Citrus Sinensis ID: 031916

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
MNSSSYPNQKFDHQHVATGVPVAGFQQQHANVHQLVEGPWSSGLCDCFSDCSTCCLTCWCPCITFGRIADIVDKGSSSCSVSGALYLVISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQEYRELKARGFDMSLGN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccHHHHHHHHHHccccccccccHHHHccHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccEEHccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEccHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mnsssypnqkfdhqhvatgvpvagfqqQHANVHQLvegpwssglcdcfsdcstccltcwcpcitfgriadivdkgssscsvsGALYLVISLVTGCGCLYSSCYRSKMRQQymlkggpcgdclahfccdtCALSQEYRELKARGFDMSLGN
Flexible Loop (DISEMBL)
mnsssypnqkfdHQHVATGVPVAGFQQQHANVHQLVEGPWSSGLCDCFSDCSTCCLTCWCPCITFGRIADIVDKGSSSCSVSGALYLVISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQEYRELKargfdmslgn
Low Complexity Region (SEG)
MNSSSYPNQKFDHQHVATGVPVAGFQQQHANVHQLVEGPWSSGLCDCFSDcstccltcwcpcitFGRIADIVDKGSSSCSVSGALYLVISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQEYRELKARGFDMSLGN
Disordered region (IsUnstruct)
**************HVATGVPVAGFQQQHANVHQLVEGPWSSGLCDCFSDCSTCCLTCWCPCITFGRIADIVDKGSSSCSVSGALYLVISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQEYREL***********
Disordered Region (DISOPRED)
*******************************************LCDCFSDCSTCCLTCWCPCITFGRIADIVDKGSSSCSVSGALYLVISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQEYRELKARGF******
Disordered Region (DISEMBL)
*********KFDHQHVATGVPVAGFQQQHANVHQLVEGPWSSGLCDCFSDCSTCCLTCWCPCITFGRIADIVDKGSSSCSVSGALYLVISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQEYRELKARGFDMSLGN
Disordered Region (DISPRO)
***************************************WSSGLCDCFSDCSTCCLTCWCPCITFGRIADIVDKGSSSCSVSGALYLVISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQEYRELKARG*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSSSYPNQKFDHQHVATGVPVAGFQQQHANVHQLVEGPWSSGLCDCFSDCSTCCLTCWCPCITFGRIADIVDKGSSSCSVSGALYLVISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQEYRELKARGFDMSLGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	150	2.2.26 [Sep-21-2011]
Q9LQU4	152	Protein PLANT CADMIUM RES	yes	no	0.833	0.822	0.616	2e-43
P0CW97	152	Protein PLANT CADMIUM RES	no	no	0.813	0.802	0.631	7e-43
Q9LQU2	151	Protein PLANT CADMIUM RES	no	no	0.806	0.801	0.617	2e-39
D9HP26	157	Cell number regulator 10	N/A	no	0.893	0.853	0.557	3e-38
D9HP25	175	Cell number regulator 9 O	N/A	no	0.946	0.811	0.544	2e-31
B6TYV8	181	Cell number regulator 2 O	N/A	no	0.733	0.607	0.645	8e-30
D9HP27	158	Cell number regulator 11	N/A	no	0.76	0.721	0.568	3e-29
D9HP19	167	Cell number regulator 3 O	N/A	no	0.926	0.832	0.476	4e-29
B6TZ45	191	Cell number regulator 1 O	N/A	no	0.733	0.575	0.563	1e-28
P0CW98	148	Protein PLANT CADMIUM RES	no	no	0.813	0.824	0.515	1e-28

>sp|Q9LQU4|PCR2_ARATH Protein PLANT CADMIUM RESISTANCE 2 OS=Arabidopsis thaliana GN=PCR2 PE=1 SV=1

 Score =  174 bits (440), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 77/125 (61%), Positives = 97/125 (77%)

Query: 25  FQQQHANVHQLVEGPWSSGLCDCFSDCSTCCLTCWCPCITFGRIADIVDKGSSSCSVSGA 84
            + QH +     EG WS+G CDCFSDC  CC+T WCPCITFG++A+IVD+GS+SC  +GA
Sbjct: 1   MEAQHLHAKPHAEGEWSTGFCDCFSDCKNCCITFWCPCITFGQVAEIVDRGSTSCGTAGA 60

Query: 85  LYLVISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQEYRELKARGF 144
           LY +I++VTGC C+YS  YR KMR QY +KG  C DCL HFCC+ C+L+Q+YRELK RG+
Sbjct: 61  LYALIAVVTGCACIYSCFYRGKMRAQYNIKGDDCTDCLKHFCCELCSLTQQYRELKHRGY 120

Query: 145 DMSLG 149
           DMSLG
Sbjct: 121 DMSLG 125

Zinc transporter acting in both zinc extrusion and long-distance zinc transport. Involved in the loading of zinc into the xyleme and in the detoxification of excess zinc at the epidermal cells. Acts independently from the zinc transporters HMA2 and HMA4. May be also involved in cadmium resistance.
Arabidopsis thaliana (taxid: 3702)

>sp|P0CW97|PCR3_ARATH Protein PLANT CADMIUM RESISTANCE 3 OS=Arabidopsis thaliana GN=PCR3 PE=3 SV=1

 Score =  172 bits (436), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 77/122 (63%), Positives = 96/122 (78%)

Query: 28  QHANVHQLVEGPWSSGLCDCFSDCSTCCLTCWCPCITFGRIADIVDKGSSSCSVSGALYL 87
           QH   +   EG WS+G CDCFSDC  CC+T  CPCITFG++ADIVD+G++SC  +GALY+
Sbjct: 4   QHLQANPHAEGEWSTGFCDCFSDCQNCCITWLCPCITFGQVADIVDRGNTSCGTAGALYV 63

Query: 88  VISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQEYRELKARGFDMS 147
           +++ +TGCGCLYS  YR K+R QY ++G  C DCL HFCC+ CAL+QEYRELK RGFDMS
Sbjct: 64  LLAAITGCGCLYSCIYRGKIRAQYNIRGDGCTDCLKHFCCELCALTQEYRELKHRGFDMS 123

Query: 148 LG 149
           LG
Sbjct: 124 LG 125

May be involved in heavy metals transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQU2|PCR1_ARATH Protein PLANT CADMIUM RESISTANCE 1 OS=Arabidopsis thaliana GN=PCR1 PE=1 SV=1

