Citrus Sinensis ID: 031724

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150----
Protein Sequence
MGESSSSASASEQQSFFRKHWEGYKEFWGERFSFLENYTRFTKREKPLPSWSPSDVDAFIATDPVHGPALKSAREAVNFALAGSLIGAVSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFGQEFANHYLQLYRMDTLAAQSKFMEWWEAKCAERS
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mgessssasasEQQSFFRKHWEGYKEFWGERFSFLENYTRftkrekplpswspsdvdafiatdpvhgpaLKSAREAVNFALAGSLIGAVSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFGQEFANHYLQLYRMDTLAAQSKFMEWWEAKCAERS
Flexible Loop (DISEMBL)
mgessssasaseQQSFFRKHWEGYKEFWGERFSFLENYTRFTKREKPLPSWSPSDVDAFIATDPVHGPALKSAREAVNFALAGSLIGAVSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFGQEFANHYLQLYRMDTLAAQSKFMEWWEAKCAERS
Low Complexity Region (SEG)
MGessssasaseqqsFFRKHWEGYKEFWGERFSFLENYTRFTKREKPLPSWSPSDVDAFIATDPVHGPALKSAREAVNFALAGSLIGAVSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFGQEFANHYLQLYRMDTLAAQSKFMEWWEAKCAERS
Disordered region (IsUnstruct)
***************FFRKHWEGYKEFWGERFSFLENYTRF***************************ALKSAREAVNFALAGSLIGAVSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFGQEFANHYLQLYRMDTLAAQSKFMEWWEAKC****
Disordered Region (DISOPRED)
*****************RKHWEGYKEFWGERFSFLENYTRFTKREKP******SDVDAFIATDPVHGPALKSAREAVNFALAGSLIGAVSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFGQEFANHYLQLYRMDTLAAQSKFMEWWEAKC****
Disordered Region (DISEMBL)
****************FRKHWEGYKEFWGERFSFLENYTRFTKREKPLPSWSPSDVDAFIATDPVHGPALKSAREAVNFALAGSLIGAVSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFGQEFANHYLQLYRMDTLAAQSKFMEWWEAKCAERS
Disordered Region (DISPRO)
**************SFFRKHWEGYKEFWGERFSFLENYTRFTKREKPLPSWSPSDVDAFIATDPVHGPALKSAREAVNFALAGSLIGAVSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFGQEFANHYLQLYRMDTLAAQSKFMEWWEAKC****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGESSSSASASEQQSFFRKHWEGYKEFWGERFSFLENYTRFTKREKPLPSWSPSDVDAFIATDPVHGPALKSAREAVNFALAGSLIGAVSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFGQEFANHYLQLYRMDTLAAQSKFMEWWEAKCAERS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
313586603	146	hypothetical protein 33 [Hevea brasilien	0.941	0.993	0.779	3e-63
255549625	148	conserved hypothetical protein [Ricinus	0.954	0.993	0.748	2e-60
224106894	149	predicted protein [Populus trichocarpa]	0.967	1.0	0.710	6e-60
449442602	147	PREDICTED: uncharacterized protein LOC10	0.909	0.952	0.75	2e-58
225437924	146	PREDICTED: uncharacterized protein LOC10	0.941	0.993	0.648	4e-52
297843632	142	hypothetical protein ARALYDRAFT_888081 [	0.902	0.978	0.676	1e-51
18390902	142	uncharacterized protein [Arabidopsis tha	0.902	0.978	0.676	5e-51
359807259	141	uncharacterized protein LOC100777981 [Gl	0.870	0.950	0.686	8e-51
357475247	201	hypothetical protein MTR_4g084320 [Medic	0.922	0.706	0.664	1e-50
255636590	141	unknown [Glycine max]	0.870	0.950	0.679	3e-50

>gi|313586603|gb|ADR71312.1| hypothetical protein 33 [Hevea brasiliensis]

