Citrus Sinensis ID: 031792

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150---
Protein Sequence
MKAETKAKIEGTVREILVKSDMTETTEFQIRKQASEKMGLDLSQPEYKAFVRHKSKEEQEEEEEEENEAVKNDNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKELPSAKGISLTEEQWSALRKNVSAIDTAVKKMQSRIM
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccEEEEcccEEEEEEEEccccEEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccEEccccccccccccccHHccccccccccccccccEEEEEcccEEEEEEEccccEEEEEEEEEEccccEEEEEEEEEEcHHHHHHHHHcHHHHHHHHHccHcccc
Coil and Loop (DISEMBL)
MKAETKAKIEGTVREILVKSDMTETTEFQIRKQASEkmgldlsqpeyKAFVRHkskeeqeeeEEEENeavkndnaeyddegnlIICQLNKKRRVTIQDFKGKTLVSIREYYTkggkelpsakgislTEEQWSALRKNVSAIDTAVKKMQSRIM
Flexible Loop (DISEMBL)
mkaetkakiegtvreilvksdmtettEFQIRKQasekmgldlsqpeYKAFVRHKskeeqeeeeeeeneavkndnaeyddeGNLIIcqlnkkrrvtiqdfkgktlvSIREYYTkggkelpsakgisLTEEQWSALRKNVSAIDTAVKKMQSRIM
Low Complexity Region (SEG)
MKAETKAKIEGTVREILVKSDMTETTEFQIRKQASEKMGLDLSQPEYKAFVRHKSKeeqeeeeeeeneAVKNDNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKELPSAKGISLTEEQWSALRKNVSAIDTAVKKMQSRIM
Disordered region (IsUnstruct)
********************************************************************************GNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGK*************************************
Disordered Region (DISOPRED)
***********TVREILVKSDMT**************************************************************CQLNKKRRVTIQDFKGKTLVSIREYYTK*****P***GISLTEEQWSALRKNVSAIDTAVKKMQS***
Disordered Region (DISEMBL)
MKAETKAKIEGTVREILVKSDMTETTEFQIRKQASEKMGLDLSQPEYKAFV*******************KNDNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKELPSAKGISLTEEQWSALRKNVSAIDTAVKKMQSRIM
Disordered Region (DISPRO)
****TKAKIEGTVREILVKSDMTETTEFQIRKQASEKMGLDLS*************************************GNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKELPSAKGISLTEEQWSALRKNVSAIDTAVKKMQ****
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKAETKAKIEGTVREILVKSDMTETTEFQIRKQASEKMGLDLSQPEYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKELPSAKGISLTEEQWSALRKNVSAIDTAVKKMQSRIM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	153	2.2.26 [Sep-21-2011]
O65155	165	RNA polymerase II transcr	yes	no	0.915	0.848	0.555	8e-41
O65154	107	RNA polymerase II transcr	no	no	0.633	0.906	0.339	5e-13
Q5R6D0	127	Activated RNA polymerase	yes	no	0.418	0.503	0.492	1e-11
Q4R947	127	Activated RNA polymerase	N/A	no	0.418	0.503	0.492	1e-11
P53999	127	Activated RNA polymerase	yes	no	0.418	0.503	0.492	1e-11
P11031	127	Activated RNA polymerase	yes	no	0.418	0.503	0.492	2e-11
Q63396	127	Activated RNA polymerase	yes	no	0.418	0.503	0.492	2e-11
Q5ZK63	126	Activated RNA polymerase	yes	no	0.418	0.507	0.476	5e-11
Q872F4	172	Putative RNA polymerase I	N/A	no	0.444	0.395	0.391	2e-07
P54000	292	RNA polymerase II transcr	yes	no	0.437	0.229	0.405	3e-07

>sp|O65155|KELP_ARATH RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana GN=KELP PE=1 SV=1

 Score =  165 bits (418), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 85/153 (55%), Positives = 115/153 (75%), Gaps = 13/153 (8%)

Query: 13  VREILVKSDMTETTEFQIRKQASEKMGLDLSQPEYKAFVR---------HKSKE----EQ 59
           V EIL +SDM E TEF++RK ASEK+ +DLS+  +KAFVR          +++E    + 
Sbjct: 13  VIEILSESDMKEITEFKVRKLASEKLAIDLSEKSHKAFVRSVVEKFLDEERAREYENSQV 72

Query: 60  EEEEEEENEAVKNDNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKELP 119
            +EEE+ ++     N E+DD+G+LIIC+L+ KRRVTIQ+FKGK+LVSIREYY K GKELP
Sbjct: 73  NKEEEDGDKDCGKGNKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDGKELP 132

Query: 120 SAKGISLTEEQWSALRKNVSAIDTAVKKMQSRI 152
           ++KGISLT+EQWS  +KN+ AI+ AVKKM+SR+
Sbjct: 133 TSKGISLTDEQWSTFKKNMPAIENAVKKMESRV 165

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. Binds single-stranded DNA.
Arabidopsis thaliana (taxid: 3702)

>sp|O65154|KIWI_ARATH RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana GN=KIWI PE=1 SV=1

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 60/103 (58%), Gaps = 6/103 (5%)

Query: 52  RHKSKEEQEEEEEEENEA------VKNDNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLV 105
           R K K+E     ++E+E       V     + D   ++++C ++K RRV+++++ GK  +
Sbjct: 4   RGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGKIWI 63

Query: 106 SIREYYTKGGKELPSAKGISLTEEQWSALRKNVSAIDTAVKKM 148
            IRE+Y K GK LP  KGISL+ +QW+ LR +   I+ A+  +
Sbjct: 64  DIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKALSDL 106

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. Binds single-stranded DNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5R6D0|TCP4_PONAB Activated RNA polymerase II transcriptional coactivator p15 OS=Pongo abelii GN=SUB1 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 1/65 (1%)

Query: 85  ICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKEL-PSAKGISLTEEQWSALRKNVSAIDT 143
           + Q+ K R V+++DFKGK L+ IREY+     E+ P  KGISL  EQWS L++ +S ID 
Sbjct: 63  MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDD 122

Query: 144 AVKKM 148
           AV+K+
Sbjct: 123 AVRKL 127

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. May be involved in stabilizing the multiprotein transcription complex. Binds single-stranded DNA. Also binds, in vitro, non-specifically to double-stranded DNA (ds DNA).

Pongo abelii (taxid: 9601)

>sp|Q4R947|TCP4_MACFA Activated RNA polymerase II transcriptional coactivator p15 OS=Macaca fascicularis GN=SUB1 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 1/65 (1%)

Query: 85  ICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKEL-PSAKGISLTEEQWSALRKNVSAIDT 143
           + Q+ K R V+++DFKGK L+ IREY+     E+ P  KGISL  EQWS L++ +S ID 
Sbjct: 63  MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDD 122

Query: 144 AVKKM 148
           AV+K+
Sbjct: 123 AVRKL 127

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. May be involved in stabilizing the multiprotein transcription complex. Binds single-stranded DNA. Also binds, in vitro, non-specifically to double-stranded DNA (ds DNA).

Macaca fascicularis (taxid: 9541)

>sp|P53999|TCP4_HUMAN Activated RNA polymerase II transcriptional coactivator p15 OS=Homo sapiens GN=SUB1 PE=1 SV=3

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 1/65 (1%)

Query: 85  ICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKEL-PSAKGISLTEEQWSALRKNVSAIDT 143
           + Q+ K R V+++DFKGK L+ IREY+     E+ P  KGISL  EQWS L++ +S ID 
Sbjct: 63  MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDD 122

Query: 144 AVKKM 148
           AV+K+
Sbjct: 123 AVRKL 127

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. May be involved in stabilizing the multiprotein transcription complex. Binds single-stranded DNA. Also binds, in vitro, non-specifically to double-stranded DNA (ds DNA).

