Citrus Sinensis ID: 032082

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
Protein Sequence
MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIVVFASFFLDFFNHITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcHHEEHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHc
Coil and Loop (DISEMBL)
mrwgvaagRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIVVFASFFLDFFNHITINIHASLTFIFSAagvnivpsMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL
Flexible Loop (DISEMBL)
MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIVVFASFFLDFFNHITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL
Low Complexity Region (SEG)
MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIVVFASFFLDFFNHITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL
Disordered region (IsUnstruct)
***GVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIVVFASFFLDFFNHITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWL****
Disordered Region (DISOPRED)
*******GRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIVVFASFFLDFFNHITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL
Disordered Region (DISEMBL)
********RKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIVVFASFFLDFFNHITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL
Disordered Region (DISPRO)
MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIVVFASFFLDFFNHITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIVVFASFFLDFFNHITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
224099213	306	predicted protein [Populus trichocarpa]	1.0	0.480	0.746	2e-56
255546947	306	conserved hypothetical protein [Ricinus	1.0	0.480	0.734	2e-55
356499992	287	PREDICTED: uncharacterized protein LOC10	1.0	0.512	0.683	5e-52
449499494	469	PREDICTED: uncharacterized LOC101204847	1.0	0.313	0.689	1e-51
449446255	301	PREDICTED: uncharacterized protein LOC10	1.0	0.488	0.689	1e-51
297737924	192	unnamed protein product [Vitis vinifera]	1.0	0.765	0.664	3e-50
225423785	286	PREDICTED: uncharacterized protein LOC10	1.0	0.513	0.664	3e-50
357496929	247	Membrane protein [Medicago truncatula] g	1.0	0.595	0.645	6e-49
297851064	293	hypothetical protein ARALYDRAFT_890129 [	1.0	0.501	0.632	7e-49
22329794	289	uncharacterized protein [Arabidopsis tha	1.0	0.508	0.632	2e-48

>gi|224099213|ref|XP_002311406.1| predicted protein [Populus trichocarpa] gi|222851226|gb|EEE88773.1| predicted protein [Populus trichocarpa]

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 118/158 (74%), Positives = 129/158 (81%), Gaps = 11/158 (6%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           +RWGVA GRKTMVATAMLL VLSGPVKAL YLLTHG++GF+MGSLWR+G +WGLSIFLCT
Sbjct: 149 LRWGVAGGRKTMVATAMLLFVLSGPVKALTYLLTHGLVGFTMGSLWRMGANWGLSIFLCT 208

Query: 61  IV--------VFASFFL---DFFNHITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 109
           I         V  S FL   +    ITINIHASLTFIF+AAG+N VPSMN IY +FG LV
Sbjct: 209 IARATGAVGYVLTSSFLIRENILALITINIHASLTFIFAAAGINTVPSMNFIYSLFGILV 268

Query: 110 LLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL 147
           +LNSGFFVFLLHLLYSVFLTRLGMK SLRLPRWLE AL
Sbjct: 269 VLNSGFFVFLLHLLYSVFLTRLGMKDSLRLPRWLEKAL 306

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546947|ref|XP_002514531.1| conserved hypothetical protein [Ricinus communis] gi|223546135|gb|EEF47637.1| conserved hypothetical protein [Ricinus communis]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 116/158 (73%), Positives = 127/158 (80%), Gaps = 11/158 (6%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           MRWGVAAGRKTMVATAMLL VLSGP+KAL YLLTHG++GF+MGSLWRL  DWGLSIFLCT
Sbjct: 148 MRWGVAAGRKTMVATAMLLFVLSGPLKALTYLLTHGIVGFTMGSLWRLRADWGLSIFLCT 207

Query: 61  IV--------VFASFFL---DFFNHITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 109
           I         VF + FL   +    ITINIHASLT IF+A G+N +PSMN+IY +FG LV
Sbjct: 208 IARATGAMGYVFVTSFLIRENILALITINIHASLTLIFAAIGINTIPSMNLIYTLFGILV 267

Query: 110 LLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL 147
           LLNSG FVFLLHLLYSVF TRLGMK SLRLPRWLE AL
Sbjct: 268 LLNSGSFVFLLHLLYSVFFTRLGMKDSLRLPRWLEKAL 305

