Citrus Sinensis ID: 032024

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKTYDNVCHRKENTRKPLKPLMKRTRRKYS
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHcc
Coil and Loop (DISEMBL)
msieqpqpsqnLNQLMLQQssgnlsfsssnlskddeEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNkelkplghtcqkktydnvchrkentrkplkplmkrtrrkys
Flexible Loop (DISEMBL)
msieqpqpsqNLNQLMLQQSSGNLSFSSsnlskddeEMSRSALTtfrakeeeiekkklevrekvqahlgrveeetkrLATIREElealadpmrkeVAVVRKKIdsvnkelkplghtcqkktydnvchrkentrkplkplmkrtrrkys
Low Complexity Region (SEG)
MSIEqpqpsqnlnqlmlqqssgnlsfsssnlsKDDEEMSRSALTTFRAkeeeiekkklevrekVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKTYDNVCHRKENTRKPLKPLMKRTRRKYS
Disordered region (IsUnstruct)
***********************************************************************************************VAVVRKKI*********LGHTCQKKTYDNV***********************
Disordered Region (DISOPRED)
***********************************************************************EEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKTYDNVCHRKENTRKPLKPL*********
Disordered Region (DISEMBL)
*********QNLNQLMLQQS**********************LTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKTYDNVCHRKENTRKPLKPL*********
Disordered Region (DISPRO)
************NQLMLQ*************************TTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKTYDNVCHRKENTRKPLKPLMKRTRR***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSIEQPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKTYDNVCHRKENTRKPLKPLMKRTRRKYS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
351723393	164	uncharacterized protein LOC100499923 [Gl	0.75	0.676	0.830	4e-44
255637447	164	unknown [Glycine max]	0.75	0.676	0.821	1e-43
255595013	149	conserved hypothetical protein [Ricinus	0.702	0.697	0.847	3e-42
351724745	167	uncharacterized protein LOC100527015 [Gl	0.75	0.664	0.8	5e-42
388511961	166	unknown [Lotus japonicus]	0.770	0.686	0.775	1e-41
449440207	167	PREDICTED: uncharacterized protein LOC10	0.675	0.598	0.861	1e-40
79324461	192	uncharacterized protein [Arabidopsis tha	0.729	0.562	0.702	3e-37
297823455	191	hypothetical protein ARALYDRAFT_482617 [	0.709	0.549	0.722	4e-37
18404123	195	uncharacterized protein [Arabidopsis tha	0.709	0.538	0.722	5e-37
21592509	195	unknown [Arabidopsis thaliana]	0.709	0.538	0.722	5e-37

>gi|351723393|ref|NP_001238045.1| uncharacterized protein LOC100499923 [Glycine max] gi|255627713|gb|ACU14201.1| unknown [Glycine max]

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 93/112 (83%), Positives = 105/112 (93%), Gaps = 1/112 (0%)

Query: 9   SQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHL 68
           S+N N  ++ Q+SG+LSFSS +LSK+DEEMSRSAL+TFRAKEEEIE+KK+EVREKVQ  L
Sbjct: 3   SENQNNQLVVQNSGSLSFSS-HLSKEDEEMSRSALSTFRAKEEEIERKKMEVREKVQLQL 61

Query: 69  GRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKK 120
           GRVEEETKRLATIREELEALADPMRKEVA+VRK+IDSVNKELKPLGHTCQKK
Sbjct: 62  GRVEEETKRLATIREELEALADPMRKEVALVRKRIDSVNKELKPLGHTCQKK 113

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637447|gb|ACU19051.1| unknown [Glycine max]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 92/112 (82%), Positives = 105/112 (93%), Gaps = 1/112 (0%)

Query: 9   SQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHL 68
           S+N N  ++ Q+SG+LSFSS +LSK+DEE+SRSAL+TFRAKEEEIE+KK+EVREKVQ  L
Sbjct: 3   SENQNNQLVVQNSGSLSFSS-HLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQLQL 61