Homo sapiens (taxid: 9606)

>sp|P11031|TCP4_MOUSE Activated RNA polymerase II transcriptional coactivator p15 OS=Mus musculus GN=Sub1 PE=1 SV=3

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 1/65 (1%)

Query: 85  ICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKEL-PSAKGISLTEEQWSALRKNVSAIDT 143
           + Q+ K R V+++DFKGK L+ IREY+     E+ P  KGISL  EQWS L++ +S ID 
Sbjct: 63  MFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQLKEQISDIDD 122

Query: 144 AVKKM 148
           AV+K+
Sbjct: 123 AVRKL 127

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. May be involved in stabilizing the multiprotein transcription complex. Binds single-stranded DNA. Also binds, in vitro, non-specifically to double-stranded DNA (ds DNA).

Mus musculus (taxid: 10090)

>sp|Q63396|TCP4_RAT Activated RNA polymerase II transcriptional coactivator p15 OS=Rattus norvegicus GN=Sub1 PE=2 SV=3

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 1/65 (1%)

Query: 85  ICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKEL-PSAKGISLTEEQWSALRKNVSAIDT 143
           + Q+ K R V+++DFKGK L+ IREY+     E+ P  KGISL  EQWS L++ +S ID 
Sbjct: 63  MFQIGKMRYVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQLKEQISDIDD 122

Query: 144 AVKKM 148
           AV+K+
Sbjct: 123 AVRKL 127

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. May be involved in stabilizing the multiprotein transcription complex. Binds single-stranded DNA. Also binds, in vitro, non-specifically to double-stranded DNA (ds DNA).

Rattus norvegicus (taxid: 10116)

>sp|Q5ZK63|TCP4_CHICK Activated RNA polymerase II transcriptional coactivator p15 OS=Gallus gallus GN=SUB1 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 45/65 (69%), Gaps = 1/65 (1%)

Query: 85  ICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKEL-PSAKGISLTEEQWSALRKNVSAIDT 143
           + Q+ K R V+++DFKGK L+ IREY+     E+ P  KGISL  EQW+ L++ +S ID 
Sbjct: 62  MFQIGKMRYVSVRDFKGKVLIDIREYWMDQEGEMKPGRKGISLNPEQWNQLKEQISDIDD 121

Query: 144 AVKKM 148
           AV+K+
Sbjct: 122 AVRKL 126

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. May be involved in stabilizing the multiprotein transcription complex. Binds single-stranded DNA. Also binds, in vitro, non-specifically to double-stranded DNA (ds DNA).

Gallus gallus (taxid: 9031)

>sp|Q872F4|TCP4_NEUCR Putative RNA polymerase II transcriptional coactivator OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=80A10.210 PE=3 SV=1

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 1/69 (1%)

Query: 78  DDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKELPSAKGISLTEEQWSALRKN 137
           D +GN    +L   RR++   F+  TLV+IREYY  GGK +P  KGISL+  Q+  L K 
Sbjct: 39  DQDGN-TFWELGNNRRISSSVFRNTTLVNIREYYDAGGKLMPGKKGISLSLAQYQNLLKV 97

Query: 138 VSAIDTAVK 146
           +  ++  ++
Sbjct: 98  IPQLNADLR 106

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. Binds single-stranded DNA.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|P54000|SUB1_YEAST RNA polymerase II transcriptional coactivator SUB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SUB1 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 2/69 (2%)

Query: 85  ICQLNKKRRVTIQDFKGKTLVSIREYY--TKGGKELPSAKGISLTEEQWSALRKNVSAID 142
           I  L K +RVT++ F+   L+ IREYY  +  G+  P  KGISLTE+ +  L K+   ID
Sbjct: 40  IFDLGKNKRVTVRQFRNINLIDIREYYLDSSTGEMKPGKKGISLTEDLYDELLKHRLNID 99

Query: 143 TAVKKMQSR 151
            A++++ S+
Sbjct: 100 EALRRLGSK 108

Plays a role in the release of TFIIB from the transcription complex during transcription initiation. Binds to TFIIB and specifically inhibits the formation of the TBP-TFIIB-promoter complexes.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
13699910	165	putative transcriptional coactivator [Br	0.993	0.921	0.606	3e-43
351725209	163	uncharacterized protein LOC100499671 [Gl	0.960	0.901	0.626	4e-43
297742357	142	unnamed protein product [Vitis vinifera]	0.928	1.0	0.588	6e-43
297813541	165	hypothetical protein ARALYDRAFT_489930 [	0.993	0.921	0.569	1e-42
351722649	166	uncharacterized protein LOC100305633 [Gl	0.967	0.891	0.586	2e-42
224058170	156	predicted protein [Populus trichocarpa]	1.0	0.980	0.564	5e-41
255537849	151	RNA polymerase II transcriptional coacti	0.986	1.0	0.572	5e-41
388517097	160	unknown [Lotus japonicus]	0.973	0.931	0.579	2e-40
449462521	158	PREDICTED: RNA polymerase II transcripti	0.993	0.962	0.534	3e-39
225426286	187	PREDICTED: RNA polymerase II transcripti	1.0	0.818	0.508	3e-39

>gi|13699910|dbj|BAB41214.1| putative transcriptional coactivator [Brassica rapa]

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 100/165 (60%), Positives = 124/165 (75%), Gaps = 13/165 (7%)

Query: 1   MKAETKAKIEGTVREILVKSDMTETTEFQIRKQASEKMGLDLSQPEYKAFVRHKSKEEQE 60
           M+ E+KAKIE TVREIL +SDMTE TEF++R  ASE++G+DLS   +KAFVR   K   E
Sbjct: 1   MEEESKAKIEETVREILKESDMTEMTEFKVRNLASERLGIDLSDKSHKAFVRGIVKSFLE 60

Query: 61  E-------------EEEEENEAVKNDNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSI 107
           E             EEEEE E  K  N E+DD+G+LIIC+L+ KRRVTIQ+F+GK+LVSI
Sbjct: 61  EVESKQQQQQDKEEEEEEEEERAKEGNKEFDDDGDLIICRLSDKRRVTIQEFRGKSLVSI 120

Query: 108 REYYTKGGKELPSAKGISLTEEQWSALRKNVSAIDTAVKKMQSRI 152
           REYY K GKELPS+KGISLT+EQWS  +KN+ AI+ AVKKM+SR+
Sbjct: 121 REYYKKDGKELPSSKGISLTDEQWSTFKKNIPAIEAAVKKMESRV 165

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725209|ref|NP_001238108.1| uncharacterized protein LOC100499671 [Glycine max] gi|255625681|gb|ACU13185.1| unknown [Glycine max]

 Score =  179 bits (453), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 99/158 (62%), Positives = 121/158 (76%), Gaps = 11/158 (6%)

Query: 4   ETKAKIEGTVREILVKSDMTETTEFQIRKQASEKMGLDLSQPEYKAFVRHKSK------- 56
           ETK +IE TVR IL +SDM E TE +IRKQASE +GLDLSQP +KAFV+   K       
Sbjct: 5   ETKGRIEETVRRILQESDMDEVTESKIRKQASEHLGLDLSQPYFKAFVKQVVKAFLQEEE 64

Query: 57  ----EEQEEEEEEENEAVKNDNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYT 112
               ++Q++E+EEE     +   EYDDEG+LIIC+L+ KRRVTIQDF+GKTLVSIREYY 
Sbjct: 65  QRQKQQQQDEDEEEELGGASKGKEYDDEGDLIICRLSDKRRVTIQDFRGKTLVSIREYYK 124