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499992|ref|XP_003518819.1| PREDICTED: uncharacterized protein LOC100783446 [Glycine max]

 Score =  208 bits (530), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 108/158 (68%), Positives = 125/158 (79%), Gaps = 11/158 (6%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           MRWGV AGRKT+VAT +LLLVLSGPVKAL YLL HG++GF+MG+LWR G  W +SIFLCT
Sbjct: 130 MRWGVDAGRKTLVATTILLLVLSGPVKALTYLLKHGIVGFTMGTLWRTGASWNMSIFLCT 189

Query: 61  IV--------VFASFFL---DFFNHITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 109
           IV        V  S FL   +    ITINIHASLTF+ +AAGV  +PSMNVIY +FG LV
Sbjct: 190 IVRALGAVGFVLISSFLIRENILALITINIHASLTFLLTAAGVTSIPSMNVIYTLFGILV 249

Query: 110 LLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL 147
           L+NSG F+FLLHLLYSVFLTR+GMK+SLRLPRWLE A+
Sbjct: 250 LINSGCFMFLLHLLYSVFLTRMGMKSSLRLPRWLERAI 287

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499494|ref|XP_004160832.1| PREDICTED: uncharacterized LOC101204847 [Cucumis sativus]

 Score =  207 bits (528), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 109/158 (68%), Positives = 124/158 (78%), Gaps = 11/158 (6%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           MRWG++AGRKTMVAT +LLLVLSGPVKAL YLL HG++GF+MGSLWRLG +W  SIFLCT
Sbjct: 312 MRWGISAGRKTMVATFLLLLVLSGPVKALTYLLRHGLVGFTMGSLWRLGANWSTSIFLCT 371

Query: 61  IV--------VFASFFL---DFFNHITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 109
           IV        V  S FL   +    ITINIHASLT IF+A GVN++PSMN IY IFGTLV
Sbjct: 372 IVRAFGAVGYVLVSSFLIRENILALITINIHASLTLIFTAWGVNLIPSMNAIYAIFGTLV 431

Query: 110 LLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL 147
            LN G F+FLLHLLYS+FLTRLG+K SL LPRWLE A+
Sbjct: 432 FLNCGCFMFLLHLLYSIFLTRLGLKTSLTLPRWLEKAM 469

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446255|ref|XP_004140887.1| PREDICTED: uncharacterized protein LOC101204847 [Cucumis sativus]

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 109/158 (68%), Positives = 124/158 (78%), Gaps = 11/158 (6%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           MRWG++AGRKTMVAT +LLLVLSGPVKAL YLL HG++GF+MGSLWRLG +W  SIFLCT
Sbjct: 144 MRWGISAGRKTMVATFLLLLVLSGPVKALTYLLRHGLVGFTMGSLWRLGANWSTSIFLCT 203

Query: 61  IV--------VFASFFL---DFFNHITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 109
           IV        V  S FL   +    ITINIHASLT IF+A GVN++PSMN IY IFGTLV
Sbjct: 204 IVRAFGAVGYVLVSSFLIRENILALITINIHASLTLIFTAWGVNLIPSMNAIYAIFGTLV 263

Query: 110 LLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL 147
            LN G F+FLLHLLYS+FLTRLG+K SL LPRWLE A+
Sbjct: 264 FLNCGCFMFLLHLLYSIFLTRLGLKTSLTLPRWLEKAM 301

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737924|emb|CBI27125.3| unnamed protein product [Vitis vinifera]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 105/158 (66%), Positives = 126/158 (79%), Gaps = 11/158 (6%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           MRWGVAAGRKTMVAT MLL VLSGPVKA  YLL HG++G +MGSLWRLG +WGLSI LCT
Sbjct: 35  MRWGVAAGRKTMVATTMLLFVLSGPVKASTYLLLHGLVGLTMGSLWRLGANWGLSICLCT 94

Query: 61  IV--------VFASFFL---DFFNHITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 109
            V        V  S FL   +    IT+N+HAS+T++F+A GVN +PSM++IY +FGTL+
Sbjct: 95  FVRAMGAMGYVLISSFLIRENILALITLNVHASITYMFTAIGVNTIPSMDLIYALFGTLL 154

