Citrus Sinensis ID: 032047

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE
ccEEEEEEccccccccHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHccccccHHHHHHHHHcccEEEEEEEcccHHHHHHHHHccccccccccccccccccccccccEEEccccHHHHHHHHHHHcccccccccccccccccc
EcEEEEEEcHHHHHcccHHHHHHHHHHHccEEEEEEEEcccHHHHHHHcHHHcccccHHHHHHHHccccEEEEEEEcccHHHHHHHHHccccHHHcccccHHHHHccEccEccEEEcccHHHHHHHHHHHccHHHccccccccccccc
MEQTFIMikpdgvqrglVGEIIIRFEKkgfslkglklmtvdrpfaekhyedlsskpffgSLIEYITSGPVVAMIWEGEGVVKTGRtiigatnpaqsapgtirgdlaivtgrniihgsdsVESAQKEIALwfpdgpinwqsslhpwiye
meqtfimikpdgvqrglVGEIIIRfekkgfslkglkLMTVDRPFAEKHyedlsskpfFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGatnpaqsapgtiRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE
MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE
****FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIY*
MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE
MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE
MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPW*Y*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query148 2.2.26 [Sep-21-2011]
P39207149 Nucleoside diphosphate ki no no 1.0 0.993 0.810 9e-69
P47920148 Nucleoside diphosphate ki N/A no 1.0 1.0 0.817 2e-67
Q56E62148 Nucleoside diphosphate ki N/A no 1.0 1.0 0.817 6e-67
O81372148 Nucleoside diphosphate ki N/A no 1.0 1.0 0.810 6e-67
P47919148 Nucleoside diphosphate ki N/A no 1.0 1.0 0.817 9e-67
Q9M7P6148 Nucleoside diphosphate ki N/A no 1.0 1.0 0.810 1e-66
Q02254148 Nucleoside diphosphate ki N/A no 1.0 1.0 0.797 2e-66
Q39839149 Nucleoside diphosphate ki yes no 0.993 0.986 0.816 2e-66
Q96559148 Nucleoside diphosphate ki N/A no 1.0 1.0 0.804 3e-66
P47922149 Nucleoside diphosphate ki N/A no 0.993 0.986 0.795 4e-65
>sp|P39207|NDK1_ARATH Nucleoside diphosphate kinase 1 OS=Arabidopsis thaliana GN=NDPK1 PE=1 SV=1 Back     alignment and function desciption
 Score =  258 bits (659), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 120/148 (81%), Positives = 134/148 (90%)

Query: 1   MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
           MEQTFIMIKPDGVQRGL+GE+I RFEKKGF+LKGLKL++V+R FAEKHYEDLSSK FF  
Sbjct: 1   MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSG 60

Query: 61  LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
           L++YI SGPVVAMIWEG+ VV TGR IIGATNPA S PGTIRGD AI  GRN+IHGSDSV
Sbjct: 61  LVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSV 120

Query: 121 ESAQKEIALWFPDGPINWQSSLHPWIYE 148
           ESA+KEIALWFPDGP+NWQSS+HPW+YE
Sbjct: 121 ESARKEIALWFPDGPVNWQSSVHPWVYE 148
Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 6
>sp|P47920|NDKB_FLABI Nucleoside diphosphate kinase B OS=Flaveria bidentis PE=2 SV=1 Back     alignment and function description
>sp|Q56E62|NDK1_TOBAC Nucleoside diphosphate kinase 1 OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|O81372|NDK1_MESCR Nucleoside diphosphate kinase 1 OS=Mesembryanthemum crystallinum GN=NDKP1 PE=2 SV=1 Back     alignment and function description
>sp|P47919|NDKA_FLABI Nucleoside diphosphate kinase A OS=Flaveria bidentis PE=2 SV=1 Back     alignment and function description
>sp|Q9M7P6|NDK_CAPAN Nucleoside diphosphate kinase OS=Capsicum annuum PE=2 SV=1 Back     alignment and function description
>sp|Q02254|NDK1_SPIOL Nucleoside diphosphate kinase 1 OS=Spinacia oleracea GN=NDPK1 PE=2 SV=1 Back     alignment and function description
>sp|Q39839|NDK1_SOYBN Nucleoside diphosphate kinase 1 OS=Glycine max PE=2 SV=1 Back     alignment and function description
>sp|Q96559|NDK_HELAN Nucleoside diphosphate kinase OS=Helianthus annuus PE=2 SV=1 Back     alignment and function description
>sp|P47922|NDK1_PEA Nucleoside diphosphate kinase 1 OS=Pisum sativum GN=NDPK1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query148
19570344148 nucleoside diphosphate kinase 1 [Brassic 1.0 1.0 0.844 2e-68
18413214169 nucleoside diphosphate kinase 1 [Arabido 1.0 0.875 0.810 2e-67
297809115148 nucleoside diphosphate kinase 1 [Arabido 1.0 1.0 0.817 3e-67
730129149 RecName: Full=Nucleoside diphosphate kin 1.0 0.993 0.810 6e-67
284433792148 nucleoside diphosphate kinase B [Jatroph 1.0 1.0 0.824 1e-66
302773528151 hypothetical protein SELMODRAFT_171292 [ 1.0 0.980 0.790 2e-66
255571035148 nucleoside diphosphate kinase, putative 1.0 1.0 0.824 2e-66
302793166148 hypothetical protein SELMODRAFT_109077 [ 1.0 1.0 0.790 3e-66
118487555148 unknown [Populus trichocarpa] 1.0 1.0 0.824 3e-66
312985291148 nucleoside diphosphate kinase 1 [Hevea b 1.0 1.0 0.824 4e-66
>gi|19570344|dbj|BAB86292.1| nucleoside diphosphate kinase 1 [Brassica rapa] gi|19744165|dbj|BAB86841.1| NDPK I [Brassica rapa] Back     alignment and taxonomy information
 Score =  263 bits (673), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 125/148 (84%), Positives = 134/148 (90%)

Query: 1   MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
           MEQTFIMIKPDGVQRGLVGEII RFEKKGF+LKGLKL+TVDRPFAEKHY+DLS+KPFF S
Sbjct: 1   MEQTFIMIKPDGVQRGLVGEIICRFEKKGFTLKGLKLITVDRPFAEKHYQDLSAKPFFSS 60

Query: 61  LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
           L++YI SGPVVAMIWEG+ VV TGR IIGATNPA S PGTIRGD AI  GRN+IHGSDSV
Sbjct: 61  LVDYIISGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDYAIDIGRNVIHGSDSV 120

Query: 121 ESAQKEIALWFPDGPINWQSSLHPWIYE 148
           ESA KE ALWFPDGP+NWQSSLH WIYE
Sbjct: 121 ESANKEAALWFPDGPVNWQSSLHSWIYE 148