 Score =  245 bits (626), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 113/145 (77%), Positives = 124/145 (85%)

Query: 10  ASEQQSFFRKHWEGYKEFWGERFSFLENYTRFTKREKPLPSWSPSDVDAFIATDPVHGPA 69
           A + +SFFRKHWEGYKEFWGERFSFLENY+RF KR+ PLPSWS SDV+ FIA+DPVHGP 
Sbjct: 2   ADDSESFFRKHWEGYKEFWGERFSFLENYSRFIKRDNPLPSWSASDVEEFIASDPVHGPT 61

Query: 70  LKSAREAVNFALAGSLIGAVSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFGQEFANHYLQ 129
           LK+AREA  F LAGS+IGAVSTAGVAWKYSRS HG GLS  AG VFGWTFGQE ANH+LQ
Sbjct: 62  LKTAREAAKFGLAGSVIGAVSTAGVAWKYSRSFHGAGLSFLAGGVFGWTFGQEIANHWLQ 121

Query: 130 LYRMDTLAAQSKFMEWWEAKCAERS 154
           LYR+DT+AAQ KFMEWWE KC  R 
Sbjct: 122 LYRLDTMAAQVKFMEWWENKCDRRD 146

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549625|ref|XP_002515864.1| conserved hypothetical protein [Ricinus communis] gi|223545019|gb|EEF46533.1| conserved hypothetical protein [Ricinus communis]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 110/147 (74%), Positives = 122/147 (82%)

Query: 8   ASASEQQSFFRKHWEGYKEFWGERFSFLENYTRFTKREKPLPSWSPSDVDAFIATDPVHG 67
           A  +E  SFFRKHWEGYKEFWGERFSFLENY+RF KR+KPLPSWS SDV+ FIA+DPVHG
Sbjct: 2   ADDAETNSFFRKHWEGYKEFWGERFSFLENYSRFIKRDKPLPSWSSSDVEQFIASDPVHG 61

Query: 68  PALKSAREAVNFALAGSLIGAVSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFGQEFANHY 127
           P LK+ REA  FA  GS+IGAVSTAG AWKYSRSLHG GLS  AG VFG TFG E ANH+
Sbjct: 62  PTLKTVREAAKFAFTGSVIGAVSTAGAAWKYSRSLHGAGLSFLAGGVFGLTFGHEVANHW 121

Query: 128 LQLYRMDTLAAQSKFMEWWEAKCAERS 154
           +QLYR+DT+AAQ KFMEWWE KC  +S
Sbjct: 122 MQLYRLDTMAAQVKFMEWWEKKCEGQS 148

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106894|ref|XP_002314320.1| predicted protein [Populus trichocarpa] gi|118481365|gb|ABK92625.1| unknown [Populus trichocarpa] gi|222850728|gb|EEE88275.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (598), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 108/152 (71%), Positives = 124/152 (81%), Gaps = 3/152 (1%)

Query: 1   MGESSSSASASEQQSFFRKHWEGYKEFWGERFSFLENYTRFTKREKPLPSWSPSDVDAFI 60
           MGE S       QQSFF+KHWEG+ EFWG+RFSF+ENY RF +R+KP+PSWS SDV  FI
Sbjct: 1   MGEPSD---LQHQQSFFKKHWEGFTEFWGDRFSFVENYARFLRRDKPIPSWSDSDVQEFI 57

Query: 61  ATDPVHGPALKSAREAVNFALAGSLIGAVSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFG 120
           A+D +HGP L++AREAVNF L GS+IGAVSTAGVAWKYSRSLHG GLS  AG VFGWTFG
Sbjct: 58  ASDHIHGPTLRTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFG 117

Query: 121 QEFANHYLQLYRMDTLAAQSKFMEWWEAKCAE 152
            E  NH+LQLYR+DT+AAQ KF+EWWE KC E
Sbjct: 118 HEVGNHWLQLYRLDTMAAQVKFIEWWEKKCGE 149