 Score =  160 bits (406), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/123 (61%), Positives = 93/123 (75%), Gaps = 2/123 (1%)

Query: 27  QQHANVHQLVEGPWSSGLCDCFSDCSTCCLTCWCPCITFGRIADIVDKGSSSCSVSGALY 86
           Q HA  H   +G WS+G CDCFSDC  CC+T  CPCITFG++A+IVD+GS SC  +GALY
Sbjct: 4   QLHAKPH--AQGEWSTGFCDCFSDCRNCCITLCCPCITFGQVAEIVDRGSKSCCAAGALY 61

Query: 87  LVISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQEYRELKARGFDM 146
           ++I L+T CG +Y+  Y  KMR QY +KG  C DCL HFCC+ CAL+Q+YRELK RGFDM
Sbjct: 62  MLIDLITSCGRMYACFYSGKMRAQYNIKGDGCTDCLKHFCCNLCALTQQYRELKHRGFDM 121

Query: 147 SLG 149
           SLG
Sbjct: 122 SLG 124

Involved in glutathione-independent cadmium resistance. Reduces cadmium uptake rather than activating efflux, but is not closely coupled to calcium transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|D9HP26|CNR10_MAIZE Cell number regulator 10 OS=Zea mays GN=CNR10 PE=2 SV=1

 Score =  157 bits (396), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 83/149 (55%), Positives = 96/149 (64%), Gaps = 15/149 (10%)

Query: 6   YPNQKFDHQHVATGVPVAGFQQQHANVHQLVEGP-----WSSGLCDCFSDCSTCCLTCWC 60
           YP  K      A   PV GF          V GP     WSSGL DCF DC  CCLTCWC
Sbjct: 2   YP-PKASGDPAAGAAPVTGFP---------VGGPAASSQWSSGLLDCFDDCGLCCLTCWC 51

Query: 61  PCITFGRIADIVDKGSSSCSVSGALYLVISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGD 120
           PCITFGR+A+IVD+G++SC  +GALY V++  TGC  +YS  YR+KMR Q  L   PC D
Sbjct: 52  PCITFGRVAEIVDRGATSCGTAGALYAVLAYFTGCQWIYSCTYRAKMRAQLGLPETPCCD 111

Query: 121 CLAHFCCDTCALSQEYRELKARGFDMSLG 149
           CL HFCC+ CAL Q+Y+ELKARGFD  LG
Sbjct: 112 CLVHFCCEPCALCQQYKELKARGFDPVLG 140

Zea mays (taxid: 4577)

>sp|D9HP25|CNR9_MAIZE Cell number regulator 9 OS=Zea mays GN=CNR9 PE=2 SV=1

 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/147 (54%), Positives = 97/147 (65%), Gaps = 5/147 (3%)

Query: 3   SSSYPNQKFDHQHVATGVPVAGFQQQHANVHQLVEGPWSSGLCDCFSDCSTCCLTCWCPC 62
           SSS P  +     V  G+P++      A     V G WSSGLC C  DC  CCLTCWCPC
Sbjct: 9   SSSQPAAEMAQPVV--GIPIS---SPGAVAVGPVVGKWSSGLCACSDDCGLCCLTCWCPC 63

Query: 63  ITFGRIADIVDKGSSSCSVSGALYLVISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGDCL 122
           ITFGRIA+IVD+G++SC V+G +Y +++  TGC  +YS  YRS+MR Q  L    C DC 
Sbjct: 64  ITFGRIAEIVDRGATSCGVAGTIYTLLACFTGCHWIYSCTYRSRMRAQLGLPEACCCDCC 123

Query: 123 AHFCCDTCALSQEYRELKARGFDMSLG 149
            HFCC+ CALSQ+YRELKARGFD  LG
Sbjct: 124 VHFCCEPCALSQQYRELKARGFDPDLG 150

Zea mays (taxid: 4577)

>sp|B6TYV8|CNR2_MAIZE Cell number regulator 2 OS=Zea mays GN=CNR2 PE=2 SV=1

 Score =  129 bits (323), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 71/110 (64%), Positives = 86/110 (78%)

Query: 40  WSSGLCDCFSDCSTCCLTCWCPCITFGRIADIVDKGSSSCSVSGALYLVISLVTGCGCLY 99
           WS+GLC+CF DC  CC+TC CPCITFG+ A+I+D+GS+SC  SGALY ++ L+TGC C+Y
Sbjct: 47  WSTGLCNCFDDCHNCCVTCVCPCITFGQTAEIIDRGSTSCGTSGALYALVMLLTGCQCVY 106

Query: 100 SSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQEYRELKARGFDMSLG 149
           S  YR+KMR QY L+  PC DC  H CC  CAL QEYRELK RGFDMS+G
Sbjct: 107 SCFYRAKMRAQYGLQVSPCSDCCVHCCCQCCALCQEYRELKKRGFDMSIG 156

May act as a negative regulator of cell number.

Zea mays (taxid: 4577)

>sp|D9HP27|CNR11_MAIZE Cell number regulator 11 OS=Zea mays GN=CNR11 PE=2 SV=1

 Score =  127 bits (319), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 66/116 (56%), Positives = 78/116 (67%), Gaps = 2/116 (1%)

Query: 34  QLVEGPWSSGLCDCFSDCSTCCLTCWCPCITFGRIADIVDKGSSSCSVSGALYLVISLVT 93
           Q + G WS GLCDCF D  TCCLT WCPC+TFGR A+IVD+G S+C +SG LY ++S + 
Sbjct: 35  QSMPGEWSVGLCDCFGDLHTCCLTLWCPCVTFGRTAEIVDRG-STCCMSGTLYYLLSTI- 92

Query: 94  GCGCLYSSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQEYRELKARGFDMSLG 149
           G   LY    RS MR QY L+  PC DC  HF C  CAL QEY EL+ RGF M+ G
Sbjct: 93  GWQWLYGCAKRSSMRSQYSLRESPCMDCCVHFWCGPCALCQEYTELQKRGFHMAKG 148

Zea mays (taxid: 4577)

>sp|D9HP19|CNR3_MAIZE Cell number regulator 3 OS=Zea mays GN=CNR3 PE=2 SV=1

 Score =  126 bits (317), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 86/147 (58%), Gaps = 8/147 (5%)

