Citrus Sinensis ID: 031937

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
MSMIPSFFGKRRSSVFDPFSLDVWDFSSSSQFPQETSAFVNTRVDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMENGVLTVTVPKAEEAKKSNVRAVQISG
ccccccccccccccccccccccccccccccccccccccccccEEEEEEcccEEEEEEEccccccccEEEEEEcccEEEEEEEEEcEEEEccccEEEEEEEccEEEEEEEcccccccccEEEEEcccEEEEEEcccccccccccEEEEEcc
ccccccHcccccccccccccccccccccccccccHHHHHHccccccccccccEEEEEEccccccccEEEEEEcccEEEEEccEcEEEccccccEEEEEEccccEEEEEEccccccHHEEEEEEcccEEEEEEcccccccccccEEEEEcc
msmipsffgkrrssvfdpfsldvwdfssssqfpqetSAFVNtrvdwketpeahvfkadlpgvkkeevkveveddrvlqisgqrkiekedrndtwhrverssgafsrrfrlpenvevdqIKASMENGVLTVTvpkaeeakksNVRAVQISG
msmipsffgkrrssvfDPFSLDVWDFssssqfpqeTSAFVNTRVDWKETpeahvfkadlpgvkkeevkveveddrvlqisgqrkiekedrndtwhrverssgafsrrfrlpenvevdqikasmengvltvtvpkaeeakksnvravqisg
MSMIPSFFGKRRSSVFDPFSLDVWDFSSSSQFPQETSAFVNTRVDWKETPEAHVFKADLPGvkkeevkveveDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMENGVLTVTVPKAEEAKKSNVRAVQISG
**************VFDPFSLDVWDFS**********AFVNTRVDWKETPEAHVFKADL*******************************************************************************************
MSMIPS*FGKRRSSVFDPFSLDVWDFSSSSQFPQETSAFVNTRVDWKETPEAHVFKADLPGVKKEEVKVEVEDDRV*******************RVERSSGAFSRRFRLPENVEVDQIKASMENGVLTVTVP**********RAVQISG
MSMIPSFFGKRRSSVFDPFSLDVWDFSSSSQFPQETSAFVNTRVDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMENGVLTVTVPKAEEAK***********
*************SVFDPFSLDVWDFSSSSQFPQETSAFVNTRVDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMENGVLTVTVPKAEEAKKSNVRAVQI**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSMIPSFFGKRRSSVFDPFSLDVWDFSSSSQFPQETSAFVNTRVDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMENGVLTVTVPKAEEAKKSNVRAVQISG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query150 2.2.26 [Sep-21-2011]
P04793153 17.5 kDa class I heat sho no no 0.993 0.973 0.753 1e-61
P27880158 18.2 kDa class I heat sho N/A no 0.993 0.943 0.735 1e-61
P02519153 17.3 kDa class I heat sho yes no 0.993 0.973 0.753 4e-61
P05478161 18.5 kDa class I heat sho no no 0.993 0.925 0.716 1e-60
P04794154 17.5 kDa class I heat sho no no 0.993 0.967 0.729 1e-60
Q9LNW0157 17.8 kDa class I heat sho yes no 1.0 0.955 0.713 1e-58
P04795154 17.6 kDa class I heat sho no no 0.993 0.967 0.703 8e-58
P19243158 18.1 kDa class I heat sho N/A no 0.993 0.943 0.748 2e-55
P27879143 18.1 kDa class I heat sho N/A no 0.886 0.930 0.729 5e-54
Q9XIE3155 17.6 kDa class I heat sho no no 1.0 0.967 0.696 5e-54
>sp|P04793|HSP13_SOYBN 17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1 Back     alignment and function desciption
 Score =  234 bits (598), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 116/154 (75%), Positives = 133/154 (86%), Gaps = 5/154 (3%)

Query: 1   MSMIPSFFGKRRSSVFDPFSLDVWDFSSSSQFPQ----ETSAFVNTRVDWKETPEAHVFK 56
           MS+IPS FG RRS+VFDPFSLDVWD      FP     E SAFVNTRVDWKETPEAHVF+
Sbjct: 1   MSLIPSIFGGRRSNVFDPFSLDVWDPFKDFHFPTSLSAENSAFVNTRVDWKETPEAHVFE 60

Query: 57  ADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEV 116
           AD+PG+KKEEVKV++EDDRVLQISG+R +EKED+NDTWHRVERSSG F RRFRLPEN +V
Sbjct: 61  ADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKV 120

Query: 117 DQIKASMENGVLTVTVPKAEEAKKSNVRAVQISG 150
           +Q+KASMENGVLTVTVPK EE KK +V+A++ISG
Sbjct: 121 EQVKASMENGVLTVTVPK-EEVKKPDVKAIEISG 153