Query: 113 KGGKELPSAKGISLTEEQWSALRKNVSAIDTAVKKMQS 150
           K GKELP++KGISLTEEQWSA +KNV AI+ A+KKM+S
Sbjct: 125 KDGKELPTSKGISLTEEQWSAFKKNVPAIEKAIKKMES 162

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742357|emb|CBI34506.3| unnamed protein product [Vitis vinifera]

 Score =  178 bits (452), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 90/153 (58%), Positives = 116/153 (75%), Gaps = 11/153 (7%)

Query: 1   MKAETKAKIEGTVREILVKSDMTETTEFQIRKQASEKMGLDLSQPEYKAFVRHKSKEEQE 60
           M+ ET+ +IE TV EIL  +DM E TEF++RK AS+K+G++LS P+YK FVR        
Sbjct: 1   MEPETRRRIEKTVLEILKSADMDEMTEFKVRKLASDKLGINLSAPDYKRFVRQVV----- 55

Query: 61  EEEEEENEAVKNDNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKELPS 120
             E   +  VK    EYDD+G+LIIC+L+ +RRVTIQDF+GKTLVSIRE+Y K GKELPS
Sbjct: 56  --ETFLHSGVK----EYDDDGDLIICRLSDRRRVTIQDFRGKTLVSIREFYRKDGKELPS 109

Query: 121 AKGISLTEEQWSALRKNVSAIDTAVKKMQSRIM 153
           +KGISLT EQWSA +KNV AI+ A++KM+SR+M
Sbjct: 110 SKGISLTAEQWSAFKKNVPAIEEAIQKMESRLM 142

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813541|ref|XP_002874654.1| hypothetical protein ARALYDRAFT_489930 [Arabidopsis lyrata subsp. lyrata] gi|297320491|gb|EFH50913.1| hypothetical protein ARALYDRAFT_489930 [Arabidopsis lyrata subsp. lyrata]

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 94/165 (56%), Positives = 122/165 (73%), Gaps = 13/165 (7%)

Query: 1   MKAETKAKIEGTVREILVKSDMTETTEFQIRKQASEKMGLDLSQPEYKAFVR-------H 53
           M+ ETK KIE TVREIL +SDM E TEF++R+ ASE +G+DLS+  +KAFVR       H
Sbjct: 1   MEKETKEKIERTVREILNESDMKEMTEFKVRQLASEGLGIDLSEKSHKAFVRSVVEKFLH 60

Query: 54  KSKEEQEE------EEEEENEAVKNDNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSI 107
           + +    E      EEE+ ++     N E+DD+G+LII +L+ KRRVTIQ+FKGKTLVSI
Sbjct: 61  EERARDYEKSQVNKEEEDGDKDCGKGNKEFDDDGDLIIWRLSDKRRVTIQEFKGKTLVSI 120

Query: 108 REYYTKGGKELPSAKGISLTEEQWSALRKNVSAIDTAVKKMQSRI 152
           REYY K GKELP++KGISLT+EQWS  +KN+ AI+ AVKKM+SR+
Sbjct: 121 REYYKKDGKELPTSKGISLTDEQWSTFKKNIPAIENAVKKMESRV 165

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722649|ref|NP_001238275.1| uncharacterized protein LOC100305633 [Glycine max] gi|255626145|gb|ACU13417.1| unknown [Glycine max]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 95/162 (58%), Positives = 122/162 (75%), Gaps = 14/162 (8%)

Query: 3   AETKAKIEGTVREILVKSDMTETTEFQIRKQASEKMGLDLSQPEYKAFVRHKSK------ 56
           AETK +IE TVR +L +SDM E TE +IRKQASE++GLDLSQP +KAFV+   K      
Sbjct: 4   AETKGRIEETVRRVLQESDMDEVTESKIRKQASEQLGLDLSQPHFKAFVKQVVKAFLQEE 63

Query: 57  --------EEQEEEEEEENEAVKNDNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSIR 108
                   +++++++EEE +   +   EYDDEG+LIIC+L+ KRRV IQDF+GKTLVSIR
Sbjct: 64  EQRQQQQQQDEDDDDEEEEQGGVSKGKEYDDEGDLIICRLSDKRRVPIQDFRGKTLVSIR 123

Query: 109 EYYTKGGKELPSAKGISLTEEQWSALRKNVSAIDTAVKKMQS 150
           EYY K GKELP++KGISLTEEQWS  +KNV AI+ A+KKM+S
Sbjct: 124 EYYKKDGKELPTSKGISLTEEQWSTFKKNVPAIEKAIKKMES 165

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058170|ref|XP_002299459.1| predicted protein [Populus trichocarpa] gi|222846717|gb|EEE84264.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (435), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 88/156 (56%), Positives = 112/156 (71%), Gaps = 3/156 (1%)

Query: 1   MKAETKAKIEGTVREILVKSDMTETTEFQIRKQASEKMGLDLSQPEYKAFVRHKSK---E 57
           M+ + + +I+ TVREIL +SDM  TTE QIR+ AS K+ LDL + EYK +VRH      E
Sbjct: 1   MEPKLRMQIKETVREILEESDMETTTEHQIRRLASNKLDLDLDKSEYKTYVRHVVNSFLE 60

Query: 58  EQEEEEEEENEAVKNDNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKE 117
           EQ+ ++E++ E       EYDDEGNL+IC+L+ KR+VTIQ+F+G  LVSIREYY  GG E
Sbjct: 61  EQKAKQEDDEEETGKQEQEYDDEGNLVICRLSAKRKVTIQNFRGANLVSIREYYYDGGAE 120

Query: 118 LPSAKGISLTEEQWSALRKNVSAIDTAVKKMQSRIM 153
            P+ KGISL EEQWS LRKN+ AI+ AVK MQ R M
Sbjct: 121 RPTTKGISLNEEQWSTLRKNIPAIEKAVKDMQDRDM 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537849|ref|XP_002509991.1| RNA polymerase II transcriptional coactivator kelp, putative [Ricinus communis] gi|223549890|gb|EEF51378.1| RNA polymerase II transcriptional coactivator kelp, putative [Ricinus communis]

 Score =  172 bits (435), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 87/152 (57%), Positives = 118/152 (77%), Gaps = 1/152 (0%)

Query: 1   MKAETKAKIEGTVREILVKSDMTETTEFQIRKQASEKMGLDLSQPEYKAFVRHKSKEEQE 60
           M+ + K KIE TVREIL +SDM  TTE QIRK AS K+ LDL++ EYKAFVRH      E
Sbjct: 1   MEPKLKIKIEETVREILEESDMETTTENQIRKIASRKLELDLNKSEYKAFVRHVVNNFLE 60

Query: 61  EEEEEENEAVKNDNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKELPS 120
           E+  +E +   +   E+DD+G+LI+C+L++KR+VTIQ+F+G TLVSIRE+Y K GKELP+
Sbjct: 61  EQNAKEEQG-HSKEPEFDDDGDLIVCRLSEKRKVTIQNFRGTTLVSIREFYKKDGKELPT 119

Query: 121 AKGISLTEEQWSALRKNVSAIDTAVKKMQSRI 152
           +KGISL EEQWSAL+KN+ AI+ A+++M+ R+
Sbjct: 120 SKGISLKEEQWSALKKNIPAIEEAIREMEDRL 151

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517097|gb|AFK46610.1| unknown [Lotus japonicus]

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 91/157 (57%), Positives = 124/157 (78%), Gaps = 8/157 (5%)

Query: 3   AETKAKIEGTVREILVKSDMTETTEFQIRKQASEKMGLDLSQPEYKAFVRH-------KS 55
            ETKA+IE  VR+IL +S+M E TE +IRKQAS ++GLDLS P +KAFV+        + 
Sbjct: 5   PETKARIEEAVRKILEESNMDEVTESKIRKQASTELGLDLSVPPFKAFVKQVVQAFLEEK 64