Query: 6   YPNQKFDHQHVATGV-PVAGFQQQHANVHQLVEGPWSSGLCDCFSDCSTCCLTCWCPCIT 64
           YP           GV PVAG         +     WSS L DCF D   CC+T WCPCIT
Sbjct: 2   YPATTPYETASGVGVAPVAGLFPVAGEARE-----WSSRLLDCFDDFDICCMTFWCPCIT 56

Query: 65  FGRIADIVDKGSSSCSVSGALYLVISLVTGCGCLYS-SC-YRSKMRQQYMLKGGPCGDCL 122
           FGR A+IVD G +SC  S AL+ +I  ++G  C ++ SC YR+++R Q+ L   PC D L
Sbjct: 57  FGRTAEIVDHGMTSCGTSAALFALIQWLSGSQCTWAFSCTYRTRLRAQHGLPEAPCADFL 116

Query: 123 AHFCCDTCALSQEYRELKARGFDMSLG 149
            H CC  CAL QEYRELKARG++  LG
Sbjct: 117 VHLCCLHCALCQEYRELKARGYEPVLG 143

Zea mays (taxid: 4577)

>sp|B6TZ45|CNR1_MAIZE Cell number regulator 1 OS=Zea mays GN=CNR1 PE=2 SV=1

 Score =  125 bits (314), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/110 (56%), Positives = 75/110 (68%)

Query: 40  WSSGLCDCFSDCSTCCLTCWCPCITFGRIADIVDKGSSSCSVSGALYLVISLVTGCGCLY 99
           WS+GL  C  D   C +TC CPC+TFG++ADIVDKG+  C  SG +Y +I   TG GCLY
Sbjct: 51  WSTGLFHCMDDPGNCLITCLCPCVTFGQVADIVDKGTCPCIASGLVYGLICASTGMGCLY 110

Query: 100 SSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQEYRELKARGFDMSLG 149
           S  YRSK+R +Y L  G C D L H CC+  AL QEYRELK RGFD+ +G
Sbjct: 111 SCLYRSKLRAEYDLDEGECPDILVHCCCEHLALCQEYRELKNRGFDLGIG 160

Acts as a negative regulator of cell number.

Zea mays (taxid: 4577)

>sp|P0CW98|PCR9_ARATH Protein PLANT CADMIUM RESISTANCE 9 OS=Arabidopsis thaliana GN=PCR9 PE=3 SV=1

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/126 (51%), Positives = 86/126 (68%), Gaps = 4/126 (3%)

Query: 26  QQQHANVHQLVEGPWSSGLCDCFS-DCSTCCLTCWCPCITFGRIADIVDKGSSSCSVSGA 84
           +Q+  N  ++ EG W++GL DC S D STCC T  CPC+ FGRIA+I+DKG +S  ++G 
Sbjct: 3   EQEGKNEKKVTEGQWTTGLYDCLSEDISTCCFTWVCPCVAFGRIAEILDKGETSRGLAGL 62

Query: 85  LYLVISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGDCLAH-FCCDTCALSQEYRELKARG 143
           + + +S + GCG  Y+S YR+K+R QY L   PC D   H FCC  CAL+QE+RELK RG
Sbjct: 63  MVVAMSSI-GCGWYYASKYRAKLRHQYALPEAPCADGAIHCFCC-PCALTQEHRELKHRG 120

Query: 144 FDMSLG 149
            D SLG
Sbjct: 121 LDPSLG 126

May be involved in cadmium resistance.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
224086757	180	predicted protein [Populus trichocarpa]	0.886	0.738	0.631	3e-44
118487250	191	unknown [Populus trichocarpa]	0.886	0.696	0.631	5e-44
147856541	1180	hypothetical protein VITISV_006799 [Viti	0.746	0.094	0.669	6e-44
224099527	181	predicted protein [Populus trichocarpa]	0.88	0.729	0.628	1e-43
225424333	201	PREDICTED: protein PLANT CADMIUM RESISTA	0.926	0.691	0.608	2e-43
297849906	152	predicted protein [Arabidopsis lyrata su	0.833	0.822	0.632	5e-43
225424329	180	PREDICTED: protein PLANT CADMIUM RESISTA	0.866	0.722	0.604	4e-42
297737655	154	unnamed protein product [Vitis vinifera]	0.866	0.844	0.604	6e-42
297801080	154	hypothetical protein ARALYDRAFT_493614 [	0.833	0.811	0.624	6e-42
15223920	152	cadmium resistance protein 2 [Arabidopsi	0.833	0.822	0.616	2e-41

>gi|224086757|ref|XP_002335188.1| predicted protein [Populus trichocarpa] gi|222833095|gb|EEE71572.1| predicted protein [Populus trichocarpa]

 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 89/141 (63%), Positives = 103/141 (73%), Gaps = 8/141 (5%)

Query: 17  ATGVPVAGFQQQHAN-VH-------QLVEGPWSSGLCDCFSDCSTCCLTCWCPCITFGRI 68
            TG PV  F  QH N +H       Q   G WSSGLCDCFSD   CC+TCWCPCITFGRI
Sbjct: 13  VTGYPVGHFINQHHNEIHSHPIQHQQPQPGRWSSGLCDCFSDIPNCCITCWCPCITFGRI 72

Query: 69  ADIVDKGSSSCSVSGALYLVISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGDCLAHFCCD 128
           A+IVDKG++ C+VSGA+Y V+   TGC C+YS  YR+KMR+Q ML+  PC DCL HFCCD
Sbjct: 73  AEIVDKGTTPCAVSGAIYGVLLWFTGCPCIYSCIYRTKMRKQLMLEDRPCNDCLVHFCCD 132

Query: 129 TCALSQEYRELKARGFDMSLG 149
            CAL QEYRELK RGFDM++G
Sbjct: 133 ACALCQEYRELKHRGFDMTMG 153

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487250|gb|ABK95453.1| unknown [Populus trichocarpa]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 89/141 (63%), Positives = 102/141 (72%), Gaps = 8/141 (5%)

Query: 17  ATGVPVAGFQQQHAN-VH-------QLVEGPWSSGLCDCFSDCSTCCLTCWCPCITFGRI 68
            TG PV  F  QH N +H       Q   G WSSGLCDCFSD   CC+TCWCPCITFGRI
Sbjct: 24  VTGYPVGPFINQHHNEIHSHPIQHQQPQPGRWSSGLCDCFSDIPNCCITCWCPCITFGRI 83

