Citrus Sinensis ID: 031894

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
Protein Sequence
MAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALERAKLMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSDDEDDEDIDFDDDDFEDDEVDMLEHYLAEKSDSSTHSSRQPS
Secondary Structure (PSIPRED)
cEEEHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHcccccccccHHHHHHcccEEccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHccccHHccccccEEEEcccccEEEEcccccccccccHHHHHHcccccccccccHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
MAMIYTLVTSAKEWLSErysqdagidntgeeelekdevivphgepvtvETFLAWRERFEAELALERAKLmpesaltapkekkltgrqwfesgratAVSQKGavtvnevsddeddedidfddddfedDEVDMLEHYLAeksdssthssrqps
Flexible Loop (DISEMBL)
MAMIYTLVTSAKEWLSERYSQDAGIDNTGeeelekdevivphgepvtVETFLAWRERFEAELALERAKlmpesaltapkekkltgrqwfesgratavsqkgavtvnevsddeddedidFDDDDFEDDEVDMLEHYlaeksdssthssrqps
Low Complexity Region (SEG)
MAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFlawrerfeaelaleraklMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSddeddedidfddddfeddevdMLEHYLAEKSDSSTHSSRQPS
Disordered region (IsUnstruct)
***IYTLVTSAKEWLS********************EVIVPHGEPVTVETFLAWRERFEAELALE**************************************************************************************
Disordered Region (DISOPRED)
MAMIYTLVTSAKEWLSE*************************GEPVTVETFLAWRERF*****************************WFESGRATAVSQKGAVTVNEVSDDEDDEDIDFDDDDFEDDEVDM********************
Disordered Region (DISEMBL)
MAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALERAKLMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSDDEDDEDIDFDDDDFEDDEVDMLEHYLA**************
Disordered Region (DISPRO)
*AMIYTLVTSAKEWLSERYSQ**************DEVIVPHGEPVTVETFLAWRERFEAELALERAKLMPESALTAPK*KKLTGRQWFESGRATAVSQK******************FDDDDFEDDEVDMLEHYLAEK************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALERAKLMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSDDEDDEDIDFDDDDFEDDEVDMLEHYLAEKSDSSTHSSRQPS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	151	2.2.26 [Sep-21-2011]
Q99ND9	243	RWD domain-containing pro	yes	no	0.589	0.366	0.389	3e-07
Q9CQK7	243	RWD domain-containing pro	no	no	0.589	0.366	0.389	3e-07
Q9H446	243	RWD domain-containing pro	no	no	0.589	0.366	0.389	6e-07
Q03768	265	Protein GIR2 OS=Saccharom	yes	no	0.582	0.332	0.371	6e-06
O94721	215	RWD domain-containing pro	yes	no	0.602	0.423	0.311	0.0003

>sp|Q99ND9|RWDD1_RAT RWD domain-containing protein 1 OS=Rattus norvegicus GN=Rwdd1 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 6/95 (6%)

Query: 1   MAMIYTLVTSAKEWLSERYSQ----DAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRE 56
           M MI+TLVT+ +E L+E   Q            E+E E+ E  + HG PVT+E FL+W+ 
Sbjct: 97  MVMIFTLVTAVQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKKLFHGTPVTIENFLSWKA 156

Query: 57  RFEAELALERAKLMPESALTAPKEKKLTGRQWFES 91
           +F+AEL   + K M E       + KL+G+Q FE+
Sbjct: 157 KFDAELLEIKKKRMKEEEQAG--KNKLSGKQLFET 189

Protects DRG2 from proteolytic degradation.
Rattus norvegicus (taxid: 10116)

>sp|Q9CQK7|RWDD1_MOUSE RWD domain-containing protein 1 OS=Mus musculus GN=Rwdd1 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 6/95 (6%)

Query: 1   MAMIYTLVTSAKEWLSERYSQ----DAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRE 56
           M MI+TLVT+ +E L+E   Q            E+E E+ E  + HG PVT+E FL+W+ 
Sbjct: 97  MVMIFTLVTAVQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKKLFHGTPVTIENFLSWKA 156

Query: 57  RFEAELALERAKLMPESALTAPKEKKLTGRQWFES 91
           +F+AEL   + K M E       + KL+G+Q FE+
Sbjct: 157 KFDAELLEIKKKRMKEEEQAG--KNKLSGKQLFET 189

Protects DRG2 from proteolytic degradation.