Query: 69  GRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKK 120
           GRVEEETKRLATIREELEALADPMRKEVA+VRK+IDSVNKELKPLGHTCQKK
Sbjct: 62  GRVEEETKRLATIREELEALADPMRKEVALVRKRIDSVNKELKPLGHTCQKK 113

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255595013|ref|XP_002536212.1| conserved hypothetical protein [Ricinus communis] gi|223520454|gb|EEF26171.1| conserved hypothetical protein [Ricinus communis]

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 89/105 (84%), Positives = 99/105 (94%), Gaps = 1/105 (0%)

Query: 16  MLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEET 75
           ++ Q+SG+LSFSS  +SK+DEEMSRSAL+TFRAKEEEIE+KKLEVREKVQA LGRVEEET
Sbjct: 12  LMVQTSGSLSFSS-QMSKEDEEMSRSALSTFRAKEEEIERKKLEVREKVQAQLGRVEEET 70

Query: 76  KRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKK 120
           KRLA IREELEALADPMRKEVA+VRKKID+VNKELKPLGHT QKK
Sbjct: 71  KRLAMIREELEALADPMRKEVALVRKKIDAVNKELKPLGHTVQKK 115

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724745|ref|NP_001237324.1| uncharacterized protein LOC100527015 [Glycine max] gi|255631368|gb|ACU16051.1| unknown [Glycine max]

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 92/115 (80%), Positives = 105/115 (91%), Gaps = 4/115 (3%)

Query: 9   SQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHL 68
           S+N N  ++ Q+SG+LSFSS +LSK+DEE+SRSAL+TFRAKEEEIE+KK+EVREKVQ  L
Sbjct: 3   SENQNNQLVVQNSGSLSFSS-HLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQLQL 61

Query: 69  GRVEEETKRLATIRE---ELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKK 120
           GRVEEETKRLATIRE   ELEALADPMRKEVA+VRK+IDSVNKELKPLGHTCQKK
Sbjct: 62  GRVEEETKRLATIREEYQELEALADPMRKEVALVRKRIDSVNKELKPLGHTCQKK 116

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511961|gb|AFK44042.1| unknown [Lotus japonicus]

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 90/116 (77%), Positives = 103/116 (88%), Gaps = 2/116 (1%)

Query: 5   QPQPSQNLNQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKV 64
           Q    Q  NQL++Q +SG+LSFSS  +SK+DEEMSRSAL+ F+AKEEEIE+KK+EVREKV
Sbjct: 2   QGGGEQQNNQLVVQ-NSGSLSFSS-QMSKEDEEMSRSALSNFKAKEEEIERKKMEVREKV 59

Query: 65  QAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKK 120
           Q  LGRVEEETKRLATIREELE+LADPMRKEV +VRK+IDSVNKELKPLGHTCQKK
Sbjct: 60  QLQLGRVEEETKRLATIREELESLADPMRKEVTIVRKRIDSVNKELKPLGHTCQKK 115

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440207|ref|XP_004137876.1| PREDICTED: uncharacterized protein LOC101210169 isoform 1 [Cucumis sativus] gi|449440209|ref|XP_004137877.1| PREDICTED: uncharacterized protein LOC101210169 isoform 2 [Cucumis sativus] gi|449516930|ref|XP_004165499.1| PREDICTED: uncharacterized protein LOC101227916 [Cucumis sativus]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 87/101 (86%), Positives = 97/101 (96%), Gaps = 1/101 (0%)

Query: 20  SSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLA 79
           ++G+LSFSS +LSK+DEE+SRSAL+TFRAKEEEIE+KK+EVREKVQA LGRVEEETKRLA
Sbjct: 17  NTGSLSFSS-HLSKEDEEISRSALSTFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLA 75

Query: 80  TIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKK 120
            IREELEALADPMRKEVA VRKKID+VNKELKPLGHTCQKK
Sbjct: 76  CIREELEALADPMRKEVAQVRKKIDAVNKELKPLGHTCQKK 116