Glycine max (taxid: 3847)
>sp|P27880|HSP12_MEDSA 18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1 Back     alignment and function description
>sp|P02519|HSP11_SOYBN 17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1 Back     alignment and function description
>sp|P05478|HSP16_SOYBN 18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1 Back     alignment and function description
>sp|P04794|HSP14_SOYBN 17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1 Back     alignment and function description
>sp|Q9LNW0|HS178_ARATH 17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1 Back     alignment and function description
>sp|P04795|HSP15_SOYBN 17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1 Back     alignment and function description
>sp|P19243|HSP11_PEA 18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1 Back     alignment and function description
>sp|P27879|HSP11_MEDSA 18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1 Back     alignment and function description
>sp|Q9XIE3|HS17A_ARATH 17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query150
224104357156 predicted protein [Populus trichocarpa] 1.0 0.961 0.743 1e-61
357475983159 18.2 kDa class I heat shock protein [Med 0.993 0.937 0.743 2e-61
351725131153 uncharacterized protein LOC100527912 [Gl 0.993 0.973 0.766 9e-61
357498815159 18.2 kDa class I heat shock protein [Med 0.993 0.937 0.731 1e-60
38639431154 17.5 kDa class I heat shock protein [Car 0.993 0.967 0.761 3e-60
357498829159 18.2 kDa class I heat shock protein [Med 0.993 0.937 0.718 4e-60
356521398153 PREDICTED: 17.5 kDa class I heat shock p 0.993 0.973 0.753 6e-60
123556158 RecName: Full=18.2 kDa class I heat shoc 0.993 0.943 0.735 8e-60
284433776158 heat-shock protein [Jatropha curcas] 0.986 0.936 0.75 9e-60
388505996161 unknown [Medicago truncatula] 0.993 0.925 0.734 1e-59
>gi|224104357|ref|XP_002313410.1| predicted protein [Populus trichocarpa] gi|222849818|gb|EEE87365.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 116/156 (74%), Positives = 133/156 (85%), Gaps = 6/156 (3%)

Query: 1   MSMIPSFFGKRRSSVFDPFSLDVWDFSSSSQFPQ------ETSAFVNTRVDWKETPEAHV 54
           MSMIPSFFG RRSS+FDPFSLDVWD      FP       E SAFVNTR+DWKETPEAHV
Sbjct: 1   MSMIPSFFGNRRSSIFDPFSLDVWDPLKDFPFPSPSFPRDENSAFVNTRIDWKETPEAHV 60

Query: 55  FKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENV 114
           FKADLPG++KEEVKV++EDDRVLQISG+R +EKED+NDTWHRVERSSG FSRRFRLPEN 
Sbjct: 61  FKADLPGLRKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFSRRFRLPENT 120

Query: 115 EVDQIKASMENGVLTVTVPKAEEAKKSNVRAVQISG 150
           +++Q+KASMENGVLTVTVPK E  KK  V++++ISG
Sbjct: 121 KMNQVKASMENGVLTVTVPKEEAVKKPEVKSIEISG 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357475983|ref|XP_003608277.1| 18.2 kDa class I heat shock protein [Medicago truncatula] gi|87240494|gb|ABD32352.1| Heat shock protein Hsp20 [Medicago truncatula] gi|355509332|gb|AES90474.1| 18.2 kDa class I heat shock protein [Medicago truncatula] gi|388515885|gb|AFK46004.1| unknown [Medicago truncatula] gi|388519103|gb|AFK47613.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|351725131|ref|NP_001235546.1| uncharacterized protein LOC100527912 [Glycine max] gi|255633534|gb|ACU17125.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357498815|ref|XP_003619696.1| 18.2 kDa class I heat shock protein [Medicago truncatula] gi|355494711|gb|AES75914.1| 18.2 kDa class I heat shock protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|38639431|gb|AAR25848.1| 17.5 kDa class I heat shock protein [Carica papaya] Back     alignment and taxonomy information
>gi|357498829|ref|XP_003619703.1| 18.2 kDa class I heat shock protein [Medicago truncatula] gi|355494718|gb|AES75921.1| 18.2 kDa class I heat shock protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356521398|ref|XP_003529343.1| PREDICTED: 17.5 kDa class I heat shock protein-like [Glycine max] gi|123538|sp|P04793.1|HSP13_SOYBN RecName: Full=17.5 kDa class I heat shock protein; AltName: Full=HSP 17.5-M gi|169983|gb|AAB03893.1| 17.5 kd heat shock protein Gmhsp17.6L [Glycine max] Back     alignment and taxonomy information
>gi|123556|sp|P27880.1|HSP12_MEDSA RecName: Full=18.2 kDa class I heat shock protein gi|19618|emb|CAA41547.1| heat shock protein [Medicago sativa] Back     alignment and taxonomy information
>gi|284433776|gb|ADB85094.1| heat-shock protein [Jatropha curcas] Back     alignment and taxonomy information
>gi|388505996|gb|AFK41064.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query150
TAIR|locus:2042977153 AT2G29500 "AT2G29500" [Arabido 0.993 0.973 0.681 3.1e-51
TAIR|locus:2024997157 AT1G07400 [Arabidopsis thalian 1.0 0.955 0.668 9.5e-50
TAIR|locus:2025921155 AT1G59860 [Arabidopsis thalian 1.0 0.967 0.638 3.7e-48
TAIR|locus:2075256156 HSP17.4 "heat shock protein 17 0.993 0.955 0.585 1.5e-44
TAIR|locus:2174269161 HSP18.2 "heat shock protein 18 0.993 0.925 0.587 6.4e-44
UNIPROTKB|Q943E6150 HSP16.9B "16.9 kDa class I hea 0.926 0.926 0.646 1e-43
UNIPROTKB|P27777150 HSP16.9A "16.9 kDa class I hea 0.926 0.926 0.639 2.2e-43
UNIPROTKB|Q84Q77161 HSP17.9A "17.9 kDa class I hea 0.893 0.832 0.584 2.5e-43
TAIR|locus:2024862157 AT1G53540 [Arabidopsis thalian 0.993 0.949 0.588 3.5e-43
UNIPROTKB|Q84Q72161 HSP18.1 "18.1 kDa class I heat 0.893 0.832 0.577 8.5e-43
TAIR|locus:2042977 AT2G29500 "AT2G29500" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 105/154 (68%), Positives = 125/154 (81%)