Mus musculus (taxid: 10090)

>sp|Q9H446|RWDD1_HUMAN RWD domain-containing protein 1 OS=Homo sapiens GN=RWDD1 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 6/95 (6%)

Query: 1   MAMIYTLVTSAKEWLSERYSQ----DAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRE 56
           M MI+TLVT+ +E L+E   Q            E+E E+ E  + HG PVT+E FL W+ 
Sbjct: 97  MVMIFTLVTAVQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKQLFHGTPVTIENFLNWKA 156

Query: 57  RFEAELALERAKLMPESALTAPKEKKLTGRQWFES 91
           +F+AEL   + K M E       + KL+G+Q FE+
Sbjct: 157 KFDAELLEIKKKRMKEEEQAG--KNKLSGKQLFET 189

Protects DRG2 from proteolytic degradation.

Homo sapiens (taxid: 9606)

>sp|Q03768|GIR2_YEAST Protein GIR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIR2 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 9/97 (9%)

Query: 1   MAMIYTLVTSAKE----WLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRE 56
           M M + L++S KE    W SE+ ++         +E EK E    HG  VT E++L WR 
Sbjct: 142 MQMCFALISSIKERCEQWYSEQLNKLEKQYELEAQEREKKEQAKFHGTKVTRESYLEWRS 201

Query: 57  RFEAELAL-ERAKLMPESALTAPKEKKLTGRQWFESG 92
           +F  EL L ER ++    A       KLTG+Q FE G
Sbjct: 202 KFRQELKLDERDQVRRMKAHHG----KLTGKQMFEQG 234

Involved in ribosomal function.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O94721|YCF9_SCHPO RWD domain-containing protein C1393.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1393.09c PE=4 SV=1

 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 18/109 (16%)

Query: 1   MAMIYTLVTSAKE-----WLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWR 55
           MAMI++L + AKE      + +   +   I+    +E E++     HG PVTVE+F  W+
Sbjct: 97  MAMIFSLCSVAKEETNAILIEQSQRETQAIEERHRKEAEQENKKF-HGTPVTVESFTEWK 155

Query: 56  ERFEA----ELALERAKLMPESALT--------APKEKKLTGRQWFESG 92
           + F+A    +L LE+   + E+           A  EK++TGR+ FE+ 
Sbjct: 156 KGFDAWRNEQLKLEQESKLKEALSAASSSNARKAILEKRMTGRELFENN 204

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
297743115	246	unnamed protein product [Vitis vinifera]	0.966	0.593	0.852	3e-49
225442349	255	PREDICTED: RWD domain-containing protein	0.966	0.572	0.852	3e-49
255549664	253	rwd domain-containing protein, putative	0.953	0.569	0.805	1e-48
224128650	252	predicted protein [Populus trichocarpa]	0.947	0.567	0.812	4e-48
224059188	252	predicted protein [Populus trichocarpa]	0.947	0.567	0.791	1e-45
356526049	253	PREDICTED: RWD domain-containing protein	0.966	0.577	0.662	4e-43
363807786	253	uncharacterized protein LOC100813322 [Gl	0.966	0.577	0.662	2e-42
449447836	255	PREDICTED: RWD domain-containing protein	0.973	0.576	0.688	1e-40
77999283	254	RWD domain-containing protein [Solanum t	0.927	0.551	0.675	2e-40
15218023	252	ubiquitin-conjugating enzyme-like protei	0.947	0.567	0.718	1e-39

>gi|297743115|emb|CBI35982.3| unnamed protein product [Vitis vinifera]

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 127/149 (85%), Positives = 138/149 (92%), Gaps = 3/149 (2%)

Query: 1   MAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEA 60
           MAM+YTLVTSA+EWLSER+ QDA ++N+ EEE EKD++IVPHGEPVTVETFLAWRERFEA
Sbjct: 99  MAMVYTLVTSAQEWLSERFGQDANVENSEEEETEKDDIIVPHGEPVTVETFLAWRERFEA 158

Query: 61  ELALERAKLMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSDDEDDEDIDFD 120
           ELALERAKLMPESALTAPKEKKL+GRQWFESGRA A   KGAV VNE SD+EDDEDIDFD
Sbjct: 159 ELALERAKLMPESALTAPKEKKLSGRQWFESGRAVA---KGAVPVNEESDEEDDEDIDFD 215