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442602|ref|XP_004139070.1| PREDICTED: uncharacterized protein LOC101222313 [Cucumis sativus] gi|449476153|ref|XP_004154655.1| PREDICTED: uncharacterized protein LOC101227779 [Cucumis sativus]

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/140 (75%), Positives = 118/140 (84%)

Query: 11  SEQQSFFRKHWEGYKEFWGERFSFLENYTRFTKREKPLPSWSPSDVDAFIATDPVHGPAL 70
           S  QSFFRKHWEGYKEFW +RFS L+NY+ + +R+ PLPSWS SDV+ FIA+DPVHGP L
Sbjct: 4   SSSQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHGPVL 63

Query: 71  KSAREAVNFALAGSLIGAVSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFGQEFANHYLQL 130
           K+AREAVNF L GS+IGAVSTAGVAWKYSRSLHG GLS  AG VFGWTFGQE ANH+ QL
Sbjct: 64  KTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGQEIANHWYQL 123

Query: 131 YRMDTLAAQSKFMEWWEAKC 150
           YR+DT+AAQ KFMEWW  K 
Sbjct: 124 YRVDTMAAQVKFMEWWRNKS 143

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437924|ref|XP_002268190.1| PREDICTED: uncharacterized protein LOC100241287 [Vitis vinifera] gi|297744252|emb|CBI37222.3| unnamed protein product [Vitis vinifera]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 94/145 (64%), Positives = 117/145 (80%)

Query: 10  ASEQQSFFRKHWEGYKEFWGERFSFLENYTRFTKREKPLPSWSPSDVDAFIATDPVHGPA 69
           A    SFFR+HWEG+K++WGERF+ L+NY +F  R+KP+P WS SDV+ FIA+DPV+GP 
Sbjct: 2   ADSSPSFFRRHWEGWKDYWGERFAILDNYAKFVNRDKPIPKWSDSDVEEFIASDPVYGPT 61

Query: 70  LKSAREAVNFALAGSLIGAVSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFGQEFANHYLQ 129
           L++ REA  FA+AG++IGAVSTA V+WKYSRS HG  LS AAG VFG TFGQEFA+H+LQ
Sbjct: 62  LRTTREAAKFAVAGAVIGAVSTAAVSWKYSRSPHGAALSFAAGGVFGVTFGQEFASHWLQ 121

Query: 130 LYRMDTLAAQSKFMEWWEAKCAERS 154
           LYR+DTL A+ KF+EWWE K   RS
Sbjct: 122 LYRLDTLGAEVKFLEWWERKIGGRS 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843632|ref|XP_002889697.1| hypothetical protein ARALYDRAFT_888081 [Arabidopsis lyrata subsp. lyrata] gi|297335539|gb|EFH65956.1| hypothetical protein ARALYDRAFT_888081 [Arabidopsis lyrata subsp. lyrata]

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 94/139 (67%), Positives = 110/139 (79%)

Query: 12  EQQSFFRKHWEGYKEFWGERFSFLENYTRFTKREKPLPSWSPSDVDAFIATDPVHGPALK 71
           + +SF  K+W G+K+FW +R SF ENYTRFTKR+ PLPSWS SDVD FIA+DPVHGP LK
Sbjct: 3   DSESFVGKNWNGFKDFWSDRLSFFENYTRFTKRDSPLPSWSSSDVDEFIASDPVHGPTLK 62

Query: 72  SAREAVNFALAGSLIGAVSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFGQEFANHYLQLY 131
           +AREAV F + G+ +GAVSTA  AWKYSRS HG  LS   G VFGWTFGQE ANH LQLY
Sbjct: 63  TAREAVTFGVTGAALGAVSTAAFAWKYSRSPHGAALSFLGGGVFGWTFGQEVANHTLQLY 122