Query:     1 MSMIPSFFGK-RRSSVFDPFSLDVWD-FS--SSSQFPQETSAFVNTRVDWKETPEAHVFK 56
             MSMIPSFF   RRS++FDPFSLDVWD F   +SS   +E SA VN RVDW+ETPEAHVFK
Sbjct:     1 MSMIPSFFNNNRRSNIFDPFSLDVWDPFKELTSSSLSRENSAIVNARVDWRETPEAHVFK 60

Query:    57 ADLPGXXXXXXXXXXXDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEV 116
             ADLPG           +D VL+ISG+R +EKED+NDTWHRVERSSG F+RRFRLPENV++
Sbjct:    61 ADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKM 120

Query:   117 DQIKASMENGVLTVTVPKAEEAKKSNVRAVQISG 150
             DQ+KA+MENGVLTVTVPKAE  KK++V+++QISG
Sbjct:   121 DQVKAAMENGVLTVTVPKAE-TKKADVKSIQISG 153
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0009408 "response to heat" evidence=IEP;ISS;RCA
GO:0006979 "response to oxidative stress" evidence=IEP
GO:0009644 "response to high light intensity" evidence=IEP;RCA
GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA
GO:0006457 "protein folding" evidence=RCA
GO:0010286 "heat acclimation" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
TAIR|locus:2024997 AT1G07400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025921 AT1G59860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075256 HSP17.4 "heat shock protein 17.4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174269 HSP18.2 "heat shock protein 18.2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q943E6 HSP16.9B "16.9 kDa class I heat shock protein 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|P27777 HSP16.9A "16.9 kDa class I heat shock protein 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q84Q77 HSP17.9A "17.9 kDa class I heat shock protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2024862 AT1G53540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q84Q72 HSP18.1 "18.1 kDa class I heat shock protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q84Q77HS17A_ORYSJNo assigned EC number0.61300.95330.8881yesno
Q9LNW0HS178_ARATHNo assigned EC number0.71331.00.9554yesno
P19243HSP11_PEANo assigned EC number0.74840.99330.9430N/Ano
Q943E6HS16B_ORYSJNo assigned EC number0.72100.92660.9266nono
Q943E7HS16C_ORYSJNo assigned EC number0.70740.920.9261nono
P04794HSP14_SOYBNNo assigned EC number0.72900.99330.9675nono
P04795HSP15_SOYBNNo assigned EC number0.70320.99330.9675nono
P30221HSP11_SOLLCNo assigned EC number0.70320.99330.9675N/Ano
P27880HSP12_MEDSANo assigned EC number0.73580.99330.9430N/Ano
P12810HS16A_WHEATNo assigned EC number0.65100.920.9139N/Ano
O82012HSP12_SOLPENo assigned EC number0.71970.980.9545N/Ano
O82011HSP11_SOLPENo assigned EC number0.71610.99330.9675N/Ano
P04793HSP13_SOYBNNo assigned EC number0.75320.99330.9738nono
P02519HSP11_SOYBNNo assigned EC number0.75320.99330.9738yesno
Q41560HS16B_WHEATNo assigned EC number0.64420.920.9139N/Ano
Q9ZW31HS17B_ARATHNo assigned EC number0.74020.99330.9738nono
P05478HSP16_SOYBNNo assigned EC number0.71600.99330.9254nono
P27879HSP11_MEDSANo assigned EC number0.72910.88660.9300N/Ano
P27777HS16A_ORYSJNo assigned EC number0.71420.92660.9266nono
Q05832HSP11_CHERUNo assigned EC number0.63970.980.9130N/Ano
P27397HSP12_DAUCANo assigned EC number0.65620.99330.9371N/Ano
P27396HSP11_DAUCANo assigned EC number0.69620.99330.9490N/Ano
P30693HSP11_HELANNo assigned EC number0.69281.00.9803N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query150
cd0647292 cd06472, ACD_ScHsp26_like, Alpha crystallin domain 2e-52
pfam00011101 pfam00011, HSP20, Hsp20/alpha crystallin family 3e-40
cd0646488 cd06464, ACD_sHsps-like, Alpha-crystallin domain ( 1e-35
COG0071146 COG0071, IbpA, Molecular chaperone (small heat sho 2e-29
cd0647193 cd06471, ACD_LpsHSP_like, Group of bacterial prote 9e-29
cd0029880 cd00298, ACD_sHsps_p23-like, This domain family in 2e-25
cd0647090 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain 1e-13
cd0652683 cd06526, metazoan_ACD, Alpha-crystallin domain (AC 9e-13
cd0647883 cd06478, ACD_HspB4-5-6, Alpha-crystallin domain fo 2e-04
cd0647586 cd06475, ACD_HspB1_like, Alpha crystallin domain ( 0.002
cd0649786 cd06497, ACD_alphaA-crystallin_HspB4, Alpha-crysta 0.004
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information 
 Score =  160 bits (408), Expect = 2e-52
 Identities = 72/92 (78%), Positives = 82/92 (89%)