Query: 56  KEEQEEEEEEENEAVKNDNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGG 115
           +++ EE+++EE   V  D  E+DD+G+LIIC+L++KR+VTIQDF+GKTLVSIREYY K G
Sbjct: 65  QQQLEEQQQEEGGGVTQDK-EFDDDGDLIICKLSEKRKVTIQDFRGKTLVSIREYYRKDG 123

Query: 116 KELPSAKGISLTEEQWSALRKNVSAIDTAVKKMQSRI 152
           K+LP++KGISLTEEQWS  +KNV A++ A++KM+SRI
Sbjct: 124 KDLPTSKGISLTEEQWSTFKKNVPAVEKAIEKMESRI 160

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462521|ref|XP_004148989.1| PREDICTED: RNA polymerase II transcriptional coactivator KELP-like [Cucumis sativus] gi|449506203|ref|XP_004162681.1| PREDICTED: RNA polymerase II transcriptional coactivator KELP-like [Cucumis sativus]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 85/159 (53%), Positives = 114/159 (71%), Gaps = 7/159 (4%)

Query: 1   MKAETKAKIEGTVREILVKSDMTETTEFQIRKQASEKMGLDLSQPEYKAFVRH------K 54
           M ++ + +IE  VR IL  SDM E TE +IR  AS+ + LDLS+  YK+ VR       +
Sbjct: 1   MDSQLQRRIEEAVRAILESSDMDEMTESKIRALASKDLHLDLSKSPYKSLVRTVVESFLQ 60

Query: 55  SKEEQEEEEEEENEAVKNDNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKG 114
            + EQ  E++ E+ +   +  EYDD+G+LI+C L+ KR+VTIQDF+GKTLVSIRE+Y K 
Sbjct: 61  ERSEQHPEDQPEDASAAKEK-EYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKD 119

Query: 115 GKELPSAKGISLTEEQWSALRKNVSAIDTAVKKMQSRIM 153
           GK+LP+AKGISLTEEQWS  +KNV AI+ A+K MQS+IM
Sbjct: 120 GKDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQSQIM 158

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426286|ref|XP_002266998.1| PREDICTED: RNA polymerase II transcriptional coactivator KELP-like [Vitis vinifera]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/187 (50%), Positives = 124/187 (66%), Gaps = 34/187 (18%)

Query: 1   MKAETKAKIEGTVREILVKSDMTETTEFQIRKQASEKMGLDLSQPEYKAFVRH------- 53
           M+ ET+ +IE TV EIL  +DM E TEF++RK AS+K+G++LS P+YK FVR        
Sbjct: 1   MEPETRRRIEKTVLEILKSADMDEMTEFKVRKLASDKLGINLSAPDYKRFVRQVVETFLQ 60

Query: 54  ---------------------------KSKEEQEEEEEEENEAVKNDNAEYDDEGNLIIC 86
                                      +  EE+EEEE EE+    +   EYDD+G+LIIC
Sbjct: 61  STEEPGREPEPEPEPDRKKANTEAAEREPTEEEEEEEVEEDRGKSSGVKEYDDDGDLIIC 120

Query: 87  QLNKKRRVTIQDFKGKTLVSIREYYTKGGKELPSAKGISLTEEQWSALRKNVSAIDTAVK 146
           +L+ +RRVTIQDF+GKTLVSIRE+Y K GKELPS+KGISLT EQWSA +KNV AI+ A++
Sbjct: 121 RLSDRRRVTIQDFRGKTLVSIREFYRKDGKELPSSKGISLTAEQWSAFKKNVPAIEEAIQ 180

Query: 147 KMQSRIM 153
           KM+SR+M
Sbjct: 181 KMESRLM 187

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
TAIR|locus:2123416	165	KELP [Arabidopsis thaliana (ta	0.993	0.921	0.551	3.7e-39
TAIR|locus:2134618	488	AT4G00980 [Arabidopsis thalian	0.954	0.299	0.325	3.9e-15
ASPGD|ASPL0000000236	168	AN5806 [Emericella nidulans (t	0.392	0.357	0.533	3.9e-14
TAIR|locus:2184747	107	KIWI [Arabidopsis thaliana (ta	0.464	0.663	0.394	5.6e-13
UNIPROTKB|A7YWC6	127	SUB1 "Uncharacterized protein"	0.483	0.582	0.455	1.9e-12
UNIPROTKB|E2R6X3	127	SUB1 "Uncharacterized protein"	0.483	0.582	0.455	3.1e-12
UNIPROTKB|F6Y016	144	LOC479283 "Uncharacterized pro	0.483	0.513	0.455	3.1e-12
UNIPROTKB|J9P938	132	J9P938 "Uncharacterized protei	0.483	0.560	0.455	3.1e-12
UNIPROTKB|P53999	127	SUB1 "Activated RNA polymerase	0.483	0.582	0.455	3.1e-12
UNIPROTKB|I3LQI3	134	SUB1 "Uncharacterized protein"	0.483	0.552	0.455	3.1e-12

TAIR|locus:2123416 KELP [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 91/165 (55%), Positives = 115/165 (69%)

Query:     1 MKAETKAKIEGTVREILVKSDMTETTEFQIRKQASEKMGLDLSQPEYKAFVR---HKSKX 57
             M+ ETK KIE TV EIL +SDM E TEF++RK ASEK+ +DLS+  +KAFVR    K   
Sbjct:     1 MEKETKEKIEKTVIEILSESDMKEITEFKVRKLASEKLAIDLSEKSHKAFVRSVVEKFLD 60

Query:    58 XXXXXXXXXXXAVKND----------NAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSI 107
                          K +          N E+DD+G+LIIC+L+ KRRVTIQ+FKGK+LVSI
Sbjct:    61 EERAREYENSQVNKEEEDGDKDCGKGNKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSI 120

Query:   108 REYYTKGGKELPSAKGISLTEEQWSALRKNVSAIDTAVKKMQSRI 152
             REYY K GKELP++KGISLT+EQWS  +KN+ AI+ AVKKM+SR+
Sbjct:   121 REYYKKDGKELPTSKGISLTDEQWSTFKKNMPAIENAVKKMESRV 165

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003713 "transcription coactivator activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2134618 AT4G00980 [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 3.9e-15, P = 3.9e-15
 Identities = 53/163 (32%), Positives = 84/163 (51%)

Query:     1 MKAETKAKIEGTVREILVKSDMTETTEFQIRKQASEKMGLDLSQPEYKAFVRHKSKXXXX 60
             M+     KIE TV+ IL +SDM + TEF++R  AS K+G+DLS   +K  VR   +    
Sbjct:    12 MEIVATQKIEETVKSILSESDMDQMTEFKLRLDASAKLGIDLSGTNHKKLVRDVLEVFLL 71

Query:    61 XXXXXXX-----XAVKNDN-----AEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSIREY 110
                            KN+      A    E    IC+L++K+  T+Q ++G+  +SI   
Sbjct:    72 STPGEALVPETVAPAKNETVSVAAASVGGEDERFICKLSEKQNATVQRYRGQPFLSI--- 128

Query:   111 YTKGGKELPSA-KGISLTEEQWSALRKNVSAIDTAVKKMQSRI 152
                G +E   A +G  L+  QWS ++KN +AI+  +K+ QS++
Sbjct:   129 ---GSQEHGKAFRGAHLSTNQWSVIKKNFAAIEDGIKQCQSKL 168

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

ASPGD|ASPL0000000236 AN5806 [Emericella nidulans (taxid:162425)]

 Score = 159 (61.0 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
 Identities = 32/60 (53%), Positives = 43/60 (71%)