Query: 132 RMDTLAAQSKFMEWWEAKC 150
           ++DT+AAQ KF+EWWE K 
Sbjct: 123 KLDTMAAQVKFLEWWERKS 141

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390902|ref|NP_563819.1| uncharacterized protein [Arabidopsis thaliana] gi|15450427|gb|AAK96507.1| At1g08480/T27G7_10 [Arabidopsis thaliana] gi|16974435|gb|AAL31221.1| At1g08480/T27G7_10 [Arabidopsis thaliana] gi|332190176|gb|AEE28297.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  205 bits (522), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 94/139 (67%), Positives = 109/139 (78%)

Query: 12  EQQSFFRKHWEGYKEFWGERFSFLENYTRFTKREKPLPSWSPSDVDAFIATDPVHGPALK 71
           + +SF  K+W G K+FW +R SF ENYTRFTKR+ PLPSWS SDV+ FIA+DPVHGP LK
Sbjct: 3   DSESFVGKNWNGLKDFWSDRLSFFENYTRFTKRDAPLPSWSSSDVEEFIASDPVHGPTLK 62

Query: 72  SAREAVNFALAGSLIGAVSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFGQEFANHYLQLY 131
           +AREAV F + G+ +GAVSTA  AWKYSRS HG  LS   G VFGWTFGQE ANH LQLY
Sbjct: 63  TAREAVTFGVTGAALGAVSTAAFAWKYSRSPHGAALSFLGGGVFGWTFGQEVANHTLQLY 122

Query: 132 RMDTLAAQSKFMEWWEAKC 150
           ++DT+AAQ KFMEWWE K 
Sbjct: 123 KLDTMAAQVKFMEWWERKS 141

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807259|ref|NP_001241624.1| uncharacterized protein LOC100777981 [Glycine max] gi|255627187|gb|ACU13938.1| unknown [Glycine max]

 Score =  204 bits (520), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 92/134 (68%), Positives = 108/134 (80%)

Query: 18  RKHWEGYKEFWGERFSFLENYTRFTKREKPLPSWSPSDVDAFIATDPVHGPALKSAREAV 77
           + +WEGYK FW ERFSFL NY+RF  R+KP+PSWS SDV+ FIA+DPVHGP LKSAREAV
Sbjct: 6   QSYWEGYKAFWSERFSFLSNYSRFINRDKPIPSWSSSDVEEFIASDPVHGPVLKSAREAV 65

Query: 78  NFALAGSLIGAVSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFGQEFANHYLQLYRMDTLA 137
            F L GS +GA+ TAG AWKYS+SLHG GLS  AG +FGWTFG E ANH LQLYR+DTLA
Sbjct: 66  QFGLTGSALGALFTAGYAWKYSKSLHGAGLSFLAGGIFGWTFGHEIANHTLQLYRVDTLA 125

Query: 138 AQSKFMEWWEAKCA 151
           A++KF++WW  K  
Sbjct: 126 AEAKFLDWWNKKTG 139

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475247|ref|XP_003607909.1| hypothetical protein MTR_4g084320 [Medicago truncatula] gi|355508964|gb|AES90106.1| hypothetical protein MTR_4g084320 [Medicago truncatula]

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 97/146 (66%), Positives = 115/146 (78%), Gaps = 4/146 (2%)

Query: 5   SSSASASEQQSFFRKHWEGYKEFWGERFSFLENYTRFTKREKPLPSWSPSDVDAFIATDP 64
           +S+   S  QSF    WEGYKEFWGERFSF+ NY+ FTKR+KPL SWS SDV+ FIA+DP
Sbjct: 56  ASNTQDSSSQSF----WEGYKEFWGERFSFMSNYSNFTKRDKPLTSWSNSDVEDFIASDP 111