Query: 43  RVDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSG 102
           RVDWKETPEAHVFKAD+PGVKKE+VKVEVED RVL+ISG+RK E+E + D WHRVERSSG
Sbjct: 1   RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSG 60

Query: 103 AFSRRFRLPENVEVDQIKASMENGVLTVTVPK 134
            F RRFRLPEN + D++KA +ENGVLTVTVPK
Sbjct: 61  RFVRRFRLPENADADEVKAFLENGVLTVTVPK 92

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative stress. Also belonging to this group is wheat HSP16.9 which differs in quaternary structure from the shell-type particles of ScHsp26, it assembles as a dodecameric double disc, with each disc organized as a trimer of dimers. Length = 92
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family Back     alignment and domain information
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>gnl|CDD|107233 cd06478, ACD_HspB4-5-6, Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20 Back     alignment and domain information
>gnl|CDD|107230 cd06475, ACD_HspB1_like, Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins Back     alignment and domain information
>gnl|CDD|107245 cd06497, ACD_alphaA-crystallin_HspB4, Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 150
PRK11597142 heat shock chaperone IbpB; Provisional 99.97
PRK10743137 heat shock protein IbpA; Provisional 99.97
COG0071146 IbpA Molecular chaperone (small heat shock protein 99.96
cd0647292 ACD_ScHsp26_like Alpha crystallin domain (ACD) fou 99.96
PF00011102 HSP20: Hsp20/alpha crystallin family This prints e 99.94
cd0647193 ACD_LpsHSP_like Group of bacterial proteins contai 99.93
cd0647090 ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun 99.93
cd0649786 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai 99.91
cd0647883 ACD_HspB4-5-6 Alpha-crystallin domain found in alp 99.89
cd0647981 ACD_HspB7_like Alpha crystallin domain (ACD) found 99.89
cd0649884 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai 99.89
cd0647586 ACD_HspB1_like Alpha crystallin domain (ACD) found 99.88
cd0648187 ACD_HspB9_like Alpha crystallin domain (ACD) found 99.88
cd0647683 ACD_HspB2_like Alpha crystallin domain (ACD) found 99.88
cd0646488 ACD_sHsps-like Alpha-crystallin domain (ACD) of al 99.87
cd0648287 ACD_HspB10 Alpha crystallin domain (ACD) found in 99.86
cd0647783 ACD_HspB3_Like Alpha crystallin domain (ACD) found 99.85
cd0652683 metazoan_ACD Alpha-crystallin domain (ACD) of meta 99.85
KOG0710196 consensus Molecular chaperone (small heat-shock pr 99.81
cd0648091 ACD_HspB8_like Alpha-crystallin domain (ACD) found 99.76
KOG3591173 consensus Alpha crystallins [Posttranslational mod 99.7
cd0029880 ACD_sHsps_p23-like This domain family includes the 99.6
cd0646978 p23_DYX1C1_like p23_like domain found in proteins 99.37
PF05455177 GvpH: GvpH; InterPro: IPR008633 This family consis 99.16
cd0646384 p23_like Proteins containing this p23_like domain 99.08
cd0646684 p23_CS_SGT1_like p23_like domain similar to the C- 98.86
PF0496979 CS: CS domain; InterPro: IPR017447 The function of 98.71
cd06465108 p23_hB-ind1_like p23_like domain found in human (h 98.43
PF08190328 PIH1: pre-RNA processing PIH1/Nop17 98.24
cd0648984 p23_CS_hSgt1_like p23_like domain similar to the C 98.19
cd0648887 p23_melusin_like p23_like domain similar to the C- 98.05
cd0646892 p23_CacyBP p23_like domain found in proteins simil 98.03
cd0646785 p23_NUDC_like p23_like domain of NUD (nuclear dist 97.97
cd0649385 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear 97.88
cd0649493 p23_NUDCD2_like p23-like NUD (nuclear distribution 97.63
cd00237106 p23 p23 binds heat shock protein (Hsp)90 and parti 97.59
KOG1309196 consensus Suppressor of G2 allele of skp1 [Signal 97.25
PLN03088 356 SGT1, suppressor of G2 allele of SKP1; Provisional 97.15
cd0649087 p23_NCB5OR p23_like domain found in NAD(P)H cytoch 96.75
cd0649287 p23_mNUDC_like p23-like NUD (nuclear distribution) 96.39
cd06495102 p23_NUDCD3_like p23-like NUD (nuclear distribution 96.25
KOG2265179 consensus Nuclear distribution protein NUDC [Signa 88.54
PF14913194 DPCD: DPCD protein family 87.77
KOG3158180 consensus HSP90 co-chaperone p23 [Posttranslationa 84.41
cd0648287 ACD_HspB10 Alpha crystallin domain (ACD) found in 83.61
KOG1667320 consensus Zn2+-binding protein Melusin/RAR1, conta 81.7
cd0647090 ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun 80.48
>PRK11597 heat shock chaperone IbpB; Provisional Back     alignment and domain information 
Probab=99.97  E-value=3.3e-30  Score=182.83  Aligned_cols=105  Identities=21%  Similarity=0.357  Sum_probs=92.4