Query:    75 AEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKELPSAKGISLTEEQWSAL 134
             A  +D    I  +++K RRVTI  F+GKT+V+IREYY K G+ELP  KGISL  +Q+S+L
Sbjct:    46 ARKEDSNGDIYWEISKMRRVTISSFRGKTMVNIREYYEKDGEELPGKKGISLPIDQFSSL 105

GO:0005575 "cellular_component" evidence=ND

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

TAIR|locus:2184747 KIWI [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 28/71 (39%), Positives = 48/71 (67%)

Query:    78 DDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKELPSAKGISLTEEQWSALRKN 137
             D   ++++C ++K RRV+++++ GK  + IRE+Y K GK LP  KGISL+ +QW+ LR +
Sbjct:    36 DQSDDIVVCNISKNRRVSVRNWNGKIWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNH 95

Query:   138 VSAIDTAVKKM 148
                I+ A+  +
Sbjct:    96 AEDIEKALSDL 106

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003713 "transcription coactivator activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|A7YWC6 SUB1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 36/79 (45%), Positives = 51/79 (64%)

Query:    71 KNDNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKEL-PSAKGISLTEE 129
             K  ++  DD  N+   Q+ K R V+++DFKGK L+ IREY+     E+ P  KGISL  E
Sbjct:    53 KQSSSSRDD--NMF--QIGKMRYVSVRDFKGKVLIDIREYWMDAEGEMKPGRKGISLNPE 108

Query:   130 QWSALRKNVSAIDTAVKKM 148
             QWS L++ +S ID AV+K+
Sbjct:   109 QWSQLKEQISDIDDAVRKL 127

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

UNIPROTKB|E2R6X3 SUB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 36/79 (45%), Positives = 51/79 (64%)

Query:    71 KNDNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKEL-PSAKGISLTEE 129
             K  ++  DD  N+   Q+ K R V+++DFKGK L+ IREY+     E+ P  KGISL  E
Sbjct:    53 KQSSSSRDD--NMF--QIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPE 108

Query:   130 QWSALRKNVSAIDTAVKKM 148
             QWS L++ +S ID AV+K+
Sbjct:   109 QWSQLKEQISDIDDAVRKL 127

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

UNIPROTKB|F6Y016 LOC479283 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 36/79 (45%), Positives = 51/79 (64%)

Query:    71 KNDNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKEL-PSAKGISLTEE 129
             K  ++  DD  N+   Q+ K R V+++DFKGK L+ IREY+     E+ P  KGISL  E
Sbjct:    70 KQSSSSRDD--NMF--QIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPE 125

Query:   130 QWSALRKNVSAIDTAVKKM 148
             QWS L++ +S ID AV+K+
Sbjct:   126 QWSQLKEQISDIDDAVRKL 144

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|J9P938 J9P938 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 36/79 (45%), Positives = 51/79 (64%)

Query:    71 KNDNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKEL-PSAKGISLTEE 129
             K  ++  DD  N+   Q+ K R V+++DFKGK L+ IREY+     E+ P  KGISL  E
Sbjct:    58 KQSSSSRDD--NMF--QIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPE 113

Query:   130 QWSALRKNVSAIDTAVKKM 148
             QWS L++ +S ID AV+K+
Sbjct:   114 QWSQLKEQISDIDDAVRKL 132

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|P53999 SUB1 "Activated RNA polymerase II transcriptional coactivator p15" [Homo sapiens (taxid:9606)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 36/79 (45%), Positives = 51/79 (64%)

Query:    71 KNDNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKEL-PSAKGISLTEE 129
             K  ++  DD  N+   Q+ K R V+++DFKGK L+ IREY+     E+ P  KGISL  E
Sbjct:    53 KQSSSSRDD--NMF--QIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPE 108

Query:   130 QWSALRKNVSAIDTAVKKM 148
             QWS L++ +S ID AV+K+
Sbjct:   109 QWSQLKEQISDIDDAVRKL 127

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IDA

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0003697 "single-stranded DNA binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|I3LQI3 SUB1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 36/79 (45%), Positives = 51/79 (64%)

Query:    71 KNDNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKEL-PSAKGISLTEE 129
             K  ++  DD  N+   Q+ K R V+++DFKGK L+ IREY+     E+ P  KGISL  E
Sbjct:    60 KQSSSSRDD--NMF--QIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPE 115

Query:   130 QWSALRKNVSAIDTAVKKM 148
             QWS L++ +S ID AV+K+
Sbjct:   116 QWSQLKEQISDIDDAVRKL 134

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O65155	KELP_ARATH	No assigned EC number	0.5555	0.9150	0.8484	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	153
pfam02229	81	pfam02229, PC4, Transcriptional Coactivator p15 (P	6e-28
pfam08766	54	pfam08766, DEK_C, DEK C terminal domain	4e-08

>gnl|CDD|216939 pfam02229, PC4, Transcriptional Coactivator p15 (PC4)

 Score = 98.5 bits (246), Expect = 6e-28
 Identities = 40/82 (48%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query: 64  EEENEAVKNDNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKELPSAKG 123
             +    +  +   D EG+ I  +L+K RRVT+ +FKGKTLV IREYY K G+ LP  KG
Sbjct: 1   PVKKSKSEESSKGSDAEGD-IFFELSKNRRVTVSEFKGKTLVDIREYYEKDGEMLPGKKG 59

Query: 124 ISLTEEQWSALRKNVSAIDTAV 145
           ISLT EQW+AL++++  ID A+
Sbjct: 60  ISLTLEQWNALKEHIPEIDDAI 81

p15 has a bipartite structure composed of an amino-terminal regulatory domain and a carboxy-terminal cryptic DNA-binding domain. The DNA-binding activity of the carboxy-terminal is disguised by the amino-terminal p15 domain. Activity is controlled by protein kinases that target the regulatory domain. Length = 81

>gnl|CDD|204056 pfam08766, DEK_C, DEK C terminal domain

 Score = 46.7 bits (112), Expect = 4e-08
 Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 2/49 (4%)

Query: 5  TKAKIEGTVREILVKSDMTETTEFQIRKQASEKMGLDLSQPEYKAFVRH 53
          T  +I+  +REIL ++D+   T+ QIRK+   ++G+DLS  E KAF++ 
Sbjct: 1  TDEEIKEEIREILREADLETVTKKQIRKELEARLGVDLS--ERKAFIKD 47

DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family. This domain is also found in chitin synthase proteins and in protein phosphatases. Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	153
KOG2712	108	consensus Transcriptional coactivator [Transcripti	99.97
PF02229	56	PC4: Transcriptional Coactivator p15 (PC4); InterP	99.89
PF08766	54	DEK_C: DEK C terminal domain; InterPro: IPR014876	99.42
KOG2266	594	consensus Chromatin-associated protein Dek and rel	98.76
COG4443	72	Uncharacterized protein conserved in bacteria [Fun	89.85

>KOG2712 consensus Transcriptional coactivator [Transcription]

Probab=99.97  E-value=7.6e-32  Score=201.07  Aligned_cols=79  Identities=51%  Similarity=0.826  Sum_probs=72.2

Q ss_pred             CCcccCCCCCeEEEEeCCceeEEEeeeCCceeEeeeeEEecCCcccCCCcccccCHHHHHHHHHhHHHHHHHHHHhhcc
Q 031792           73 DNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKELPSAKGISLTEEQWSALRKNVSAIDTAVKKMQSR  151 (153)
Q Consensus        73 ~~~~~d~~gd~~~~~Ls~~rrvtV~~fkG~~~VdIRE~Y~kdG~~~P~kKGIsLt~eqw~~l~~~~~~I~~ai~~l~~~  151 (153)
                      .++.-++.++..+|+|+++|||||++|+|+.||||||||.++|+++||+||||||.+||..|++++++|++||..|++.
T Consensus        30 ~k~~d~~s~~~~i~~l~~~RrVtV~eFkGk~~VdIREyY~kdG~mlPgkKGISLs~~qW~~Lk~~~~eId~Al~~l~s~  108 (108)
T KOG2712|consen   30 EKPKDDDSEDDNIFNLGKNRRVTVREFKGKILVDIREYYVKDGKMLPGKKGISLSLEQWSKLKEHIEEIDKALRKLSSG  108 (108)
T ss_pred             cCcccCCcCccceeecCCceEEehhhcCCceEEehhHhhhccCccccCccccccCHHHHHHHHHHHHHHHHHHHHhccC
Confidence            3344446667777999999999999999999999999999999999999999999999999999999999999999873