Query: 69  ADIVDKGSSSCSVSGALYLVISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGDCLAHFCCD 128
           A+IVDKG++ C+VSGA Y V+   TGC C+YS  YR+KMR+Q ML+  PC DCL HFCCD
Sbjct: 84  AEIVDKGTTPCAVSGATYGVLLWFTGCPCIYSCIYRTKMRKQLMLEDRPCNDCLVHFCCD 143

Query: 129 TCALSQEYRELKARGFDMSLG 149
            CAL QEYRELK RGFDM++G
Sbjct: 144 ACALCQEYRELKHRGFDMTMG 164

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856541|emb|CAN82483.1| hypothetical protein VITISV_006799 [Vitis vinifera]

 Score =  181 bits (460), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 75/112 (66%), Positives = 90/112 (80%)

Query: 39  PWSSGLCDCFSDCSTCCLTCWCPCITFGRIADIVDKGSSSCSVSGALYLVISLVTGCGCL 98
           PWS+GLCDCFSD   CC+T WCPC+TFGRIA+IVD GSSSC+++G LY +++  TGC CL
Sbjct: 29  PWSTGLCDCFSDVPNCCMTFWCPCVTFGRIAEIVDSGSSSCALNGLLYTLVAFTTGCACL 88

Query: 99  YSSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQEYRELKARGFDMSLGN 150
            S   RSKMR+QY L+G  C DCLAH+ C+ CAL QEYRELK RGFDM+LGN
Sbjct: 89  CSCFNRSKMRKQYKLEGNDCKDCLAHYFCEACALCQEYRELKNRGFDMTLGN 140

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099527|ref|XP_002311519.1| predicted protein [Populus trichocarpa] gi|222851339|gb|EEE88886.1| predicted protein [Populus trichocarpa]

 Score =  180 bits (457), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 88/140 (62%), Positives = 102/140 (72%), Gaps = 8/140 (5%)

Query: 18  TGVPVAGFQQQHAN-VHQ-------LVEGPWSSGLCDCFSDCSTCCLTCWCPCITFGRIA 69
           TG PV  F  QH N +H           G WSSGLCDCFSD   CC+TCWCPCITFGRIA
Sbjct: 15  TGHPVGHFTNQHHNEIHSHPIQHQQQQPGRWSSGLCDCFSDIPNCCITCWCPCITFGRIA 74

Query: 70  DIVDKGSSSCSVSGALYLVISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGDCLAHFCCDT 129
           +IVDKG++SC+VSGA+Y V+   TGC C+YS  YR+KMR+Q M +  PC DCL HFCCD 
Sbjct: 75  EIVDKGTTSCAVSGAIYGVLLWFTGCPCIYSCVYRNKMRKQLMFEDRPCNDCLVHFCCDA 134

Query: 130 CALSQEYRELKARGFDMSLG 149
           CAL QEYRELK RGFDM++G
Sbjct: 135 CALCQEYRELKHRGFDMTMG 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424333|ref|XP_002284819.1| PREDICTED: protein PLANT CADMIUM RESISTANCE 2 [Vitis vinifera] gi|297737652|emb|CBI26853.3| unnamed protein product [Vitis vinifera]

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 90/148 (60%), Positives = 110/148 (74%), Gaps = 9/148 (6%)

Query: 11  FDHQHVATGVPVAG----FQQQ--HANVHQLVEGP---WSSGLCDCFSDCSTCCLTCWCP 61
           F+    ATG+PV+     F ++   A +   V+ P   WSSGLCDCFSD   CC+TCWCP
Sbjct: 23  FNGAGTATGIPVSSPEPSFSEKPSQAPLQPKVKAPRVPWSSGLCDCFSDPRNCCITCWCP 82

Query: 62  CITFGRIADIVDKGSSSCSVSGALYLVISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGDC 121
           CITFG+IA+IVDKGSS+C V+GALY +I+ VTGC C YS  YR+KMRQQY+LK  PCGDC
Sbjct: 83  CITFGQIAEIVDKGSSACGVNGALYTLIACVTGCACCYSCFYRAKMRQQYLLKPSPCGDC 142

Query: 122 LAHFCCDTCALSQEYRELKARGFDMSLG 149
           L H CC+ C+L QEYRELK RGFDM++G
Sbjct: 143 LVHCCCEYCSLCQEYRELKNRGFDMTIG 170

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849906|ref|XP_002892834.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297338676|gb|EFH69093.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  179 bits (453), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 79/125 (63%), Positives = 98/125 (78%)

Query: 25  FQQQHANVHQLVEGPWSSGLCDCFSDCSTCCLTCWCPCITFGRIADIVDKGSSSCSVSGA 84
            + QH +     EG WS+G CDCFSDC  CC+T WCPCITFG+IADIVD+G+++C  +GA
Sbjct: 1   MEAQHLHAKPHAEGEWSTGFCDCFSDCKNCCITFWCPCITFGQIADIVDRGATTCGTAGA 60

Query: 85  LYLVISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQEYRELKARGF 144
           LY +I+ VTGCGC+YS  YR KMR QY ++G  CGDCL HFCC+ CAL+Q+YRELK RGF
Sbjct: 61  LYALITAVTGCGCIYSCFYRQKMRAQYNIRGDDCGDCLKHFCCELCALTQQYRELKHRGF 120

Query: 145 DMSLG 149
           DM+LG
Sbjct: 121 DMNLG 125

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424329|ref|XP_002281081.1| PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Vitis vinifera]

 Score =  175 bits (444), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 81/134 (60%), Positives = 101/134 (75%), Gaps = 4/134 (2%)

Query: 16  VATGVPVAGFQQQHANVHQLVEGPWSSGLCDCFSDCSTCCLTCWCPCITFGRIADIVDKG 75
           +ATG+P++        +    E PWS+GLCDCFSD + CC+TCWCPCITFG+IA+IVDKG
Sbjct: 27  MATGIPISS----TGGLQPGTEVPWSTGLCDCFSDVTNCCITCWCPCITFGQIAEIVDKG 82

Query: 76  SSSCSVSGALYLVISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQE 135
           + SC  SGA+Y  ++  T C CL+S  YR+K+R+Q MLK  PCGDCL HFCC+TC+L QE
Sbjct: 83  TVSCFASGAIYAALTYFTTCACLFSCSYRTKLRKQLMLKESPCGDCLVHFCCETCSLCQE 142