Query: 65  VHGPALKSAREAVNFALAGSLIGAVSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFGQEFA 124
           V GP LK+AREAV + LAGS +GA+ TA  AWKYSRSLHG GLS  AG VFGWT+G E A
Sbjct: 112 VLGPVLKTAREAVQYGLAGSALGALFTASFAWKYSRSLHGAGLSFLAGGVFGWTYGHEIA 171

Query: 125 NHYLQLYRMDTLAAQSKFMEWWEAKC 150
           NH LQLYR+DTLA+++KF+EWW+ K 
Sbjct: 172 NHALQLYRVDTLASEAKFLEWWKRKT 197

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636590|gb|ACU18633.1| unknown [Glycine max]

 Score =  202 bits (514), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 91/134 (67%), Positives = 107/134 (79%)

Query: 18  RKHWEGYKEFWGERFSFLENYTRFTKREKPLPSWSPSDVDAFIATDPVHGPALKSAREAV 77
           + +WEGYK  W ERFSFL NY+RF  R+KP+PSWS SDV+ FIA+DPVHGP LKSAREAV
Sbjct: 6   QSYWEGYKALWSERFSFLSNYSRFINRDKPIPSWSSSDVEEFIASDPVHGPVLKSAREAV 65

Query: 78  NFALAGSLIGAVSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFGQEFANHYLQLYRMDTLA 137
            F L GS +GA+ TAG AWKYS+SLHG GLS  AG +FGWTFG E ANH LQLYR+DTLA
Sbjct: 66  QFGLTGSALGALFTAGYAWKYSKSLHGAGLSFLAGGIFGWTFGHEIANHTLQLYRVDTLA 125

Query: 138 AQSKFMEWWEAKCA 151
           A++KF++WW  K  
Sbjct: 126 AEAKFLDWWNKKTG 139

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
TAIR|locus:2201851	142	SDH6 "AT1G08480" [Arabidopsis	0.870	0.943	0.694	1.3e-50

TAIR|locus:2201851 SDH6 "AT1G08480" [Arabidopsis thaliana (taxid:3702)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 93/134 (69%), Positives = 106/134 (79%)

Query:    16 FFRKHWEGYKEFWGERFSFLENYTRFTKREKPLPSWSPSDVDAFIATDPVHGPALKSARE 75
             F  K+W G K+FW +R SF ENYTRFTKR+ PLPSWS SDV+ FIA+DPVHGP LK+ARE
Sbjct:     7 FVGKNWNGLKDFWSDRLSFFENYTRFTKRDAPLPSWSSSDVEEFIASDPVHGPTLKTARE 66

Query:    76 AVNFALAGSLIGAVSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFGQEFANHYLQLYRMDT 135
             AV F + G+ +GAVSTA  AWKYSRS HG  LS   G VFGWTFGQE ANH LQLY++DT
Sbjct:    67 AVTFGVTGAALGAVSTAAFAWKYSRSPHGAALSFLGGGVFGWTFGQEVANHTLQLYKLDT 126

Query:   136 LAAQSKFMEWWEAK 149
             +AAQ KFMEWWE K
Sbjct:   127 MAAQVKFMEWWERK 140


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.133   0.439    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      154       141   0.00091  102 3  11 22  0.41    31
                                                     30  0.47    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  163 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.93u 0.10s 14.03t   Elapsed:  00:00:01
  Total cpu time:  13.93u 0.10s 14.03t   Elapsed:  00:00:01
  Start:  Thu May  9 21:34:29 2013   End:  Thu May  9 21:34:30 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005749 "mitochondrial respiratory chain complex II" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009853 "photorespiration" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	154
PLN02720	140	PLN02720, PLN02720, complex II	2e-74

>gnl|CDD|178322 PLN02720, PLN02720, complex II

 Score =  218 bits (556), Expect = 2e-74
 Identities = 92/140 (65%), Positives = 111/140 (79%)