Q ss_pred             cccceeEEEE-cCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccC
Q 031937           39 FVNTRVDWKE-TPEAHVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVD  117 (150)
Q Consensus        39 ~~~p~~dv~e-~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~  117 (150)
                      ...|++||+| ++++|+|.++|||++++||+|.+++ +.|+|+|++..  ++++.+|+++|+.+|+|+|+|.||.+||.+
T Consensus        30 ~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~-~~LtI~ge~~~--~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~  106 (142)
T PRK11597         30 QSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEG-TRLTVKGTPEQ--PEKEVKWLHQGLVNQPFSLSFTLAENMEVS  106 (142)
T ss_pred             CCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEEC-CEEEEEEEEcc--ccCCCcEEEEEEeCcEEEEEEECCCCcccC
Confidence            3459999998 4779999999999999999999996 69999999764  345678999999999999999999999998


Q ss_pred             CeeEEEeCCEEEEEEeCcCcccCCCceEEecC
Q 031937          118 QIKASMENGVLTVTVPKAEEAKKSNVRAVQIS  149 (150)
Q Consensus       118 ~i~A~~~~GvL~I~lpK~~~~~~~~~~~I~I~  149 (150)
                        +|+|+||||+|+|||.. ++..+.++|+|+
T Consensus       107 --~A~~~nGVL~I~lPK~~-~~~~~~rkI~I~  135 (142)
T PRK11597        107 --GATFVNGLLHIDLIRNE-PEAIAPQRIAIS  135 (142)
T ss_pred             --cCEEcCCEEEEEEeccC-ccccCCcEEEEC
Confidence              79999999999999985 445556899986

