEEEEECHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhccc-ccCCCCEEEEeccchhhh
Confidence            999887754          23334366666544 566789999999999743

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=5e-22  Score=129.78  Aligned_cols=116  Identities=23%  Similarity=0.259  Sum_probs=82.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------ccccccc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT--------LTSSYYR   83 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~   83 (154)
                      +||+++|.+|+|||||+|+|++.+..  ...+..........+...+  ..+.++|+||......        ....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            79999999999999999999988763  2333333333334444444  4677899999543322        1234467


Q ss_pred             CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      .+|++++++|..+..+++.... |.+.+...  ....|+++|+||+|+.++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~--~~~~~iilv~NK~Dl~~~  127 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEI-WPEFIARL--PAKLPITVVRNKADITGE  127 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHH-CHHHHHHS--CTTCCEEEEEECHHHHCC
T ss_pred             hccccceeeccccccchhhhhh-hhhhhhhc--ccccceeeccchhhhhhh
Confidence            8999999999998887766665 66666554  346899999999998654

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.83  E-value=1.1e-19  Score=118.78  Aligned_cols=119  Identities=24%  Similarity=0.405  Sum_probs=95.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      +.+||+++|.+|||||||++++.++++....++.+....  .+..  ..+.+.+||.++.+.........+...++++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE--TVTY--KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV   79 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEE--EEEE--TTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeee--eecc--CceEEEEeeccccccccccchhhhhhhhhhhhh
Confidence            348999999999999999999999998666666553332  2222  346788999999999999899999999999999


Q ss_pred             EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      +|+.+..++......+...+... .....|+++++||.|+.++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~iv~nk~Dl~~~~  122 (169)
T d1upta_          80 VDSCDRDRIGISKSELVAMLEEE-ELRKAILVVFANKQDMEQAM  122 (169)
T ss_dssp             EETTCCTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCC
T ss_pred             hhhhhcchhhhccchhhhhhhhh-ccccceEEEEEeeccccccc
Confidence            99999998888877444444433 56778999999999997654

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.8e-20  Score=125.96  Aligned_cols=118  Identities=20%  Similarity=0.183  Sum_probs=94.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV   91 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v   91 (154)
                      +.+||+++|..|||||||++++....+ .+.||.|....  .  +....+.+.+||++|++.+...+..+++.+++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~-~~~pTiG~~~~--~--~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHG-SGVPTTGIIEY--P--FDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTS-SCCCCCSCEEE--E--EECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCC-CCCceeeEEEE--E--EeccceeeeeccccccccccccccccccccceeeEe
Confidence            368999999999999999999988887 46788886543  2  333556789999999999999999999999999999


Q ss_pred             EECCCcch----------HHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           92 YDVTRRDT----------FTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        92 ~d~~~~~s----------~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      +|.++..+          +......|...+... ...+.|+++++||+|+...+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~-~~~~~~~~~v~NK~Dl~~~~  128 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYP-WFQNSSVILFLNKKDLLEEK  128 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCG-GGSSSEEEEEEECHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhh-hccCccEEEecchhhhhhhc
Confidence            99987542          333344488887765 56788999999999985433

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.5e-20  Score=126.59  Aligned_cols=114  Identities=23%  Similarity=0.316  Sum_probs=81.5

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      +.+||+++|.+|||||||++++.   + ..+.||.|...  ..+..  +.+.+.+||++|++.+...+..+++.++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~--~~~~~--~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~   73 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE--YDFEI--KNVPFKMVDVGGQRSERKRWFECFDSVTSILF   73 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEE--EEEEE--TTEEEEEEEECC-------CTTSCTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEE--EEEee--eeeeeeeecccceeeecccccccccccceeEE
Confidence            35899999999999999999993   3 45677877543  23333  45678999999999999999999999999999


Q ss_pred             EEECCCcc----------hHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           91 VYDVTRRD----------TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        91 v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      +++.++..          .++.....|...+.. ....+.|++|++||+|+..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~piilv~NK~Dl~~  125 (200)
T d1zcba2          74 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN-RVFSNVSIILFLNKTDLLE  125 (200)
T ss_dssp             EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC-GGGTTSEEEEEEECHHHHH
T ss_pred             EEEcCCcceeeeecccchhhhHHHHHHHHHhhC-hhhcCceEEEEeccchhhh
Confidence            99998743          345555534444433 3567889999999999854

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=1.7e-19  Score=117.18  Aligned_cols=115  Identities=25%  Similarity=0.378  Sum_probs=94.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV   94 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~   94 (154)
                      ||+++|++|||||||+|++.++++....|+.+.+..    ..........+||+++...+......+++.++++++++|.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSE----ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA   77 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEE----EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEE----EeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccc
Confidence            899999999999999999999998777777664443    2222345678999999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        95 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      ++..++..... |...........+.|+++++||.|+...
T Consensus        78 ~~~~~~~~~~~-~~~~~~~~~~~~~~~i~i~~~k~d~~~~  116 (166)
T d2qtvb1          78 ADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPNA  116 (166)
T ss_dssp             TCGGGHHHHHH-HHHHHHTCTTTTTCCEEEEEECTTSSSC
T ss_pred             cchhhhhhhhH-HHHhhhhhhccCCceEEEEecccccccc
Confidence            99999888887 5555555546778899999999999654

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.81  E-value=4.1e-20  Score=126.76  Aligned_cols=118  Identities=19%  Similarity=0.203  Sum_probs=91.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      ...+||+++|..|||||||++++....+   .||.|..  ...+.++  .+.+.+||++|++.++..+..+++.++++++
T Consensus         4 k~~~KilllG~~~vGKTsll~~~~~~~~---~pTiG~~--~~~~~~~--~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~   76 (221)
T d1azta2           4 RATHRLLLLGAGESGKSTIVKQMRILHV---VLTSGIF--ETKFQVD--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIF   76 (221)
T ss_dssp             HHSEEEEEECSTTSSHHHHHHHHHHHHC---CCCCSCE--EEEEEET--TEEEEEEECCCSTTTTTGGGGGCTTCSEEEE
T ss_pred             hhcCEEEEECCCCCCHHHHHHHHhcCCc---CCCCCeE--EEEEEEC--cEEEEEEecCccceeccchhhhcccccceEE
Confidence            3568999999999999999999976654   4666643  3344444  4678999999999999999999999999999


Q ss_pred             EEECCCcc----------hHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           91 VYDVTRRD----------TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        91 v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      ++|.++.+          ++.+....|...+... ...+.|++|++||+|+..++.
T Consensus        77 v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~-~~~~~~iil~~NK~Dl~~~k~  131 (221)
T d1azta2          77 VVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR-WLRTISVILFLNKQDLLAEKV  131 (221)
T ss_dssp             EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCG-GGSSCEEEEEEECHHHHHHHH
T ss_pred             EEEccccccccccccchHHHHHHHHHHHHHhcCh-hhCCCcEEEEechhhhhhhhh
Confidence            99998632          3444445355555543 456789999999999976653

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.80  E-value=5.7e-20  Score=122.18  Aligned_cols=120  Identities=16%  Similarity=0.118  Sum_probs=79.5

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC------cceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP------TIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA   85 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   85 (154)
                      +.++|+++|.+++|||||+|+|++........      ..+.+.......+......+.++|++|+..+.......+..+
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~   83 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII   83 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhhc
Confidence            56899999999999999999999754321111      111111111111112235678899999999888888889999


Q ss_pred             cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      |++++++|+.+...... ...| ..+..    .+.|+++|+||+|+....+.
T Consensus        84 d~~ilv~d~~~g~~~~~-~~~~-~~~~~----~~~p~iiv~NKiD~~~~~~~  129 (179)
T d1wb1a4          84 DLALIVVDAKEGPKTQT-GEHM-LILDH----FNIPIIVVITKSDNAGTEEI  129 (179)
T ss_dssp             CEEEEEEETTTCSCHHH-HHHH-HHHHH----TTCCBCEEEECTTSSCHHHH
T ss_pred             cccccccccccccchhh-hhhh-hhhhh----cCCcceeccccccccCHHHH
Confidence            99999999998654332 2212 23333    36899999999999876643

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=1.3e-19  Score=120.30  Aligned_cols=137  Identities=18%  Similarity=0.084  Sum_probs=80.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc----c---ccccccccCcc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF----R---TLTSSYYRGAQ   86 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~---~~~~~~~~~~~   86 (154)
                      +|+++|.+|+|||||+|+|++... ....+..+........ .......+.+|||||....    .   ......+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVV-EVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEE-ECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeecee-eecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            489999999999999999998766 2222222222222222 2333346789999994321    1   12234467889


Q ss_pred             EEEEEEECCCcchHHHHHHHHHHHHhhh-cCCCCCcEEEEEeCCCCCCchhhhh-hhhhhhhhccccccC
Q 031704           87 GIIMVYDVTRRDTFTNLADIWAKEIDLY-STNQDCIKLLVGNKVDKVCPWRLFL-SGFWHFLLSKFYCSS  154 (154)
Q Consensus        87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~S  154 (154)
                      ++++++|..... ...... +...+... ....++|+++|+||+|+..++.... .+........++++|
T Consensus        82 ~~~~~~d~~~~~-~~~~~~-~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~iS  149 (180)
T d1udxa2          82 VLLYVLDAADEP-LKTLET-LRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVS  149 (180)
T ss_dssp             EEEEEEETTSCH-HHHHHH-HHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECC
T ss_pred             hhhhhccccccc-ccchhh-hhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCeEEEEE
Confidence            999999986532 233333 33333222 1123578999999999987665432 222222233445555

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.78  E-value=2e-18  Score=114.22  Aligned_cols=119  Identities=22%  Similarity=0.344  Sum_probs=87.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM   90 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~   90 (154)
                      .+..||+++|++|||||||+++|.++.+....++.+.+...  +..++  ..+.+||+.+...+...+....+..+++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE--LTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   86 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEE--EEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeE--EEecc--cccccccccchhhhhhHHhhhhcccceeee
Confidence            45689999999999999999999999886666666655443  33343  356789999999888888899999999999


Q ss_pred             EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      ++|+++...+......+....... ...+.|+++++||.|+...
T Consensus        87 ~~d~~d~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~K~D~~~~  129 (186)
T d1f6ba_          87 LVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPEA  129 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTTC
T ss_pred             eeeccCccchHHHHHHHHHhhccc-ccCCCceEEEEeccCcccc
Confidence            999999999888777444444333 5567899999999999654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=4e-19  Score=120.18  Aligned_cols=117  Identities=21%  Similarity=0.275  Sum_probs=80.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccc----ccCccE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSY----YRGAQG   87 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~----~~~~~~   87 (154)
                      +.++|+++|++|||||||+|+|+++++..   +++.....  ..+......+.+||+||++.+...+..+    ...++.
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~---~tt~~~~~--~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP---TVVSQEPL--SAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCC---BCCCSSCE--EETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEecceE--EEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence            34689999999999999999999988742   22222222  2233444567899999988766555444    345688


Q ss_pred             EEEEEECCC-cchHHHHHHHHH----HHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           88 IIMVYDVTR-RDTFTNLADIWA----KEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        88 ~v~v~d~~~-~~s~~~~~~~~~----~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      +++++|+.+ ..+++.... |.    ..+.. ....+.|+++|+||+|+....
T Consensus        77 ~i~~vd~~~~~~~~~~~~~-~l~~~~~~~~~-~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          77 LIFMVDSTVDPKKLTTTAE-FLVDILSITES-SCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEEEETTSCTTCCHHHHH-HHHHHHHHHHH-HSTTCCCEEEEEECTTSTTCC
T ss_pred             cceEEEEecccccHHHHHH-HHHHHHHHHHH-HHhccCCeEEEEEeecccccC
Confidence            899999764 555555555 33    22222 356788999999999997654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=6.8e-20  Score=119.34  Aligned_cols=113  Identities=25%  Similarity=0.272  Sum_probs=74.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CcceeeeEEEEEEECCeEEEEEEEeCCCccccc---------ccccccc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTFEELS--PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR---------TLTSSYY   82 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~   82 (154)
                      +||+++|.+|+|||||+|+|++.+.....  +..........+...+  ..+.+|||||.....         ......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            69999999999999999999987653222  2222223333344444  467789999942211         1122235