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|18413214|ref|NP_567346.1| nucleoside diphosphate kinase 1 [Arabidopsis thaliana] gi|332657342|gb|AEE82742.1| nucleoside diphosphate kinase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297809115|ref|XP_002872441.1| nucleoside diphosphate kinase 1 [Arabidopsis lyrata subsp. lyrata] gi|297318278|gb|EFH48700.1| nucleoside diphosphate kinase 1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|730129|sp|P39207.1|NDK1_ARATH RecName: Full=Nucleoside diphosphate kinase 1; AltName: Full=Nucleoside diphosphate kinase I; Short=NDK I; Short=NDP kinase I; Short=NDPK I gi|56966225|pdb|1U8W|A Chain A, Crystal Structure Of Arabidopsis Thaliana Nucleoside Diphosphate Kinase 1 gi|56966226|pdb|1U8W|B Chain B, Crystal Structure Of Arabidopsis Thaliana Nucleoside Diphosphate Kinase 1 gi|56966227|pdb|1U8W|C Chain C, Crystal Structure Of Arabidopsis Thaliana Nucleoside Diphosphate Kinase 1 gi|56966228|pdb|1U8W|D Chain D, Crystal Structure Of Arabidopsis Thaliana Nucleoside Diphosphate Kinase 1 gi|56966229|pdb|1U8W|E Chain E, Crystal Structure Of Arabidopsis Thaliana Nucleoside Diphosphate Kinase 1 gi|56966230|pdb|1U8W|F Chain F, Crystal Structure Of Arabidopsis Thaliana Nucleoside Diphosphate Kinase 1 gi|3169310|gb|AAC17844.1| nucleoside diphosphate kinase type 1 [Arabidopsis thaliana] gi|5881777|emb|CAB55695.1| nucleoside-diphosphate kinase [Arabidopsis thaliana] gi|7267574|emb|CAB78055.1| nucleoside-diphosphate kinase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|284433792|gb|ADB85102.1| nucleoside diphosphate kinase B [Jatropha curcas] Back     alignment and taxonomy information
>gi|302773528|ref|XP_002970181.1| hypothetical protein SELMODRAFT_171292 [Selaginella moellendorffii] gi|300161697|gb|EFJ28311.1| hypothetical protein SELMODRAFT_171292 [Selaginella moellendorffii] Back     alignment and taxonomy information
>gi|255571035|ref|XP_002526468.1| nucleoside diphosphate kinase, putative [Ricinus communis] gi|223534143|gb|EEF35859.1| nucleoside diphosphate kinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|302793166|ref|XP_002978348.1| hypothetical protein SELMODRAFT_109077 [Selaginella moellendorffii] gi|300153697|gb|EFJ20334.1| hypothetical protein SELMODRAFT_109077 [Selaginella moellendorffii] Back     alignment and taxonomy information
>gi|118487555|gb|ABK95604.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|312985291|gb|ADR30796.1| nucleoside diphosphate kinase 1 [Hevea brasiliensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query148
TAIR|locus:2161922231 NDPK2 "nucleoside diphosphate 1.0 0.640 0.624 2.9e-48
ASPGD|ASPL0000017184153 swoH [Emericella nidulans (tax 0.993 0.960 0.648 6e-48
TAIR|locus:2138101237 AT4G23900 [Arabidopsis thalian 0.993 0.620 0.608 6e-48
FB|FBgn0000150153 awd "abnormal wing discs" [Dro 0.993 0.960 0.635 9.8e-48
UNIPROTKB|Q6XI71150 awd "Nucleoside diphosphate ki 0.993 0.98 0.635 9.8e-48
UNIPROTKB|P52174152 NME1-1 "Nucleoside diphosphate 0.993 0.967 0.635 1.2e-47
UNIPROTKB|P15531152 NME1 "Nucleoside diphosphate k 0.993 0.967 0.641 1.6e-47
RGD|619877152 Nme2 "NME/NM23 nucleoside diph 1.0 0.973 0.624 1.6e-47
UNIPROTKB|P52175152 NME1-2 "Nucleoside diphosphate 0.993 0.967 0.635 2e-47
MGI|MGI:97356152 Nme2 "NME/NM23 nucleoside diph 1.0 0.973 0.624 2.6e-47
TAIR|locus:2161922 NDPK2 "nucleoside diphosphate kinase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 93/149 (62%), Positives = 117/149 (78%)

Query:     1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
             +E+T+IM+KPDG+QRGLVGEII RFEKKGF L GLK+    +  AE+HY+DLS+K FF +
Sbjct:    83 VEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPN 142

Query:    61 LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
             LIEYITSGPVV M WEG GVV + R +IG T+P Q+ PGTIRGDLA+ TGRNI+HGSDS 
Sbjct:   143 LIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSP 202

Query:   121 ESAQKEIALWFPDGPI-NWQSSLHPWIYE 148
             E+ ++EI LWF +G +  W S+L  W+ E
Sbjct:   203 ENGKREIGLWFKEGELCKWDSALATWLRE 231
GO:0004550 "nucleoside diphosphate kinase activity" evidence=IEA;ISS;IDA;TAS
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0006165 "nucleoside diphosphate phosphorylation" evidence=IEA
GO:0006183 "GTP biosynthetic process" evidence=IEA
GO:0006228 "UTP biosynthetic process" evidence=IEA
GO:0006241 "CTP biosynthetic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0005634 "nucleus" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0009585 "red, far-red light phototransduction" evidence=IMP
GO:0042542 "response to hydrogen peroxide" evidence=IEP;IMP
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009411 "response to UV" evidence=TAS
GO:0009734 "auxin mediated signaling pathway" evidence=IMP
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
ASPGD|ASPL0000017184 swoH [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TAIR|locus:2138101 AT4G23900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0000150 awd "abnormal wing discs" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q6XI71 awd "Nucleoside diphosphate kinase" [Drosophila yakuba (taxid:7245)] Back     alignment and assigned GO terms
UNIPROTKB|P52174 NME1-1 "Nucleoside diphosphate kinase A 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P15531 NME1 "Nucleoside diphosphate kinase A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|619877 Nme2 "NME/NM23 nucleoside diphosphate kinase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P52175 NME1-2 "Nucleoside diphosphate kinase A 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:97356 Nme2 "NME/NM23 nucleoside diphosphate kinase 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3M7K5NDK_ANAVT2, ., 7, ., 4, ., 60.63081.00.9932yesno
P47919NDKA_FLABI2, ., 7, ., 4, ., 60.81751.01.0N/Ano
P74494NDK_SYNY32, ., 7, ., 4, ., 60.61741.00.9932N/Ano
Q96559NDK_HELAN2, ., 7, ., 4, ., 60.80401.01.0N/Ano
Q8YRP2NDK_NOSS12, ., 7, ., 4, ., 60.63081.00.9932yesno
Q90380NDK_COLLI2, ., 7, ., 4, ., 60.63081.00.9673N/Ano
P15531NDKA_HUMAN2, ., 7, ., 4, ., 60.63751.00.9736yesno
P93554NDK1_SACOF2, ., 7, ., 4, ., 60.76351.00.9932N/Ano
Q39839NDK1_SOYBN2, ., 7, ., 4, ., 60.81630.99320.9865yesno
P81766NDK3_SPIOL2, ., 7, ., 4, ., 60.62160.99320.9607N/Ano
Q05982NDKA_RAT2, ., 7, ., 4, ., 60.63510.99320.9671yesno
Q50KA9NDKA_CANFA2, ., 7, ., 4, ., 60.62160.99320.9671yesno
P39207NDK1_ARATH2, ., 7, ., 4, ., 60.81081.00.9932nono
B1WQB7NDK_CYAA52, ., 7, ., 4, ., 60.61071.00.9932yesno
Q116S1NDK_TRIEI2, ., 7, ., 4, ., 60.63751.00.9932yesno
Q8TFN0NDK_EMENI2, ., 7, ., 4, ., 60.64860.99320.9607yesno
Q01768NDKB_MOUSE2, ., 7, ., 1, 3, ., 30.62411.00.9736yesno
O81372NDK1_MESCR2, ., 7, ., 4, ., 60.81081.01.0N/Ano
Q07661NDK1_ORYSJ2, ., 7, ., 4, ., 60.70271.00.9932nono
Q5RC56NDKA_PONAB2, ., 7, ., 4, ., 60.63751.00.9736yesno
Q7Z8P9NDK_ASPFU2, ., 7, ., 4, ., 60.64180.99320.9607yesno
Q02254NDK1_SPIOL2, ., 7, ., 4, ., 60.79721.01.0N/Ano
P47920NDKB_FLABI2, ., 7, ., 4, ., 60.81751.01.0N/Ano
P47921NDK_SOLLC2, ., 7, ., 4, ., 60.80550.97291.0N/Ano
P47922NDK1_PEA2, ., 7, ., 4, ., 60.79590.99320.9865N/Ano
B0C4I0NDK_ACAM12, ., 7, ., 4, ., 60.64421.00.9932yesno
Q56E62NDK1_TOBAC2, ., 7, ., 4, ., 60.81751.01.0N/Ano
Q6XI71NDKA_DROYA2, ., 7, ., 4, ., 60.63510.99320.98N/Ano
P52175NDKA2_BOVIN2, ., 7, ., 4, ., 60.63510.99320.9671yesno
P52174NDKA1_BOVIN2, ., 7, ., 4, ., 60.63510.99320.9671yesno
Q9M7P6NDK_CAPAN2, ., 7, ., 4, ., 60.81081.01.0N/Ano
B2IX22NDK_NOSP72, ., 7, ., 4, ., 60.64421.00.9932yesno
Q9UUY8NDK_NEUCR2, ., 7, ., 4, ., 60.62830.99320.9671N/Ano
O57535NDK_CHICK2, ., 7, ., 4, ., 60.62411.00.9673yesno
A6N0M9NDK1_ORYSI2, ., 7, ., 4, ., 60.70271.00.9932N/Ano
P70011NDKA2_XENLA2, ., 7, ., 4, ., 60.60130.99320.9545N/Ano
B8HUM7NDK_CYAP42, ., 7, ., 4, ., 60.64421.00.9932yesno
B0JHT4NDK_MICAN2, ., 7, ., 4, ., 60.59731.00.9932yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.40.998
4th Layer2.7.4.60.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
NDPK1
NDPK1; ATP binding / nucleoside diphosphate kinase; nucleoside diphosphate kinase type 1 (NDPK1) gene, complete ; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate (169 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT3G18680
aspartate/glutamate/uridylate kinase family protein; aspartate/glutamate/uridylate kinase famil [...] (339 aa)
   • •• 0.979
RNR1
RNR1 (RIBONUCLEOTIDE REDUCTASE 1); ATP binding / protein binding / ribonucleoside-diphosphate r [...] (816 aa)
•  • •• 0.976
AT3G46940
deoxyuridine 5'-triphosphate nucleotidohydrolase family; deoxyuridine 5'-triphosphate nucleotid [...] (166 aa)
   • •• 0.970
ZEU1
ZEU1 (ZEUS1); ATP binding / thymidylate kinase; Encodes thymidylate kinase which exists in two [...] (271 aa)
   • •• 0.966
AT5G66005
Expressed protein; Expressed protein; FUNCTIONS IN- nucleoside-triphosphatase activity, transfe [...] (192 aa)
     •• 0.963
AT5G50370
adenylate kinase, putative; adenylate kinase, putative; FUNCTIONS IN- nucleobase, nucleoside, n [...] (248 aa)
     •• 0.948
AT3G06200
guanylate kinase, putative; guanylate kinase, putative; FUNCTIONS IN- guanylate kinase activity [...] (282 aa)
     •• 0.944
AT4G02120
CTP synthase, putative / UTP--ammonia ligase, putative; CTP synthase, putative / UTP--ammonia l [...] (556 aa)
     •• 0.943
AT4G13720
inosine triphosphate pyrophosphatase, putative / HAM1 family protein; inosine triphosphate pyro [...] (206 aa)
   •••• 0.943
emb2742
emb2742 (embryo defective 2742); CTP synthase/ catalytic; embryo defective 2742 (emb2742); FUNC [...] (591 aa)
     •• 0.940