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79324461|ref|NP_001031494.1| uncharacterized protein [Arabidopsis thaliana] gi|330254157|gb|AEC09251.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 78/111 (70%), Positives = 101/111 (90%), Gaps = 3/111 (2%)

Query: 13  NQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVE 72
           N+++L   +G+LSFSS ++S++DEEM+RSAL+ FRAKE+EIEK+++EVRE++QA LGRVE
Sbjct: 38  NEMVLH--TGSLSFSS-HMSREDEEMTRSALSAFRAKEDEIEKRRMEVRERIQAQLGRVE 94

Query: 73  EETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKKTYD 123
           +ETKRL+TIREELE++ADPMRKEV+VVRKKIDSVNKELKPLG T QKK  +
Sbjct: 95  QETKRLSTIREELESMADPMRKEVSVVRKKIDSVNKELKPLGSTVQKKVME 145

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823455|ref|XP_002879610.1| hypothetical protein ARALYDRAFT_482617 [Arabidopsis lyrata subsp. lyrata] gi|297325449|gb|EFH55869.1| hypothetical protein ARALYDRAFT_482617 [Arabidopsis lyrata subsp. lyrata]

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 78/108 (72%), Positives = 100/108 (92%), Gaps = 3/108 (2%)

Query: 13  NQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVE 72
           N+++L   +G+LSFSS ++S++DEEM+RSAL+ FRAKE+EIEK+++EVRE++QA LGRVE
Sbjct: 34  NEMVLH--TGSLSFSS-HMSREDEEMTRSALSAFRAKEDEIEKRRMEVRERIQAQLGRVE 90

Query: 73  EETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKK 120
           +ETKRL+TIREELE++ADPMRKEV+VVRKKIDSVNKELKPLG T QKK
Sbjct: 91  QETKRLSTIREELESMADPMRKEVSVVRKKIDSVNKELKPLGSTVQKK 138

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404123|ref|NP_565846.1| uncharacterized protein [Arabidopsis thaliana] gi|20197926|gb|AAD24625.2| expressed protein [Arabidopsis thaliana] gi|22135968|gb|AAM91566.1| unknown protein [Arabidopsis thaliana] gi|23198268|gb|AAN15661.1| unknown protein [Arabidopsis thaliana] gi|330254156|gb|AEC09250.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  159 bits (401), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 78/108 (72%), Positives = 100/108 (92%), Gaps = 3/108 (2%)

Query: 13  NQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVE 72
           N+++L   +G+LSFSS ++S++DEEM+RSAL+ FRAKE+EIEK+++EVRE++QA LGRVE
Sbjct: 38  NEMVLH--TGSLSFSS-HMSREDEEMTRSALSAFRAKEDEIEKRRMEVRERIQAQLGRVE 94

Query: 73  EETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKK 120
           +ETKRL+TIREELE++ADPMRKEV+VVRKKIDSVNKELKPLG T QKK
Sbjct: 95  QETKRLSTIREELESMADPMRKEVSVVRKKIDSVNKELKPLGSTVQKK 142

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592509|gb|AAM64459.1| unknown [Arabidopsis thaliana]

 Score =  159 bits (401), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 78/108 (72%), Positives = 100/108 (92%), Gaps = 3/108 (2%)

Query: 13  NQLMLQQSSGNLSFSSSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVE 72
           N+++L   +G+LSFSS ++S++DEEM+RSAL+ FRAKE+EIEK+++EVRE++QA LGRVE
Sbjct: 38  NEMVLH--TGSLSFSS-HMSREDEEMTRSALSAFRAKEDEIEKRRMEVRERIQAQLGRVE 94

Query: 73  EETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKK 120
           +ETKRL+TIREELE++ADPMRKEV+VVRKKIDSVNKELKPLG T QKK
Sbjct: 95  QETKRLSTIREELESMADPMRKEVSVVRKKIDSVNKELKPLGSTVQKK 142