Q ss_pred             cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        83 ~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      +.+|++++|+|++++.......- +. .+      ...++++++||.|+.+...
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~-~~-~~------~~~~~i~~~~k~d~~~~~~  124 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKI-LE-RI------KNKRYLVVINKVDVVEKIN  124 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHH-HH-HH------TTSSEEEEEEECSSCCCCC
T ss_pred             HhCCEEEEEEeCCCCcchhhhhh-hh-hc------ccccceeeeeeccccchhh
Confidence            67999999999998776544322 21 11      3567899999999976543

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=5.7e-19  Score=117.60  Aligned_cols=118  Identities=25%  Similarity=0.201  Sum_probs=74.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc------------ccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF------------RTL   77 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------------~~~   77 (154)
                      ..+||+++|.+|+|||||+|+|++.+..  ...+..........+..++.  .+.++|+||....            ...
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCc--eeeeeccCCccccccccccccccchhHH
Confidence            4599999999999999999999987651  22222222222233444443  4677899995322            122


Q ss_pred             ccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        78 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      ....++.+|++++|+|+.....-+ ... +...+..    .+.|+++|+||+|+....+.
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~~~-~~~-~~~~~~~----~~~~~i~v~nK~D~~~~~~~  138 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGITRQ-DQR-MAGLMER----RGRASVVVFNKWDLVVHREK  138 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHH-HHH-HHHHHHH----TTCEEEEEEECGGGSTTGGG
T ss_pred             HHHHHhcCCEEEEeecccccchhh-HHH-HHHHHHH----cCCceeeeccchhhhcchhh
Confidence            333457789999999998654322 222 3344443    36799999999999755543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.76  E-value=1.4e-18  Score=115.36  Aligned_cols=114  Identities=20%  Similarity=0.222  Sum_probs=71.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc---------------ccccc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF---------------RTLTS   79 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------------~~~~~   79 (154)
                      .|+++|.+|+|||||+|++++.+.. .....+.|.....+...    .+.++||||....               .....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~-~~~~~g~T~~~~~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~   76 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE   76 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce-eeCCCCEeecccccccc----cceecccCCceeccccccccccccchhhhhhhh
Confidence            5899999999999999999988762 22333333333333333    2568999994211               11123


Q ss_pred             ccccCccEEEEEEECCCcchHHHHHH---------HHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           80 SYYRGAQGIIMVYDVTRRDTFTNLAD---------IWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        80 ~~~~~~~~~v~v~d~~~~~s~~~~~~---------~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      ..++.+|++++|+|............         .+.+.+.    ..+.|+++|+||+|+....+.
T Consensus        77 ~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~----~~~~p~iiv~NK~D~~~~~~~  139 (184)
T d2cxxa1          77 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR----ELDIPTIVAVNKLDKIKNVQE  139 (184)
T ss_dssp             HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH----HTTCCEEEEEECGGGCSCHHH
T ss_pred             hcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHH----HcCCCEEEEEeeeehhhhHHH
Confidence            34567899999999875432221110         1122232    347899999999998765544

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.75  E-value=4e-18  Score=114.60  Aligned_cols=118  Identities=17%  Similarity=0.070  Sum_probs=83.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC-------C--------CCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSD-------T--------FEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL   77 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~-------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   77 (154)
                      .++|+++|..++|||||++++++.       .        ........|+|.......+......+.+.||||+.+|...
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~   82 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHH
Confidence            489999999999999999999741       0        0011123345555555555555667889999999999888


Q ss_pred             ccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        78 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ....++.+|++++|+|+.+.-.- +..+ ....+...   ...|+|++.||+|+..+.
T Consensus        83 ~~~~~~~aD~allVVda~~G~~~-QT~~-~~~~a~~~---~~~~iIv~iNK~D~~~~~  135 (196)
T d1d2ea3          83 MITGTAPLDGCILVVAANDGPMP-QTRE-HLLLARQI---GVEHVVVYVNKADAVQDS  135 (196)
T ss_dssp             HHHTSSCCSEEEEEEETTTCSCH-HHHH-HHHHHHHT---TCCCEEEEEECGGGCSCH
T ss_pred             HHHHHhhcCeEEEEEEcCCCCch-hHHH-HHHHHHHh---cCCcEEEEEecccccccH
Confidence            88889999999999999986442 2233 22233222   345789999999997644

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.74  E-value=2.1e-18  Score=118.61  Aligned_cols=115  Identities=19%  Similarity=0.223  Sum_probs=76.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCCC-CcceeeeEEEEE----------------EECCeEEEEEEEeCCCccccccc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHV----------------ALGGKKMKLAIWDTAGQERFRTL   77 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~----------------~~~~~~~~~~i~D~~g~~~~~~~   77 (154)
                      .|+++|.+++|||||+++|++....... ............                .+......+.++||||+..|...
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~   86 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTL   86 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTS
T ss_pred             EEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccccc
Confidence            4999999999999999999875321100 000000000001                11222346788999999999888


Q ss_pred             ccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        78 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      ....+..+|++++|+|+.+.-..... . ....+..    .+.|+++|+||+|+.+..
T Consensus        87 ~~~~~~~~D~~ilVvda~~g~~~~~~-~-~~~~~~~----~~~p~iivlNK~D~~~~~  138 (227)
T d1g7sa4          87 RKRGGALADLAILIVDINEGFKPQTQ-E-ALNILRM----YRTPFVVAANKIDRIHGW  138 (227)
T ss_dssp             BCSSSBSCSEEEEEEETTTCCCHHHH-H-HHHHHHH----TTCCEEEEEECGGGSTTC
T ss_pred             chhcccccceEEEEEecccCcccchh-H-HHHHhhc----CCCeEEEEEECccCCCch
Confidence            88889999999999999875443332 2 2333333    378999999999987554

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=1.2e-18  Score=117.93  Aligned_cols=118  Identities=18%  Similarity=0.111  Sum_probs=80.5

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCC--------CC-----CCC---CcceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDT--------FE-----ELS---PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR   75 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~--------~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   75 (154)
                      ..++|+++|..++|||||+++|+...        ..     ...   ...|++.......+.....+++++||||+.+|.
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~   81 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI   81 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence            35899999999999999999997320        00     000   011333333333333334567889999999999


Q ss_pred             ccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCc-EEEEEeCCCCCCch
Q 031704           76 TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKVCPW  135 (154)
Q Consensus        76 ~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl~~~~  135 (154)
                      ......++.+|++|+|+|+.+.-..+.... |. .+..    .+.| ++++.||+|+.+..
T Consensus        82 ~~~~~~~~~aD~avlVvda~~Gv~~qt~~~-~~-~~~~----~gi~~iiv~iNK~D~~~~~  136 (204)
T d2c78a3          82 KNMITGAAQMDGAILVVSAADGPMPQTREH-IL-LARQ----VGVPYIVVFMNKVDMVDDP  136 (204)
T ss_dssp             HHHHHHHTTCSSEEEEEETTTCCCHHHHHH-HH-HHHH----TTCCCEEEEEECGGGCCCH
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCcHHHHHH-HH-HHHH----cCCCeEEEEEEecccCCCH
Confidence            988888999999999999988765543332 32 2222    2444 77889999997654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.72  E-value=2.2e-18  Score=114.69  Aligned_cols=122  Identities=19%  Similarity=0.079  Sum_probs=71.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----cccc---ccccccCcc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----FRTL---TSSYYRGAQ   86 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~~~~~~~   86 (154)
                      +|+++|.+|||||||+|+|++.+. ....+..+...........+ ...+.+|||||...    ....   ....+..++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecC-CcEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            689999999999999999998776 22222222222223333322 22577899999522    1111   122345688


Q ss_pred             EEEEEEECCCcchHHHHHH--HHHHHHhh-hcCCCCCcEEEEEeCCCCCCchhh
Q 031704           87 GIIMVYDVTRRDTFTNLAD--IWAKEIDL-YSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        87 ~~v~v~d~~~~~s~~~~~~--~~~~~~~~-~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      .++++.+............  .+...... .....++|+++|+||+|+.+....
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~  135 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAEN  135 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHH
T ss_pred             hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHH
Confidence            8888888765433222211  11111111 123346799999999999866543

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.72  E-value=4.2e-17  Score=109.48  Aligned_cols=123  Identities=15%  Similarity=0.116  Sum_probs=81.1

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCccee----eeEEEEEEE-------------------CCeEEEEEE
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGV----DFKIKHVAL-------------------GGKKMKLAI   65 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~----~~~~~~~~~-------------------~~~~~~~~i   65 (154)
                      ...++|+++|..++|||||+++|++...  .......+.    .+....+..                   ......+.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            4668999999999999999999987433  111111111    111111111                   112456899


Q ss_pred             EeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           66 WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        66 ~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      +||||+..|.......+..+|+++++.|+.+........+ ....+...   ...+++++.||+|+.++.+.
T Consensus        83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e-~~~~~~~~---~~~~iiv~inK~D~~d~~~~  150 (195)
T d1kk1a3          83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTRE-HLMALQII---GQKNIIIAQNKIELVDKEKA  150 (195)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHH-HHHHHHHH---TCCCEEEEEECGGGSCHHHH
T ss_pred             eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHH-HHHHHHHh---cCccceeeeecccchhhHHH
Confidence            9999999999888888899999999999988643333333 22333332   23458889999999876543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.70  E-value=5.9e-17  Score=108.55  Aligned_cols=121  Identities=17%  Similarity=0.188  Sum_probs=69.8

Q ss_pred             cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc------------
Q 031704            7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER------------   73 (154)
Q Consensus         7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------------   73 (154)
                      +-+....++|+++|.+|+|||||+|+|++.+. .......+.+..........   .+.+.|+++...            
T Consensus        17 ~~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~   93 (195)
T d1svia_          17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWG   93 (195)
T ss_dssp             GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHH
T ss_pred             HCCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhh
Confidence            33455567999999999999999999998764 33333333333333333332   234556666211            


Q ss_pred             -ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           74 -FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        74 -~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                       +..........+|++++++|+..+..-.. .+ +.+.+...    +.|+++|+||+|+..+.+
T Consensus        94 ~~~~~~~~~~~~~~~vi~viD~~~~~~~~~-~~-~~~~l~~~----~~piivv~NK~D~~~~~~  151 (195)
T d1svia_          94 RMIETYITTREELKAVVQIVDLRHAPSNDD-VQ-MYEFLKYY----GIPVIVIATKADKIPKGK  151 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HH-HHHHHHHT----TCCEEEEEECGGGSCGGG
T ss_pred             hHHhhhhccccchhhhhhhhhccccccccc-cc-cccccccc----cCcceechhhccccCHHH
Confidence             11122233456799999999876543211 22 44455443    678999999999875544

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=8.1e-17  Score=112.95  Aligned_cols=132  Identities=17%  Similarity=0.153  Sum_probs=88.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC--C---------------CCCCcceee--eEEEEEEECCeEEEEEEEeCCCcc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--E---------------ELSPTIGVD--FKIKHVALGGKKMKLAIWDTAGQE   72 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~--~---------------~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~   72 (154)
                      +..+|+++|+.++|||||+.+++...-  .               ......+.+  .....+..+  ..+++++||||+.
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~--~~~~n~iDtPG~~   82 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--DHRINIIDAPGHV   82 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEET--TEEEEEECCCSSS
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccC--CeEEEEecCCchh
Confidence            456899999999999999999963211  0               001111222  222333333  4568899999999


Q ss_pred             cccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh-hhhhhhhhhhcccc
Q 031704           73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL-FLSGFWHFLLSKFY  151 (154)
Q Consensus        73 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~  151 (154)
                      +|.......++.+|++|+|+|+.+.-....... |...     ...+.|.+++.||.|....+-. ..+++...+...+.
T Consensus        83 dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~-w~~a-----~~~~lP~i~fINKmDr~~ad~~~~l~ei~~~l~~~~v  156 (276)
T d2bv3a2          83 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQA-----EKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPV  156 (276)
T ss_dssp             SCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHH-HHHH-----HTTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEE
T ss_pred             hhHHHHHHHHHhhhheEEeccccCCcchhHHHH-HHHH-----HHcCCCEEEEEecccccccccchhHHHHHHHhCCCeE
Confidence            999999999999999999999998765544433 5433     2348999999999999765543 33555443333333