>PRK10743 heat shock protein IbpA; Provisional Back     alignment and domain information
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins Back     alignment and domain information
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry Back     alignment and domain information
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18 Back     alignment and domain information
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa) Back     alignment and domain information
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20 Back     alignment and domain information
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins Back     alignment and domain information
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa) Back     alignment and domain information
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins Back     alignment and domain information
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins Back     alignment and domain information
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins Back     alignment and domain information
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins Back     alignment and domain information
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins Back     alignment and domain information
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps) Back     alignment and domain information
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21 Back     alignment and domain information
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins Back     alignment and domain information
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1 Back     alignment and domain information
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [] Back     alignment and domain information
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1 Back     alignment and domain information
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1) Back     alignment and domain information
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown Back     alignment and domain information
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins Back     alignment and domain information
>PF08190 PIH1: pre-RNA processing PIH1/Nop17 Back     alignment and domain information
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins Back     alignment and domain information
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins Back     alignment and domain information
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP) Back     alignment and domain information
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins Back     alignment and domain information
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins Back     alignment and domain information
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins Back     alignment and domain information
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor Back     alignment and domain information
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms] Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins Back     alignment and domain information
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins Back     alignment and domain information
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins Back     alignment and domain information
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms] Back     alignment and domain information
>PF14913 DPCD: DPCD protein family Back     alignment and domain information
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins Back     alignment and domain information
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only] Back     alignment and domain information
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query150
1gme_A151 Crystal Structure And Assembly Of An Eukaryotic Sma 4e-40
2byu_A101 Negative Stain Em Reconstruction Of M.Tuberculosis 4e-32
2h50_A93 Multiple Distinct Assemblies Reveal Conformational 8e-30
3gt6_A103 Crystal Structure Of The Hspa From Xanthomonas Axon 7e-12
3gla_A100 Crystal Structure Of The Hspa From Xanthomonas Axon 8e-12
>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat Shock Protein Length = 151 Back     alignment and structure 
Iteration: 1

 Score =  160 bits (404), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 86/149 (57%), Positives = 103/149 (69%), Gaps = 11/149 (7%)
Query: 11  RRSSVFDPFSLDVWD---------FSSSSQFPQETSAFVNTRVDWKETPEAHVFKADLPG 61
           RRS+VFDPF+ D+W            + S    ET+AF N R+DWKETPEAHVFKADLPG
Sbjct: 5   RRSNVFDPFA-DLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPG 63
Query: 62  XXXXXXXXXXXDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKA 121
                      D  VL +SG+R  EKED+ND WHRVERSSG F RRFRL E+ +V+++KA
Sbjct: 64  VKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKA 123
Query: 122 SMENGVLTVTVPKAEEAKKSNVRAVQISG 150
            +ENGVLTVTVPKA E KK  V+A+QISG
Sbjct: 124 GLENGVLTVTVPKA-EVKKPEVKAIQISG 151
>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer Length = 101 Back     alignment and structure
>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational Flexibility In The Small Heat Shock Protein Hsp26 Length = 93 Back     alignment and structure
>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis Length = 103 Back     alignment and structure
>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis Length = 100 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query150
1gme_A151 Heat shock protein 16.9B; small heat shock protein 6e-66
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 1e-53
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 2e-48
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 5e-47
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 5e-21
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 7e-21
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 6e-20
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 9e-20
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 6e-19
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 5e-15
2bol_A 314 TSP36, small heat shock protein; A-crystallin, mol 7e-12
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Length = 151 Back     alignment and structure
 Score =  196 bits (500), Expect = 6e-66
 Identities = 97/158 (61%), Positives = 115/158 (72%), Gaps = 15/158 (9%)

Query: 1   MSMIPSFFGKRRSSVFDPFSLDVWD--------FSSSSQFPQETSAFVNTRVDWKETPEA 52
           MS++      RRS+VFDPF+    D          + S    ET+AF N R+DWKETPEA
Sbjct: 1   MSIV------RRSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEA 54

Query: 53  HVFKADLPGVKKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPE 112
           HVFKADLPGVKKEEVKVEVED  VL +SG+R  EKED+ND WHRVERSSG F RRFRL E
Sbjct: 55  HVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLE 114