>PF02229 PC4: Transcriptional Coactivator p15 (PC4); InterPro: IPR003173 p15 has a bipartite structure composed of an amino-terminal regulatory domain and a carboxy-terminal cryptic DNA-binding domain []

Probab=99.89  E-value=3.4e-24  Score=143.15  Aligned_cols=55  Identities=53%  Similarity=0.900  Sum_probs=49.3

Q ss_pred             EEEEeCCceeEEEeeeCCceeEeeeeEEec-CCcccCCCcccccCHHHHHHHHHhH
Q 031792           84 IICQLNKKRRVTIQDFKGKTLVSIREYYTK-GGKELPSAKGISLTEEQWSALRKNV  138 (153)
Q Consensus        84 ~~~~Ls~~rrvtV~~fkG~~~VdIRE~Y~k-dG~~~P~kKGIsLt~eqw~~l~~~~  138 (153)
                      ++|.++.++||+|++|+|++|||||+||.+ +|+|+||+|||||+++||..|++++
T Consensus         1 ~~~~~~~~~rv~v~~fkG~~~vdIRe~y~~~~g~~~P~kKGIsL~~~q~~~l~~~l   56 (56)
T PF02229_consen    1 IIKNLGEKRRVSVSEFKGKPYVDIREWYEKKDGEWKPTKKGISLTPEQWKELKEAL   56 (56)
T ss_dssp             -EETTEEEEEEEEEEETTSEEEEEEEEETTSSS-EEEEEEEEEE-HHHHHHHHHH-
T ss_pred             CcccCCCeEEEEEEEeCCeEEEEEEeeEEcCCCcCcCcCCEEEcCHHHHHHHHhhC
Confidence            468999999999999999999999999997 8999999999999999999999864

The DNA-binding activity of the carboxy-terminal is disguised by the amino-terminal p15 domain. Activity is controlled by protein kinases that target the regulatory domain.; GO: 0003677 DNA binding, 0003713 transcription coactivator activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3PM7_B 2LTD_A 2LTT_B 3OBH_B 2L3A_B 2PHE_B 1PCF_B 2C62_B.

>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease

Probab=99.42  E-value=2.9e-13  Score=89.20  Aligned_cols=51  Identities=37%  Similarity=0.596  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHhhhcCCcchhhHHHHHHHHhHHcCCCCCChhHHHHHhhhhhh
Q 031792            5 TKAKIEGTVREILVKSDMTETTEFQIRKQASEKMGLDLSQPEYKAFVRHKSKE   57 (153)
Q Consensus         5 sk~~i~~~V~eILk~aDl~t~Te~~vR~~l~~~lgvdLs~~~~K~~Vr~~i~~   57 (153)
                      |.++|+..|++||++|||+++|.++||++|+++||+||++  ||.||+++|..
T Consensus         1 td~~i~~~i~~iL~~~dl~~vT~k~vr~~Le~~~~~dL~~--~K~~I~~~I~~   51 (54)
T PF08766_consen    1 TDEEIREAIREILREADLDTVTKKQVREQLEERFGVDLSS--RKKFIKELIDE   51 (54)
T ss_dssp             -HHHHHHHHHHHHTTS-GGG--HHHHHHHHHHH-SS--SH--HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHhHhhHHHHHHHHHHHHCCCcHH--HHHHHHHHHHH
Confidence            5679999999999999999999999999999999999997  99999998753

This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.

>KOG2266 consensus Chromatin-associated protein Dek and related proteins, contains SAP DNA binding domain [Chromatin structure and dynamics]

Probab=98.76  E-value=9e-09  Score=93.90  Aligned_cols=53  Identities=28%  Similarity=0.418  Sum_probs=51.1

Q ss_pred             hHHHHHHHHHHHHhhhcCCcchhhHHHHHHHHhHHcCCCCCChhHHHHHhhhhhh
Q 031792            3 AETKAKIEGTVREILVKSDMTETTEFQIRKQASEKMGLDLSQPEYKAFVRHKSKE   57 (153)
Q Consensus         3 ~~sk~~i~~~V~eILk~aDl~t~Te~~vR~~l~~~lgvdLs~~~~K~~Vr~~i~~   57 (153)
                      .||..+|+.+|.+||+.+||+++|...|.++|..+|++||++  ||.||..+|++
T Consensus       519 ePTdeelk~~V~kILk~vdfntaTm~dIlKkl~~~f~~dLt~--rK~~IK~~Ike  571 (594)
T KOG2266|consen  519 EPTDEELKEVVKKILKEVDFNTATMKDILKKLYAKFPIDLTH--RKDFIKDTIKE  571 (594)
T ss_pred             CCcHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHhCCccccc--chHHHHHHHHH
Confidence            589999999999999999999999999999999999999999  99999999865

>COG4443 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.85  E-value=0.22  Score=35.04  Aligned_cols=39  Identities=31%  Similarity=0.555  Sum_probs=30.7

Q ss_pred             eeCCce-eEeeeeEEecCCcccCCCcccccCHHHHHHHHHhHH
Q 031792           98 DFKGKT-LVSIREYYTKGGKELPSAKGISLTEEQWSALRKNVS  139 (153)
Q Consensus        98 ~fkG~~-~VdIRE~Y~kdG~~~P~kKGIsLt~eqw~~l~~~~~  139 (153)
                      .|+|.+ -.|||.|-.+..++   -|||+||.+++..|++.+.
T Consensus        31 SwNg~~~KyDiR~Wspdh~KM---GKGiTLt~eE~~~l~d~l~   70 (72)
T COG4443          31 SWNGRPPKYDIRAWSPDHSKM---GKGITLTNEEFKALKDLLN   70 (72)
T ss_pred             ccCCCCCcCcccccCcchhhh---cCceeecHHHHHHHHHHHh
Confidence            588876 78999997654333   3899999999999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	153
1pcf_A	66	Human Transcriptional Coactivator Pc4 C-Terminal Do		1e-12
4agh_A	158	Structural Features Of Ssdna Binding Protein Mosub1		4e-09

>pdb|1PCF|A Chain A, Human Transcriptional Coactivator Pc4 C-Terminal Domain Length = 66

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 85  ICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKEL-PSAKGISLTEEQWSALRKNVSAIDT 143
           + Q+ K R V+++DFKGK L+ IREY+     E+ P  KGISL  EQWS L++ +S ID 
Sbjct: 2   MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDD 61
Query: 144 AVKKM 148
           AV+K+
Sbjct: 62  AVRKL 66

>pdb|4AGH|A Chain A, Structural Features Of Ssdna Binding Protein Mosub1 From Magnaporthe Oryzae Length = 158

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 74  NAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKELPSAKGISLTEEQWSA 133
            ++ D EGN    +++ KRRV I  FK    ++IREYY  GG+  P  KGI LT +Q++A
Sbjct: 38  GSQVDAEGNPF-WEISDKRRVGISQFKKMDFINIREYYEAGGEMKPGKKGIGLTVDQYTA 96
Query: 134 LRKNVSAIDTAVK 146
             K + AI+  ++
Sbjct: 97  FLKAIPAINAELR 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	153
1pcf_A	66	P15, transcriptional coactivator PC4; transcriptio	9e-23