Query: 136 YRELKARGFDMSLG 149
           YREL  RGFDMSLG
Sbjct: 143 YRELTHRGFDMSLG 156

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737655|emb|CBI26856.3| unnamed protein product [Vitis vinifera]

 Score =  175 bits (443), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 81/134 (60%), Positives = 101/134 (75%), Gaps = 4/134 (2%)

Query: 16  VATGVPVAGFQQQHANVHQLVEGPWSSGLCDCFSDCSTCCLTCWCPCITFGRIADIVDKG 75
           +ATG+P++        +    E PWS+GLCDCFSD + CC+TCWCPCITFG+IA+IVDKG
Sbjct: 1   MATGIPIS----STGGLQPGTEVPWSTGLCDCFSDVTNCCITCWCPCITFGQIAEIVDKG 56

Query: 76  SSSCSVSGALYLVISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQE 135
           + SC  SGA+Y  ++  T C CL+S  YR+K+R+Q MLK  PCGDCL HFCC+TC+L QE
Sbjct: 57  TVSCFASGAIYAALTYFTTCACLFSCSYRTKLRKQLMLKESPCGDCLVHFCCETCSLCQE 116

Query: 136 YRELKARGFDMSLG 149
           YREL  RGFDMSLG
Sbjct: 117 YRELTHRGFDMSLG 130

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297801080|ref|XP_002868424.1| hypothetical protein ARALYDRAFT_493614 [Arabidopsis lyrata subsp. lyrata] gi|297314260|gb|EFH44683.1| hypothetical protein ARALYDRAFT_493614 [Arabidopsis lyrata subsp. lyrata]

 Score =  175 bits (443), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 78/125 (62%), Positives = 97/125 (77%)

Query: 25  FQQQHANVHQLVEGPWSSGLCDCFSDCSTCCLTCWCPCITFGRIADIVDKGSSSCSVSGA 84
            + QH +     EG WS+G CDCFSDC  CC+TC CPCITFG++ADIVD+G++SC  +GA
Sbjct: 1   MEAQHLHAKPHAEGEWSTGFCDCFSDCKNCCITCLCPCITFGQVADIVDRGTTSCGAAGA 60

Query: 85  LYLVISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQEYRELKARGF 144
           LY +I+++TGCG +YS  YR KMR QY ++G  C DCL HFCC+ CAL+QEYRELK RGF
Sbjct: 61  LYTLIAVITGCGSIYSCFYRGKMRAQYNIRGDGCTDCLKHFCCELCALTQEYRELKHRGF 120

Query: 145 DMSLG 149
           DMSLG
Sbjct: 121 DMSLG 125

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223920|ref|NP_172940.1| cadmium resistance protein 2 [Arabidopsis thaliana] gi|75180217|sp|Q9LQU4.1|PCR2_ARATH RecName: Full=Protein PLANT CADMIUM RESISTANCE 2; Short=AtPCR2 gi|8778226|gb|AAF79235.1|AC006917_20 F10B6.27 [Arabidopsis thaliana] gi|18252925|gb|AAL62389.1| unknown protein [Arabidopsis thaliana] gi|21389643|gb|AAM48020.1| unknown protein [Arabidopsis thaliana] gi|332191116|gb|AEE29237.1| cadmium resistance protein 2 [Arabidopsis thaliana]

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 77/125 (61%), Positives = 97/125 (77%)

Query: 25  FQQQHANVHQLVEGPWSSGLCDCFSDCSTCCLTCWCPCITFGRIADIVDKGSSSCSVSGA 84
            + QH +     EG WS+G CDCFSDC  CC+T WCPCITFG++A+IVD+GS+SC  +GA
Sbjct: 1   MEAQHLHAKPHAEGEWSTGFCDCFSDCKNCCITFWCPCITFGQVAEIVDRGSTSCGTAGA 60

Query: 85  LYLVISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQEYRELKARGF 144
           LY +I++VTGC C+YS  YR KMR QY +KG  C DCL HFCC+ C+L+Q+YRELK RG+
Sbjct: 61  LYALIAVVTGCACIYSCFYRGKMRAQYNIKGDDCTDCLKHFCCELCSLTQQYRELKHRGY 120

Query: 145 DMSLG 149
           DMSLG
Sbjct: 121 DMSLG 125

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
TAIR|locus:504954894	152	AT5G35525 "AT5G35525" [Arabido	0.813	0.802	0.557	1.7e-36
TAIR|locus:2006772	152	PCR2 "AT1G14870" [Arabidopsis	0.813	0.802	0.556	9.2e-36
TAIR|locus:2006767	151	PCR1 "AT1G14880" [Arabidopsis	0.806	0.801	0.544	7.4e-34
UNIPROTKB|B6TYV8	181	CNR2 "Cell number regulator 2"	0.906	0.751	0.479	6e-32
TAIR|locus:2026910	160	PCR11 "AT1G68610" [Arabidopsis	0.733	0.687	0.495	3.2e-26
UNIPROTKB|B6TZ45	191	CNR1 "Cell number regulator 1"	0.826	0.649	0.480	2.2e-25
TAIR|locus:2016625	148	AT1G58320 "AT1G58320" [Arabido	0.813	0.824	0.452	2.3e-23
TAIR|locus:2095002	133	AT3G18470 "AT3G18470" [Arabido	0.76	0.857	0.438	2.1e-22
TAIR|locus:2037458	190	AT1G52200 "AT1G52200" [Arabido	0.986	0.778	0.364	3.9e-21
TAIR|locus:2028526	224	AT1G49030 "AT1G49030" [Arabido	0.733	0.491	0.409	6.3e-21

TAIR|locus:504954894 AT5G35525 "AT5G35525" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 68/122 (55%), Positives = 86/122 (70%)

Query:    28 QHANVHQLVEGPWSSGLCDCFSDXXXXXXXXXXXXXXFGRIADIVDKGSSSCSVSGALYL 87
             QH   +   EG WS+G CDCFSD              FG++ADIVD+G++SC  +GALY+
Sbjct:     4 QHLQANPHAEGEWSTGFCDCFSDCQNCCITWLCPCITFGQVADIVDRGNTSCGTAGALYV 63

Query:    88 VISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQEYRELKARGFDMS 147
             +++ +TGCGCLYS  YR K+R QY ++G  C DCL HFCC+ CAL+QEYRELK RGFDMS
Sbjct:    64 LLAAITGCGCLYSCIYRGKIRAQYNIRGDGCTDCLKHFCCELCALTQEYRELKHRGFDMS 123