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.68  E-value=4.4e-16  Score=105.21  Aligned_cols=122  Identities=16%  Similarity=0.115  Sum_probs=77.5

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCCC---CCCC-cce--eeeEEEEEEE------------------------CCeEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTFE---ELSP-TIG--VDFKIKHVAL------------------------GGKKM   61 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~~---~~~~-~~~--~~~~~~~~~~------------------------~~~~~   61 (154)
                      +.++|+++|+.++|||||+++|++....   .... ...  ..........                        .....
T Consensus         7 p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r   86 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLR   86 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEE
T ss_pred             CCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceE
Confidence            3489999999999999999999863221   0000 000  0000001000                        01234


Q ss_pred             EEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        62 ~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      .+.++|+||+.+|.......+..+|++++|+|+.+.-.....++ ....+...   ...|++|+.||+|+.++.+.
T Consensus        87 ~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e-~~~~~~~~---~i~~iIV~vNK~Dl~~~~~~  158 (205)
T d2qn6a3          87 RISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE-HFVALGII---GVKNLIIVQNKVDVVSKEEA  158 (205)
T ss_dssp             EEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHH-HHHHHHHT---TCCCEEEEEECGGGSCHHHH
T ss_pred             EEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHH-HHHHHHHc---CCceeeeccccCCCccchHH
Confidence            68899999999998888888899999999999987532223333 22233322   23478999999999876543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.68  E-value=1.2e-16  Score=111.48  Aligned_cols=126  Identities=18%  Similarity=0.077  Sum_probs=76.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccee--eeEEEEEEECCeEEEEEEEeCCCcccccc-------cccc-
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGV--DFKIKHVALGGKKMKLAIWDTAGQERFRT-------LTSS-   80 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~-   80 (154)
                      ...++|+++|.+|+|||||+|.+++++.....+..+.  .........++  ..+.++||||-.....       .... 
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            4569999999999999999999999876333332222  23334445555  4688899999432111       1111 


Q ss_pred             -cccCccEEEEEEECCCcchHHHHHHHHHHHHhhhc-CCCCCcEEEEEeCCCCCCchhhhh
Q 031704           81 -YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKVCPWRLFL  139 (154)
Q Consensus        81 -~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~Dl~~~~~~~~  139 (154)
                       .....|++++|++++...--..... ..+.+.... ..--.++++|.||+|+..+.....
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~~~-~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~  167 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLDKL-VAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY  167 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHHHH-HHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHHHH-HHHHHHHHcchhhhhCEEEEEECcccCCcCCCcH
Confidence             1235689999998875321111122 222333221 222357899999999986654433

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.65  E-value=3.4e-16  Score=109.41  Aligned_cols=122  Identities=17%  Similarity=0.230  Sum_probs=83.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC--C------------CCC-----CcceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF--E------------ELS-----PTIGVDFKIKHVALGGKKMKLAIWDTAGQER   73 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~--~------------~~~-----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   73 (154)
                      ..+|+++|+.++|||||+.+++...-  .            ++.     ...++......+..++  .+++++||||+.+
T Consensus         2 iRNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~d   79 (267)
T d2dy1a2           2 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGD   79 (267)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGG
T ss_pred             eeEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhh
Confidence            35799999999999999999963211  0            000     0112223333444444  4688999999999


Q ss_pred             ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704           74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF  142 (154)
Q Consensus        74 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~  142 (154)
                      |.......++.+|++|+|+|+.+.-....... |.... .    .+.|.+++.||+|..........++
T Consensus        80 F~~e~~~al~~~D~avlvvda~~Gv~~~t~~~-~~~~~-~----~~~p~~i~iNk~D~~~~~~~~l~~~  142 (267)
T d2dy1a2          80 FVGEIRGALEAADAALVAVSAEAGVQVGTERA-WTVAE-R----LGLPRMVVVTKLDKGGDYYALLEDL  142 (267)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHH-H----TTCCEEEEEECGGGCCCHHHHHHHH
T ss_pred             hhhhhhhhhcccCceEEEeeccCCccchhHHH-HHhhh-h----cccccccccccccccccchhhhhhH
Confidence            99999999999999999999998765544443 54332 2    3789999999999854333333333

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.63  E-value=2.1e-15  Score=102.91  Aligned_cols=124  Identities=19%  Similarity=0.128  Sum_probs=80.6

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC--CC------------------------------CCCcceeeeEEEEEE
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EE------------------------------LSPTIGVDFKIKHVA   55 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~--~~------------------------------~~~~~~~~~~~~~~~   55 (154)
                      ......+||+++|...+|||||+.+|+...-  ..                              .....+.+.......
T Consensus         4 ~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~   83 (222)
T d1zunb3           4 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY   83 (222)
T ss_dssp             TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred             cccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEE
Confidence            3456789999999999999999999963211  00                              000111222222222


Q ss_pred             ECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704           56 LGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW  135 (154)
Q Consensus        56 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~  135 (154)
                      +.....++.++|+||+..|..........+|++++|+|+...-.-... + ....+...   .-..++++.||+|+.+..
T Consensus        84 ~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~-e-~~~~~~~~---gv~~iiv~vNK~D~~~~~  158 (222)
T d1zunb3          84 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR-R-HSYIASLL---GIKHIVVAINKMDLNGFD  158 (222)
T ss_dssp             EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH-H-HHHHHHHT---TCCEEEEEEECTTTTTSC
T ss_pred             EeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchH-H-HHHHHHHc---CCCEEEEEEEcccccccc
Confidence            222335688899999999998888889999999999999875443322 2 22222222   123589999999998655


Q ss_pred             h
Q 031704          136 R  136 (154)
Q Consensus       136 ~  136 (154)
                      +
T Consensus       159 ~  159 (222)
T d1zunb3         159 E  159 (222)
T ss_dssp             H
T ss_pred             c
Confidence            4

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=6.9e-16  Score=111.20  Aligned_cols=116  Identities=20%  Similarity=0.262  Sum_probs=80.4

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCC---------------CCCCCcceeeeEEEEEEE----------------CCe
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF---------------EELSPTIGVDFKIKHVAL----------------GGK   59 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~----------------~~~   59 (154)
                      +...+|+++|+.++|||||+.+|+...-               .......+.+.......+                +++
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~   94 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   94 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence            3455799999999999999999973110               000111122221111111                345


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704           60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV  132 (154)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~  132 (154)
                      .+.++++||||+.+|.......++-+|++++|+|+.+.-....... |.....     .+.|++++.||+|..
T Consensus        95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~-~~~a~~-----~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV-LRQALG-----ERIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHH-HHHHHH-----TTCEEEEEEECHHHH
T ss_pred             ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHH-HHHHHH-----cCCCeEEEEECcccc
Confidence            7789999999999999999999999999999999998766554443 444332     368999999999974

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=6.9e-15  Score=96.77  Aligned_cols=135  Identities=20%  Similarity=0.121  Sum_probs=77.6

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc---------cccccc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER---------FRTLTS   79 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~   79 (154)
                      .+.-.|+++|.+|+|||||+|+|++.+..  ...+.............+..  .+..+|++|...         ......
T Consensus         3 ~~~~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (179)
T d1egaa1           3 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAY--QAIYVDTPGLHMEEKRAINRLMNKAAS   80 (179)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTE--EEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccccEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCc--eeEeecCCCceecchhhhhhhhhhccc
Confidence            35567999999999999999999988762  22222222222223333332  445678887321         112223


Q ss_pred             ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh---h-hhhhhhhccccccC
Q 031704           80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL---S-GFWHFLLSKFYCSS  154 (154)
Q Consensus        80 ~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~---~-~~~~~~~~~~~~~S  154 (154)
                      .....+++++++.|..+.....  .. +...+.    ....|.++|+||+|+........   . ....+...+++|+|
T Consensus        81 ~~~~~~~~~l~~~d~~~~~~~~--~~-~~~~l~----~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vS  152 (179)
T d1egaa1          81 SSIGDVELVIFVVEGTRWTPDD--EM-VLNKLR----EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPIS  152 (179)
T ss_dssp             SCCCCEEEEEEEEETTCCCHHH--HH-HHHHHH----SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECC
T ss_pred             cchhhcceeEEEEecCccchhH--HH-HHHHhh----hccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEe
Confidence            3345678888999877644322  22 222332    34567899999999876653311   1 12223445667776

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=3.4e-16  Score=108.01  Aligned_cols=121  Identities=16%  Similarity=0.091  Sum_probs=79.5

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCC--CC----------------CC------------CCcceeeeEEEEEEECCeEE
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDT--FE----------------EL------------SPTIGVDFKIKHVALGGKKM   61 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~--~~----------------~~------------~~~~~~~~~~~~~~~~~~~~   61 (154)
                      ..++|+++|+..+|||||+.+|+...  ..                ..            ....|++.......+.-...
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~   84 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   84 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCE
Confidence            35899999999999999999996310  00                00            01123333333333333446


Q ss_pred             EEEEEeCCCcccccccccccccCccEEEEEEECCCcchHH------HHHHHHHHHHhhhcCCCCC-cEEEEEeCCCCCCc
Q 031704           62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFT------NLADIWAKEIDLYSTNQDC-IKLLVGNKVDKVCP  134 (154)
Q Consensus        62 ~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~~~-~~ivv~nK~Dl~~~  134 (154)
                      ++++.|+||+.+|...+...+..+|++|+|+|+.....-.      .... ........    ++ ++|++.||.|+.+.
T Consensus        85 ~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~e-h~~~~~~~----gv~~iiv~iNKmD~~~~  159 (239)
T d1f60a3          85 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAFTL----GVRQLIVAVNKMDSVKW  159 (239)
T ss_dssp             EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHHHT----TCCEEEEEEECGGGGTT
T ss_pred             EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHH-HHHHHHHc----CCCeEEEEEECCCCCCC
Confidence            8899999999999999888999999999999998643210      1222 11222222    44 58899999999765


Q ss_pred             hhh
Q 031704          135 WRL  137 (154)
Q Consensus       135 ~~~  137 (154)
                      .+.
T Consensus       160 d~~  162 (239)
T d1f60a3         160 DES  162 (239)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            543

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=6.6e-15  Score=108.50  Aligned_cols=111  Identities=18%  Similarity=0.229  Sum_probs=66.6

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCC---CcceeeeEEEEEEECCeEEEEEEEeCCCccccccc-----ccccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELS---PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL-----TSSYY   82 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----~~~~~   82 (154)
                      ..++|+++|.+|+|||||+|+|++... ....   ...+.|.....+...+ ...+.+|||||.......     ....+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccC-CCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            468999999999999999999998654 1111   1122222223333222 224779999995432221     22235


Q ss_pred             cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCC
Q 031704           83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK  131 (154)
Q Consensus        83 ~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl  131 (154)
                      ..+|.++++.|..-..  .+ .. +.+.+...    +.|+++|.||+|.
T Consensus       134 ~~~d~~l~~~~~~~~~--~d-~~-l~~~l~~~----~k~~~~V~nK~D~  174 (400)
T d1tq4a_         134 YEYDFFIIISATRFKK--ND-ID-IAKAISMM----KKEFYFVRTKVDS  174 (400)
T ss_dssp             GGCSEEEEEESSCCCH--HH-HH-HHHHHHHT----TCEEEEEECCHHH
T ss_pred             hcceEEEEecCCCCCH--HH-HH-HHHHHHHc----CCCEEEEEeCccc
Confidence            6788888887643221  11 12 33444443    7899999999996

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.53  E-value=1.4e-15  Score=104.13  Aligned_cols=117  Identities=20%  Similarity=0.160  Sum_probs=74.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC------------------------------CCCCCcceeeeEEEEEEECCeEEE
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF------------------------------EELSPTIGVDFKIKHVALGGKKMK   62 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~   62 (154)
                      .++|+++|..++|||||+.+|+...-                              .......+.+.......+......
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~   82 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   82 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence            58999999999999999999863110                              000111223333333333344567