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
TAIR|locus:2100083	178	AT3G09980 "AT3G09980" [Arabido	0.594	0.494	0.727	1.2e-26
TAIR|locus:2044883	195	AT2G36410 [Arabidopsis thalian	0.594	0.451	0.670	3.6e-25
TAIR|locus:2085231	180	AT3G52920 [Arabidopsis thalian	0.594	0.488	0.670	6.8e-24
TAIR|locus:2144618	173	AT5G03660 "AT5G03660" [Arabido	0.594	0.508	0.602	9e-22
TAIR|locus:2041985	174	AT2G27740 "AT2G27740" [Arabido	0.581	0.494	0.511	5.1e-19
TAIR|locus:2085206	164	AT3G52900 "AT3G52900" [Arabido	0.587	0.530	0.436	1.3e-13
TAIR|locus:1009023152	155	AT2G36355 "AT2G36355" [Arabido	0.385	0.367	0.526	5.8e-11

TAIR|locus:2100083 AT3G09980 "AT3G09980" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 64/88 (72%), Positives = 68/88 (77%)

Query:    33 KDDEEMSRSALTTFRAXXXXXXXXXXXXXXXVQAHLGRVEEETKRLATIREELEALADPM 92
             K+DEEMSR+AL+ FRA               VQA LGRVEEETKRLA IREELE LADPM
Sbjct:    40 KEDEEMSRTALSAFRAKEEEIEKKKMEIRERVQAQLGRVEEETKRLALIREELEGLADPM 99

Query:    93 RKEVAVVRKKIDSVNKELKPLGHTCQKK 120
             RKEVA+VRKKIDSVNKELKPLGHT QKK
Sbjct:   100 RKEVAMVRKKIDSVNKELKPLGHTVQKK 127

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2044883 AT2G36410 [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 59/88 (67%), Positives = 69/88 (78%)

Query:    33 KDDEEMSRSALTTFRAXXXXXXXXXXXXXXXVQAHLGRVEEETKRLATIREELEALADPM 92
             ++DEEM+RSAL+ FRA               +QA LGRVE+ETKRL+TIREELE++ADPM
Sbjct:    55 REDEEMTRSALSAFRAKEDEIEKRRMEVRERIQAQLGRVEQETKRLSTIREELESMADPM 114

Query:    93 RKEVAVVRKKIDSVNKELKPLGHTCQKK 120
             RKEV+VVRKKIDSVNKELKPLG T QKK
Sbjct:   115 RKEVSVVRKKIDSVNKELKPLGSTVQKK 142

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

TAIR|locus:2085231 AT3G52920 [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 59/88 (67%), Positives = 66/88 (75%)

Query:    33 KDDEEMSRSALTTFRAXXXXXXXXXXXXXXXVQAHLGRVEEETKRLATIREELEALADPM 92
             K+DEEM+RSAL+ FRA               V+A LGRVEEET+RLA+IREELE +ADPM
Sbjct:    26 KEDEEMARSALSAFRAKEDEIEKRKMEVRERVKAQLGRVEEETRRLASIREELETMADPM 85

Query:    93 RKEVAVVRKKIDSVNKELKPLGHTCQKK 120
             RKEV  VRKKIDSVNKELKPLG T QKK
Sbjct:    86 RKEVNWVRKKIDSVNKELKPLGSTVQKK 113

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2144618 AT5G03660 "AT5G03660" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 53/88 (60%), Positives = 64/88 (72%)

Query:    33 KDDEEMSRSALTTFRAXXXXXXXXXXXXXXXVQAHLGRVEEETKRLATIREELEALADPM 92
             K+D+E+S  AL+ F+A               VQA LGRVE+E+KRLA IREELE  ADPM
Sbjct:    34 KEDDELSMKALSAFKAKEEEIEKKKMEIRERVQAQLGRVEDESKRLAMIREELEGFADPM 93