Query:   148 LG 149
             LG
Sbjct:   124 LG 125

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2006772 PCR2 "AT1G14870" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 69/124 (55%), Positives = 86/124 (69%)

Query:    26 QQQHANVHQLVEGPWSSGLCDCFSDXXXXXXXXXXXXXXFGRIADIVDKGSSSCSVSGAL 85
             Q  HA  H   EG WS+G CDCFSD              FG++A+IVD+GS+SC  +GAL
Sbjct:     4 QHLHAKPH--AEGEWSTGFCDCFSDCKNCCITFWCPCITFGQVAEIVDRGSTSCGTAGAL 61

Query:    86 YLVISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQEYRELKARGFD 145
             Y +I++VTGC C+YS  YR KMR QY +KG  C DCL HFCC+ C+L+Q+YRELK RG+D
Sbjct:    62 YALIAVVTGCACIYSCFYRGKMRAQYNIKGDDCTDCLKHFCCELCSLTQQYRELKHRGYD 121

Query:   146 MSLG 149
             MSLG
Sbjct:   122 MSLG 125

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2006767 PCR1 "AT1G14880" [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 67/123 (54%), Positives = 83/123 (67%)

Query:    27 QQHANVHQLVEGPWSSGLCDCFSDXXXXXXXXXXXXXXFGRIADIVDKGSSSCSVSGALY 86
             Q HA  H   +G WS+G CDCFSD              FG++A+IVD+GS SC  +GALY
Sbjct:     4 QLHAKPH--AQGEWSTGFCDCFSDCRNCCITLCCPCITFGQVAEIVDRGSKSCCAAGALY 61

Query:    87 LVISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQEYRELKARGFDM 146
             ++I L+T CG +Y+  Y  KMR QY +KG  C DCL HFCC+ CAL+Q+YRELK RGFDM
Sbjct:    62 MLIDLITSCGRMYACFYSGKMRAQYNIKGDGCTDCLKHFCCNLCALTQQYRELKHRGFDM 121

Query:   147 SLG 149
             SLG
Sbjct:   122 SLG 124

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

UNIPROTKB|B6TYV8 CNR2 "Cell number regulator 2" [Zea mays (taxid:4577)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 70/146 (47%), Positives = 89/146 (60%)

Query:    14 QHVATGVPVAG----FQQQHANVHQLV---EGP---WSSGLCDCFSDXXXXXXXXXXXXX 63
             Q +ATG+P +G    +Q   A         + P   WS+GLC+CF D             
Sbjct:    11 QPLATGIPFSGGGGYYQAGGAMAAAFAVQAQAPVAAWSTGLCNCFDDCHNCCVTCVCPCI 70

Query:    64 XFGRIADIVDKGSSSCSVSGALYLVISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGDCLA 123
              FG+ A+I+D+GS+SC  SGALY ++ L+TGC C+YS  YR+KMR QY L+  PC DC  
Sbjct:    71 TFGQTAEIIDRGSTSCGTSGALYALVMLLTGCQCVYSCFYRAKMRAQYGLQVSPCSDCCV 130

Query:   124 HFCCDTCALSQEYRELKARGFDMSLG 149
             H CC  CAL QEYRELK RGFDMS+G
Sbjct:   131 HCCCQCCALCQEYRELKKRGFDMSIG 156

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

TAIR|locus:2026910 PCR11 "AT1G68610" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 56/113 (49%), Positives = 75/113 (66%)

Query:    40 WSSGLCDCFSDXXXXXXXXXXXXXXFGRIADIVDKGSSSCSVSGALYLVISLVTGCG--C 97
             WS+ LC+C+ D              FGRIA++VD+GS+SC VSGA+Y++I ++TG G   
Sbjct:    19 WSTDLCECWMDINSCCLTCWCPCVAFGRIAEVVDRGSTSCGVSGAMYMIIFMLTGYGGSS 78

Query:    98 LYSSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQEYRELKA-RGFDMSLG 149
             LYS  YR+K+R QY LK  PC DC  HFCC+ CAL QEYR+L+  R  D+ +G
Sbjct:    79 LYSCFYRTKLRAQYNLKERPCCDCCVHFCCEPCALCQEYRQLQHNRDLDLVIG 131

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0048235 "pollen sperm cell differentiation" evidence=IEP

UNIPROTKB|B6TZ45 CNR1 "Cell number regulator 1" [Zea mays (taxid:4577)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 62/129 (48%), Positives = 74/129 (57%)

Query:    26 QQQH-ANVHQLVEG----PWSSGLCDCFSDXXXXXXXXXXXXXXFGRIADIVDKGSSSCS 80
             QQQH AN+     G     WS+GL  C  D              FG++ADIVDKG+  C 
Sbjct:    32 QQQHGANMDTSRPGGGLRKWSTGLFHCMDDPGNCLITCLCPCVTFGQVADIVDKGTCPCI 91

Query:    81 VSGALYLVISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQEYRELK 140
              SG +Y +I   TG GCLYS  YRSK+R +Y L  G C D L H CC+  AL QEYRELK
Sbjct:    92 ASGLVYGLICASTGMGCLYSCLYRSKLRAEYDLDEGECPDILVHCCCEHLALCQEYRELK 151

Query:   141 ARGFDMSLG 149
              RGFD+ +G
Sbjct:   152 NRGFDLGIG 160

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

TAIR|locus:2016625 AT1G58320 "AT1G58320" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 57/126 (45%), Positives = 77/126 (61%)

Query:    26 QQQHANVHQLVEGPWSSGLCDCFS-DXXXXXXXXXXXXXXFGRIADIVDKGSSSCSVSGA 84
             +Q+  N  ++ EG W++GL DC S D              FGRIA+I+DKG +S  ++G 
Sbjct:     3 EQEGKNEKKVTEGQWTTGLYDCLSEDISTCCFTWVCPCVAFGRIAEILDKGETSRGLAGL 62

Query:    85 LYLVISLVTGCGCLYSSCYRSKMRQQYMLKGGPCGDCLAH-FCCDTCALSQEYRELKARG 143
             + + +S + GCG  Y+S YR+K+R QY L   PC D   H FCC  CAL+QE+RELK RG
Sbjct:    63 MVVAMSSI-GCGWYYASKYRAKLRHQYALPEAPCADGAIHCFCCP-CALTQEHRELKHRG 120