Query: 113 NVEVDQIKASMENGVLTVTVPKAEEAKKSNVRAVQISG 150
           + +V+++KA +ENGVLTVTVPKAE  K   V+A+QISG
Sbjct: 115 DAKVEEVKAGLENGVLTVTVPKAEVKKP-EVKAIQISG 151
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Length = 100 Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Length = 123 Back     alignment and structure
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Length = 161 Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Length = 175 Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Length = 85 Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Length = 101 Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Length = 90 Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Length = 106 Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314 Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Length = 314 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query150
1gme_A151 Heat shock protein 16.9B; small heat shock protein 100.0
4eld_A161 MJ16.5-P1, small heat shock protein HSP16.5; chape 99.97
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 99.97
4fei_A102 Heat shock protein-related protein; stress respons 99.95
3aab_A123 Putative uncharacterized protein ST1653; alpha-cry 99.94
3l1e_A106 Alpha-crystallin A chain; lens transparency, polyd 99.93
2klr_A175 Alpha-crystallin B chain; protein, dimer, oligomer 99.92
2wj5_A101 Heat shock protein beta-6; chaperone, disulfide bo 99.92
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 99.91
2y1y_A90 Alpha-crystallin B chain,; small heat shock protei 99.89
2bol_A 314 TSP36, small heat shock protein; A-crystallin, mol 99.87
2bol_A314 TSP36, small heat shock protein; A-crystallin, mol 99.84
1rl1_A114 Suppressor of G2 allele of SKP1 homolog; beta sand 99.17
2xcm_C92 SGT1-like protein, cytosolic heat shock protein 90 99.15
2k8q_A134 Protein SHQ1; beta-sandwich, CS domain, nucleus, s 98.52
3eud_A115 Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A 98.49
3igf_A374 ALL4481 protein; two-domained protein consisting o 98.38
1x5m_A127 Calcyclin-binding protein; CS domain, structural g 98.18
1wh0_A134 Ubiquitin carboxyl-terminal hydrolase 19; USP, CS 98.11
1wgv_A124 KIAA1068 protein; CS domain, HSP20-like fold, stru 98.02
2o30_A131 Nuclear movement protein; MCSG, structural genomic 97.89
3qor_A121 Nuclear migration protein NUDC; beta-sandwich, cha 97.87
1ejf_A125 Progesterone receptor P23; chaperone, CO-chaperone 97.85
1wfi_A131 Nuclear distribution gene C homolog; NUDC, riken s 97.85
2rh0_A157 NUDC domain-containing protein 2; 13542905, nuclea 97.66
2kmw_A150 Uncharacterized protein AT3G03773; protein structu 97.63
2cg9_X134 CO-chaperone protein SBA1; chaperone complex, HSP9 97.52
3q9p_A85 Heat shock protein beta-1; alpha-crystallin domain 85.53
3gla_A100 Low molecular weight heat shock protein; HSPA, SHP 80.37
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A Back     alignment and structure
Probab=100.00  E-value=6.5e-35  Score=208.81  Aligned_cols=142  Identities=68%  Similarity=1.049  Sum_probs=119.9

Q ss_pred             CCCCCCccCCCCCCCCCCCCcccc-ccc--CC----C--CCCCCCcCcccceeEEEEcCCeEEEEEEcCCCCCCCeEEEE
Q 031937            1 MSMIPSFFGKRRSSVFDPFSLDVW-DFS--SS----S--QFPQETSAFVNTRVDWKETPEAHVFKADLPGVKKEEVKVEV   71 (150)
Q Consensus         1 m~~~p~~~~~~~~~~~d~~~~~~~-~~~--f~----~--~~~~~~~~~~~p~~dv~e~~~~~~l~~~lPG~~~edi~V~v   71 (150)
                      ||+++.      .+.|+||+ ++| +++  |.    .  ...+.....+.|++||+|++++|+|.++|||+++++|+|++
T Consensus         1 ms~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~di~e~~d~~~v~~dlPGv~kedI~V~v   73 (151)
T 1gme_A            1 MSIVRR------SNVFDPFA-DLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEV   73 (151)
T ss_dssp             -CCCCS------CCCBCTTC-GGGSSHHHHHHHHGGGTTSSCCSHHHHGGGCEEEEECSSEEEEEEECTTCCGGGEEEEE
T ss_pred             Cccccc------ccccCchH-hhhhchhhhhhhhcccccccccccccccCCceEEEEcCCEEEEEEECCCCChHHEEEEE
Confidence            787732      57899998 888 543  21    1  11234456788999999999999999999999999999999


Q ss_pred             eCCeEEEEEEEEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEEeCCEEEEEEeCcCcccCCCceEEecCC
Q 031937           72 EDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMENGVLTVTVPKAEEAKKSNVRAVQISG  150 (150)
Q Consensus        72 ~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~~~GvL~I~lpK~~~~~~~~~~~I~I~~  150 (150)
                      .+++.|+|+|++....+.++.+|+++|+.+|+|.|+|.||.+||.++|+|+|+||+|+|++||.+ +.++..++|+|+|
T Consensus        74 ~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~~nGvL~I~lPK~~-~~~~~~~~I~I~~  151 (151)
T 1gme_A           74 EDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAE-VKKPEVKAIQISG  151 (151)
T ss_dssp             ETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEEEEETTEEEEEEECCC-CCTTCCCCCCCCC
T ss_pred             ecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCCCccccceEEEEECCEEEEEEEccC-cCCCCCeEeeeCC
Confidence            65579999999987777778899999999999999999999999999999999999999999998 6666678999987
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A Back     alignment and structure
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Back     alignment and structure
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans} Back     alignment and structure
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A Back     alignment and structure
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A Back     alignment and structure
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A Back     alignment and structure
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Back     alignment and structure
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} Back     alignment and structure
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Back     alignment and structure
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP} Back     alignment and structure
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3 Back     alignment and structure
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Back     alignment and structure
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Back     alignment and structure
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A Back     alignment and structure
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Back     alignment and structure
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4 Back     alignment and structure
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus} Back     alignment and structure
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A Back     alignment and structure
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 150
d1gmea_150 b.15.1.1 (A:) Small heat shock protein {Wheat (Tri 5e-41
d1shsa_115 b.15.1.1 (A:) Small heat shock protein {Archaeon M 8e-26
d1rl1a_92 b.15.1.3 (A:) Suppressor of G2 allele of skp1 homo 0.001
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 150 Back     information, alignment and structure