Query:    93 RKEVAVVRKKIDSVNKELKPLGHTCQKK 120
             RKEV +VRKKIDS++KELKPLG+T QKK
Sbjct:    94 RKEVTMVRKKIDSLDKELKPLGNTVQKK 121

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2041985 AT2G27740 "AT2G27740" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 44/86 (51%), Positives = 59/86 (68%)

Query:    35 DEEMSRSALTTFRAXXXXXXXXXXXXXXXVQAHLGRVEEETKRLATIREELEALADPMRK 94
             +EE+S+SA   F+A               VQ  LG  EE T+RLA IREELEAL DPMRK
Sbjct:    37 EEELSQSAFALFKAKEDEIERRKMEVKDRVQKKLGLAEEATRRLAEIREELEALTDPMRK 96

Query:    95 EVAVVRKKIDSVNKELKPLGHTCQKK 120
             E++ +RK++D++N+ELKPLG +CQ+K
Sbjct:    97 EISAIRKRVDAINRELKPLGQSCQRK 122

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2085206 AT3G52900 "AT3G52900" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 38/87 (43%), Positives = 51/87 (58%)

Query:    34 DDEEMSRSALTTFRAXXXXXXXXXXXXXXXVQAHLGRVEEETKRLATIREELEALADPMR 93
             ++EE+ + A+T F+A               VQ  LG  EE T+ L    EELE + DPMR
Sbjct:    27 EEEEIWKVAVTRFQAREEEIERKKMTVKEKVQQRLGFAEEATRCLTQTLEELEIMGDPMR 86

Query:    94 KEVAVVRKKIDSVNKELKPLGHTCQKK 120
             KEV +VRKKID  N+++K L  +CQKK
Sbjct:    87 KEVGMVRKKIDMANRDIKSLAQSCQKK 113

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:1009023152 AT2G36355 "AT2G36355" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 30/57 (52%), Positives = 38/57 (66%)

Query:    64 VQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKK 120
             +Q  LG  EE T+ L    E LE + DPMRKEV +VRKKI+  N+E+K L  +CQKK
Sbjct:    48 IQQRLGFAEEATRSLTQTLEGLEIMGDPMRKEVGMVRKKIEMANREIKSLSQSCQKK 104


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.128   0.348    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      148       105   0.00091  102 3  11 23  0.44    30
                                                     29  0.39    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  488 (52 KB)
  Total size of DFA:  95 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.44u 0.10s 15.54t   Elapsed:  00:00:00
  Total cpu time:  15.44u 0.10s 15.54t   Elapsed:  00:00:00
  Start:  Mon May 20 15:29:10 2013   End:  Mon May 20 15:29:10 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	148
pfam04949	160	pfam04949, Transcrip_act, Transcriptional activato	1e-39
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	5e-04

>gnl|CDD|191136 pfam04949, Transcrip_act, Transcriptional activator

 Score =  130 bits (329), Expect = 1e-39
 Identities = 74/108 (68%), Positives = 93/108 (86%), Gaps = 1/108 (0%)

Query: 14  QLMLQQSSGNLSFS-SSNLSKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVE 72
           Q +  + SG++SF  S  + + DEE+SRSAL+ F+AKEEEIE++K+EVRE+VQA LGRVE
Sbjct: 3   QRLRVKHSGSISFGGSPMMDEKDEELSRSALSLFKAKEEEIERRKMEVRERVQAQLGRVE 62

Query: 73  EETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLGHTCQKK 120
           EETKRLA IREELE +ADPMRKEV+++RK+IDSVN+ELKPLG TCQKK
Sbjct: 63  EETKRLAEIREELEGMADPMRKEVSMIRKRIDSVNRELKPLGQTCQKK 110

This family of proteins may act as a transcriptional activator. It plays a role in stress response in plants. Length = 160

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 20/68 (29%), Positives = 29/68 (42%)