Query: 12  EQQSFFRKHWEGYKEFWGERFSFLENYTRFTKREKPLPSWSPSDVDAFIATDPVHGPALK 71
             +SFF+KHWEG K+FW +RFSFLENY RF+KR+KPLP WS SDVD FIA+DPV+GP LK
Sbjct: 1   MSESFFKKHWEGLKDFWRDRFSFLENYARFSKRDKPLPPWSDSDVDEFIASDPVYGPQLK 60

Query: 72  SAREAVNFALAGSLIGAVSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFGQEFANHYLQLY 131
           + REA  FA+ G+ +GAVSTAGVAWKYS+S HG  L+   G VFGW FGQE ANH+LQLY
Sbjct: 61  TMREAATFAVTGAAVGAVSTAGVAWKYSKSPHGAALAFLGGGVFGWAFGQEVANHWLQLY 120

Query: 132 RMDTLAAQSKFMEWWEAKCA 151
           + DT+AA  KF++WWE K  
Sbjct: 121 KFDTMAANVKFLDWWERKNG 140

Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	154
PLN02720	140	complex II	100.0
PF05433	42	Rick_17kDa_Anti: Glycine zipper 2TM domain; InterP	92.37
PF13436	118	Gly-zipper_OmpA: Glycine-zipper containing OmpA-li	86.51
PF05818	215	TraT: Enterobacterial TraT complement resistance p	86.06
PRK10510	219	putative outer membrane lipoprotein; Provisional	85.08
PRK11280	170	hypothetical protein; Provisional	84.16
PF12597	118	DUF3767: Protein of unknown function (DUF3767); In	80.11

>PLN02720 complex II

Probab=100.00  E-value=2.1e-89  Score=534.87  Aligned_cols=139  Identities=66%  Similarity=1.264  Sum_probs=137.3

Q ss_pred             HhHHhHhhHHhHHHHHhhhhhhhhhhhhhhcCCCCCCCCCchhhHHhhhcCCCCchhHHhHHHHHHHHhhhhhhhhhhhh
Q 031724           13 QQSFFRKHWEGYKEFWGERFSFLENYTRFTKREKPLPSWSPSDVDAFIATDPVHGPALKSAREAVNFALAGSLIGAVSTA   92 (154)
Q Consensus        13 ~~~~~k~~weg~K~~W~e~Fsfl~~y~~~~~RdkPLP~Ws~sDVeeFIaSDPVyGP~LK~~Rea~~fa~aGa~vGa~~ta   92 (154)
                      +.+|||+||||+|+||+||||||+||++|++||||||||||||||||||||||||||||+||||++||++|++||||+||
T Consensus         2 ~~~~~~~~w~g~K~~w~e~fs~l~~y~~~~~rdkPLP~Ws~sDVeeFIaSDPVyGPqLk~~rea~~fa~~Ga~vGa~~ta   81 (140)
T PLN02720          2 SESFFKKHWEGLKDFWRDRFSFLENYARFSKRDKPLPPWSDSDVDEFIASDPVYGPQLKTMREAATFAVTGAAVGAVSTA   81 (140)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCchhhHHHHHhcCCCcchHHHHHHHHHHHHhhhhhhhhhhhh
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccCcchhHHHhhhhhHHhhhhhhhHHHHHHHHhhcchhhhhHHHHHHHHHHhc
Q 031724           93 GVAWKYSRSLHGTGLSLAAGAVFGWTFGQEFANHYLQLYRMDTLAAQSKFMEWWEAKCA  151 (154)
Q Consensus        93 gva~kYSks~hGa~ls~l~G~~~G~~~G~EvAnh~lqLYk~d~~~a~~kFl~WWE~K~~  151 (154)
                      ||||||||+|||++||||+|+|||||||+|||||||||||||||+||+|||||||||++
T Consensus        82 g~a~kysk~phga~lsfl~G~~~G~~~G~EvAnh~lqLYk~d~m~a~~KFl~WWE~K~~  140 (140)
T PLN02720         82 GVAWKYSKSPHGAALAFLGGGVFGWAFGQEVANHWLQLYKFDTMAANVKFLDWWERKNG  140 (140)
T ss_pred             HHHHHhhcCCchHHHHHhccchhhhhHhHHHHHHHHHHHhccccchhhHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999999999999984