Query: 121 DDDFEDDEVDMLEHYLAEKSDSSTHSSRQ 149
           DDDFEDDE DMLEHYLAEKSDSSTHSSR+
Sbjct: 216 DDDFEDDEEDMLEHYLAEKSDSSTHSSRR 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442349|ref|XP_002281163.1| PREDICTED: RWD domain-containing protein 1-like [Vitis vinifera]

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 127/149 (85%), Positives = 138/149 (92%), Gaps = 3/149 (2%)

Query: 1   MAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEA 60
           MAM+YTLVTSA+EWLSER+ QDA ++N+ EEE EKD++IVPHGEPVTVETFLAWRERFEA
Sbjct: 108 MAMVYTLVTSAQEWLSERFGQDANVENSEEEETEKDDIIVPHGEPVTVETFLAWRERFEA 167

Query: 61  ELALERAKLMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSDDEDDEDIDFD 120
           ELALERAKLMPESALTAPKEKKL+GRQWFESGRA A   KGAV VNE SD+EDDEDIDFD
Sbjct: 168 ELALERAKLMPESALTAPKEKKLSGRQWFESGRAVA---KGAVPVNEESDEEDDEDIDFD 224

Query: 121 DDDFEDDEVDMLEHYLAEKSDSSTHSSRQ 149
           DDDFEDDE DMLEHYLAEKSDSSTHSSR+
Sbjct: 225 DDDFEDDEEDMLEHYLAEKSDSSTHSSRR 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549664|ref|XP_002515883.1| rwd domain-containing protein, putative [Ricinus communis] gi|223544788|gb|EEF46303.1| rwd domain-containing protein, putative [Ricinus communis]

 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 120/149 (80%), Positives = 132/149 (88%), Gaps = 5/149 (3%)

Query: 1   MAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEA 60
           MAM+YTLVTSAKEWLSE+Y QDA  +   +EE  KDEVIVPHGEPVT++TFLAWRERFEA
Sbjct: 108 MAMVYTLVTSAKEWLSEKYGQDASNETIEDEEAAKDEVIVPHGEPVTIDTFLAWRERFEA 167

Query: 61  ELALERAKLMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSDDEDDEDIDFD 120
           ELALERAKLMPES LTAPKEKK++GRQWFESGRA     KGA TVNE SD+ED+E+IDFD
Sbjct: 168 ELALERAKLMPESVLTAPKEKKISGRQWFESGRA-----KGAATVNEESDEEDEEEIDFD 222

Query: 121 DDDFEDDEVDMLEHYLAEKSDSSTHSSRQ 149
           DDDFEDDE DMLEHYLAEKSDSSTHSSR+
Sbjct: 223 DDDFEDDEEDMLEHYLAEKSDSSTHSSRR 251

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128650|ref|XP_002329056.1| predicted protein [Populus trichocarpa] gi|222839727|gb|EEE78050.1| predicted protein [Populus trichocarpa]

 Score =  196 bits (497), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 121/149 (81%), Positives = 131/149 (87%), Gaps = 6/149 (4%)

Query: 1   MAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEA 60
           MAM+YTLVTSAKEWLSERYSQDA  ++   EE  KD+VIVPHGEPVTVETFLAWRERFEA
Sbjct: 108 MAMVYTLVTSAKEWLSERYSQDASNEDIENEEAAKDDVIVPHGEPVTVETFLAWRERFEA 167

Query: 61  ELALERAKLMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSDDEDDEDIDFD 120
           ELALERAKLMPESALTAPKEKKLTGR W+ESG+A     KGA+ VNE SD ED+E+IDFD
Sbjct: 168 ELALERAKLMPESALTAPKEKKLTGRLWYESGKA-----KGAIAVNEGSDVEDEEEIDFD 222

Query: 121 DDDFEDDEVDMLEHYLAEKSDSSTHSSRQ 149
           DDDFEDDE DMLEHYLAEKSDSS HSSR+
Sbjct: 223 DDDFEDDEEDMLEHYLAEKSDSS-HSSRK 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059188|ref|XP_002299758.1| predicted protein [Populus trichocarpa] gi|222847016|gb|EEE84563.1| predicted protein [Populus trichocarpa]

 Score =  187 bits (474), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/149 (79%), Positives = 130/149 (87%), Gaps = 6/149 (4%)

Query: 1   MAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEA 60
           MAM+YTLVTSAKEWLSERY QDA  ++   EE  KD+VIVPHGEPVTVETFLAWRE FEA
Sbjct: 108 MAMVYTLVTSAKEWLSERYCQDAINEDIENEEAAKDDVIVPHGEPVTVETFLAWREIFEA 167

Query: 61  ELALERAKLMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSDDEDDEDIDFD 120
           ELALERAKLMPESALTAPKEKKLTGR W+ESG+A     KGAV VNE SD+ED+E+IDFD
Sbjct: 168 ELALERAKLMPESALTAPKEKKLTGRLWYESGKA-----KGAVAVNEGSDEEDEEEIDFD 222

Query: 121 DDDFEDDEVDMLEHYLAEKSDSSTHSSRQ 149
           DDDFEDDE DMLEHYLA+KSDSS H+SR+
Sbjct: 223 DDDFEDDEEDMLEHYLADKSDSS-HASRR 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526049|ref|XP_003531632.1| PREDICTED: RWD domain-containing protein 1-like [Glycine max]

 Score =  179 bits (454), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 100/151 (66%), Positives = 120/151 (79%), Gaps = 5/151 (3%)

Query: 1   MAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEA 60
           MAMIYTLVTSAKEWL++R+ QD  + +T  EE  K++V++PHGEPVTVETFLAWRERFEA
Sbjct: 108 MAMIYTLVTSAKEWLADRFCQD-DVGSTEAEEAAKEDVVIPHGEPVTVETFLAWRERFEA 166

Query: 61  ELALERAKLMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSDDEDDEDIDFD 120
           ELALERAKLMPES L+APKEKKL+GRQWFESGRA  V    A    E   +++++    +
Sbjct: 167 ELALERAKLMPESVLSAPKEKKLSGRQWFESGRAKGV----AAVAEESEGEDEEDIDFDE 222

Query: 121 DDDFEDDEVDMLEHYLAEKSDSSTHSSRQPS 151
           DD  +D+E DMLEHYLAEKSDSSTHSS + S
Sbjct: 223 DDFEDDEEEDMLEHYLAEKSDSSTHSSMRAS 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807786|ref|NP_001241922.1| uncharacterized protein LOC100813322 [Glycine max] gi|255641328|gb|ACU20941.1| unknown [Glycine max]

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 100/151 (66%), Positives = 118/151 (78%), Gaps = 5/151 (3%)

Query: 1   MAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEA 60
           MAMIYTLVTSAKEWL++R+SQD  + +T  EE  KD+V++PHGEPVTVETFLAWRERFEA
Sbjct: 108 MAMIYTLVTSAKEWLADRFSQD-DVGSTEAEEAAKDDVVIPHGEPVTVETFLAWRERFEA 166

Query: 61  ELALERAKLMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSDDEDDEDIDFD 120
           ELALE AKLMPES LTAPKEKKL+GRQWFESGR   V    A    E   +++++    +
Sbjct: 167 ELALELAKLMPESVLTAPKEKKLSGRQWFESGRVKGV----AAVAEESDVEDEEDIDFDE 222

Query: 121 DDDFEDDEVDMLEHYLAEKSDSSTHSSRQPS 151
           DD  +D+E DMLEHYLAEKSD STHSS + S
Sbjct: 223 DDFEDDEEEDMLEHYLAEKSDLSTHSSMRAS 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447836|ref|XP_004141673.1| PREDICTED: RWD domain-containing protein 1-like [Cucumis sativus] gi|449480599|ref|XP_004155941.1| PREDICTED: RWD domain-containing protein 1-like [Cucumis sativus]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/151 (68%), Positives = 126/151 (83%), Gaps = 4/151 (2%)

Query: 1   MAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEA 60
           MAM+YTLVTS+KEWLSER+ Q++ ++    EE  K++VIVPHGEPVT++TFLAWRERFEA
Sbjct: 108 MAMVYTLVTSSKEWLSERFGQESSLEIAEAEERAKEDVIVPHGEPVTLDTFLAWRERFEA 167

Query: 61  ELALERAKLMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVS-DDEDDEDIDF 119
           E+ALERAK+MPESALTAPKEKKL GRQWFESGRA   S KGA  V E S +D++++    
Sbjct: 168 EIALERAKIMPESALTAPKEKKLAGRQWFESGRA---SGKGAAPVTEGSDEDDEEDIDFD 224

Query: 120 DDDDFEDDEVDMLEHYLAEKSDSSTHSSRQP 150
           +DD  +DDE DMLEHYLAEKSDSS+HSSR+P
Sbjct: 225 EDDFEDDDEEDMLEHYLAEKSDSSSHSSRRP 255

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77999283|gb|ABB16988.1| RWD domain-containing protein [Solanum tuberosum]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 100/148 (67%), Positives = 121/148 (81%), Gaps = 8/148 (5%)

Query: 1   MAMIYTLVTSAKEWLSERYSQ--DAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERF 58
           MAMIYTLV+SAK+WLSER++Q  D G+++   +E +K+EVIVPHGE VTVETFLAWRERF
Sbjct: 113 MAMIYTLVSSAKDWLSERFAQENDEGVED---DEAKKEEVIVPHGEAVTVETFLAWRERF 169

Query: 59  EAELALERAKLMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSDDEDDEDID 118
           EAELALERAKLMP++AL+  KEKKLTGRQWFESGRA   S K A+   E SD++ D+   
Sbjct: 170 EAELALERAKLMPDAALSVSKEKKLTGRQWFESGRA---SGKAAIATAEESDEDVDDIDF 226

Query: 119 FDDDDFEDDEVDMLEHYLAEKSDSSTHS 146
            DDD  +D+E DMLEHYLAEK+DSS+HS
Sbjct: 227 DDDDFEDDEEEDMLEHYLAEKTDSSSHS 254

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218023|ref|NP_175584.1| ubiquitin-conjugating enzyme-like protein [Arabidopsis thaliana] gi|12321663|gb|AAG50865.1|AC025294_3 unknown protein [Arabidopsis thaliana] gi|19698889|gb|AAL91180.1| unknown protein [Arabidopsis thaliana] gi|23198350|gb|AAN15702.1| unknown protein [Arabidopsis thaliana] gi|332194587|gb|AEE32708.1| ubiquitin-conjugating enzyme-like protein [Arabidopsis thaliana]

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/149 (71%), Positives = 123/149 (82%), Gaps = 6/149 (4%)

Query: 1   MAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEA 60
           MAMIYTLV+SAK+WLSE Y QD   +    E  ++DEVIVPHGEPVT+ETFLAWRER+EA
Sbjct: 108 MAMIYTLVSSAKDWLSEHYGQDDAAEFAEVEAAKEDEVIVPHGEPVTLETFLAWRERYEA 167

Query: 61  ELALERAKLMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTV-NEVSDDEDDEDIDF 119
           ELALERAKLMPESALTAPKEKKLTGRQWFESGR      +G V + +E  ++ED+EDIDF
Sbjct: 168 ELALERAKLMPESALTAPKEKKLTGRQWFESGRG-----RGTVVIADEEDEEEDEEDIDF 222

Query: 120 DDDDFEDDEVDMLEHYLAEKSDSSTHSSR 148
           +D+DFEDDE DMLEHYLAEKSDSS   +R
Sbjct: 223 EDEDFEDDEEDMLEHYLAEKSDSSAPPTR 251

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
TAIR|locus:2017532	252	AT1G51730 [Arabidopsis thalian	0.947	0.567	0.503	1.6e-29
MGI|MGI:1913771	243	Rwdd1 "RWD domain containing 1	0.589	0.366	0.315	0.00078

TAIR|locus:2017532 AT1G51730 [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 75/149 (50%), Positives = 85/149 (57%)

Query:     1 MAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFXXXXXXXXX 60
             MAMIYTLV+SAK+WLSE Y QD   +    E  ++DEVIVPHGEPVT+ETF         
Sbjct:   108 MAMIYTLVSSAKDWLSEHYGQDDAAEFAEVEAAKEDEVIVPHGEPVTLETFLAWRERYEA 167

Query:    61 XXXXXXXXXMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTV-NEVSXXXXXXXXXX 119
                      MPESALTAPKEKKLTGRQWFESGR      +G V + +E            
Sbjct:   168 ELALERAKLMPESALTAPKEKKLTGRQWFESGRG-----RGTVVIADEEDEEEDEEDIDF 222

Query:   120 XXXXXXXXXXXMLEHYLAEKSDSSTHSSR 148
                        MLEHYLAEKSDSS   +R
Sbjct:   223 EDEDFEDDEEDMLEHYLAEKSDSSAPPTR 251

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1913771 Rwdd1 "RWD domain containing 1" [Mus musculus (taxid:10090)]

 Score = 90 (36.7 bits), Expect = 0.00078, P = 0.00078
 Identities = 30/95 (31%), Positives = 42/95 (44%)

Query:     1 MAMIYTLVTSAKEWLSERYSQ----DAGIDNTGEEELEKDEVIVPHGEPVTVETFXXXXX 56
             M MI+TLVT+ +E L+E   Q            E+E E+ E  + HG PVT+E F     
Sbjct:    97 MVMIFTLVTAVQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKKLFHGTPVTIENFLSWKA 156

Query:    57 XXXXXXXXXXXXXMPESALTAPKEKKLTGRQWFES 91
                          M E       + KL+G+Q FE+
Sbjct:   157 KFDAELLEIKKKRMKEEEQAG--KNKLSGKQLFET 189


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.306   0.121   0.333    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      151       112   0.00091  102 3  11 23  0.42    31
                                                     29  0.43    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  539 (57 KB)
  Total size of DFA:  118 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.41u 0.24s 9.65t   Elapsed:  00:00:00
  Total cpu time:  9.41u 0.24s 9.65t   Elapsed:  00:00:00
  Start:  Fri May 10 06:02:12 2013   End:  Fri May 10 06:02:12 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00034208001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (263 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00019392001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (368 aa)				•	•		•		0.477
	GSVIVG00026600001	SubName- Full=Chromosome chr12 scaffold_38, whole genome shotgun sequence; (229 aa)				•					0.465
	GSVIVG00034107001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (399 aa)				•	•		•		0.423

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	151
KOG4018	215	consensus Uncharacterized conserved protein, conta	99.95
KOG1763	343	consensus Uncharacterized conserved protein, conta	99.01
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	97.29

>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=99.95  E-value=2.9e-29  Score=205.45  Aligned_cols=109  Identities=39%  Similarity=0.466  Sum_probs=90.7

Q ss_pred             CceehhhHHHHHHHHHHHhhhhhcc--cccchhhhhhhhhcCCCCcccChhHHHHHHHHHHHHHHHHHHhcCccccccCC
Q 031894            1 MAMIYTLVTSAKEWLSERYSQDAGI--DNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALERAKLMPESALTAP   78 (151)
Q Consensus         1 M~MIFTLvsa~KE~L~e~~~q~~~~--~e~e~~e~eeeE~~~~~GTPVT~EsF~~WK~kf~~E~~~~k~k~~~e~~~~~~   78 (151)
                      |+|||||||++|+||+++++|...+  .+.+.++++++++++|||||||++||++||.+|++++...+++.++.   .+.
T Consensus        98 maMiftLvss~ke~l~e~~~q~~~~e~~e~~~~~~ee~e~~kfhgt~VT~esfl~Wk~~fe~el~~~~~k~~~~---~~~  174 (215)
T KOG4018|consen   98 MAMIFTLVSSAKEELNEIVEQQKAAEQREQEAREAEEEERKKFHGTPVTLESFLEWKLKFEEELLQIKAKVKKR---LQA  174 (215)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCceehhhhHHHHHhhhhhhhhhhhhhhhH---HHH
Confidence            9999999999999999999998776  44567788999999999999999999999999999997776666542   456


Q ss_pred             CCCCcchhHHHhcCCccccc------cCCCcccccCCCCc
Q 031894           79 KEKKLTGRQWFESGRATAVS------QKGAVTVNEVSDDE  112 (151)
Q Consensus        79 ~~~kLTGRqLFe~d~~L~~s------d~g~~~~~~es~~~  112 (151)
                      ..+++||||+|++|+.+..+      |++..++.++++|+
T Consensus       175 ~~~k~tgRQ~f~~d~~~~~~~~~~~~da~~~~e~~e~~f~  214 (215)
T KOG4018|consen  175 LAKKLTGRQLFETDHKGDRSDIWNLVDAVKDVEIDESLFQ  214 (215)
T ss_pred             HhhhHHHHHHHHhcccCChhhhHHhhhhhhhhhcchhhcc
Confidence            77999999999999999777      44555555555544

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=99.01  E-value=2.4e-10  Score=98.55  Aligned_cols=64  Identities=28%  Similarity=0.309  Sum_probs=46.7

Q ss_pred             CCcccChhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCCcchhHHHhcCCccccccCCCccccc
Q 031894           42 HGEPVTVETFLAWRERFEAELALERAKLMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNE  107 (151)
Q Consensus        42 ~GTPVT~EsF~~WK~kf~~E~~~~k~k~~~e~~~~~~~~~kLTGRqLFe~d~~L~~sd~g~~~~~~  107 (151)
                      +.||||+++|++||.+..+++.+..++..... +..++.+ ||||+||++++.|+.+|++++.+.+
T Consensus       225 nlT~~T~e~F~~WKk~k~~er~~k~~~~~~~~-k~~gk~~-~sGRElF~~~~dl~~dd~~e~~d~e  288 (343)
T KOG1763|consen  225 NLTPLTEETFKAWKKRKIRERKEKLAAEKAER-KKVGKSN-MSGRELFESNADLVNDDDEEAGDLE  288 (343)
T ss_pred             CCccccHHHHHHHHHhhHHHHHHHHHHHHHHh-hhhccCC-CchHHHHhhchhhccCchhhccchh
Confidence            58999999999999998777766554433221 1223334 9999999999999988866555444

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=97.29  E-value=0.00012  Score=62.40  Aligned_cols=66  Identities=21%  Similarity=0.203  Sum_probs=41.7

Q ss_pred             hhhhcCC--CCcccChhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCCcchh-HHHhcCCccccccCCC
Q 031894           35 KDEVIVP--HGEPVTVETFLAWRERFEAELALERAKLMPESALTAPKEKKLTGR-QWFESGRATAVSQKGA  102 (151)
Q Consensus        35 eeE~~~~--~GTPVT~EsF~~WK~kf~~E~~~~k~k~~~e~~~~~~~~~kLTGR-qLFe~d~~L~~sd~g~  102 (151)
                      +-++.+.  ..||||.|+|..|+.-.+-....++.++  .+.+...+...+||+ ++|+++..++-+|-++
T Consensus       201 E~eR~~L~~~LTP~TeenFk~Wkd~~~~r~lkq~ee~--~s~Rk~~gr~~~~k~~e~FEt~~d~~~ddv~~  269 (299)
T COG5252         201 ELERQSLPEKLTPLTEENFKEWKDGRRLRILKQKEEK--ESARKVKGRATGTKGVELFETRRDLFKDDVEA  269 (299)
T ss_pred             HHHhccCCCcCCcccHHHHHHhccchHHHHHHHHHHH--Hhcccchhhhhhccchhhhhcccccccccccc
Confidence            4444443  5899999999999976554443333222  122223344556666 9999999987776443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	151
4a9a_C	142	Translation machinery-associated protein 46; DRG-D	98.96

>4a9a_C Translation machinery-associated protein 46; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=98.96  E-value=4.2e-10  Score=86.80  Aligned_cols=44  Identities=23%  Similarity=0.368  Sum_probs=33.9

Q ss_pred             CCcccChhHHHHHHHHHHHHHHHHHHhcCccccccCCCCCCcchhHHHhcCC
Q 031894           42 HGEPVTVETFLAWRERFEAELALERAKLMPESALTAPKEKKLTGRQWFESGR   93 (151)
Q Consensus        42 ~GTPVT~EsF~~WK~kf~~E~~~~k~k~~~e~~~~~~~~~kLTGRqLFe~d~   93 (151)
                      +.||||+|+|++||+++..++.....+.        .+++++|||+||..+.
T Consensus        34 nlTpVT~EtF~~WKk~k~~ek~~~~~~~--------~~kk~~tGRei~~~g~   77 (142)
T 4a9a_C           34 KLTPITIANFAQWKKDHVIAKINAEKKL--------SSKRKPTGREIILKMS   77 (142)
T ss_dssp             GCCCCCHHHHHHHHHHHHHHHHHHHHHH--------HTTSCCCHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHH--------HHhhhhhhHHHHHhcc
Confidence            4699999999999999888875543322        2245789999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00