Query: 47  RAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSV 106
           RA+    E    E  E         EE + RL T+ E + A+ D +R  +A  R  + S 
Sbjct: 881 RARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASG 940

Query: 107 NKELKPLG 114
            +EL  L 
Sbjct: 941 GRELPRLA 948

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	148
PF04949	159	Transcrip_act: Transcriptional activator; InterPro	100.0
TIGR01837	118	PHA_granule_1 poly(hydroxyalkanoate) granule-assoc	95.19
PF05597	132	Phasin: Poly(hydroxyalcanoate) granule associated	94.83
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	87.73
PF07956	142	DUF1690: Protein of Unknown function (DUF1690) ; I	83.2

>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []

Probab=100.00  E-value=2.2e-53  Score=335.34  Aligned_cols=109  Identities=72%  Similarity=1.024  Sum_probs=105.5

Q ss_pred             hhccCccccccCCCC-CchhHHhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHH
Q 032024           17 LQQSSGNLSFSSSNL-SKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKE   95 (148)
Q Consensus        17 ~~~~sg~~s~~~s~~-~~~eEe~srsAlS~FrAKEEEIERkKmEVReKVqaqLGRvEEETkRLA~IrEELE~laDPmRKE   95 (148)
                      +++++|+++++|+++ ++++++|||||||+|+|||+|||+||||||+|||+|||||||+|||||+||+|||+|+||||||
T Consensus         6 ~~~~~~~~~~~g~~~~~~~~e~~s~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkE   85 (159)
T PF04949_consen    6 RVKNSGSISFNGSSMMDDEDEEMSRSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKE   85 (159)
T ss_pred             hcccCCCCCCCCCcccchhHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHH
Confidence            478999999988777 7889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhcccccchhhhhhhccccc
Q 032024           96 VAVVRKKIDSVNKELKPLGHTCQKKTYDNV  125 (148)
Q Consensus        96 Va~VRKkID~vNreLKPLgqtCqKKEkEY~  125 (148)
                      |++||||||+|||+|||||++|||||+||.
T Consensus        86 v~~vRkkID~vNreLkpl~~~cqKKEkEyk  115 (159)
T PF04949_consen   86 VEMVRKKIDSVNRELKPLGQSCQKKEKEYK  115 (159)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999996

This entry represents proteins annotated as RAB6-interacting golgins.

>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein

Probab=95.19  E-value=0.067  Score=39.65  Aligned_cols=62  Identities=23%  Similarity=0.417  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhcccccch
Q 032024           51 EEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLG  114 (148)
Q Consensus        51 EEIERkKmEVReKVqaqLGRvEEETkRLA~IrEELE~laDPmRKEVa~VRKkID~vNreLKPLg  114 (148)
                      ++++..--+|+++.+.+.+.+|.-...  .+..=|..|+-|++.||..++.|||.+...|..|.
T Consensus        55 e~~~~~~~~~~~~~~~~~~~le~~~~~--~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~  116 (118)
T TIGR01837        55 EEVKTALEQTRDQVQRNWDKLEKAFDE--RVEQALNRLNIPSREEIEALSAKIEQLAVQVEELR  116 (118)
T ss_pred             HHHhhhHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            455555556777777777777765553  56778999999999999999999999999887664

This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.

>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material

Probab=94.83  E-value=0.12  Score=39.70  Aligned_cols=62  Identities=19%  Similarity=0.445  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhcccccch
Q 032024           51 EEIEKKKLEVREKVQAHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLG  114 (148)
Q Consensus        51 EEIERkKmEVReKVqaqLGRvEEETkRLA~IrEELE~laDPmRKEVa~VRKkID~vNreLKPLg  114 (148)
                      ++++..--.|++++..+++++|.--..  .+..-|..|+=|.++||..+..|||.++++|.-|.
T Consensus        68 ~~~~~~~~~~~~~~~~~~dklE~~fd~--rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~  129 (132)
T PF05597_consen   68 DQVKSRVDDVKERATGQWDKLEQAFDE--RVARALNRLGVPSRKDVEALSARIDQLTAQVERLA  129 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            344455566777777777777764321  13445888999999999999999999999886553

PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=87.73  E-value=1.5  Score=31.89  Aligned_cols=47  Identities=30%  Similarity=0.495  Sum_probs=31.7

Q ss_pred             HHhhhhHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHhhhhcccccch
Q 032024           66 AHLGRVEEETKRLATIREELEALADPMRKEVAVVRKKIDSVNKELKPLG  114 (148)
Q Consensus        66 aqLGRvEEETkRLA~IrEELE~laDPmRKEVa~VRKkID~vNreLKPLg  114 (148)
                      +--.++..-.+||+.+-.+|+.|  |++.+|..++..|..+|-+++-|+
T Consensus        39 ~l~~~~~~~~~Rl~~lE~~l~~L--Pt~~dv~~L~l~l~el~G~~~~l~   85 (106)
T PF10805_consen   39 KLEERLDEHDRRLQALETKLEHL--PTRDDVHDLQLELAELRGELKELS   85 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHhHHHHHH
Confidence            33344555678999999999988  777777766666665555554443

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins

Probab=83.20  E-value=3.7  Score=31.75  Aligned_cols=77  Identities=32%  Similarity=0.509  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHhhhhHHHHhhHHHHHHHHHh--cc----c--------hhHHHHHHHHHHHhhhhcccccch-----hhhh
Q 032024           58 LEVREKVQAHLGRVEEETKRLATIREELEA--LA----D--------PMRKEVAVVRKKIDSVNKELKPLG-----HTCQ  118 (148)
Q Consensus        58 mEVReKVqaqLGRvEEETkRLA~IrEELE~--la----D--------PmRKEVa~VRKkID~vNreLKPLg-----qtCq  118 (148)
                      .-|.+||.+.|-++++++.  +.+.+-|+.  ++    |        ..-++|+.+|+|++.. +.|+++.     ..|.
T Consensus        34 ~~iq~Rva~eL~~L~~~~~--~~~~~~l~~~~~~ed~~~~~~~lSs~~v~~~i~~L~~kLe~~-~kl~~~~~~~~~~~v~  110 (142)
T PF07956_consen   34 LHIQERVAEELKRLEEEEL--KKFEEALEKSLLSEDEKDQDPGLSSKSVNEEIEKLREKLEER-KKLRELKEEKNSEEVE  110 (142)
T ss_pred             HHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHHHH-HHHHhccccccchhhH
Confidence            3577899999999998873  333333322  22    1        2456788888888843 2222222     2455


Q ss_pred             hhccccccccCCCCCCCch
Q 032024          119 KKTYDNVCHRKENTRKPLK  137 (148)
Q Consensus       119 KKEkEY~~~~~~~~~~~~~  137 (148)
                      .-..+.+=--+.|.++||.
T Consensus       111 ~aR~~vv~CL~~N~~rPLn  129 (142)
T PF07956_consen  111 KARSAVVRCLRENDGRPLN  129 (142)
T ss_pred             HHHHHHHHHHHHCCCCCCc
Confidence            5444444334568888885

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	148
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 37.9 bits (87), Expect = 6e-04
 Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 45/160 (28%)

Query: 32  SKDDEEMSRSALTTFRAKEEEIEKKKLEVREKVQAHLG----RVEEETKRLATIREELEA 87
           SKD    +     T  +K+EE+ +K +E  E ++ +       ++ E ++ + +      
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQKFVE--EVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 88  LADPMRKEVAVVRK----------KIDSVNKELKP-----------LGHTC--------- 117
             D +  +  V  K          K+     EL+P            G T          
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 118 --QKKTYDNV-------CHRKENTRKPLKPLMKRTRRKYS 148
             Q K    +       C+  E   + L+ L+ +    ++
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00