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  132 bits (332), Expect = 5e-41
 Identities = 96/148 (64%), Positives = 112/148 (75%), Gaps = 9/148 (6%)

Query: 11  RRSSVFDPFSLDVWD--------FSSSSQFPQETSAFVNTRVDWKETPEAHVFKADLPGV 62
           RRS+VFDPF+    D          + S    ET+AF N R+DWKETPEAHVFKADLPGV
Sbjct: 4   RRSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGV 63

Query: 63  KKEEVKVEVEDDRVLQISGQRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKAS 122
           KKEEVKVEVED  VL +SG+R  EKED+ND WHRVERSSG F RRFRL E+ +V+++KA 
Sbjct: 64  KKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAG 123

Query: 123 MENGVLTVTVPKAEEAKKSNVRAVQISG 150
           +ENGVLTVTVPKAE  KK  V+A+QISG
Sbjct: 124 LENGVLTVTVPKAEV-KKPEVKAIQISG 150
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 115 Back     information, alignment and structure
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Length = 92 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query150
d1gmea_150 Small heat shock protein {Wheat (Triticum aestivum 100.0
d1shsa_115 Small heat shock protein {Archaeon Methanococcus j 99.94
d1rl1a_92 Suppressor of G2 allele of skp1 homolog, gst1 {Hum 98.56
d1ejfa_110 Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960 97.79
d1wh0a_134 Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H 97.49
d1wfia_131 Nuclear migration protein nudC {Mouse (Mus musculu 97.44
d1wgva_124 NudC domain containing protein 3, NUDCD3 (KIAA1068 97.11
d1vqoe179 Ribosomal protein L6 {Archaeon Haloarcula marismor 81.51
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=100.00  E-value=6.1e-34  Score=201.82  Aligned_cols=138  Identities=70%  Similarity=1.053  Sum_probs=117.8

Q ss_pred             CCCCCCCCCCcccccccCC---------CCCCCCCcCcccceeEEEEcCCeEEEEEEcCCCCCCCeEEEEeCCeEEEEEE
Q 031937           11 RRSSVFDPFSLDVWDFSSS---------SQFPQETSAFVNTRVDWKETPEAHVFKADLPGVKKEEVKVEVEDDRVLQISG   81 (150)
Q Consensus        11 ~~~~~~d~~~~~~~~~~f~---------~~~~~~~~~~~~p~~dv~e~~~~~~l~~~lPG~~~edi~V~v~~~~~L~I~g   81 (150)
                      |+.+.||||+. +|.+.|.         ..........+.|++||.|++++|+|+++|||++++||+|++++++.|+|+|
T Consensus         4 rr~~~fDpF~d-~~~d~f~~~~~~~~~~~~~~~~~~~~~~p~~dv~e~~~~~~i~~~lPG~~~edi~v~v~~~~~l~i~~   82 (150)
T d1gmea_           4 RRSNVFDPFAD-LWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSG   82 (150)
T ss_dssp             CSCCCBCTTCG-GGSSHHHHHHHHGGGTTSSCCSHHHHGGGCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEE
T ss_pred             ccCCCcCCchh-hhhchhhhhhhhhhccccccccccccCCCceeEEECCCEEEEEEEeCCCccCCEEEEEEEccceeEEE
Confidence            45778999973 4433221         1122344456679999999999999999999999999999998767899999


Q ss_pred             EEeeeccCCCceEEEEeeeeeeEEEEEECCCCcccCCeeEEEeCCEEEEEEeCcCcccCCCceEEecCC
Q 031937           82 QRKIEKEDRNDTWHRVERSSGAFSRRFRLPENVEVDQIKASMENGVLTVTVPKAEEAKKSNVRAVQISG  150 (150)
Q Consensus        82 ~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~vd~~~i~A~~~~GvL~I~lpK~~~~~~~~~~~I~I~~  150 (150)
                      ++......++..|+.+|+.+|.|+|+|.||.+||.++|+|+|+||+|+|++||.+ +++++.++|+|+|
T Consensus        83 ~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~~~nGvL~I~lpK~~-~~~~~~~~I~I~g  150 (150)
T d1gmea_          83 ERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAE-VKKPEVKAIQISG  150 (150)
T ss_dssp             CCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEEEEETTEEEEEEECCC-CCTTCCCCCCCCC
T ss_pred             EEecccccccceeeeeeeccceEEEEEECCCCeeeceeEEEEECCEEEEEEEcCC-cCCCCceEEeccC
Confidence            9888777788999999999999999999999999999999999999999999998 7777889999998
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure