Citrus Sinensis ID: 032019


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
MDPTQRQTPPSYSKESLIRRYKPIWRILLISNLALGGYMFAKARKKNSRVEDRKRPGPHDEDNQATDAVSSGLTPASPLSEEPSVPPTVIEPVKVREPIPEDQQRELFKWILEEKRKVKPKDPKEKKRIDEEKAILKQFIRAESIPQL
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHcHHHHHHHHHHHHHcccccc
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHccccccccccccccccccccccccccccccccccccccccccEccccccHHHHHHHHHHHHHHHHccccccHHHHHHcHHHHHHHHHHHHccccccc
mdptqrqtppsyskeslirryKPIWRILLISNLALGGYMFAKARkknsrvedrkrpgphdednqatdavssgltpasplseepsvpptviepvkvrepipedQQRELFKWILEEKrkvkpkdpkekkRIDEEKAILKQFIRAESIPQL
mdptqrqtppsyskeslirryKPIWRILLISNLALGGYMFAKarkknsrvedrkrpgphdednqatdavSSGLtpasplseepsvpptviepvkvrepipedqQRELFKWIleekrkvkpkdpkekkrideEKAILKqfiraesipql
MDPTQRQTPPSYSKESLIRRYKPIWRILLISNLALGGYMFAKARKKNSRVEDRKRPGPHDEDNQATDAVSSGLTPASPLSEEPSVPPTVIEPVKVREPIPEDQQRELFKWILeekrkvkpkdpkekkrideekAILKQFIRAESIPQL
****************LIRRYKPIWRILLISNLALGGYMFAK****************************************************************LFKWIL************************************
******************RRYKPIWRILLISNLALGGYMFAKARKKNS****************************************************EDQQRELFKWILEE*******************AILKQFIRAESIP**
***************SLIRRYKPIWRILLISNLALGGYMFAKA*******************************************PTVIEPVKVREPIPEDQQRELFKWILEEKR**********KRIDEEKAILKQFIRAESIPQL
*************KESLIRRYKPIWRILLISNLALGGYMFAKARK********************************************IEPVKVREPIPEDQQRELFKWILEEKRKVKPKDPKEKKRIDEEKAILKQFIRAES****
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDPTQRQTPPSYSKESLIRRYKPIWRILLISNLALGGYMFAKARKKNSRVEDRKRPGPHDEDNQATDAVSSGLTPASPLSEEPSVPPTVIEPVKVREPIPEDQQRELFKWILEEKRKVKPKDPKEKKRIDEEKAILKQFIRAESIPQL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query148
307136278178 hypothetical protein [Cucumis melo subsp 0.844 0.702 0.562 6e-32
449447851177 PREDICTED: uncharacterized protein LOC10 0.844 0.706 0.570 6e-32
255572965191 conserved hypothetical protein [Ricinus 0.871 0.675 0.548 1e-31
297743074198 unnamed protein product [Vitis vinifera] 0.885 0.661 0.525 8e-31
359482841181 PREDICTED: uncharacterized protein LOC10 0.885 0.723 0.533 1e-30
224128512189 predicted protein [Populus trichocarpa] 0.844 0.661 0.533 2e-29
297847868189 hypothetical protein ARALYDRAFT_474571 [ 0.824 0.645 0.525 2e-27
18405239188 uncharacterized protein [Arabidopsis tha 0.824 0.648 0.507 6e-27
186491049137 uncharacterized protein [Arabidopsis tha 0.824 0.890 0.528 9e-27
224091331142 predicted protein [Populus trichocarpa] 0.817 0.852 0.534 4e-26
>gi|307136278|gb|ADN34105.1| hypothetical protein [Cucumis melo subsp. melo] Back     alignment and taxonomy information
 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 76/135 (56%), Positives = 96/135 (71%), Gaps = 10/135 (7%)

Query: 14  KESLIRRYKPIWRILLISNLALGGYMFAKARKKNSRVEDRKRPGPHDEDNQATDAVSSGL 73
           KES  RRYK +W +LL  NLA+G Y+F + +K++  V          E+  A D+  +  
Sbjct: 54  KESFARRYKFLWPMLLTVNLAVGAYVFMRTKKQDEHVA---------EEEAAPDSAKTTK 104

Query: 74  TPASPLSEEPSVPPTVIEPVKVREPIPEDQQRELFKWILEEKRKVKPKDPKEKKRIDEEK 133
             A+P+ EE    P ++EPVKVREPIP DQQRELFKWILEEKRK+KPKD +EKKRIDEEK
Sbjct: 105 I-AAPVVEESLAKPAIVEPVKVREPIPVDQQRELFKWILEEKRKIKPKDREEKKRIDEEK 163

Query: 134 AILKQFIRAESIPQL 148
           AILK+FIRA+SIP +
Sbjct: 164 AILKEFIRAKSIPNI 178




Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447851|ref|XP_004141680.1| PREDICTED: uncharacterized protein LOC101218777 [Cucumis sativus] gi|449480582|ref|XP_004155936.1| PREDICTED: uncharacterized protein LOC101226804 [Cucumis sativus] Back     alignment and taxonomy information
>gi|255572965|ref|XP_002527413.1| conserved hypothetical protein [Ricinus communis] gi|223533223|gb|EEF34979.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|297743074|emb|CBI35941.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359482841|ref|XP_003632851.1| PREDICTED: uncharacterized protein LOC100853480 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224128512|ref|XP_002329022.1| predicted protein [Populus trichocarpa] gi|222839693|gb|EEE78016.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297847868|ref|XP_002891815.1| hypothetical protein ARALYDRAFT_474571 [Arabidopsis lyrata subsp. lyrata] gi|297337657|gb|EFH68074.1| hypothetical protein ARALYDRAFT_474571 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18405239|ref|NP_564677.1| uncharacterized protein [Arabidopsis thaliana] gi|12321579|gb|AAG50842.1|AC073944_9 unknown protein [Arabidopsis thaliana] gi|12323174|gb|AAG51570.1|AC027034_16 unknown protein; 99945-98618 [Arabidopsis thaliana] gi|13937163|gb|AAK50075.1|AF372935_1 At1g55160/T7N22.11 [Arabidopsis thaliana] gi|22137148|gb|AAM91419.1| At1g55160/T7N22.11 [Arabidopsis thaliana] gi|332195073|gb|AEE33194.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|186491049|ref|NP_001117496.1| uncharacterized protein [Arabidopsis thaliana] gi|332195074|gb|AEE33195.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224091331|ref|XP_002309225.1| predicted protein [Populus trichocarpa] gi|222855201|gb|EEE92748.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query148
TAIR|locus:2035731213 AT1G55160 "AT1G55160" [Arabido 0.918 0.638 0.380 8.8e-15
TAIR|locus:2050377202 AT2G19530 "AT2G19530" [Arabido 0.716 0.524 0.324 7.6e-09
TAIR|locus:2035731 AT1G55160 "AT1G55160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 59/155 (38%), Positives = 79/155 (50%)

Query:     9 PPSYSKESLIRRYKPIWRILLISNLALGGY-------------MFAKARK-KNSRVEDRK 54
             PP   KES  RRYK +W +LL  NLA+GG+             +F   R   +S +  R 
Sbjct:    59 PPPPPKESFARRYKYVWPLLLTVNLAVGGFCSSLDENRIVFSFIFMMLRVIYDSYLFFRT 118

Query:    55 RPGPHDEDNQATDAVSSGLTPASPLSEEPSVPPTVI-EPV--KVREPIPEDQQRELFKWI 111
             +    D   + T A SS +  A+P++ E ++  TV+ EPV  K REPIPE QQRELFKW+
Sbjct:   119 KKKDLDPVVEETAAKSSSV--AAPVTVEKTLSSTVVAEPVVIKAREPIPEKQQRELFKWM 176

Query:   112 LXXXXXXXXXXXXXXXXXXXXXAILKQFIRAESIP 146
             L                     AILKQFI +++IP
Sbjct:   177 LEEKRKVNPKNAEEKKRNDEEKAILKQFIGSKTIP 211




GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
GO:0005739 "mitochondrion" evidence=IDA
GO:0009536 "plastid" evidence=IDA
TAIR|locus:2050377 AT2G19530 "AT2G19530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00