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query148
cd04413130 cd04413, NDPk_I, Nucleoside diphosphate kinase Gro 1e-87
PRK00668134 PRK00668, ndk, mulitfunctional nucleoside diphosph 4e-85
pfam00334135 pfam00334, NDK, Nucleoside diphosphate kinase 1e-83
PTZ00093149 PTZ00093, PTZ00093, nucleoside diphosphate kinase, 9e-82
smart00562135 smart00562, NDK, Enzymes that catalyze nonsubstrat 5e-79
COG0105135 COG0105, Ndk, Nucleoside diphosphate kinase [Nucle 1e-77
PLN02619238 PLN02619, PLN02619, nucleoside-diphosphate kinase 2e-73
cd00595133 cd00595, NDPk, Nucleoside diphosphate kinases (NDP 8e-57
PRK14540134 PRK14540, PRK14540, nucleoside diphosphate kinase; 4e-52
PRK14545139 PRK14545, PRK14545, nucleoside diphosphate kinase; 2e-38
PRK14542137 PRK14542, PRK14542, nucleoside diphosphate kinase; 1e-36
PRK14541140 PRK14541, PRK14541, nucleoside diphosphate kinase; 3e-36
PRK14544183 PRK14544, PRK14544, nucleoside diphosphate kinase; 6e-35
PRK14543169 PRK14543, PRK14543, nucleoside diphosphate kinase; 2e-34
PLN02931177 PLN02931, PLN02931, nucleoside diphosphate kinase 2e-29
cd04415131 cd04415, NDPk7A, Nucleoside diphosphate kinase 7 d 9e-29
cd04414135 cd04414, NDPk6, Nucleoside diphosphate kinase 6 (N 5e-28
cd04412134 cd04412, NDPk7B, Nucleoside diphosphate kinase 7 d 3e-23
cd04418132 cd04418, NDPk5, Nucleoside diphosphate kinase homo 1e-22
cd04416132 cd04416, NDPk_TX, NDP kinase domain of thioredoxin 2e-20
>gnl|CDD|239876 cd04413, NDPk_I, Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate Back     alignment and domain information 
 Score =  250 bits (642), Expect = 1e-87
 Identities = 82/130 (63%), Positives = 104/130 (80%)

Query: 2   EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSL 61
           E+T ++IKPDGVQRGL+GEII RFE+KG  +  LK++ +    AE+HY +   KPFF  L
Sbjct: 1   ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHKGKPFFPEL 60

Query: 62  IEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVE 121
           +E++TSGPVVAM+ EGE  VKT R ++GATNPA +APGTIRGD A+  GRNI+HGSDSVE
Sbjct: 61  VEFMTSGPVVAMVLEGENAVKTVRKLMGATNPADAAPGTIRGDFALSIGRNIVHGSDSVE 120

Query: 122 SAQKEIALWF 131
           SA++EIALWF
Sbjct: 121 SAEREIALWF 130

The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that are most essential for catalysis. Length = 130
>gnl|CDD|179085 PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated Back     alignment and domain information
>gnl|CDD|201162 pfam00334, NDK, Nucleoside diphosphate kinase Back     alignment and domain information
>gnl|CDD|173387 PTZ00093, PTZ00093, nucleoside diphosphate kinase, cytosolic; Provisional Back     alignment and domain information
>gnl|CDD|197791 smart00562, NDK, Enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates Back     alignment and domain information
>gnl|CDD|223183 COG0105, Ndk, Nucleoside diphosphate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|178228 PLN02619, PLN02619, nucleoside-diphosphate kinase Back     alignment and domain information
>gnl|CDD|238335 cd00595, NDPk, Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation Back     alignment and domain information
>gnl|CDD|184733 PRK14540, PRK14540, nucleoside diphosphate kinase; Provisional Back     alignment and domain information
>gnl|CDD|184734 PRK14545, PRK14545, nucleoside diphosphate kinase; Provisional Back     alignment and domain information
>gnl|CDD|173008 PRK14542, PRK14542, nucleoside diphosphate kinase; Provisional Back     alignment and domain information
>gnl|CDD|173007 PRK14541, PRK14541, nucleoside diphosphate kinase; Provisional Back     alignment and domain information
>gnl|CDD|173010 PRK14544, PRK14544, nucleoside diphosphate kinase; Provisional Back     alignment and domain information
>gnl|CDD|237749 PRK14543, PRK14543, nucleoside diphosphate kinase; Provisional Back     alignment and domain information
>gnl|CDD|215503 PLN02931, PLN02931, nucleoside diphosphate kinase family protein Back     alignment and domain information
>gnl|CDD|239878 cd04415, NDPk7A, Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B Back     alignment and domain information
>gnl|CDD|239877 cd04414, NDPk6, Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues Back     alignment and domain information
>gnl|CDD|239875 cd04412, NDPk7B, Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B Back     alignment and domain information
>gnl|CDD|239880 cd04418, NDPk5, Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species Back     alignment and domain information
>gnl|CDD|239879 cd04416, NDPk_TX, NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 148
PTZ00093149 nucleoside diphosphate kinase, cytosolic; Provisio 100.0
PRK14542137 nucleoside diphosphate kinase; Provisional 100.0
PRK14541140 nucleoside diphosphate kinase; Provisional 100.0
COG0105135 Ndk Nucleoside diphosphate kinase [Nucleotide tran 100.0
PRK14543169 nucleoside diphosphate kinase; Provisional 100.0
PLN02619238 nucleoside-diphosphate kinase 100.0
PRK14545139 nucleoside diphosphate kinase; Provisional 100.0
PRK14540134 nucleoside diphosphate kinase; Provisional 100.0
PRK00668134 ndk mulitfunctional nucleoside diphosphate kinase/ 100.0
cd04415131 NDPk7A Nucleoside diphosphate kinase 7 domain A (N 100.0
cd04413130 NDPk_I Nucleoside diphosphate kinase Group I (NDPk 100.0
cd04418132 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP 100.0
PLN02931177 nucleoside diphosphate kinase family protein 100.0
cd04414135 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 100.0
cd04412134 NDPk7B Nucleoside diphosphate kinase 7 domain B (N 100.0
PF00334135 NDK: Nucleoside diphosphate kinase; InterPro: IPR0 100.0
cd00595133 NDPk Nucleoside diphosphate kinases (NDP kinases, 100.0
cd04416132 NDPk_TX NDP kinase domain of thioredoxin domain-co 100.0
smart00562135 NDK These are enzymes that catalyze nonsubstrate s 100.0
KOG0888156 consensus Nucleoside diphosphate kinase [Nucleotid 100.0
PRK14544183 nucleoside diphosphate kinase; Provisional 100.0
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.8e-52  Score=305.80  Aligned_cols=147  Identities=62%  Similarity=1.106  Sum_probs=142.0

Q ss_pred             CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047            1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV   80 (148)
Q Consensus         1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na   80 (148)
                      +|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|+++|+|||+++|+|.|+||
T Consensus         2 ~e~Tl~lIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~gk~ff~~Lv~~m~sGp~val~l~g~na   81 (149)
T PTZ00093          2 SERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGKPFFPGLVKYISSGPVVCMVWEGKNV   81 (149)
T ss_pred             CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCEEEEEEeCCCH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC-CCcccccCCCCccc
Q 032047           81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD-GPINWQSSLHPWIY  147 (148)
Q Consensus        81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~-~~~~~~~~~~~~~~  147 (148)
                      |++||+++||++|..+.|+|||+.||++.++|+|||||++++|.+|++|||++ .+.+|+..+..|+|
T Consensus        82 v~~~R~l~Gpt~p~~a~p~siR~~fg~~~~~NavH~Sds~e~A~~Ei~~fF~~~~~~~~~~~~~~~~~  149 (149)
T PTZ00093         82 VKQGRKLLGATNPLESAPGTIRGDFCVDVGRNVIHGSDSVESAKREIALWFKPEELVSWTSHSSKWIY  149 (149)
T ss_pred             HHHHHHHhCCCCccccCCCcchhhhccccccceeecCCCHHHHHHHHHHhCChhhccCccccchhhhC
Confidence            99999999999999999999999999999999999999999999999999987 68889888877765

>PRK14542 nucleoside diphosphate kinase; Provisional Back     alignment and domain information
>PRK14541 nucleoside diphosphate kinase; Provisional Back     alignment and domain information
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK14543 nucleoside diphosphate kinase; Provisional Back     alignment and domain information
>PLN02619 nucleoside-diphosphate kinase Back     alignment and domain information
>PRK14545 nucleoside diphosphate kinase; Provisional Back     alignment and domain information
>PRK14540 nucleoside diphosphate kinase; Provisional Back     alignment and domain information
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated Back     alignment and domain information
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B Back     alignment and domain information
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate Back     alignment and domain information
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species Back     alignment and domain information
>PLN02931 nucleoside diphosphate kinase family protein Back     alignment and domain information
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues Back     alignment and domain information
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B Back     alignment and domain information
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2 Back     alignment and domain information
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation Back     alignment and domain information
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively Back     alignment and domain information
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates Back     alignment and domain information
>KOG0888 consensus Nucleoside diphosphate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK14544 nucleoside diphosphate kinase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query148
1u8w_A149 Crystal Structure Of Arabidopsis Thaliana Nucleosid 9e-70
1pku_A150 Crystal Structure Of Nucleoside Diphosphate Kinase 2e-60
1bhn_A152 Nucleoside Diphosphate Kinase Isoform A From Bovine 4e-52
1be4_A151 Nucleoside Diphosphate Kinase Isoform B From Bovine 6e-52
1s57_A153 Crystal Structure Of Nucleoside Diphosphate Kinase 1e-51
1jxv_A152 Crystal Structure Of Human Nucleoside Diphosphate K 1e-51
3l7u_A172 Crystal Structure Of Human Nm23-H1 Length = 172 2e-51
1ndl_A153 The Awd Nucleotide Diphosphate Kinase From Drosophi 4e-51
2hve_A152 S120g Mutant Of Human Nucleoside Diphosphate Kinase 4e-51
1nsk_R152 The Crystal Structure Of A Human Nucleoside Diphosp 5e-51
1nue_A151 X-ray Structure Of Nm23 Human Nucleoside Diphosphat 5e-51
3bbc_A151 Crystal Structure Of R88a Mutant Of The Nm23-H2 Tra 3e-50
1nsq_A153 Mechanism Of Phosphate Transfer By Nucleoside Dipho 4e-50
1w7w_A182 Structure And Mutational Analysis Of A Plant Mitoch 7e-50
1ucn_A152 X-Ray Structure Of Human Nucleoside Diphosphate Kin 1e-49
3ngr_A151 Crystal Structure Of Leishmania Nucleoside Diphosph 4e-49
3prv_A157 Nucleoside Diphosphate Kinase B From Trypanosoma Cr 8e-49
1zs6_A169 Structure Of Human Nucleoside-diphosphate Kinase 3 2e-48
4fkx_A161 Crystal Structure Of Nucleoside Diphosphate Kinase 1e-47
4f36_A157 Crystal Structure Of Nucleoside Diphosphate Kinase 2e-47
1ndp_A155 Adenosine 5'-Diphosphate Binding And The Active Sit 1e-46
2vu5_A148 Crystal Structure Of Pndk From Bacillus Anthracis L 1e-46
1npk_A154 Refined X-Ray Structure Of Dictyostelium Nucleoside 1e-46
3b54_A161 Saccharomyces Cerevisiae Nucleoside Diphosphate Kin 5e-46
1hhq_A155 Role Of Active Site Resiude Lys16 In Nucleoside Dip 5e-46
1lwx_A155 Azt Diphosphate Binding To Nucleoside Diphosphate K 1e-45
3r9l_A155 Crystal Structure Of Nucleoside Diphosphate Kinase 1e-45
1leo_A150 P100s Nucleoside Diphosphate Kinase Length = 150 1e-45
1ndk_A155 X-Ray Structure Of Nucleoside Diphosphate Kinase Le 1e-45
1hlw_A155 Structure Of The H122a Mutant Of The Nucleoside Dip 2e-45
1nsp_A155 Mechanism Of Phosphate Transfer By Nucleoside Dipho 2e-45
1b4s_A155 Structure Of Nucleoside Diphosphate Kinase H122g Mu 2e-45
1ncl_A150 Thermal Stability Of Hexameric And Tetrameric Nucle 2e-45
3q83_A157 Crystal Structure Of Staphylococcus Aureus Nucleosi 2e-44
1pae_X155 Nucleoside Diphosphate Kinase Length = 155 2e-44
1xiq_A157 Plasmodium Falciparum Nucleoside Diphosphate Kinase 9e-44
1mn7_A155 Ndp Kinase Mutant (H122g;n119s;f64w) In Complex Wit 1e-43
1wkj_A137 Crystal Structure Of Nucleoside Diphosphate Kinase 1e-42
1ehw_A162 Human Nucleoside Diphosphate Kinase 4 Length = 162 6e-42
2zua_A174 Crystal Structure Of Nucleoside Diphosphate Kinase 6e-42
1k44_A136 Mycobacterium Tuberculosis Nucleoside Diphosphate K 5e-40
2az3_A164 Structure Of A Halophilic Nucleoside Diphosphate Ki 2e-39
2az1_A181 Structure Of A Halophilic Nucleoside Diphosphate Ki 3e-39
3js9_A156 Crystal Structure Of Nucleoside Diphosphate Kinase 4e-39
2cwk_A160 Crystal Structure Of Nucleotide Diphosphate Kinase 2e-37
3mpd_A151 Crystal Structure Of Nucleoside Diphosphate Kinase 6e-37
1nb2_A150 Crystal Structure Of Nucleoside Diphosphate Kinase 2e-36
2nck_R144 Crystal Structure Of Myxococcus Xanthus Nucleoside 2e-32
3ddi_A146 Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R1 8e-31
3vgu_A141 E134a Mutant Nucleoside Diphosphate Kinase Derived 4e-30
3vgs_A141 Wild-Type Nucleoside Diphosphate Kinase Derived Fro 4e-30
3em1_A146 Crystal Structure Of The Mimivirus Ndk +kpn-N62l Do 4e-30
2hur_A142 Escherichia Coli Nucleoside Diphosphate Kinase Leng 5e-30
3emt_A146 Crystal Structure Of The Mimivirus Ndk +kpn-R107g D 5e-30
3pj9_A140 Crystal Structure Of A Nucleoside Diphosphate Kinas 1e-29
3ejm_A146 Crystal Structure Of The Mimivirus Ndk +kpn Mutant 3e-29
4dut_A145 The Structure Of Nucleoside Diphosphate Kinase (Ndk 2e-27
3fbe_A142 Crystal Structure Of The Mimivirus Ndk N62l-R107g D 9e-26
3ztq_A142 Hexagonal Crystal Form P61 Of The Aquifex Aeolicus 3e-25
3fbf_A142 Crystal Structure Of The Mimivirus Ndk N62l Mutant 5e-25
3evw_A142 Crystal Structure Of The Mimivirus Ndk R107g Mutant 6e-25
4di6_A190 Crystal Structure Of Nucleoside-Diphosphate Kinase 1e-24
2b8p_A157 Crystal Structure Of Acanthamoeba Polyphaga Mimivir 3e-24
2b8q_A142 X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus 3e-24
1xqi_A195 Crystal Structure Analysis Of An Ndp Kinase From Py 2e-18
>pdb|1U8W|A Chain A, Crystal Structure Of Arabidopsis Thaliana Nucleoside Diphosphate Kinase 1 Length = 149 Back     alignment and structure 
Iteration: 1

 Score =  258 bits (659), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 120/148 (81%), Positives = 134/148 (90%)
Query: 1   MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
           MEQTFIMIKPDGVQRGL+GE+I RFEKKGF+LKGLKL++V+R FAEKHYEDLSSK FF  
Sbjct: 1   MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSG 60
Query: 61  LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
           L++YI SGPVVAMIWEG+ VV TGR IIGATNPA S PGTIRGD AI  GRN+IHGSDSV
Sbjct: 61  LVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSV 120
Query: 121 ESAQKEIALWFPDGPINWQSSLHPWIYE 148
           ESA+KEIALWFPDGP+NWQSS+HPW+YE
Sbjct: 121 ESARKEIALWFPDGPVNWQSSVHPWVYE 148
>pdb|1PKU|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From Rice Length = 150 Back     alignment and structure
>pdb|1BHN|A Chain A, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina Length = 152 Back     alignment and structure
>pdb|1BE4|A Chain A, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina Length = 151 Back     alignment and structure
>pdb|1S57|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From Arabidopsis Length = 153 Back     alignment and structure
>pdb|1JXV|A Chain A, Crystal Structure Of Human Nucleoside Diphosphate Kinase A Length = 152 Back     alignment and structure
>pdb|3L7U|A Chain A, Crystal Structure Of Human Nm23-H1 Length = 172 Back     alignment and structure
>pdb|1NDL|A Chain A, The Awd Nucleotide Diphosphate Kinase From Drosophila Length = 153 Back     alignment and structure
>pdb|2HVE|A Chain A, S120g Mutant Of Human Nucleoside Diphosphate Kinase A Complexed With Adp Length = 152 Back     alignment and structure
>pdb|1NSK|R Chain R, The Crystal Structure Of A Human Nucleoside Diphosphate Kinase, Nm23-H2 Length = 152 Back     alignment and structure
>pdb|1NUE|A Chain A, X-ray Structure Of Nm23 Human Nucleoside Diphosphate Kinase B Complexed With Gdp At 2 Angstroms Resolution Length = 151 Back     alignment and structure
>pdb|3BBC|A Chain A, Crystal Structure Of R88a Mutant Of The Nm23-H2 Transcription Factor Length = 151 Back     alignment and structure
>pdb|1NSQ|A Chain A, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate Kinase: X- Ray Structures Of A Phospho-Histidine Intermediate Of The Enzymes From Drosophila And Dictyostelium Length = 153 Back     alignment and structure
>pdb|1W7W|A Chain A, Structure And Mutational Analysis Of A Plant Mitochondrial Nucleoside Diphosphate Kinase: Identification Of Residues Involved In Serine Phosphorylation And Oligomerization. Length = 182 Back     alignment and structure
>pdb|1UCN|A Chain A, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A Complexed With Adp At 2 A Resolution Length = 152 Back     alignment and structure
>pdb|3NGR|A Chain A, Crystal Structure Of Leishmania Nucleoside Diphosphate Kinase B With Unordered Nucleotide-Binding Loop. Length = 151 Back     alignment and structure
>pdb|3PRV|A Chain A, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi Length = 157 Back     alignment and structure
>pdb|1ZS6|A Chain A, Structure Of Human Nucleoside-diphosphate Kinase 3 Length = 169 Back     alignment and structure
>pdb|4FKX|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From Trypanosoma Brucei Bound To Cdp Length = 161 Back     alignment and structure
>pdb|4F36|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From Trypanosoma Brucei, Apo Form Length = 157 Back     alignment and structure
>pdb|1NDP|A Chain A, Adenosine 5'-Diphosphate Binding And The Active Site Of Nucleoside Diphosphate Kinase Length = 155 Back     alignment and structure
>pdb|2VU5|A Chain A, Crystal Structure Of Pndk From Bacillus Anthracis Length = 148 Back     alignment and structure
>pdb|1NPK|A Chain A, Refined X-Ray Structure Of Dictyostelium Nucleoside Diphosphate Kinase At 1,8 Angstroms Resolution Length = 154 Back     alignment and structure
>pdb|3B54|A Chain A, Saccharomyces Cerevisiae Nucleoside Diphosphate Kinase Length = 161 Back     alignment and structure
>pdb|1HHQ|A Chain A, Role Of Active Site Resiude Lys16 In Nucleoside Diphosphate Kinase Length = 155 Back     alignment and structure
>pdb|1LWX|A Chain A, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase Length = 155 Back     alignment and structure
>pdb|3R9L|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From Giardia Lamblia Featuring A Disordered Dinucleotide Binding Site Length = 155 Back     alignment and structure
>pdb|1LEO|A Chain A, P100s Nucleoside Diphosphate Kinase Length = 150 Back     alignment and structure
>pdb|1NDK|A Chain A, X-Ray Structure Of Nucleoside Diphosphate Kinase Length = 155 Back     alignment and structure
>pdb|1HLW|A Chain A, Structure Of The H122a Mutant Of The Nucleoside Diphosphate Kinase Length = 155 Back     alignment and structure
>pdb|1NSP|A Chain A, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate Kinase: X- Ray Structures Of A Phospho-Histidine Intermediate Of The Enzymes From Drosophila And Dictyostelium Length = 155 Back     alignment and structure
>pdb|1B4S|A Chain A, Structure Of Nucleoside Diphosphate Kinase H122g Mutant Length = 155 Back     alignment and structure
>pdb|1NCL|A Chain A, Thermal Stability Of Hexameric And Tetrameric Nucleoside, Diphosphate Kinases Length = 150 Back     alignment and structure
>pdb|3Q83|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside Diphosphate Kinase Length = 157 Back     alignment and structure
>pdb|1PAE|X Chain X, Nucleoside Diphosphate Kinase Length = 155 Back     alignment and structure
>pdb|1XIQ|A Chain A, Plasmodium Falciparum Nucleoside Diphosphate Kinase B Length = 157 Back     alignment and structure
>pdb|1MN7|A Chain A, Ndp Kinase Mutant (H122g;n119s;f64w) In Complex With Abazttp Length = 155 Back     alignment and structure
>pdb|1WKJ|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From Thermus Thermophilus Hb8 Length = 137 Back     alignment and structure
>pdb|1EHW|A Chain A, Human Nucleoside Diphosphate Kinase 4 Length = 162 Back     alignment and structure
>pdb|2ZUA|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From Haloarcula Quadrata Length = 174 Back     alignment and structure
>pdb|1K44|A Chain A, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase Length = 136 Back     alignment and structure
>pdb|2AZ3|A Chain A, Structure Of A Halophilic Nucleoside Diphosphate Kinase From Halobacterium Salinarum In Complex With Cdp Length = 164 Back     alignment and structure
>pdb|2AZ1|A Chain A, Structure Of A Halophilic Nucleoside Diphosphate Kinase From Halobacterium Salinarum Length = 181 Back     alignment and structure
>pdb|3JS9|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase Family Protein From Babesia Bovis Length = 156 Back     alignment and structure
>pdb|2CWK|A Chain A, Crystal Structure Of Nucleotide Diphosphate Kinase From Pyrococcus Horikoshii Length = 160 Back     alignment and structure
>pdb|3MPD|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From Encephalitozoon Cuniculi, Cubic Form, Apo Length = 151 Back     alignment and structure
>pdb|1NB2|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From Bacillus Halodenitrificans Length = 150 Back     alignment and structure
>pdb|2NCK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside Diphosphate Kinase And Its Interaction With A Nucleotide Substrate At 2.0 Angstroms Resolution Length = 144 Back     alignment and structure
>pdb|3DDI|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g Triple Mutant Complexed With Tdp Length = 146 Back     alignment and structure
>pdb|3VGU|A Chain A, E134a Mutant Nucleoside Diphosphate Kinase Derived From Halomonas Sp. 593 Length = 141 Back     alignment and structure
>pdb|3VGS|A Chain A, Wild-Type Nucleoside Diphosphate Kinase Derived From Halomonas Sp. 593 Length = 141 Back     alignment and structure
>pdb|3EM1|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double Mutant Complexed With Dtdp Length = 146 Back     alignment and structure
>pdb|2HUR|A Chain A, Escherichia Coli Nucleoside Diphosphate Kinase Length = 142 Back     alignment and structure
>pdb|3EMT|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-R107g Double Mutant Complexed With Dgdp Length = 146 Back     alignment and structure
>pdb|3PJ9|A Chain A, Crystal Structure Of A Nucleoside Diphosphate Kinase From Campylobacter Jejuni Length = 140 Back     alignment and structure
>pdb|3EJM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn Mutant Complexed With Gdp Length = 146 Back     alignment and structure
>pdb|4DUT|A Chain A, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From Burkholderia Thailandensis Length = 145 Back     alignment and structure
>pdb|3FBE|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double Mutant Complexed With Gdp Length = 142 Back     alignment and structure
>pdb|3ZTQ|A Chain A, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus Nucleoside Diphosphate Kinase Length = 142 Back     alignment and structure
>pdb|3FBF|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant Complexed With Dtdp Length = 142 Back     alignment and structure
>pdb|3EVW|A Chain A, Crystal Structure Of The Mimivirus Ndk R107g Mutant Complexed With Dtdp Length = 142 Back     alignment and structure
>pdb|4DI6|A Chain A, Crystal Structure Of Nucleoside-Diphosphate Kinase From Borrelia Burgdorferi Length = 190 Back     alignment and structure
>pdb|2B8P|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus Ndk, The First Viral Nucleoside Diphosphate Kinase Length = 157 Back     alignment and structure
>pdb|2B8Q|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus Nucleoside Diphosphate Kinase Complexed With Tdp Length = 142 Back     alignment and structure
>pdb|1XQI|A Chain A, Crystal Structure Analysis Of An Ndp Kinase From Pyrobaculum Aerophilum Length = 195 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query148
1u8w_A149 Nucleoside diphosphate kinase I; nucleotide diphos 1e-102
1pku_A150 Nucleoside diphosphate kinase I; RICE, transferase 1e-102
3mpd_A151 Nucleoside diphosphate kinase; ssgcid, NIH, niaid, 1e-101
1s57_A153 Nucleoside diphosphate kinase II; transferase; HET 1e-100
3q8u_A157 Nucleoside diphosphate kinase; ferridoxin fold, al 1e-100
3bbb_A151 Nucleoside diphosphate kinase B; transcription fac 1e-100
1zs6_A169 Nucleoside diphosphate kinase 3; nucleotide metabo 1e-100
3b54_A161 NDK, NDP kinase, nucleoside diphosphate kinase; al 1e-100
4fkx_A161 NDK B, nucleoside diphosphate kinase; structural g 1e-99
1w7w_A182 Nucleoside diphosphate kinase; NDPK3, transferase; 1e-99
3l7u_A172 Nucleoside diphosphate kinase A; ATP-binding, nucl 2e-99
1nb2_A150 Nucleoside diphosphate kinase; bacillus halodenitr 2e-99
3r9l_A155 Nucleoside diphosphate kinase; structural genomics 2e-99
3js9_A156 Nucleoside diphosphate kinase family protein; niai 3e-99
3fkb_A155 NDP kinase, NDK, nucleoside diphosphate kinase, cy 4e-99
2vu5_A148 Nucleoside diphosphate kinase; nucleotide-binding, 5e-99
1xiq_A157 Nucleoside diphosphate kinase B; protein structure 7e-99
2az3_A164 Nucleoside diphosphate kinase; halophilic, transfe 1e-97
1ehw_A162 NDPK H4, nucleoside diphosphate kinase; NM23, mito 5e-94
2dxe_A160 Nucleoside diphosphate kinase; nucleoside binding, 8e-94
1nhk_R144 Nucleoside diphosphate kinase; phosphotransferase; 3e-93
1wkj_A137 Nucleoside diphosphate kinase; thermus thermophilu 5e-93
3evo_A146 NDP kinase, NDK, nucleoside diphosphate kinase; ph 8e-93
2hur_A142 NDK, nucleoside diphosphate kinase, NDP kinase; ty 2e-92
1k44_A136 Nucleoside diphosphate kinase; nucleoside triphosp 3e-92
4dz6_A190 Nucleoside diphosphate kinase; ssgcid, niaid, vana 4e-91
4ek2_A145 Nucleoside diphosphate kinase; seattle structural 1e-90
3ztp_A142 Nucleoside diphosphate kinase; transferase; HET: G 3e-88
1xqi_A195 Nucleoside diphosphate kinase; alpha/beta sandwich 2e-76
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1 Length = 149 Back     alignment and structure
 Score =  289 bits (742), Expect = e-102
 Identities = 120/148 (81%), Positives = 134/148 (90%)