Q ss_pred             EEEEeCCCcccccccccccccCccEEEEEEECCCcchHH------HHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           63 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFT------NLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        63 ~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      ++++||||+..|.......++.+|++|+|+|+.+.....      ...+ .......   ....++|++.||.|+..
T Consensus        83 i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e-~l~~~~~---~~~~~iIv~iNK~D~~~  155 (224)
T d1jnya3          83 FTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTRE-HIILAKT---MGLDQLIVAVNKMDLTE  155 (224)
T ss_dssp             EEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHH-HHHHHHH---TTCTTCEEEEECGGGSS
T ss_pred             eEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHH-HHHHHHH---hCCCceEEEEEcccCCC
Confidence            999999999999999999999999999999998753211      1111 1111111   12346889999999864

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=1.4e-13  Score=90.66  Aligned_cols=126  Identities=14%  Similarity=0.059  Sum_probs=62.4

Q ss_pred             ccCCCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcce-eeeEEEEEEECCeEEEEEEEeCCCccccccc-------
Q 031704            6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIG-VDFKIKHVALGGKKMKLAIWDTAGQERFRTL-------   77 (154)
Q Consensus         6 ~~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------   77 (154)
                      .+.+.+..++|+++|.+|+|||||+|++++.+........+ ................+...+..+.......       
T Consensus         9 ~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (188)
T d1puia_           9 RHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRA   88 (188)
T ss_dssp             GGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHH
T ss_pred             hHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhh
Confidence            34567788999999999999999999999887632222222 1122222222222222222222221111110       


Q ss_pred             ---ccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           78 ---TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        78 ---~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                         ........+.++.+.+......... .. +...+..    ...++++++||+|+.+....
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~----~~~~~~~v~~k~D~~~~~~~  145 (188)
T d1puia_          89 LGEYLEKRQSLQGLVVLMDIRHPLKDLD-QQ-MIEWAVD----SNIAVLVLLTKADKLASGAR  145 (188)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHH-HH-HHHHHHH----TTCCEEEEEECGGGSCHHHH
T ss_pred             hhhhhhhhhheeEEEEeecccccchhHH-HH-HHHHhhh----ccccccchhhhhhccCHHHH
Confidence               1111223456666666655433222 22 3333333    36678999999999876544

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=2.2e-13  Score=94.09  Aligned_cols=120  Identities=17%  Similarity=0.090  Sum_probs=63.6

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCC--C----------------------------CCCCcceeeeEEEEEEECCe
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF--E----------------------------ELSPTIGVDFKIKHVALGGK   59 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~   59 (154)
                      ....++|+++|+..+|||||+.+|+...-  .                            ......+.+...........
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~  100 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  100 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccc
Confidence            34578999999999999999999953110  0                            00011111111111122223


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHH------HHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704           60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFT------NLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC  133 (154)
Q Consensus        60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~  133 (154)
                      ..++.+.|+||+..|..........+|++++|+|+.+...-.      ...+ ....+...   .-.+++++.||.|+..
T Consensus       101 ~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e-~l~l~~~~---~i~~iiv~iNKmD~~~  176 (245)
T d1r5ba3         101 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTRE-HAVLARTQ---GINHLVVVINKMDEPS  176 (245)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHH-HHHHHHHT---TCSSEEEEEECTTSTT
T ss_pred             cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHH-HHHHHHHc---CCCeEEEEEEcCCCCc
Confidence            356889999999999999988899999999999998742110      1222 11222222   2235889999999964

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=9e-12  Score=88.06  Aligned_cols=120  Identities=19%  Similarity=0.216  Sum_probs=71.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC-CC-CCCcceeeeEEEEEEEC----------C---------------------
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EE-LSPTIGVDFKIKHVALG----------G---------------------   58 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~-~~~~~~~~~~~~~~~~~----------~---------------------   58 (154)
                      ..++|+|+|..++|||||+|++++.++ +. ..+++..........-.          +                     
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            456899999999999999999999886 32 22333221111111100          0                     


Q ss_pred             ------------------eEEEEEEEeCCCcccc-------------cccccccccCcc-EEEEEEECCCcchHHHHHHH
Q 031704           59 ------------------KKMKLAIWDTAGQERF-------------RTLTSSYYRGAQ-GIIMVYDVTRRDTFTNLADI  106 (154)
Q Consensus        59 ------------------~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~-~~v~v~d~~~~~s~~~~~~~  106 (154)
                                        ....+.++|+||....             ..+...++...+ +++++.+++...+...... 
T Consensus       105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~-  183 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK-  183 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH-
T ss_pred             CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHH-
Confidence                              0013789999994321             123344555665 5666777665554444333 


Q ss_pred             HHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704          107 WAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus       107 ~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      +.+.+    .....++++|.||+|+.++..
T Consensus       184 ~~~~~----~~~~~r~i~Vltk~D~~~~~~  209 (299)
T d2akab1         184 IAKEV----DPQGQRTIGVITKLDLMDEGT  209 (299)
T ss_dssp             HHHHH----CTTCSSEEEEEECGGGSCTTC
T ss_pred             HHHHh----CcCCCceeeEEeccccccchh
Confidence            33333    334567999999999976543

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.24  E-value=9.4e-12  Score=88.80  Aligned_cols=83  Identities=22%  Similarity=0.197  Sum_probs=47.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEE----------------------ECCeEEEEEEEeCCC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVA----------------------LGGKKMKLAIWDTAG   70 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~i~D~~g   70 (154)
                      +||+++|.|+||||||+|++++.+. ...+|.++.+.......                      .......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            4899999999999999999998776 45556555433322211                      012335799999999


Q ss_pred             cc-------cccccccccccCccEEEEEEECCC
Q 031704           71 QE-------RFRTLTSSYYRGAQGIIMVYDVTR   96 (154)
Q Consensus        71 ~~-------~~~~~~~~~~~~~~~~v~v~d~~~   96 (154)
                      --       .........++++|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            32       123334455789999999999864

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.21  E-value=5.2e-12  Score=88.65  Aligned_cols=82  Identities=22%  Similarity=0.192  Sum_probs=58.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCe-------------E--EEEEEEeCCCcc-----
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK-------------K--MKLAIWDTAGQE-----   72 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-------------~--~~~~i~D~~g~~-----   72 (154)
                      +||.++|.|+||||||++++.+.+. ...+|.++.+.....+.+.+.             .  ..+.+.|+||--     
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~~   82 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCccc
Confidence            6999999999999999999998876 556677666655555655432             1  258899999932     


Q ss_pred             --cccccccccccCccEEEEEEECC
Q 031704           73 --RFRTLTSSYYRGAQGIIMVYDVT   95 (154)
Q Consensus        73 --~~~~~~~~~~~~~~~~v~v~d~~   95 (154)
                        .........++++|++++|+|+.
T Consensus        83 g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          83 GEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             CCCccHHHHHHHHhccceEEEeecc
Confidence              22334566688999999999874

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.18  E-value=1.7e-11  Score=86.99  Aligned_cols=26  Identities=27%  Similarity=0.557  Sum_probs=24.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF   38 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~   38 (154)
                      .++|+|+|..++|||||+|++++.++
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCC
Confidence            46899999999999999999999876

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.15  E-value=2.8e-11  Score=85.59  Aligned_cols=84  Identities=24%  Similarity=0.265  Sum_probs=62.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCe---------------EEEEEEEeCCCccc--
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGK---------------KMKLAIWDTAGQER--   73 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~--   73 (154)
                      .+||.++|.|+||||||+|++++...  ...+|.++++.....+.+.+.               ...+.+.|+||...  
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA   89 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA   89 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccccc
Confidence            38999999999999999999997653  466777776666666665432               24688899998321  


Q ss_pred             -----ccccccccccCccEEEEEEECCC
Q 031704           74 -----FRTLTSSYYRGAQGIIMVYDVTR   96 (154)
Q Consensus        74 -----~~~~~~~~~~~~~~~v~v~d~~~   96 (154)
                           ........++++|++++|+|+.+
T Consensus        90 ~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          90 STGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccHHHHHHHhhccceeEEEEeccC
Confidence                 22345566899999999999865

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.94  E-value=4.6e-10  Score=78.32  Aligned_cols=59  Identities=27%  Similarity=0.392  Sum_probs=38.9

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ   71 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   71 (154)
                      ....++++|+|.|++|||||+|++.+.+.....+..|.|.....+..+.   .+.++||||-
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEECCC---CeEEecCCCc
Confidence            4467999999999999999999999988877777777776655555543   3788999994

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.79  E-value=9.1e-10  Score=74.89  Aligned_cols=73  Identities=16%  Similarity=0.039  Sum_probs=41.5

Q ss_pred             EEEEEeCCCcccccccccc---c--ccCccEEEEEEECCCcchHHHHHHHH--HHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           62 KLAIWDTAGQERFRTLTSS---Y--YRGAQGIIMVYDVTRRDTFTNLADIW--AKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        62 ~~~i~D~~g~~~~~~~~~~---~--~~~~~~~v~v~d~~~~~s~~~~~~~~--~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      .+.+.|+||+..+......   .  ....++++++.|+.....-......+  .....   .....|.++|.||+|+..+
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~---~~~~~~~ivvinK~D~~~~  172 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLID---LRLGATTIPALNKVDLLSE  172 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHH---HHHTSCEEEEECCGGGCCH
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHH---HHhCCCceeeeeccccccH
Confidence            4778899998654332211   1  12356888999876433222221111  11111   1236789999999999876


Q ss_pred             hhh
Q 031704          135 WRL  137 (154)
Q Consensus       135 ~~~  137 (154)
                      .+.
T Consensus       173 ~~~  175 (244)
T d1yrba1         173 EEK  175 (244)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=5.8e-08  Score=69.07  Aligned_cols=24  Identities=38%  Similarity=0.574  Sum_probs=22.0

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHh
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~   34 (154)
                      .+.++|.|.|+||+|||||+++|.
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~   75 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFG   75 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHH
Confidence            457899999999999999999996

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.42  E-value=7.6e-08  Score=64.77  Aligned_cols=55  Identities=24%  Similarity=0.166  Sum_probs=34.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCC---CC----cceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFEEL---SP----TIGVDFKIKHVALGGKKMKLAIWDTAGQE   72 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   72 (154)
                      ..+++|++|+|||||+|+|.++.....   ..    ..+.|.....+.+++..   .++||||..
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg---~iiDTPG~r  158 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFA  158 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSST
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCc---EEEeCCccc
Confidence            568999999999999999987644211   11    12233444455554332   577999943

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.39  E-value=1.9e-07  Score=66.29  Aligned_cols=25  Identities=32%  Similarity=0.410  Sum_probs=22.3

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ...++|.+.|+||+|||||++++..
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHH
Confidence            3568999999999999999999874

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.23  E-value=1.8e-07  Score=63.15  Aligned_cols=56  Identities=27%  Similarity=0.355  Sum_probs=31.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC---CCCC----cceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTFE---ELSP----TIGVDFKIKHVALGGKKMKLAIWDTAGQERF   74 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   74 (154)
                      ..+++|++|+|||||+|+|.+....   ..+.    ..+.|.....+..++.    .++||||...+
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~gg----~iiDTPG~r~~  161 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGG----LVADTPGFSSL  161 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTE----EEESSCSCSSC
T ss_pred             eEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCCC----EEEECCccccc
Confidence            4578999999999999999976431   1111    1112222233344542    36799995443

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=1.2e-05  Score=53.81  Aligned_cols=25  Identities=36%  Similarity=0.458  Sum_probs=20.9

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcCC
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .+=.++-|--|||||||+++++...
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhcC
Confidence            3456788999999999999998753

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.03  E-value=1.2e-06  Score=56.31  Aligned_cols=23  Identities=35%  Similarity=0.736  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      +||+++|++|+|||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            48999999999999999998863

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.87  E-value=3e-06  Score=54.29  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      -+|++.|++|+|||||+++|..
T Consensus         8 K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.83  E-value=3.2e-06  Score=53.66  Aligned_cols=22  Identities=45%  Similarity=0.614  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ++|+++|++||||||+.+.|..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999854

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.78  E-value=5.7e-06  Score=52.62  Aligned_cols=24  Identities=21%  Similarity=0.429  Sum_probs=21.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      +.++|++.|++||||||+.+.|..
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHH
Confidence            457999999999999999999864

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=8.4e-06  Score=51.55  Aligned_cols=21  Identities=38%  Similarity=0.439  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      -+.|+|.+|||||||++++..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            488999999999999999974

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.71  E-value=9.4e-06  Score=52.91  Aligned_cols=26  Identities=27%  Similarity=0.420  Sum_probs=22.7

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..+.+||+++|+|||||||+...|..
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHH
Confidence            34668999999999999999999864

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.70  E-value=8.7e-06  Score=52.29  Aligned_cols=21  Identities=33%  Similarity=0.518  Sum_probs=19.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHh
Q 031704           14 FKLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~   34 (154)
                      +||+++|+|||||||+...|.
T Consensus         1 m~I~i~G~pGSGKsT~a~~La   21 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIV   21 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999874

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=2.2e-05  Score=54.22  Aligned_cols=60  Identities=22%  Similarity=0.162  Sum_probs=39.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcCCC--CCC----CCcceeeeEEEEEEE-CCeEEEEEEEeCCCccc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--EEL----SPTIGVDFKIKHVAL-GGKKMKLAIWDTAGQER   73 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~~~--~~~----~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~   73 (154)
                      +..=|.|+|+.++|||+|+|.+++...  ...    ..|.|+  +....++ ++....+.++||.|...
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Gi--w~~~~~~~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGI--WMWCVPHPKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSE--EEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCce--EEEEeeccCCCCceEEEEecccccc
Confidence            456788999999999999999998764  211    233343  3222222 33455688899999543

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.66  E-value=7.7e-06  Score=53.10  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=20.3

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      +++|+++|++||||||+...|..
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998753

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.65  E-value=1.2e-05  Score=52.14  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=20.1

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHh
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~   34 (154)
                      .+||+++|+|||||||+...|.
T Consensus         3 ~~riil~G~pGSGKsT~a~~La   24 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLA   24 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHH
Confidence            4799999999999999999886

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.65  E-value=1.4e-05  Score=49.71  Aligned_cols=21  Identities=43%  Similarity=0.596  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (154)
                      |++.|++||||||+++++...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            778999999999999998653

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.64  E-value=1.3e-05  Score=51.75  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      +||+++|+|||||||+...|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998764

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.61  E-value=1.5e-05  Score=51.31  Aligned_cols=22  Identities=32%  Similarity=0.675  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      +||+++|+|||||||+...|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999853

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=1.5e-05  Score=51.19  Aligned_cols=21  Identities=24%  Similarity=0.415  Sum_probs=19.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHh
Q 031704           14 FKLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~   34 (154)
                      +||+++|+|||||||....|.
T Consensus         1 m~I~i~G~pGSGKsT~~~~La   21 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIM   21 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            489999999999999998885

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.60  E-value=2.1e-05  Score=51.05  Aligned_cols=24  Identities=21%  Similarity=0.307  Sum_probs=20.4

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      +..-|+++|+|||||||+.++|..
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999998854

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.54  E-value=2.1e-05  Score=50.59  Aligned_cols=22  Identities=32%  Similarity=0.607  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      +||+++|++||||||+...|..
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998854

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.54  E-value=2.2e-05  Score=49.51  Aligned_cols=21  Identities=33%  Similarity=0.525  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      -|++.|++||||||++++|..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999999874

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.51  E-value=4e-05  Score=52.73  Aligned_cols=52  Identities=13%  Similarity=0.003  Sum_probs=36.7

Q ss_pred             ccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        78 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      ....+..+|++++|.|+.++.+..+-      .+....  .+.|.++|+||+||.+....
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~~------~l~~~~--~~Kp~IlVlNK~DLv~~~~~   60 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRNP------MIEDIL--KNKPRIMLLNKADKADAAVT   60 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSCH------HHHHHC--SSSCEEEEEECGGGSCHHHH
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCCH------HHHHHH--cCCCeEEEEECccCCchHHH
Confidence            34457889999999999887665432      122221  25689999999999876544

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.51  E-value=1.7e-05  Score=50.35  Aligned_cols=21  Identities=38%  Similarity=0.458  Sum_probs=18.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHh
Q 031704           14 FKLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~   34 (154)
                      +||+++|++||||||+.+.+.
T Consensus         2 p~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            479999999999999998874

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=2.3e-05  Score=48.86  Aligned_cols=21  Identities=33%  Similarity=0.597  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      +|+++|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999998864

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.49  E-value=2.9e-05  Score=49.17  Aligned_cols=20  Identities=25%  Similarity=0.446  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 031704           16 LLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~   35 (154)
                      |.|+|.+|||||||+++++.
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            35999999999999999864

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=3.8e-05  Score=49.78  Aligned_cols=22  Identities=23%  Similarity=0.484  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      +.|+++|+|||||||...+|..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998853

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=4.3e-05  Score=48.97  Aligned_cols=24  Identities=25%  Similarity=0.292  Sum_probs=20.5

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ...=|+++|.+||||||++.++..
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345788899999999999999864

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=4.3e-05  Score=51.65  Aligned_cols=22  Identities=36%  Similarity=0.395  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      +++++|++|||||||++.+.+-
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999999874

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=3.9e-05  Score=48.78  Aligned_cols=21  Identities=38%  Similarity=0.672  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      +|++.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999998864

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.38  E-value=6.7e-05  Score=47.48  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=19.8

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHh
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~   34 (154)
                      ...-|.++|.+||||||+.+.|.
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34678899999999999998875

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.36  E-value=5.4e-05  Score=51.55  Aligned_cols=22  Identities=41%  Similarity=0.495  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      +++++|++|||||||++.+.+-
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            6899999999999999998763

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.36  E-value=4.4e-05  Score=48.26  Aligned_cols=20  Identities=40%  Similarity=0.609  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 031704           15 KLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~   34 (154)
                      +|+++|++||||||+...|.
T Consensus         2 ~I~liG~~GsGKsTi~k~La   21 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALA   21 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999874

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.36  E-value=5.3e-05  Score=49.46  Aligned_cols=21  Identities=19%  Similarity=0.355  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      =|+++|.||+||||+.++|..
T Consensus         4 li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999999874

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=5.3e-05  Score=48.99  Aligned_cols=21  Identities=43%  Similarity=0.705  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (154)
                      |+++||+||||+||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999999754

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.33  E-value=6.3e-05  Score=50.86  Aligned_cols=22  Identities=32%  Similarity=0.371  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .++++|+.|||||||++.+.+-
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            7899999999999999998763

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.32  E-value=8.5e-05  Score=48.19  Aligned_cols=23  Identities=22%  Similarity=0.429  Sum_probs=20.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..-|+++|+|||||||+...|..
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999864

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.31  E-value=7.1e-05  Score=47.30  Aligned_cols=21  Identities=43%  Similarity=0.589  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (154)
                      |++.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678899999999999988653

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.30  E-value=6.5e-05  Score=47.83  Aligned_cols=19  Identities=26%  Similarity=0.331  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 031704           16 LLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~   34 (154)
                      |++.|++||||||+++.|.
T Consensus         4 I~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6788999999999999874

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=6.6e-05  Score=47.34  Aligned_cols=21  Identities=33%  Similarity=0.469  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      =++++|++||||||+.+.|..
T Consensus         8 iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            356789999999999999864

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=7.3e-05  Score=50.83  Aligned_cols=22  Identities=32%  Similarity=0.395  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .++++|+.|||||||++.+.+-
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            6899999999999999998863

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.28  E-value=6.5e-05  Score=48.05  Aligned_cols=20  Identities=45%  Similarity=0.591  Sum_probs=16.9

Q ss_pred             EEE-EEcCCCCCHHHHHHHHh
Q 031704           15 KLL-LIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        15 ki~-v~G~~~~GKstli~~l~   34 (154)
                      ||+ +.|.+||||||+++.|.
T Consensus         2 kiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            565 56999999999999884

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.27  E-value=7.3e-05  Score=48.06  Aligned_cols=21  Identities=38%  Similarity=0.564  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (154)
                      |+++||+||||||+++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678899999999999998754

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=7.7e-05  Score=50.07  Aligned_cols=22  Identities=41%  Similarity=0.561  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -++++|+.|||||||++.+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            4789999999999999988753

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.26  E-value=7.8e-05  Score=48.95  Aligned_cols=23  Identities=30%  Similarity=0.501  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|+.|||||||++.+.+--
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            46799999999999999998743

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=8.4e-05  Score=51.34  Aligned_cols=22  Identities=32%  Similarity=0.638  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .++++|+.|||||||++.+.+-
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            6899999999999999999874

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.24  E-value=8.3e-05  Score=49.85  Aligned_cols=23  Identities=35%  Similarity=0.405  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCcchhhHhccCCC
Confidence            47889999999999999877643

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=9.9e-05  Score=47.48  Aligned_cols=21  Identities=29%  Similarity=0.637  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (154)
                      |+++||+|+||+||+++|+..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999854

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.21  E-value=9.8e-05  Score=49.74  Aligned_cols=23  Identities=39%  Similarity=0.505  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      -++++|+.|||||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47899999999999999988743

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=0.00011  Score=47.75  Aligned_cols=20  Identities=50%  Similarity=0.685  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 031704           16 LLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~   35 (154)
                      |+++||+||||||+.++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999864

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.19  E-value=0.00011  Score=49.58  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      -++++|+.|||||||++.+.+-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            35789999999999999998743

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.18  E-value=0.00014  Score=49.15  Aligned_cols=23  Identities=30%  Similarity=0.460  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      --|++.|+||+||||++..+.+.
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999998654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.16  E-value=0.00011  Score=46.25  Aligned_cols=21  Identities=33%  Similarity=0.491  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (154)
                      |++.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            455599999999999998753

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00012  Score=48.22  Aligned_cols=21  Identities=29%  Similarity=0.510  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (154)
                      |+++||+||||+||+++|+..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678899999999999999754

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.15  E-value=0.00012  Score=46.47  Aligned_cols=20  Identities=20%  Similarity=0.501  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 031704           15 KLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~   34 (154)
                      .|+++|++||||||+.+.|.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHH
Confidence            37899999999999999884

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.15  E-value=0.00011  Score=47.55  Aligned_cols=21  Identities=24%  Similarity=0.452  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      -|+++|+|||||||+..+|..
T Consensus        10 iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.13  E-value=8.3e-05  Score=50.62  Aligned_cols=21  Identities=38%  Similarity=0.509  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      +++++|++|||||||++.+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            789999999999999998876

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.11  E-value=0.00014  Score=49.04  Aligned_cols=23  Identities=35%  Similarity=0.502  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      -+.++|+.|||||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            57899999999999999988754

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.10  E-value=8.4e-05  Score=49.75  Aligned_cols=23  Identities=22%  Similarity=0.431  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      -++++|+.|||||||++.+.+-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            37899999999999999998754

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00014  Score=49.02  Aligned_cols=23  Identities=39%  Similarity=0.408  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      -++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCc
Confidence            46889999999999999998744

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.07  E-value=0.00015  Score=48.91  Aligned_cols=23  Identities=35%  Similarity=0.491  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      -++++|+.|||||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            36789999999999999998754

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.06  E-value=0.00012  Score=48.92  Aligned_cols=24  Identities=42%  Similarity=0.600  Sum_probs=20.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ...+++.||||+||||+++.+...
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhc
Confidence            347999999999999999988753

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00011  Score=49.28  Aligned_cols=22  Identities=45%  Similarity=0.626  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -++++|+.|||||||++.+.+-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4788999999999999999873

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.03  E-value=0.00016  Score=48.35  Aligned_cols=24  Identities=42%  Similarity=0.642  Sum_probs=20.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ...+++.||||+||||+++.+.+.
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999988753

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.02  E-value=0.00026  Score=45.42  Aligned_cols=23  Identities=30%  Similarity=0.187  Sum_probs=20.0

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHh
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~   34 (154)
                      .++=|+|-|++|||||||.++|.
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~   43 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLS   43 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            34668899999999999999985

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.99  E-value=0.0002  Score=48.17  Aligned_cols=23  Identities=35%  Similarity=0.420  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      -+.++|+.|||||||++.+.+-.
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            46789999999999999998754

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.98  E-value=0.0011  Score=44.18  Aligned_cols=51  Identities=14%  Similarity=0.152  Sum_probs=34.3

Q ss_pred             ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR  136 (154)
Q Consensus        82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~  136 (154)
                      .-+.|.+++|.++.+++.-....+.++-..    ...+++.+||+||+||.++..
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a----~~~~i~pvIvlnK~DL~~~~~   58 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLV----EANDIQPIICITKMDLIEDQD   58 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHHHHH----HTTTCEEEEEEECGGGCCCHH
T ss_pred             ccccCEEEEEEECCCCCCCHHHHHHHHHHH----HHcCCCEEEEEecccccccHH
Confidence            456899999999887654333333133232    345888899999999986543

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00011  Score=47.26  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=19.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..-|.++|.+||||||+.+.|..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999999853

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.95  E-value=0.00023  Score=48.48  Aligned_cols=23  Identities=39%  Similarity=0.489  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      -++++|+.|||||||++.+.+-.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            57899999999999999998743

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.95  E-value=0.0002  Score=47.09  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ++|+|-||+||||||....|..
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6788999999999999998853

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.93  E-value=0.00021  Score=50.27  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .+|+|.|++|+||||+++.++..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            36999999999999999999864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.0003  Score=45.82  Aligned_cols=22  Identities=32%  Similarity=0.634  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      -+++++|++|+|||++++.+..
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHH
Confidence            3789999999999999988764

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.91  E-value=0.00026  Score=48.11  Aligned_cols=22  Identities=45%  Similarity=0.566  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~   37 (154)
                      +.++|+.|||||||++.+.+-.
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEECCCCCcHHHHHHHHHCCC
Confidence            6889999999999999998753

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.90  E-value=0.00089  Score=44.49  Aligned_cols=52  Identities=21%  Similarity=0.183  Sum_probs=35.7

Q ss_pred             ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704           82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL  137 (154)
Q Consensus        82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~  137 (154)
                      .-+.|.+++|.++.+++.-....+.|+-...    ..+++.+||+||+||.++...
T Consensus         8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~----~~~i~pvIvlnK~DL~~~~~~   59 (225)
T d1u0la2           8 VANVDQVILVVTVKMPETSTYIIDKFLVLAE----KNELETVMVINKMDLYDEDDL   59 (225)
T ss_dssp             EESCCEEEEEECSSTTCCCHHHHHHHHHHHH----HTTCEEEEEECCGGGCCHHHH
T ss_pred             cccCCEEEEEEeCCCCCCCHHHHHHHHHHHH----HcCCCEEEEEeCcccCCHHHH
Confidence            4567999999998876543333332333333    348889999999999876543

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.87  E-value=0.00012  Score=49.29  Aligned_cols=23  Identities=26%  Similarity=0.483  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .++++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            57899999999999999998754

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.00036  Score=47.69  Aligned_cols=22  Identities=36%  Similarity=0.582  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      -+++++|++|+|||++++.+..
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHH
Confidence            3889999999999999998764

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.79  E-value=0.00056  Score=46.09  Aligned_cols=23  Identities=30%  Similarity=0.445  Sum_probs=20.5

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ...|++.|++|+|||++++.+..
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhh
Confidence            45799999999999999999875

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.79  E-value=0.0004  Score=45.99  Aligned_cols=22  Identities=41%  Similarity=0.625  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..+++.|++|+||||+++.+..
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4699999999999999998875

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.79  E-value=0.00048  Score=44.38  Aligned_cols=26  Identities=35%  Similarity=0.488  Sum_probs=22.2

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      +.+.+=|+|-|..||||||+++.|..
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHH
Confidence            34557899999999999999998864

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.77  E-value=0.00042  Score=46.80  Aligned_cols=22  Identities=32%  Similarity=0.300  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -+.+.|+||+|||++++.+...
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            3455699999999999998754

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.72  E-value=0.00048  Score=46.23  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -.+++.|++|+|||++++.+...
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988753

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.72  E-value=0.00043  Score=46.55  Aligned_cols=21  Identities=24%  Similarity=0.270  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      .+++.|++|+|||||+.++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            578899999999999998864

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00056  Score=44.74  Aligned_cols=21  Identities=24%  Similarity=0.393  Sum_probs=18.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHh
Q 031704           14 FKLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~   34 (154)
                      +=|++-|++||||||+.+.|.
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~   23 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIV   23 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            568899999999999999874

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.71  E-value=0.00049  Score=46.05  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=21.0

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ...+++.||+|+||||++..+...
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999998864

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.69  E-value=0.00045  Score=48.11  Aligned_cols=23  Identities=30%  Similarity=0.546  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -.++++||||+|||.|.+.+...
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            46899999999999999998753

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.00056  Score=44.69  Aligned_cols=21  Identities=33%  Similarity=0.480  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      =|+|.||+||||+|....|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467779999999999998753

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.51  E-value=0.00057  Score=45.08  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=19.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      .++++.|++|+||||+++.+..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHH
Confidence            4689999999999999988753

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.48  E-value=0.0011  Score=43.67  Aligned_cols=24  Identities=25%  Similarity=0.456  Sum_probs=19.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHh
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~   34 (154)
                      ....-|+++|++|+||||.+-.|.
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            344678999999999999876653

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.47  E-value=0.00081  Score=45.35  Aligned_cols=21  Identities=38%  Similarity=0.665  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      .+++.|++|+|||++++.+..
T Consensus        44 giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHH
Confidence            589999999999999999985

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.43  E-value=0.00065  Score=44.78  Aligned_cols=23  Identities=26%  Similarity=0.599  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .++++.|++|+||||++..+...
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHH
Confidence            36899999999999999998753

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.42  E-value=0.00088  Score=44.24  Aligned_cols=23  Identities=30%  Similarity=0.645  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .++++.|++|+||||+++.+...
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            35899999999999999988753

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.42  E-value=0.00059  Score=45.57  Aligned_cols=23  Identities=35%  Similarity=0.515  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .++++.|++|+||||++..+...
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999988653

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.36  E-value=0.00082  Score=49.15  Aligned_cols=21  Identities=33%  Similarity=0.713  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      +|+++||+|+|||-|.++|..
T Consensus        51 NILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999999853

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.35  E-value=0.001  Score=43.05  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998763

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.001  Score=45.04  Aligned_cols=22  Identities=27%  Similarity=0.516  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      -.+++.||+|+|||++++.+..
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHH
Confidence            3589999999999999999874

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.34  E-value=0.0011  Score=44.94  Aligned_cols=23  Identities=26%  Similarity=0.486  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -.+++.||+|+|||++++.+...
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHHH
Confidence            35999999999999999988763

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.29  E-value=0.0015  Score=42.80  Aligned_cols=25  Identities=32%  Similarity=0.369  Sum_probs=21.2

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      .+..=|.+.|.+||||||+.+.|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999998864

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.26  E-value=0.0026  Score=39.83  Aligned_cols=33  Identities=33%  Similarity=0.359  Sum_probs=24.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCcce
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF---EELSPTIG   46 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~---~~~~~~~~   46 (154)
                      .-|++-|+=|||||||++.+...--   ...+||..
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~   69 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYT   69 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTT
T ss_pred             eEEEEecCCCccHHHHHHHHHhhcccccccCCCceE
Confidence            4578899999999999999875432   34455543

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.25  E-value=0.0017  Score=42.69  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=14.2

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHh
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~   34 (154)
                      ...-|+++|++|+||||.+-.|.
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            34557789999999999877664

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.25  E-value=0.0015  Score=41.75  Aligned_cols=24  Identities=29%  Similarity=0.285  Sum_probs=20.2

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhcC
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ++=|.+.|.+||||||+.+.|...
T Consensus         3 p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHC
Confidence            366889999999999999988543

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.24  E-value=0.0013  Score=43.12  Aligned_cols=20  Identities=35%  Similarity=0.645  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 031704           15 KLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~   34 (154)
                      -|+++|++|+||||.+-.|.
T Consensus         8 vi~lvGptGvGKTTTiaKLA   27 (207)
T d1okkd2           8 VVLVVGVNGVGKTTTIAKLG   27 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            56889999999999877663

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.22  E-value=0.0019  Score=44.93  Aligned_cols=27  Identities=22%  Similarity=0.255  Sum_probs=21.8

Q ss_pred             CCCceeEEEEEEcCCCCCHHHHHHHHh
Q 031704            8 QEFDYLFKLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus         8 ~~~~~~~ki~v~G~~~~GKstli~~l~   34 (154)
                      .....++=|.|.|++||||||+.+.|.
T Consensus        75 ~~~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          75 NGQRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             C-CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             cCCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            344566889999999999999988874

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.10  E-value=0.0014  Score=44.47  Aligned_cols=24  Identities=25%  Similarity=0.447  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      --|++.|++|+|||+|++.+...-
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcchhHHHHHHHHh
Confidence            359999999999999999987543

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.06  E-value=0.0018  Score=42.41  Aligned_cols=19  Identities=32%  Similarity=0.520  Sum_probs=16.5

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 031704           16 LLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~   34 (154)
                      |+++|++|+||||.+-.|.
T Consensus        13 i~lvGp~GvGKTTTiaKLA   31 (207)
T d1ls1a2          13 WFLVGLQGSGKTTTAAKLA   31 (207)
T ss_dssp             EEEECCTTTTHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6779999999999888764

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.06  E-value=0.0018  Score=42.17  Aligned_cols=20  Identities=25%  Similarity=0.350  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 031704           16 LLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~   35 (154)
                      |++-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77789999999999998763

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.0021  Score=42.19  Aligned_cols=22  Identities=36%  Similarity=0.665  Sum_probs=18.4

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHh
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~   34 (154)
                      ..-|+++|++|+||||.+-.|-
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA   30 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLA   30 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3457889999999999888774

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.03  E-value=0.0012  Score=47.48  Aligned_cols=20  Identities=35%  Similarity=0.745  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 031704           15 KLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~   34 (154)
                      +++++|++|+|||++++.|.
T Consensus        45 n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHH
Confidence            57899999999999986554

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0023  Score=41.12  Aligned_cols=22  Identities=14%  Similarity=0.282  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~~   37 (154)
                      +.+.|++|+|||+|...+..+-
T Consensus        26 ~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          26 TEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH
Confidence            6788999999999999887543

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0016  Score=42.94  Aligned_cols=21  Identities=29%  Similarity=0.436  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      .|+|-|+.||||||+++.|..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999998765

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0026  Score=41.58  Aligned_cols=19  Identities=32%  Similarity=0.350  Sum_probs=15.9

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 031704           16 LLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~   34 (154)
                      |++-|..||||||++..|.
T Consensus         6 I~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6667999999999887764

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.81  E-value=0.0028  Score=41.64  Aligned_cols=22  Identities=27%  Similarity=0.305  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      =+.+.|++|+|||+|+..+...
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            3678899999999999988754

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.78  E-value=0.0036  Score=39.85  Aligned_cols=24  Identities=42%  Similarity=0.621  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF   38 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~   38 (154)
                      -+++.|++|+||||+.-.+...-+
T Consensus        16 gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHcCC
Confidence            588999999999999999886543

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.78  E-value=0.0028  Score=41.96  Aligned_cols=23  Identities=22%  Similarity=0.306  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      =++|.|++|+|||+|...+..+-
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            46788999999999999887543

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.76  E-value=0.0013  Score=45.98  Aligned_cols=20  Identities=40%  Similarity=0.697  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 031704           15 KLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~   34 (154)
                      ++++.|++|+|||++++++.
T Consensus        30 ~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHH
Confidence            68999999999999999885

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.71  E-value=0.0029  Score=44.95  Aligned_cols=22  Identities=27%  Similarity=0.282  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      --+++.||||+|||++.+.+.+
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998864

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.64  E-value=0.0044  Score=39.49  Aligned_cols=24  Identities=38%  Similarity=0.600  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDTF   38 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~~   38 (154)
                      -+++.|++|+||||+...+...-+
T Consensus        17 gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHcCC
Confidence            478999999999999999986543

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.61  E-value=0.0029  Score=44.95  Aligned_cols=23  Identities=30%  Similarity=0.550  Sum_probs=19.8

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      .-+|+++||+|||||-+.++|..
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeeeCCCCccHHHHHHHHHh
Confidence            34699999999999999998753

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.55  E-value=0.0039  Score=40.54  Aligned_cols=23  Identities=35%  Similarity=0.505  Sum_probs=19.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      +=|.+.|..||||||+.+.|...
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHC
Confidence            45789999999999999987543

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.53  E-value=0.0059  Score=41.90  Aligned_cols=24  Identities=21%  Similarity=0.285  Sum_probs=19.8

Q ss_pred             CceeEEEEEEcCCCCCHHHHHHHH
Q 031704           10 FDYLFKLLLIGDSGVGKSTLLLSF   33 (154)
Q Consensus        10 ~~~~~ki~v~G~~~~GKstli~~l   33 (154)
                      +...+=|.+-|++|||||||...+
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l   47 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQI   47 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHH
Confidence            344577889999999999998765

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.52  E-value=0.0006  Score=43.56  Aligned_cols=18  Identities=44%  Similarity=0.706  Sum_probs=15.7

Q ss_pred             EEEcCCCCCHHHHHHHHh
Q 031704           17 LLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        17 ~v~G~~~~GKstli~~l~   34 (154)
                      +++|+.|+||||++.++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            457999999999999874

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.44  E-value=0.0043  Score=42.23  Aligned_cols=23  Identities=39%  Similarity=0.512  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .-|.+.|..|.|||||+..+...
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999999999998754

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.40  E-value=0.0047  Score=40.05  Aligned_cols=22  Identities=36%  Similarity=0.525  Sum_probs=18.9

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      +=|.+.|..||||||+.+.|-.
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999998753

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.38  E-value=0.0049  Score=40.62  Aligned_cols=22  Identities=32%  Similarity=0.610  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      =+++.|++|+|||+|+.++..+
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4678899999999999988654

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.37  E-value=0.0061  Score=38.52  Aligned_cols=25  Identities=36%  Similarity=0.585  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcCCC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSDTF   38 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~~~   38 (154)
                      .-+++.|++|+||||+.-.+...-+
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            3589999999999999998886644

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.36  E-value=0.0045  Score=44.51  Aligned_cols=22  Identities=36%  Similarity=0.510  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      =|++.|++|+||||.++.++..
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCccHHHHHHhhh
Confidence            4899999999999999998864

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.32  E-value=0.0068  Score=42.09  Aligned_cols=22  Identities=27%  Similarity=0.558  Sum_probs=19.1

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      -.++++||+|+|||.|...+..
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCcchhHHHHHHHHh
Confidence            3689999999999999998753

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0051  Score=40.58  Aligned_cols=21  Identities=38%  Similarity=0.545  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      -|+|=|..||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            578889999999999999864

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.30  E-value=0.0033  Score=43.00  Aligned_cols=17  Identities=29%  Similarity=0.653  Sum_probs=15.2

Q ss_pred             EEEcCCCCCHHHHHHHH
Q 031704           17 LLIGDSGVGKSTLLLSF   33 (154)
Q Consensus        17 ~v~G~~~~GKstli~~l   33 (154)
                      +++|+.|+|||+++.++
T Consensus        28 vlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEECCTTTCSTHHHHHH
T ss_pred             EEECCCCCcHHHHHHHH
Confidence            56799999999999876

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.24  E-value=0.0025  Score=43.83  Aligned_cols=20  Identities=35%  Similarity=0.559  Sum_probs=14.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 031704           15 KLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~   34 (154)
                      =|+|.|.+||||||+.+.|.
T Consensus         6 IIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEEESCC---CCTHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            38999999999999999763

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.23  E-value=0.0059  Score=42.76  Aligned_cols=25  Identities=28%  Similarity=0.458  Sum_probs=22.1

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhcC
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      ..++|.|=|.-|+||||+++.|...
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            4589999999999999999998754

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.14  E-value=0.0062  Score=39.81  Aligned_cols=19  Identities=26%  Similarity=0.265  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 031704           16 LLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~   34 (154)
                      |++=|..||||||+++.|.
T Consensus         6 I~iEG~DGsGKST~~~~L~   24 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILY   24 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            7889999999999998775

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.0068  Score=39.96  Aligned_cols=22  Identities=18%  Similarity=0.190  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      =+.|.|++|+|||+|...+..+
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4778999999999999998753

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.09  E-value=0.0092  Score=41.79  Aligned_cols=24  Identities=33%  Similarity=0.393  Sum_probs=21.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..++|.|=|.-|+||||+++.|..
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHS
T ss_pred             ceEEEEEECCccCCHHHHHHHHHH
Confidence            568999999999999999998875

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.07  E-value=0.007  Score=42.18  Aligned_cols=20  Identities=20%  Similarity=0.504  Sum_probs=17.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 031704           16 LLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~   35 (154)
                      +++.|+||+|||.+.+.+-+
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            45579999999999999865

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.98  E-value=0.0092  Score=41.71  Aligned_cols=24  Identities=25%  Similarity=0.447  Sum_probs=21.3

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..++|.|=|+-|+||||+++.|..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            457899999999999999998864

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.98  E-value=0.0075  Score=39.48  Aligned_cols=22  Identities=18%  Similarity=0.229  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~   36 (154)
                      =++|.|++|+|||+|...+..+
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            3678899999999999998754

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.97  E-value=0.0055  Score=39.83  Aligned_cols=22  Identities=32%  Similarity=0.412  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhc
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~   35 (154)
                      --+++.|++++|||.|++.++.
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHH
Confidence            3689999999999999998765

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.90  E-value=0.008  Score=39.82  Aligned_cols=21  Identities=29%  Similarity=0.525  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      .+++.|++|+|||++++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            378899999999999998753

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.90  E-value=0.008  Score=39.30  Aligned_cols=21  Identities=29%  Similarity=0.608  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (154)
                      +.+.|++|+|||.|++.+...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999988754

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.87  E-value=0.0067  Score=43.52  Aligned_cols=23  Identities=39%  Similarity=0.544  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      .+++|+|.+|+|||+++..++.+
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHH
Confidence            47999999999999998877643

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.82  E-value=0.0072  Score=42.92  Aligned_cols=19  Identities=37%  Similarity=0.709  Sum_probs=16.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHH
Q 031704           14 FKLLLIGDSGVGKSTLLLSF   33 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l   33 (154)
                      +++ ++|+.|+|||+++.++
T Consensus        27 l~~-i~G~NGsGKS~ileAi   45 (427)
T d1w1wa_          27 FTS-IIGPNGSGKSNMMDAI   45 (427)
T ss_dssp             EEE-EECSTTSSHHHHHHHH
T ss_pred             EEE-EECCCCCCHHHHHHHH
Confidence            544 6799999999999987

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.81  E-value=0.0091  Score=38.78  Aligned_cols=21  Identities=24%  Similarity=0.525  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      .+++.|++|+||||++..+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            389999999999999997654

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.59  E-value=0.011  Score=38.42  Aligned_cols=20  Identities=35%  Similarity=0.614  Sum_probs=16.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 031704           15 KLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~   34 (154)
                      -+.+.|++|+|||+|...+.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            46788999999999987654

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.38  E-value=0.0097  Score=40.79  Aligned_cols=15  Identities=40%  Similarity=0.833  Sum_probs=13.1

Q ss_pred             EEEEcCCCCCHHHHH
Q 031704           16 LLLIGDSGVGKSTLL   30 (154)
Q Consensus        16 i~v~G~~~~GKstli   30 (154)
                      ++|.|++|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            789999999999654

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.30  E-value=0.0089  Score=40.59  Aligned_cols=17  Identities=24%  Similarity=0.454  Sum_probs=13.8

Q ss_pred             EEEEcCCCCCHHHH-HHH
Q 031704           16 LLLIGDSGVGKSTL-LLS   32 (154)
Q Consensus        16 i~v~G~~~~GKstl-i~~   32 (154)
                      ++|+|++|+||||. +++
T Consensus        17 ~lI~g~aGTGKTt~l~~r   34 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNK   34 (306)
T ss_dssp             EEECCCTTSCHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHH
Confidence            68899999999965 444

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.27  E-value=0.014  Score=39.24  Aligned_cols=19  Identities=32%  Similarity=0.562  Sum_probs=16.5

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 031704           16 LLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~   34 (154)
                      +++.|++|+|||+|+..+.
T Consensus        38 ~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5788999999999988765

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.13  E-value=0.016  Score=38.18  Aligned_cols=21  Identities=29%  Similarity=0.205  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      -|.+.|..||||||..+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999999864

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.74  E-value=0.02  Score=38.30  Aligned_cols=19  Identities=37%  Similarity=0.515  Sum_probs=16.4

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 031704           16 LLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~   34 (154)
                      .++.|++|+|||+|+-.+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5588999999999998764

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.41  E-value=0.025  Score=38.27  Aligned_cols=23  Identities=17%  Similarity=0.304  Sum_probs=19.6

Q ss_pred             eEEEEEEcCCCCCHHHHHHHHhc
Q 031704           13 LFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        13 ~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      .--+.+.|+++.|||+|++.+..
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHH
Confidence            34678889999999999998764

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.38  E-value=0.03  Score=38.73  Aligned_cols=20  Identities=35%  Similarity=0.738  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 031704           15 KLLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~   34 (154)
                      .++++|++|+|||.+.+.+.
T Consensus        55 ~~lf~Gp~G~GKt~lak~la   74 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLA   74 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHH
Confidence            57889999999999998765

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.79  E-value=0.039  Score=37.71  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -|+.++|++|+|||+|+..+..+
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHHH
Confidence            48999999999999999888753

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.31  E-value=0.058  Score=31.85  Aligned_cols=25  Identities=20%  Similarity=0.251  Sum_probs=21.5

Q ss_pred             ceeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           11 DYLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        11 ~~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..-+-|.+-|..|+||+++.+.|..
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHH
Confidence            3458899999999999999999864

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.02  E-value=0.049  Score=38.33  Aligned_cols=18  Identities=28%  Similarity=0.473  Sum_probs=14.8

Q ss_pred             EEEEEcCCCCCHHHHHHH
Q 031704           15 KLLLIGDSGVGKSTLLLS   32 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~   32 (154)
                      -.++.|++|+|||+++..
T Consensus       165 ~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             EEEEECCTTSTHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHH
Confidence            467789999999998754

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.68  E-value=0.079  Score=35.15  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      .|++.|++|+||+.+.+.+....
T Consensus        25 pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          25 PVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEECCCCcCHHHHHHHHHHhc
Confidence            58999999999999999887533

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=91.07  E-value=0.074  Score=35.75  Aligned_cols=20  Identities=30%  Similarity=0.466  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 031704           16 LLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~   35 (154)
                      +.+.|++++|||+|.-.+..
T Consensus        57 tei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            46789999999999988764

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=91.03  E-value=0.079  Score=35.23  Aligned_cols=74  Identities=14%  Similarity=0.096  Sum_probs=41.9

Q ss_pred             EEEEEEeCCCcccccc-cccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCc-EEEEEeCCCCCCchh
Q 031704           61 MKLAIWDTAGQERFRT-LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKVCPWR  136 (154)
Q Consensus        61 ~~~~i~D~~g~~~~~~-~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl~~~~~  136 (154)
                      +.+.++|+|+.-.... ........+|.++++.+. +..++..... ....+.......+.+ .-+|.|+.+...+.+
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~-~~~~i~~~~~~~~~~~~~vv~N~~~~~~~~~  191 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANN-ISKGIQKYAKSGGVRLGGIICNSRKVANEYE  191 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHH-HHHHHHHHBTTBBCEEEEEEEECCSSSCCHH
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHH-HHHHHHhhccccceeccceEEeeecCCCccc
Confidence            4478889986432221 122223457888877765 4556665555 444454443333333 347889998876554

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.23  E-value=0.11  Score=35.16  Aligned_cols=23  Identities=35%  Similarity=0.650  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -|+.++|.+|+|||+|+..+..+
T Consensus        69 Qr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          69 GKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEeeCCCCCCHHHHHHHHHHH
Confidence            38999999999999998888643

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=90.01  E-value=0.11  Score=30.65  Aligned_cols=21  Identities=29%  Similarity=0.221  Sum_probs=16.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 031704           15 KLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~   35 (154)
                      ..++.+++|+|||.++-.++.
T Consensus        10 ~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            457789999999998866543

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.83  E-value=0.13  Score=32.56  Aligned_cols=21  Identities=29%  Similarity=0.434  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 031704           16 LLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~~   36 (154)
                      ++|+|...+|||.+..++...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            589999999999999998743

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.02  E-value=0.14  Score=33.72  Aligned_cols=19  Identities=32%  Similarity=0.399  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 031704           16 LLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~   34 (154)
                      +++.|+..+||||+++.+.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            6788999999999999864

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=88.79  E-value=0.14  Score=33.41  Aligned_cols=19  Identities=37%  Similarity=0.497  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 031704           16 LLLIGDSGVGKSTLLLSFT   34 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~   34 (154)
                      +++.|+..+||||+++.+.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            6889999999999999864

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=88.68  E-value=0.16  Score=32.23  Aligned_cols=20  Identities=20%  Similarity=0.399  Sum_probs=16.7

Q ss_pred             EEEEEcCC-CCCHHHHHHHHh
Q 031704           15 KLLLIGDS-GVGKSTLLLSFT   34 (154)
Q Consensus        15 ki~v~G~~-~~GKstli~~l~   34 (154)
                      |+.|.|-. |+||||+.--|.
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHH
Confidence            78899995 999999887663

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=88.42  E-value=0.5  Score=29.45  Aligned_cols=28  Identities=18%  Similarity=0.368  Sum_probs=18.3

Q ss_pred             CCceeEEEEEEcC-CCCCHHHHHHHHhcCC
Q 031704            9 EFDYLFKLLLIGD-SGVGKSTLLLSFTSDT   37 (154)
Q Consensus         9 ~~~~~~ki~v~G~-~~~GKstli~~l~~~~   37 (154)
                      ...+.+||.|+|. .+.|- +++.++..+.
T Consensus        20 ~~k~~~kV~I~GA~G~Ig~-~l~~~La~g~   48 (175)
T d7mdha1          20 SWKKLVNIAVSGAAGMISN-HLLFKLASGE   48 (175)
T ss_dssp             -CCCCEEEEEETTTSHHHH-HHHHHHHHTT
T ss_pred             ccCCCcEEEEECCCcHHHH-HHHHHHHcCc
Confidence            3446789999996 55664 5555666544

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.40  E-value=1.6  Score=26.11  Aligned_cols=23  Identities=26%  Similarity=0.596  Sum_probs=17.6

Q ss_pred             EEEEEcC-CCCCHHHHHHHHhcCCC
Q 031704           15 KLLLIGD-SGVGKSTLLLSFTSDTF   38 (154)
Q Consensus        15 ki~v~G~-~~~GKstli~~l~~~~~   38 (154)
                      ||.++|. ..+| +++...+..+..
T Consensus         2 Kv~IiGA~G~VG-~~~A~~l~~~~~   25 (144)
T d1mlda1           2 KVAVLGASGGIG-QPLSLLLKNSPL   25 (144)
T ss_dssp             EEEEETTTSTTH-HHHHHHHHTCTT
T ss_pred             eEEEECCCChHH-HHHHHHHHhCCc
Confidence            8999995 7899 566777776554

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=87.90  E-value=0.19  Score=33.73  Aligned_cols=74  Identities=15%  Similarity=0.094  Sum_probs=37.7

Q ss_pred             EEEEEEeCCCcccccccccc-cccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcE-EEEEeCCCCCCchh
Q 031704           61 MKLAIWDTAGQERFRTLTSS-YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK-LLVGNKVDKVCPWR  136 (154)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~-~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-ivv~nK~Dl~~~~~  136 (154)
                      +.+.++|+|+.......... ....++.++++.. .+..++..+.. ..+.+.......+.++ .+|.|+.+.....+
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~~~-~~~~i~~~~~~~~~~~~gvv~n~~~~~~~~~  194 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAANN-ISKGIVKYANSGSVRLGGLICNSRNTDREDE  194 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHHHH-HHHHHHHHHTTSCCEEEEEEEECCCCTTHHH
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHHHH-HHHHHHhhhhcccccccceeehhhcchhhHH
Confidence            44778888765432221111 1234666666654 33455555555 3334433323344443 47899987654443

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.31  E-value=0.18  Score=32.15  Aligned_cols=24  Identities=13%  Similarity=0.092  Sum_probs=20.9

Q ss_pred             eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704           12 YLFKLLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        12 ~~~ki~v~G~~~~GKstli~~l~~   35 (154)
                      ....+++.|++|+|||+++..+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999988764

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=86.89  E-value=0.21  Score=33.30  Aligned_cols=19  Identities=32%  Similarity=0.592  Sum_probs=15.1

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 031704           15 KLLLIGDSGVGKSTLLLSF   33 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l   33 (154)
                      -|++.|..|+||||+.-.+
T Consensus        10 ~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1          10 YLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCcChHHHHHHHH
Confidence            4567899999999976654

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=86.35  E-value=0.16  Score=34.90  Aligned_cols=15  Identities=47%  Similarity=0.680  Sum_probs=13.0

Q ss_pred             EEEcCCCCCHHHHHH
Q 031704           17 LLIGDSGVGKSTLLL   31 (154)
Q Consensus        17 ~v~G~~~~GKstli~   31 (154)
                      ++.|.+|.|||||-.
T Consensus        18 lfFGLSGTGKTTLs~   32 (313)
T d2olra1          18 VFFGLSGTGKTTLST   32 (313)
T ss_dssp             EEECSTTSSHHHHHC
T ss_pred             EEEccCCCCccccee
Confidence            688999999999763

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=86.35  E-value=0.24  Score=33.22  Aligned_cols=20  Identities=30%  Similarity=0.418  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 031704           16 LLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~   35 (154)
                      ..+.|++++|||+|...+..
T Consensus        60 tei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHH
Confidence            45789999999999988764

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.34  E-value=0.17  Score=34.39  Aligned_cols=23  Identities=26%  Similarity=0.486  Sum_probs=19.3

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -|+.++|.+|+|||+|+..+..+
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHHh
Confidence            47899999999999998776643

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=86.25  E-value=0.24  Score=32.83  Aligned_cols=19  Identities=37%  Similarity=0.786  Sum_probs=14.1

Q ss_pred             EEEE-EcCCCCCHHHHHHHH
Q 031704           15 KLLL-IGDSGVGKSTLLLSF   33 (154)
Q Consensus        15 ki~v-~G~~~~GKstli~~l   33 (154)
                      ||++ .|..|+||||+.-.|
T Consensus        21 ~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          21 GLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            4544 499999999975544

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=85.79  E-value=0.17  Score=34.80  Aligned_cols=16  Identities=44%  Similarity=0.613  Sum_probs=13.5

Q ss_pred             EEEEcCCCCCHHHHHH
Q 031704           16 LLLIGDSGVGKSTLLL   31 (154)
Q Consensus        16 i~v~G~~~~GKstli~   31 (154)
                      .++.|.+|.|||||-.
T Consensus        17 alffGLSGTGKTTLs~   32 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEEECTTSCHHHHTC
T ss_pred             EEEEccCCCCcccccc
Confidence            4788999999999654

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.68  E-value=0.27  Score=32.97  Aligned_cols=20  Identities=25%  Similarity=0.411  Sum_probs=16.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 031704           16 LLLIGDSGVGKSTLLLSFTS   35 (154)
Q Consensus        16 i~v~G~~~~GKstli~~l~~   35 (154)
                      ..+.|++++|||+|...+..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            45789999999999877653

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.21  E-value=1.3  Score=28.02  Aligned_cols=66  Identities=11%  Similarity=0.045  Sum_probs=41.6

Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEE-EEEeCCCCCCc
Q 031704           61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL-LVGNKVDKVCP  134 (154)
Q Consensus        61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~i-vv~nK~Dl~~~  134 (154)
                      +.+.++|+++...  ......+..+|.++++.... ..++..... ..+.+++    .+.|+. +|.||.+....
T Consensus       112 ~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~-~~~~~~~----~~~~~~giv~N~~~~~~~  178 (237)
T d1g3qa_         112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMK-VGIVLKK----AGLAILGFVLNRYGRSDR  178 (237)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHH-HHHHHHH----TTCEEEEEEEEEETSCTT
T ss_pred             CCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhH-HHHHHhh----hhhhhhhhhhcccccccc
Confidence            4588889987543  23344567799999988754 455555554 3334433    355544 88999987543

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=85.07  E-value=1.8  Score=25.87  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=16.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 031704           15 KLLLIGDSGVGKSTLLLSFTSDT   37 (154)
Q Consensus        15 ki~v~G~~~~GKstli~~l~~~~   37 (154)
                      ||.|+|..++| +++...+..+.
T Consensus         3 KI~IIGaG~VG-~~~a~~l~~~~   24 (146)
T d1hyha1           3 KIGIIGLGNVG-AAVAHGLIAQG   24 (146)
T ss_dssp             EEEEECCSHHH-HHHHHHHHHHT
T ss_pred             eEEEECcCHHH-HHHHHHHHhcC
Confidence            89999987777 56677666544

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.63  E-value=0.22  Score=34.33  Aligned_cols=15  Identities=47%  Similarity=0.682  Sum_probs=13.2

Q ss_pred             EEEcCCCCCHHHHHH
Q 031704           17 LLIGDSGVGKSTLLL   31 (154)
Q Consensus        17 ~v~G~~~~GKstli~   31 (154)
                      ++.|.+|.|||||-.
T Consensus        18 lfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          18 VFFGLSGTGKTTLSA   32 (323)
T ss_dssp             EEECCTTSSHHHHHC
T ss_pred             EEEccCCCCccccee
Confidence            588999999999873

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.42  E-value=0.31  Score=30.46  Aligned_cols=17  Identities=24%  Similarity=0.557  Sum_probs=13.3

Q ss_pred             EEEEEcCCCCCHHHHHH
Q 031704           15 KLLLIGDSGVGKSTLLL   31 (154)
Q Consensus        15 ki~v~G~~~~GKstli~   31 (154)
                      +.++.+++|+|||...-
T Consensus        25 n~lv~~pTGsGKT~i~~   41 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIAM   41 (200)
T ss_dssp             CEEEECCTTSCHHHHHH
T ss_pred             CeEEEeCCCCcHHHHHH
Confidence            46788999999996433

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=84.35  E-value=0.33  Score=29.07  Aligned_cols=17  Identities=24%  Similarity=0.430  Sum_probs=13.1

Q ss_pred             EEEcCCCCCHHH-HHHHH
Q 031704           17 LLIGDSGVGKST-LLLSF   33 (154)
Q Consensus        17 ~v~G~~~~GKst-li~~l   33 (154)
                      +++||=.||||| |++++
T Consensus         6 ~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEECSTTSCHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHH
Confidence            357999999999 55554

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=83.66  E-value=0.19  Score=29.25  Aligned_cols=15  Identities=27%  Similarity=0.268  Sum_probs=12.3

Q ss_pred             EEEEEcCCCCCHHHH
Q 031704           15 KLLLIGDSGVGKSTL   29 (154)
Q Consensus        15 ki~v~G~~~~GKstl   29 (154)
                      +.++.+++|+|||..
T Consensus         9 ~~il~~~tGsGKT~~   23 (140)
T d1yksa1           9 TTVLDFHPGAGKTRR   23 (140)
T ss_dssp             EEEECCCTTSSTTTT
T ss_pred             cEEEEcCCCCChhHH
Confidence            567889999999943

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=83.19  E-value=0.24  Score=33.42  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=18.8

Q ss_pred             EEEEEEcCCCCCHHHHHHHHhcC
Q 031704           14 FKLLLIGDSGVGKSTLLLSFTSD   36 (154)
Q Consensus        14 ~ki~v~G~~~~GKstli~~l~~~   36 (154)
                      -|+.++|.+|+|||+|+..+...
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHHT
T ss_pred             ceEeeccCCCCChHHHHHHHHhh
Confidence            47889999999999998765443

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=80.34  E-value=0.96  Score=28.89  Aligned_cols=65  Identities=20%  Similarity=0.266  Sum_probs=34.8

Q ss_pred             EEEEEeCCCcccccccc----ccc--ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704           62 KLAIWDTAGQERFRTLT----SSY--YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP  134 (154)
Q Consensus        62 ~~~i~D~~g~~~~~~~~----~~~--~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~  134 (154)
                      .+.++||+|........    ..+  .-+.+-.++|.|++....-......+.+.+       +. --++.||.|....
T Consensus        94 d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~-------~~-~~~I~TKlDe~~~  164 (207)
T d1ls1a2          94 DLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV-------GV-TGLVLTKLDGDAR  164 (207)
T ss_dssp             CEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT-------CC-CEEEEECGGGCSS
T ss_pred             cceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC-------CC-CeeEEeecCcccc
Confidence            57789999954332211    111  124578899999876543222222111211       11 1378899997443