Query:   144 FDMSLG 149
              D SLG
Sbjct:   121 LDPSLG 126

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2095002 AT3G18470 "AT3G18470" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 50/114 (43%), Positives = 64/114 (56%)

Query:    36 VEGPWSSGLCDCFSDXXXXXXXXXXXXXXFGRIADIVDKGSSSCSVSGALYLVISLVTGC 95
             +E  W+SGL  C  D              FGRIADI D+G + C   G  Y +I  V G 
Sbjct:     1 MEKQWTSGLFSCMEDSETACLTCFCPCVTFGRIADISDEGRTGCGRCGVFYGLICCVVGL 60

Query:    96 GCLYSSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQEYRELKARGFDMSLG 149
              CL+S  YR+K+R ++ L   P  DC+ HF C+ CAL QE+RELK RG D S+G
Sbjct:    61 PCLFSCTYRTKIRSKFGLPESPTSDCVTHFFCECCALCQEHRELKTRGLDPSIG 114

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037458 AT1G52200 "AT1G52200" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 55/151 (36%), Positives = 80/151 (52%)

Query:     2 NSSSYPNQKFDHQHVATGVPVAGF---QQQHANVHQLVEGPWSSGLCDCFSDXXXXXXXX 58
             +++  P Q+    +  T VPV+ F     Q ANV+  V  PWS+GL DC +D        
Sbjct:    12 SNNGLPVQQPGTPNQRTRVPVSQFAPPNYQQANVNLSVGRPWSTGLFDCQADQANAVLTT 71

Query:    59 XXXXXXFGRIADIVDKGSSSCSVSGALYLVISLVTGCGCLYSSCYRSKMRQQYMLKGGPC 118
                   FG+IA+++D+G  +C +   +YL++        +  S YR KMR+++ L   P 
Sbjct:    72 IVPCVTFGQIAEVMDEGEMTCPLGTFMYLLMMPALCSHWVMGSKYREKMRRKFNLVEAPY 131

Query:   119 GDCLAHFCCDTCALSQEYRELKARGFDMSLG 149
              DC +H  C  C+L QEYRELK R  D SLG
Sbjct:   132 SDCASHVLCPCCSLCQEYRELKIRNLDPSLG 162

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006979 "response to oxidative stress" evidence=RCA;IMP

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2028526 AT1G49030 "AT1G49030" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 45/110 (40%), Positives = 66/110 (60%)

Query:    40 WSSGLCDCFSDXXXXXXXXXXXXXXFGRIADIVDKGSSSCSVSGALYLVISLVTGCGCLY 99
             W+SGL DC +D              FG+IA+++D+G++SC  +G LY +I  +    C+Y
Sbjct:    88 WTSGLFDCMNDGENALITCCFPFVTFGQIAEVIDEGATSCGTAGMLYGLICCLFAIPCVY 147

Query:   100 SSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQEYRELKARGFDMSLG 149
             +  +R+K+R +Y L   P  D + H  C+ CAL QEYRELK RG D S+G
Sbjct:   148 TCTFRTKLRSKYGLPDAPAPDWITHCFCEYCALCQEYRELKNRGLDPSIG 197

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
D9HP25	CNR9_MAIZE	No assigned EC number	0.5442	0.9466	0.8114	N/A	no
D9HP26	CNR10_MAIZE	No assigned EC number	0.5570	0.8933	0.8535	N/A	no
Q9LQU4	PCR2_ARATH	No assigned EC number	0.616	0.8333	0.8223	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030565001 SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (191 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	150
TIGR01571	104	TIGR01571, A_thal_Cys_rich, uncharacterized Cys-ri	9e-30
pfam04749	99	pfam04749, PLAC8, PLAC8 family	2e-29

>gnl|CDD|233473 TIGR01571, A_thal_Cys_rich, uncharacterized Cys-rich domain

 Score =  103 bits (259), Expect = 9e-30
 Identities = 41/103 (39%), Positives = 57/103 (55%)

Query: 38  GPWSSGLCDCFSDCSTCCLTCWCPCITFGRIADIVDKGSSSCSVSGALYLVISLVTGCGC 97
             WS+GL DC  D   C    +CPC  FG+IA+ +   +  C   G   + +S + G   
Sbjct: 1   SNWSTGLFDCCEDIRLCLCGLFCPCCLFGQIAETLGTFAGECLCGGLTAIAMSALCGFCG 60

Query: 98  LYSSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQEYRELK 140
            Y+   R K+R++Y ++G PC DCL H  C  CAL QE+RELK
Sbjct: 61  CYTCFIRIKLREKYGIQGAPCDDCLTHLFCCFCALCQEHRELK 103

This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family. Length = 104

>gnl|CDD|218240 pfam04749, PLAC8, PLAC8 family

 Score =  102 bits (257), Expect = 2e-29
 Identities = 50/100 (50%), Positives = 63/100 (63%), Gaps = 1/100 (1%)

Query: 40  WSSGLCDCFSDCSTCCLTCWCPCITFGRIADIVDKGSSSCSVSGALYLVISLVTGCGCLY 99
           WS+GL DCF D  TCCL  +CPCI FGR A+ +D GS S   S  LY ++  +     LY
Sbjct: 1   WSTGLFDCFDDIGTCCLGLFCPCILFGRTAERLDDGSRSEDGSCCLYGLLYGL-LGFWLY 59

Query: 100 SSCYRSKMRQQYMLKGGPCGDCLAHFCCDTCALSQEYREL 139
           S   R+K+R++Y ++G PC DCL H  C  CAL QE REL
Sbjct: 60  SCFTRTKIREKYNIEGSPCDDCLVHCFCPPCALCQEDREL 99

This family includes the Placenta-specific gene 8 protein. Length = 99

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
TIGR01571	104	A_thal_Cys_rich uncharacterized Cys-rich domain. T	100.0
PF04749	106	PLAC8: PLAC8 family; InterPro: IPR006461 This grou	99.96

>TIGR01571 A_thal_Cys_rich uncharacterized Cys-rich domain

Probab=100.00  E-value=1.4e-34  Score=207.62  Aligned_cols=104  Identities=39%  Similarity=0.817  Sum_probs=94.7

Q ss_pred             CCCCCCCccccCCCCcccccCchhHHHHHHHHHHhcCCCCCCchhHHHHHHHHHhhccccccchhHHHHHHHHhCCCCCC
Q 031916           38 GPWSSGLCDCFSDCSTCCLTCWCPCITFGRIADIVDKGSSSCSVSGALYLVISLVTGCGCLYSSCYRSKMRQQYMLKGGP  117 (150)
Q Consensus        38 ~~W~~gLf~C~~d~~~C~~~~~CPC~~~g~~~~rl~~g~~~C~~~~~l~~~~~~~~g~~~~~~~~~R~~iR~kygI~Gs~  117 (150)
                      ++|++|||||++|+++|++++||||+++|++++|++++..+|...++++++++.+.++.+++.+.+|++||+||||+|+.
T Consensus         1 ~~W~~gL~dC~~d~~~C~~~~~CPc~~~g~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~R~~~R~ry~i~gs~   80 (104)
T TIGR01571         1 SNWSTGLFDCCEDIRLCLCGLFCPCCLFGQIAETLGTFAGECLCGGLTAIAMSALCGFCGCYTCFIRIKLREKYGIQGAP   80 (104)
T ss_pred             CCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCCC
Confidence            58999999999999999999999999999999999977778887776666655556677889999999999999999999


Q ss_pred             cchhhHhhcchhHHHHHHHHHHHH
Q 031916          118 CGDCLAHFCCDTCALSQEYRELKA  141 (150)
Q Consensus       118 ~~Dc~~~~cC~~Cal~Q~~rEl~~  141 (150)
                      ++|+++++||++|+|+|++||||+
T Consensus        81 ~~D~~~~~~C~~C~lcQ~~RElk~  104 (104)
T TIGR01571        81 CDDCLTHLFCCFCALCQEHRELKM  104 (104)
T ss_pred             cccchHHHHhhhHHHHHHHHHHhC
Confidence            999999999999999999999984

This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.

>PF04749 PLAC8: PLAC8 family; InterPro: IPR006461 This group of sequences are described by a region of about 170 amino acids

Probab=99.96  E-value=1.2e-30  Score=184.93  Aligned_cols=99  Identities=43%  Similarity=1.032  Sum_probs=84.0

Q ss_pred             CCCCCccccCCCCcccccCchhHHHHHHHHHHhcCCC-------CCCchhHHHHHHHHHhhccccccchhHHHHHHHHhC
Q 031916           40 WSSGLCDCFSDCSTCCLTCWCPCITFGRIADIVDKGS-------SSCSVSGALYLVISLVTGCGCLYSSCYRSKMRQQYM  112 (150)
Q Consensus        40 W~~gLf~C~~d~~~C~~~~~CPC~~~g~~~~rl~~g~-------~~C~~~~~l~~~~~~~~g~~~~~~~~~R~~iR~kyg  112 (150)
                      |++|||||++|+++|++++||||++++++++|++.+.       ..|....+++.++.++ ++.+++.+.+|++||+|||
T Consensus         1 W~~gl~~C~~d~~~c~~~~~cPc~~~~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~~~-~l~~~~~~~~R~~iR~ry~   79 (106)
T PF04749_consen    1 WSTGLCDCFSDPGSCCLACFCPCCSFGQNAERLGDGPRSRGPAFGSCCLCFCCFGCAACL-GLGWCYGCSLRQQIRERYG   79 (106)
T ss_pred             CCCCCCCcCCChHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCccHHHHHHHHHHHHHH-HHhHhhhhhHHHHHHHHhC
Confidence            9999999999999999999999999999999998864       3455444444332212 3445588999999999999


Q ss_pred             CCCCCcchhhHhhcchhHHHHHHHHHH
Q 031916          113 LKGGPCGDCLAHFCCDTCALSQEYREL  139 (150)
Q Consensus       113 I~Gs~~~Dc~~~~cC~~Cal~Q~~rEl  139 (150)
                      |+|+.++|+++++||+||||+||+|||
T Consensus        80 I~g~~~~D~~~~~~C~~Cal~Q~~rEl  106 (106)
T PF04749_consen   80 IQGSCCEDCCCSCCCPPCALCQEAREL  106 (106)
T ss_pred             CCCCChhhhHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999999999996

These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. It is common in plants but found also in Homo sapiens (Human), Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	150
1kil_E	49	Complexin I snare-complex binding region; helix bo	85.48
3rk3_E	63	Complexin-1; snare proteins, membrane fusion, memb	84.84
1l4a_E	79	Synaphin A; snare, snare complex, membrane fusion,	82.67

>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1

Probab=85.48  E-value=0.39  Score=28.93  Aligned_cols=12  Identities=25%  Similarity=0.564  Sum_probs=10.7

Q ss_pred             hHHHHHHHHhCC
Q 031916          102 CYRSKMRQQYML  113 (150)
Q Consensus       102 ~~R~~iR~kygI  113 (150)
                      ..|+.||.||||
T Consensus        38 ~mRq~IRdKY~i   49 (49)
T 1kil_E           38 VMRQGIRDKYGI   49 (49)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHhcCC
Confidence            479999999998

>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g

Probab=84.84  E-value=0.45  Score=29.97  Aligned_cols=14  Identities=29%  Similarity=0.524  Sum_probs=11.8

Q ss_pred             hHHHHHHHHhCCCC
Q 031916          102 CYRSKMRQQYMLKG  115 (150)
Q Consensus       102 ~~R~~iR~kygI~G  115 (150)
                      .+|+.||.||||+-
T Consensus        41 ~mRQ~IRdKY~ikK   54 (63)
T 3rk3_E           41 AVRQGIRDKYGIKK   54 (63)
T ss_dssp             HHHHHHHHHHTCC-
T ss_pred             HHHHHHHHHhccch
Confidence            47999999999984

>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=82.67  E-value=0.61  Score=30.66  Aligned_cols=14  Identities=36%  Similarity=0.520  Sum_probs=11.9

Q ss_pred             hHHHHHHHHhCCCC
Q 031916          102 CYRSKMRQQYMLKG  115 (150)
Q Consensus       102 ~~R~~iR~kygI~G  115 (150)
                      .+|+.||.||||+-
T Consensus        45 ~mRq~IRdKY~ikK   58 (79)
T 1l4a_E           45 EMRQTIRDKYGLKK   58 (79)
T ss_dssp             HHHHHHHHHHTCC-
T ss_pred             HHHHHHHHHhcccc
Confidence            47999999999984

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00