Query: 1   MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
           MEQTFIMIKPDGVQRGL+GE+I RFEKKGF+LKGLKL++V+R FAEKHYEDLSSK FF  
Sbjct: 1   MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSG 60

Query: 61  LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
           L++YI SGPVVAMIWEG+ VV TGR IIGATNPA S PGTIRGD AI  GRN+IHGSDSV
Sbjct: 61  LVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSV 120

Query: 121 ESAQKEIALWFPDGPINWQSSLHPWIYE 148
           ESA+KEIALWFPDGP+NWQSS+HPW+YE
Sbjct: 121 ESARKEIALWFPDGPVNWQSSVHPWVYE 148
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1 Length = 150 Back     alignment and structure
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} Length = 151 Back     alignment and structure
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A* Length = 153 Back     alignment and structure
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A* Length = 157 Back     alignment and structure
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A* Length = 151 Back     alignment and structure
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1 Length = 169 Back     alignment and structure
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae} Length = 161 Back     alignment and structure
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A* Length = 161 Back     alignment and structure
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1 Length = 182 Back     alignment and structure
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens} Length = 172 Back     alignment and structure
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1 Length = 150 Back     alignment and structure
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} Length = 155 Back     alignment and structure
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} Length = 156 Back     alignment and structure
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ... Length = 155 Back     alignment and structure
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis} Length = 148 Back     alignment and structure
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1 Length = 157 Back     alignment and structure
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A Length = 164 Back     alignment and structure
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1 Length = 162 Back     alignment and structure
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A* Length = 160 Back     alignment and structure
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A Length = 144 Back     alignment and structure
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A* Length = 137 Back     alignment and structure
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ... Length = 146 Back     alignment and structure
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli} Length = 142 Back     alignment and structure
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1 Length = 136 Back     alignment and structure
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A* Length = 190 Back     alignment and structure
>4ek2_A Nucleoside diphosphate kinase; seattle structural genomics center for infectious disease, S DAMP, niaid; HET: DA; 2.00A {Burkholderia thailandensis} PDB: 4dut_A* Length = 145 Back     alignment and structure
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A Length = 142 Back     alignment and structure
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1 Length = 195 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query148
3q8u_A157 Nucleoside diphosphate kinase; ferridoxin fold, al 100.0
1u8w_A149 Nucleoside diphosphate kinase I; nucleotide diphos 100.0
1pku_A150 Nucleoside diphosphate kinase I; RICE, transferase 100.0
4fkx_A161 NDK B, nucleoside diphosphate kinase; structural g 100.0
3r9l_A155 Nucleoside diphosphate kinase; structural genomics 100.0
3l7u_A172 Nucleoside diphosphate kinase A; ATP-binding, nucl 100.0
3fkb_A155 NDP kinase, NDK, nucleoside diphosphate kinase, cy 100.0
1xiq_A157 Nucleoside diphosphate kinase B; protein structure 100.0
3mpd_A151 Nucleoside diphosphate kinase; ssgcid, NIH, niaid, 100.0
2vu5_A148 Nucleoside diphosphate kinase; nucleotide-binding, 100.0
1nb2_A150 Nucleoside diphosphate kinase; bacillus halodenitr 100.0
1s57_A153 Nucleoside diphosphate kinase II; transferase; HET 100.0
4hr2_A145 Nucleoside diphosphate kinase; ssgcid, seattle str 100.0
3bbb_A151 Nucleoside diphosphate kinase B; transcription fac 100.0
3js9_A156 Nucleoside diphosphate kinase family protein; niai 100.0
3b54_A161 NDK, NDP kinase, nucleoside diphosphate kinase; al 100.0
1zs6_A169 Nucleoside diphosphate kinase 3; nucleotide metabo 100.0
2dxe_A160 Nucleoside diphosphate kinase; nucleoside binding, 100.0
2az3_A164 Nucleoside diphosphate kinase; halophilic, transfe 100.0
1w7w_A182 Nucleoside diphosphate kinase; NDPK3, transferase; 100.0
2hur_A142 NDK, nucleoside diphosphate kinase, NDP kinase; ty 100.0
1nhk_R144 Nucleoside diphosphate kinase; phosphotransferase; 100.0
4dz6_A190 Nucleoside diphosphate kinase; ssgcid, niaid, vana 100.0
3evo_A146 NDP kinase, NDK, nucleoside diphosphate kinase; ph 100.0
1k44_A136 Nucleoside diphosphate kinase; nucleoside triphosp 100.0
1wkj_A137 Nucleoside diphosphate kinase; thermus thermophilu 100.0
3ztp_A142 Nucleoside diphosphate kinase; transferase; HET: G 100.0
1ehw_A162 NDPK H4, nucleoside diphosphate kinase; NM23, mito 100.0
1xqi_A195 Nucleoside diphosphate kinase; alpha/beta sandwich 100.0
3bh7_B352 Protein XRP2; protein-protein complex, GTPase acti 100.0
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A* Back     alignment and structure
Probab=100.00  E-value=1.6e-56  Score=330.39  Aligned_cols=148  Identities=55%  Similarity=0.972  Sum_probs=145.5

Q ss_pred             CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047            1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV   80 (148)
Q Consensus         1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na   80 (148)
                      ||+||+|||||++.+|++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+||||++|+|+|+||
T Consensus         1 mErTl~iIKPDav~~~~~G~Ii~~ie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na   80 (157)
T 3q8u_A            1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDA   80 (157)
T ss_dssp             CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred             CceEEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHCCCccHHHHHHHhcCCCEEEEEEeCCCH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCC-CCcccccCCCCcccC
Q 032047           81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPD-GPINWQSSLHPWIYE  148 (148)
Q Consensus        81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~-~~~~~~~~~~~~~~~  148 (148)
                      |++||+++|||+|..|.|+|||++||.+..+|+||||||+++|.+|+++|||+ .+++|...++.|+|+
T Consensus        81 V~~~R~l~GpTdp~~A~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~  149 (157)
T 3q8u_A           81 VNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE  149 (157)
T ss_dssp             HHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGGCCCCCCTTHHHHCC
T ss_pred             HHHHHHHcCCCChhhcCCCChHHHhCCCCCCeeEEeCCCHHHHHHHHHHcCChHhhcccccchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999987 699999999999996
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1 Back     alignment and structure
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1 Back     alignment and structure
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A* Back     alignment and structure
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1 Back     alignment and structure
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens} Back     alignment and structure
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ... Back     alignment and structure
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1 Back     alignment and structure
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0 Back     alignment and structure
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis} Back     alignment and structure
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1 Back     alignment and structure
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A* Back     alignment and structure
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A* Back     alignment and structure
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A* Back     alignment and structure
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0 Back     alignment and structure
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae} Back     alignment and structure
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1 Back     alignment and structure
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A* Back     alignment and structure
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A Back     alignment and structure
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1 Back     alignment and structure
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli} Back     alignment and structure
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A Back     alignment and structure
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A* Back     alignment and structure
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ... Back     alignment and structure
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1 Back     alignment and structure
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A* Back     alignment and structure
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A Back     alignment and structure
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1 Back     alignment and structure
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1 Back     alignment and structure
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 148
d3bbba1150 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, 3e-63
d1s57a_153 d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK { 4e-62
d1u8wa_149 d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK { 5e-62
d1zs6a1152 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, 1e-61
d1xiqa_149 d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK { 9e-60
d1hlwa_150 d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK { 6e-59
d1w7wa_151 d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK { 2e-58
d2az3a1152 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, 4e-57
d1nhkl_143 d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK { 4e-57
d1wkja1137 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, 3e-56
d1xqia1182 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, 7e-56
d1nb2a_149 d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK { 8e-55
d1ehwa_143 d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK { 3e-54
d2dyaa1153 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, 3e-54
d1k44a_135 d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK { 2e-53
d2b8qa1128 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, 3e-46
>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK {Human (Homo sapiens) [TaxId: 9606]} Length = 150 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  188 bits (479), Expect = 3e-63
 Identities = 89/148 (60%), Positives = 111/148 (75%), Gaps = 1/148 (0%)

Query: 1   MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGS 60
           +E+TFI IKPDGVQRGLVGEII RFE+KGF L  +K +       ++HY DL  +PFF  
Sbjct: 3   LERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPG 62

Query: 61  LIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSV 120
           L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSV
Sbjct: 63  LVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSV 122

Query: 121 ESAQKEIALWFPDGPI-NWQSSLHPWIY 147
           +SA+KEI+LWF    + +++S  H W+Y
Sbjct: 123 KSAEKEISLWFKPEELVDYKSCAHDWVY 150
>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702]} Length = 153 Back     information, alignment and structure
>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure
>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK {Human(Homo sapiens), NDK3 [TaxId: 9606]} Length = 152 Back     information, alignment and structure
>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Length = 149 Back     information, alignment and structure
>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Dictyostelium discoideum [TaxId: 44689]} Length = 150 Back     information, alignment and structure
>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea (Pisum sativum) [TaxId: 3888]} Length = 151 Back     information, alignment and structure
>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK {Archaeon Halobacterium salinarum [TaxId: 2242]} Length = 152 Back     information, alignment and structure
>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK {Myxococcus xanthus [TaxId: 34]} Length = 143 Back     information, alignment and structure
>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK {Thermus thermophilus [TaxId: 274]} Length = 137 Back     information, alignment and structure
>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 182 Back     information, alignment and structure
>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus halodenitrificans [TaxId: 1482]} Length = 149 Back     information, alignment and structure
>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human (Homo sapiens), NDK4 [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 153 Back     information, alignment and structure
>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Mycobacterium tuberculosis [TaxId: 1773]} Length = 135 Back     information, alignment and structure
>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK {Mimivirus [TaxId: 315393]} Length = 128 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query148
d1u8wa_149 Nucleoside diphosphate kinase, NDK {Thale cress (A 100.0
d1w7wa_151 Nucleoside diphosphate kinase, NDK {Pea (Pisum sat 100.0
d1zs6a1152 Nucleoside diphosphate kinase, NDK {Human(Homo sap 100.0
d1xiqa_149 Nucleoside diphosphate kinase, NDK {Plasmodium fal 100.0
d1s57a_153 Nucleoside diphosphate kinase, NDK {Thale cress (A 100.0
d3bbba1150 Nucleoside diphosphate kinase, NDK {Human (Homo sa 100.0
d1nb2a_149 Nucleoside diphosphate kinase, NDK {Bacillus halod 100.0
d2az3a1152 Nucleoside diphosphate kinase, NDK {Archaeon Halob 100.0
d1ehwa_143 Nucleoside diphosphate kinase, NDK {Human (Homo sa 100.0
d1hlwa_150 Nucleoside diphosphate kinase, NDK {Dictyostelium 100.0
d2dyaa1153 Nucleoside diphosphate kinase, NDK {Archaeon Pyroc 100.0
d1nhkl_143 Nucleoside diphosphate kinase, NDK {Myxococcus xan 100.0
d1wkja1137 Nucleoside diphosphate kinase, NDK {Thermus thermo 100.0
d1k44a_135 Nucleoside diphosphate kinase, NDK {Mycobacterium 100.0
d1xqia1182 Nucleoside diphosphate kinase, NDK {Archaeon Pyrob 100.0
d2b8qa1128 Nucleoside diphosphate kinase, NDK {Mimivirus [Tax 100.0
>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleoside diphosphate kinase, NDK
family: Nucleoside diphosphate kinase, NDK
domain: Nucleoside diphosphate kinase, NDK
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.4e-56  Score=326.87  Aligned_cols=148  Identities=81%  Similarity=1.368  Sum_probs=145.9

Q ss_pred             CcEEEEEEcCcccccCchHHHHHHHHHcCCcccceEEeecCHHHHHHHHHHhcCCCChhhHHHhhhcCCEEEEEEeecCh
Q 032047            1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV   80 (148)
Q Consensus         1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~l~~~~~sgp~v~l~l~g~na   80 (148)
                      ||+||+|||||++.++++|+||++|+++||.|+++||++||+++|.+||.+|++++||+.+++||+||||++|+|+|.||
T Consensus         1 ~E~Tl~iIKPDav~~~~~geIi~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~~~~gk~ff~~lv~~m~sGPv~a~~l~g~~a   80 (149)
T d1u8wa_           1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNV   80 (149)
T ss_dssp             CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTCTTSSSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred             CceeEEEECchhhhccCHHHHHHHHHHcCCEEeEeeeeeCCHHHHHHHHHHHccchhhhhhhhhccCCCeeeeecccchH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHhHhCCCCCCCCCCCChhcccccCCCCcEEEeCCCHHHHHHHHhhcCCCCCcccccCCCCcccC
Q 032047           81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE  148 (148)
Q Consensus        81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~Sds~~~a~~e~~~fF~~~~~~~~~~~~~~~~~  148 (148)
                      |++||+++||++|..|.|+|||++||.+.++|++|||||+++|.+|+++|||+...+|+...+.|+|+
T Consensus        81 V~~~R~l~Gptdp~~A~p~tIR~~fg~~~~~N~vH~Sds~e~A~rEi~~fFp~~~i~~~~~~~~~~y~  148 (149)
T d1u8wa_          81 VLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSVESARKEIALWFPDGPVNWQSSVHPWVYE  148 (149)
T ss_dssp             HHHHHHHHCCSSTTTCCTTSHHHHHCCSTTSCSEEECSSHHHHHHHHHHHCTTCCCCCCCTTGGGTSC
T ss_pred             HHHHHHHhccCCcccCCCCchhccccccccccceECCCCHHHHHHHHHHcCCccccCccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999888999999999996
>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK {Human(Homo sapiens), NDK3 [TaxId: 9606]} Back     information, alignment and structure
>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Back     information, alignment and structure
>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702]} Back     information, alignment and structure
>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus halodenitrificans [TaxId: 1482]} Back     information, alignment and structure
>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK {Archaeon Halobacterium salinarum [TaxId: 2242]} Back     information, alignment and structure
>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human (Homo sapiens), NDK4 [TaxId: 9606]} Back     information, alignment and structure
>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK {Myxococcus xanthus [TaxId: 34]} Back     information, alignment and structure
>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK {Mimivirus [TaxId: 315393]} Back     information, alignment and structure