>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A Length = 66

 Score = 84.5 bits (209), Expect = 9e-23
 Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 1/65 (1%)

Query: 85  ICQLNKKRRVTIQDFKGKTLVSIREYYT-KGGKELPSAKGISLTEEQWSALRKNVSAIDT 143
           + Q+ K R V+++DFKGK L+ IREY+    G+  P  KGISL  EQWS L++ +S ID 
Sbjct: 2   MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDD 61

Query: 144 AVKKM 148
           AV+K+
Sbjct: 62  AVRKL 66

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	153
1pcf_A	66	P15, transcriptional coactivator PC4; transcriptio	99.97
4agh_A	158	Mosub1, transcription cofactor; ssDNA binding prot	99.96
1q1v_A	70	DEK protein; winged-helix motif, DNA binding prote	99.44
4g06_A	79	Uncharacterized protein; structural genomics, PSI-	93.88
2l3a_A	82	Uncharacterized protein; structural genomics, PSI-	93.43
3pm7_A	80	Uncharacterized protein; structural genomics, PSI-	93.37
2ltd_A	80	Uncharacterized protein YDBC; structural genomics,	85.81

>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A

Probab=99.97  E-value=2.5e-31  Score=182.83  Aligned_cols=64  Identities=50%  Similarity=0.871  Sum_probs=61.8

Q ss_pred             EEEeCCceeEEEeeeCCceeEeeeeEE-ecCCcccCCCcccccCHHHHHHHHHhHHHHHHHHHHh
Q 031792           85 ICQLNKKRRVTIQDFKGKTLVSIREYY-TKGGKELPSAKGISLTEEQWSALRKNVSAIDTAVKKM  148 (153)
Q Consensus        85 ~~~Ls~~rrvtV~~fkG~~~VdIRE~Y-~kdG~~~P~kKGIsLt~eqw~~l~~~~~~I~~ai~~l  148 (153)
                      +|+||++|||+|++|||++|||||||| .+||+++|||||||||++||+.|++++++|++||++|
T Consensus         2 ~~~ls~~rrvtv~~fkG~~~VdIRe~Y~~kdG~~~PgkKGIsL~~~qw~~l~~~~~~I~~ai~~~   66 (66)
T 1pcf_A            2 MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL   66 (66)
T ss_dssp             EEEEETTEEEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHC
T ss_pred             eEECCCCeEEEEEEeCCCEEEEEEEEEECCCCcCCCCccccccCHHHHHHHHHHHHHHHHHHHhC
Confidence            599999999999999999999999999 6799999999999999999999999999999999875

>4agh_A Mosub1, transcription cofactor; ssDNA binding protein; 1.79A {Magnaporthe oryzae}

Probab=99.96  E-value=4e-30  Score=202.32  Aligned_cols=78  Identities=37%  Similarity=0.651  Sum_probs=72.5

Q ss_pred             CCcccCCCCCeEEEEeCCceeEEEeeeCCceeEeeeeEEecCCcccCCCcccccCHHHHHHHHHhHHHHHHHHHHhhcc
Q 031792           73 DNAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKELPSAKGISLTEEQWSALRKNVSAIDTAVKKMQSR  151 (153)
Q Consensus        73 ~~~~~d~~gd~~~~~Ls~~rrvtV~~fkG~~~VdIRE~Y~kdG~~~P~kKGIsLt~eqw~~l~~~~~~I~~ai~~l~~~  151 (153)
                      +....|++|+.+ |+||++|||+|++|||++||||||||+++|+|+|||||||||++||..|+++++.|++||+.++..
T Consensus        37 ~~~~~d~~g~~~-~~Ls~~rrvtV~~fkG~~~vdIREyY~k~G~~~PgkKGISLs~~qw~~L~~~~~~I~~ai~~~g~~  114 (158)
T 4agh_A           37 GGSQVDAEGNPF-WEISDKRRVGISQFKKMDFINIREYYEAGGEMKPGKKGIGLTVDQYTAFLKAIPAINAELRSRGHD  114 (158)
T ss_dssp             -CCEECTTSCEE-EESSSSEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCccCCCCCEe-EEcCCCcEEEEEeeCCCEEEEeEeEEcCCCcCCCcccceecCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            334568888886 999999999999999999999999999999999999999999999999999999999999999864

>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1

Probab=99.44  E-value=8.3e-14  Score=96.16  Aligned_cols=53  Identities=28%  Similarity=0.456  Sum_probs=50.4

Q ss_pred             hHHHHHHHHHHHHhhhcCCcchhhHHHHHHHHhHHc-CCCCCChhHHHHHhhhhhh
Q 031792            3 AETKAKIEGTVREILVKSDMTETTEFQIRKQASEKM-GLDLSQPEYKAFVRHKSKE   57 (153)
Q Consensus         3 ~~sk~~i~~~V~eILk~aDl~t~Te~~vR~~l~~~l-gvdLs~~~~K~~Vr~~i~~   57 (153)
                      .||..+|.+.|++||++|||+++|.++||++|+++| |+|||+  ||+||+++|..
T Consensus        11 ~Psd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs~--kK~~I~~~I~~   64 (70)
T 1q1v_A           11 PPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTE--RKDFIKTTVKE   64 (70)
T ss_dssp             CCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCSH--HHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCCCChH--HHHHHHHHHHH
Confidence            588999999999999999999999999999999999 999997  99999999854

>4g06_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: DT; 2.90A {Streptococcus pneumoniae}

Probab=93.88  E-value=0.15  Score=35.68  Aligned_cols=45  Identities=20%  Similarity=0.405  Sum_probs=34.8

Q ss_pred             eeEEEeeeCCce-eEeeeeEEecCCcccCCCcccccCHHHHHHHHHhHH
Q 031792           92 RRVTIQDFKGKT-LVSIREYYTKGGKELPSAKGISLTEEQWSALRKNVS  139 (153)
Q Consensus        92 rrvtV~~fkG~~-~VdIRE~Y~kdG~~~P~kKGIsLt~eqw~~l~~~~~  139 (153)
                      +-+..-.|+|.. -.|||.|=.+.  .+. .|||+||.++...|++.+.
T Consensus        32 KELNlVSWN~~~pKyDIR~W~pdh--~kM-gKGITLT~eE~~~L~~~L~   77 (79)
T 4g06_A           32 KEINRVSFNGAPAKFDIRAWSPDH--TKM-GKGITLSNEEFQTMVDAFK   77 (79)
T ss_dssp             EEEEEEEETTCCCEEEEEEECTTS--SCB-CCCEEECHHHHHHHHHHHH
T ss_pred             EEEEEEEeCCCCCCccccccCccc--ccc-cCccccCHHHHHHHHHHHc
Confidence            467778898765 89999985443  233 3999999999999998764

>2l3a_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Streptococcus pneumoniae} PDB: 3obh_A*

Probab=93.43  E-value=0.19  Score=35.39  Aligned_cols=46  Identities=22%  Similarity=0.434  Sum_probs=34.1

Q ss_pred             ceeEEEeeeCCc-eeEeeeeEEecCCcccCCCcccccCHHHHHHHHHhHH
Q 031792           91 KRRVTIQDFKGK-TLVSIREYYTKGGKELPSAKGISLTEEQWSALRKNVS  139 (153)
Q Consensus        91 ~rrvtV~~fkG~-~~VdIRE~Y~kdG~~~P~kKGIsLt~eqw~~l~~~~~  139 (153)
                      .+-+..-.|+|. +-.|||.|=-+.-++   .|||+||.++...|++.+.
T Consensus        26 ~KELNlVSWNg~~pKyDIR~Wspdh~kM---GKGITLT~eE~~~L~~~L~   72 (82)
T 2l3a_A           26 TKEINRVSFNGAPAKFDIRAWSPDHTKM---GKGITLSNEEFQTMVDAFK   72 (82)
T ss_dssp             EEEEEEEEESSSCEEEEEEEECSTTCCC---CCCEEECHHHHHHHHHHHH
T ss_pred             eEEEEEEeECCCCCCccccccCcchhhc---cCcccccHHHHHHHHHHHH
Confidence            356777788876 489999984332122   4999999999999988664