>PF05433 Rick_17kDa_Anti: Glycine zipper 2TM domain; InterPro: IPR008816 This domain includes a putative two transmembrane alpha-helical region that contains glycine zipper motifs []

Probab=92.37  E-value=0.17  Score=32.69  Aligned_cols=41  Identities=34%  Similarity=0.411  Sum_probs=29.9

Q ss_pred             hhhhhhhhhhhhhhhhccCcchhHHHhhhhhHHhhhhhhhHH
Q 031724           83 GSLIGAVSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFGQEFA  124 (154)
Q Consensus        83 Ga~vGa~~tagva~kYSks~hGa~ls~l~G~~~G~~~G~EvA  124 (154)
                      |+++||+.-+.+.... .+-.+..++.+.|++.|...|++|+
T Consensus         2 G~~~Ga~~Ga~~G~~i-g~~~g~~~g~~~Ga~~Ga~~G~~ig   42 (42)
T PF05433_consen    2 GALIGAAVGAVAGSQI-GGGNGRTLGAVAGAVAGALIGNQIG   42 (42)
T ss_pred             chHHHHHHHHHHHHHh-cCCCCcHHHHHHHHHHHHHHHhhcC
Confidence            4556665555555666 3456778899999999999998873

The domain is found in several Rickettsia genus specific 17 kDa surface antigen proteins [].; GO: 0019867 outer membrane

>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain

Probab=86.51  E-value=1.8  Score=32.53  Aligned_cols=50  Identities=26%  Similarity=0.234  Sum_probs=31.9

Q ss_pred             HHHHHHHHhhhhhhhhhhhhhhhhhhccCcchhHHHhhhhhHHhhhhhhhHHHH
Q 031724           73 AREAVNFALAGSLIGAVSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFGQEFANH  126 (154)
Q Consensus        73 ~Rea~~fa~aGa~vGa~~tagva~kYSks~hGa~ls~l~G~~~G~~~G~EvAnh  126 (154)
                      .++++.=+++|+++||+.-+    -..++.-|++..-.+|+++|.+.|.-..+.
T Consensus        49 ~~~~~~ga~~GA~~GA~~Ga----~~G~~~~ga~~GAa~Ga~~G~~~g~~~~~~   98 (118)
T PF13436_consen   49 AENTAGGAAIGAAAGAAIGA----IIGGNGRGAAIGAAAGAAVGAAAGAARGRY   98 (118)
T ss_pred             hhhHHHHHHHHHHHHHHHHh----hcCCCccchHHHHHHHHHHHHHhhhhhhhh
Confidence            34555555555555554333    334467778888888888888888766654

>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []

Probab=86.06  E-value=0.9  Score=38.27  Aligned_cols=52  Identities=25%  Similarity=0.376  Sum_probs=38.4

Q ss_pred             HhHHHHHHHHhhhhhhhhhhhhhhhhhhccCcchhHHH-hhhhhHHhhhhhhhH
Q 031724           71 KSAREAVNFALAGSLIGAVSTAGVAWKYSRSLHGTGLS-LAAGAVFGWTFGQEF  123 (154)
Q Consensus        71 K~~Rea~~fa~aGa~vGa~~tagva~kYSks~hGa~ls-~l~G~~~G~~~G~Ev  123 (154)
                      +.++.+..-|+.|++.||+.-++++ .|.-+.-|++++ -++|+++|.+.+.=+
T Consensus        77 ~~~~~~l~~G~gga~~Ga~~G~~~g-~~~~~~~g~~~G~GlaGalig~~ada~v  129 (215)
T PF05818_consen   77 NAAQSALAGGYGGALAGAATGAAIG-AYNSGSAGAAIGAGLAGALIGMIADAMV  129 (215)
T ss_pred             hHHHHHhhccchhHHHHhHHhhhhc-cccCCccchhhhhhHHHhHHHHHHhhhc
Confidence            4456666668888888888777777 787777777777 788888888877543