>3pm7_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.00A {Enterococcus faecalis}

Probab=93.37  E-value=0.1  Score=36.67  Aligned_cols=46  Identities=26%  Similarity=0.547  Sum_probs=34.6

Q ss_pred             eeEEEeeeCCce-eEeeeeEEecCCcccCCCcccccCHHHHHHHHHhHHH
Q 031792           92 RRVTIQDFKGKT-LVSIREYYTKGGKELPSAKGISLTEEQWSALRKNVSA  140 (153)
Q Consensus        92 rrvtV~~fkG~~-~VdIRE~Y~kdG~~~P~kKGIsLt~eqw~~l~~~~~~  140 (153)
                      +-+..-.|+|.. -.|||.|=.+.  .+. .|||+||.++...|++.+..
T Consensus        25 KELNlVSWN~~~pKyDIR~W~pdh--~kM-gKGITLT~eE~~~Lk~~L~~   71 (80)
T 3pm7_A           25 KELNLISWNGRPPKFDLREWAPDH--EKM-GKGITLTNEEFAELSKTIKS   71 (80)
T ss_dssp             EEEEEECGGGCCCEEEEEEECTTS--SSE-EEEEEECHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCCCCCccccccCcch--hhc-cCcceeCHHHHHHHHHHHHH
Confidence            467777888764 89999985432  133 38999999999999987653

>2ltd_A Uncharacterized protein YDBC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Lactococcus lactis subsp}

Probab=85.81  E-value=0.16  Score=35.70  Aligned_cols=45  Identities=24%  Similarity=0.418  Sum_probs=32.3

Q ss_pred             eeEEEeeeCCc-eeEeeeeEEecCCcccCCCcccccCHHHHHHHHHhHH
Q 031792           92 RRVTIQDFKGK-TLVSIREYYTKGGKELPSAKGISLTEEQWSALRKNVS  139 (153)
Q Consensus        92 rrvtV~~fkG~-~~VdIRE~Y~kdG~~~P~kKGIsLt~eqw~~l~~~~~  139 (153)
                      +-+..-.|+|. +-.|||.|--+.-++   .|||+||.++...|++.+.
T Consensus        25 KELNlVSWNg~~pKyDIR~Wspdh~kM---GKGITLT~eE~~~L~~~Ln   70 (80)
T 2ltd_A           25 KELNRVSWNDAEPKYDIRTWSPDHEKM---GKGITLSEEEFGVLLKELG   70 (80)
Confidence            34556667765 489999984432122   4999999999999988664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	153
d1pcfa_	66	d.18.1.1 (A:) Transcriptional coactivator PC4 C-te	1e-21
d1q1va_	70	a.159.4.1 (A:) DEK C-terminal domain {Human (Homo	0.001

>d1pcfa_ d.18.1.1 (A:) Transcriptional coactivator PC4 C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 66

class: Alpha and beta proteins (a+b)
fold: ssDNA-binding transcriptional regulator domain
superfamily: ssDNA-binding transcriptional regulator domain
family: Transcriptional coactivator PC4 C-terminal domain
domain: Transcriptional coactivator PC4 C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.1 bits (198), Expect = 1e-21
 Identities = 32/63 (50%), Positives = 44/63 (69%), Gaps = 1/63 (1%)

Query: 87  QLNKKRRVTIQDFKGKTLVSIREYYT-KGGKELPSAKGISLTEEQWSALRKNVSAIDTAV 145
           Q+ K R V+++DFKGK L+ IREY+    G+  P  KGISL  EQWS L++ +S ID AV
Sbjct: 4   QIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAV 63

Query: 146 KKM 148
           +K+
Sbjct: 64  RKL 66

>d1q1va_ a.159.4.1 (A:) DEK C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 70

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: DEK C-terminal domain
family: DEK C-terminal domain
domain: DEK C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (77), Expect = 0.001
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 1  MKAETKAKIEGTVREILVKSDMTETTEFQIRKQASEKM-GLDLSQPEYKAFVR 52
           K  T  +++ T++++L  +++ E T  QI K+  E     DL+  E K F++
Sbjct: 9  KKPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLT--ERKDFIK 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	153
d1pcfa_	66	Transcriptional coactivator PC4 C-terminal domain	99.97
d1q1va_	70	DEK C-terminal domain {Human (Homo sapiens) [TaxId	99.44

>d1pcfa_ d.18.1.1 (A:) Transcriptional coactivator PC4 C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: ssDNA-binding transcriptional regulator domain
superfamily: ssDNA-binding transcriptional regulator domain
family: Transcriptional coactivator PC4 C-terminal domain
domain: Transcriptional coactivator PC4 C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.8e-31  Score=181.00  Aligned_cols=64  Identities=50%  Similarity=0.868  Sum_probs=61.8

Q ss_pred             EEEeCCceeEEEeeeCCceeEeeeeEEe-cCCcccCCCcccccCHHHHHHHHHhHHHHHHHHHHh
Q 031792           85 ICQLNKKRRVTIQDFKGKTLVSIREYYT-KGGKELPSAKGISLTEEQWSALRKNVSAIDTAVKKM  148 (153)
Q Consensus        85 ~~~Ls~~rrvtV~~fkG~~~VdIRE~Y~-kdG~~~P~kKGIsLt~eqw~~l~~~~~~I~~ai~~l  148 (153)
                      +|+||++|||||++|||++||||||||. +||+|+|||||||||++||+.|++++++|++||++|
T Consensus         2 ~~~L~~~rrvtV~~FkG~~~vdIReyY~dkdGe~~PgkKGIsL~~~qw~~l~~~~~~i~~ai~~l   66 (66)
T d1pcfa_           2 MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL   66 (66)
T ss_dssp             EEEEETTEEEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHC
T ss_pred             eeecCCcEEEEEEEECCcEEEEEEEEEECCCCCCCCCCCeEEECHHHHHHHHHHHHHHHHHHHhC
Confidence            5899999999999999999999999995 799999999999999999999999999999999986

>d1q1va_ a.159.4.1 (A:) DEK C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: DEK C-terminal domain
family: DEK C-terminal domain
domain: DEK C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.1e-14  Score=96.83  Aligned_cols=53  Identities=28%  Similarity=0.456  Sum_probs=50.6

Q ss_pred             hHHHHHHHHHHHHhhhcCCcchhhHHHHHHHHhHHc-CCCCCChhHHHHHhhhhhh
Q 031792            3 AETKAKIEGTVREILVKSDMTETTEFQIRKQASEKM-GLDLSQPEYKAFVRHKSKE   57 (153)
Q Consensus         3 ~~sk~~i~~~V~eILk~aDl~t~Te~~vR~~l~~~l-gvdLs~~~~K~~Vr~~i~~   57 (153)
                      +||.++|...|++||++|||+++|.++||++|+++| |+||++  ||.||+.+|..
T Consensus        11 ~ptd~ei~~~i~~IL~~aDL~tvT~K~IR~~LE~~~~g~dL~~--rK~~I~~~I~~   64 (70)
T d1q1va_          11 PPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTE--RKDFIKTTVKE   64 (70)
T ss_dssp             CCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCSH--HHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHhhHHHHHHHHHHHcCCCCcHH--HHHHHHHHHHH
Confidence            689999999999999999999999999999999999 999999  99999999854