The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane

>PRK10510 putative outer membrane lipoprotein; Provisional

Probab=85.08  E-value=1.1  Score=36.46  Aligned_cols=27  Identities=41%  Similarity=0.545  Sum_probs=15.7

Q ss_pred             hhHHHhhhhhHHhhhhhhhHHHHHHHHhhcchhhhhH
Q 031724          104 GTGLSLAAGAVFGWTFGQEFANHYLQLYRMDTLAAQS  140 (154)
Q Consensus       104 Ga~ls~l~G~~~G~~~G~EvAnh~lqLYk~d~~~a~~  140 (154)
                      |++..-++|++.|...|          |.+|.++.++
T Consensus        62 ~a~~ga~~G~~~G~~~g----------~~~d~q~~~l   88 (219)
T PRK10510         62 GALIGAAAGAALGGGVG----------YYMDVQEAKL   88 (219)
T ss_pred             hhhhHhHHHhhhhhhhh----------hhhhhHHHHH
Confidence            55555556666666655          3446666554

>PRK11280 hypothetical protein; Provisional

Probab=84.16  E-value=1.5  Score=35.98  Aligned_cols=45  Identities=27%  Similarity=0.448  Sum_probs=34.5

Q ss_pred             hhhhhhhhhhhhhhhhhhccCcchhHHHhhhhhHHhhhhhhhHHHH
Q 031724           81 LAGSLIGAVSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFGQEFANH  126 (154)
Q Consensus        81 ~aGa~vGa~~tagva~kYSks~hGa~ls~l~G~~~G~~~G~EvAnh  126 (154)
                      ..|+++||+.-|.+.-...+. .|-.++.++|++.|...|.++.+-
T Consensus        65 ~~Gtv~Gav~Gg~~G~~iGgG-~Gr~~at~~Ga~~G~~~G~~i~~~  109 (170)
T PRK11280         65 IAGSVLGAVAGGVLGHQFGGG-RGKDVATVAGALGGGYAGNQIQGG  109 (170)
T ss_pred             chhHHHHHHHHHHhhhhccCC-CccHHHHHHHHHHHHHHHHHHHHH
Confidence            467788877777666666643 466689999999999999998763

>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A

Probab=80.11  E-value=2.7  Score=32.02  Aligned_cols=49  Identities=12%  Similarity=0.108  Sum_probs=33.7

Q ss_pred             hHHHHHHHHhhhhhhhhhhhhhhhhhhccCcchhHHHhhhhhHHhhhhh
Q 031724           72 SAREAVNFALAGSLIGAVSTAGVAWKYSRSLHGTGLSLAAGAVFGWTFG  120 (154)
Q Consensus        72 ~~Rea~~fa~aGa~vGa~~tagva~kYSks~hGa~ls~l~G~~~G~~~G  120 (154)
                      =.|+|...|++|.++=++.+--+.=+-.|+.|=++.+|++|.+++|.+=
T Consensus        39 CfR~slL~Gi~~G~~vG~~~fl~~~~~~~A~nwavgsF~l~s~~~we~C   87 (118)
T PF12597_consen   39 CFRDSLLYGIAGGFGVGGLRFLFTSNPRKAANWAVGSFFLGSLGSWEYC   87 (118)
T ss_pred             cHHHHHHHHHHHHHHHHhhhhcccCCCccchhhhhHHHHHHHHHHHHHH
Confidence            3688888887655443333333333556677889999999999999753

Proteins in this family are typically between 112 and 199 amino acids in length.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00