Query: 110 LLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL 147
           LLNSGFFVFLLH+LY+VFL+RLGMKASL +PRWLE A+
Sbjct: 155 LLNSGFFVFLLHILYAVFLSRLGMKASLTMPRWLEKAI 192

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423785|ref|XP_002279949.1| PREDICTED: uncharacterized protein LOC100256033 isoform 1 [Vitis vinifera]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 105/158 (66%), Positives = 126/158 (79%), Gaps = 11/158 (6%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           MRWGVAAGRKTMVAT MLL VLSGPVKA  YLL HG++G +MGSLWRLG +WGLSI LCT
Sbjct: 129 MRWGVAAGRKTMVATTMLLFVLSGPVKASTYLLLHGLVGLTMGSLWRLGANWGLSICLCT 188

Query: 61  IV--------VFASFFL---DFFNHITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 109
            V        V  S FL   +    IT+N+HAS+T++F+A GVN +PSM++IY +FGTL+
Sbjct: 189 FVRAMGAMGYVLISSFLIRENILALITLNVHASITYMFTAIGVNTIPSMDLIYALFGTLL 248

Query: 110 LLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL 147
           LLNSGFFVFLLH+LY+VFL+RLGMKASL +PRWLE A+
Sbjct: 249 LLNSGFFVFLLHILYAVFLSRLGMKASLTMPRWLEKAI 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357496929|ref|XP_003618753.1| Membrane protein [Medicago truncatula] gi|355493768|gb|AES74971.1| Membrane protein [Medicago truncatula]

 Score =  198 bits (503), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 102/158 (64%), Positives = 122/158 (77%), Gaps = 11/158 (6%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           MRWG+ AGRKTMVAT +LL VLSGPVKAL YLL HG++G++MG+LWRL   W LS+FLC 
Sbjct: 90  MRWGIDAGRKTMVATTILLFVLSGPVKALTYLLKHGIVGYTMGTLWRLETSWSLSVFLCA 149

Query: 61  IV--------VFASFFL---DFFNHITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 109
           IV        V  S FL   +    ITINIHASLTF+ +AAGVN +PSMN IY +FG LV
Sbjct: 150 IVRSIGAVGFVLISSFLIRENILALITINIHASLTFVLTAAGVNSIPSMNFIYTLFGILV 209

Query: 110 LLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL 147
           LLN G F+FLLH+LYSVFLTR+GMK+SL+LPRWL+ A+
Sbjct: 210 LLNGGCFMFLLHMLYSVFLTRMGMKSSLKLPRWLKKAI 247

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851064|ref|XP_002893413.1| hypothetical protein ARALYDRAFT_890129 [Arabidopsis lyrata subsp. lyrata] gi|297339255|gb|EFH69672.1| hypothetical protein ARALYDRAFT_890129 [Arabidopsis lyrata subsp. lyrata]

 Score =  198 bits (503), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 100/158 (63%), Positives = 126/158 (79%), Gaps = 11/158 (6%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           +RW +A GRKTMVAT MLL +LSGPVKAL Y LTHG++G ++GSLWR+G  W LSIF+CT
Sbjct: 136 IRWNIAGGRKTMVATVMLLFILSGPVKALTYFLTHGLVGLALGSLWRMGASWRLSIFVCT 195

Query: 61  IV--------VFASFFL---DFFNHITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 109
           +V        V  S FL   +    ITINIHASL+++F+A G+NI+PSM++IY+IFGT++
Sbjct: 196 MVRALGLIGYVLTSSFLIRENILAVITINIHASLSYVFTAMGLNIMPSMSLIYMIFGTVL 255

Query: 110 LLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL 147
           LLNSGFFV LLHLLYS+FLTRLGMK+SLRLP WL+ A+
Sbjct: 256 LLNSGFFVLLLHLLYSIFLTRLGMKSSLRLPAWLDKAI 293

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329794|ref|NP_173943.2| uncharacterized protein [Arabidopsis thaliana] gi|18252157|gb|AAL61911.1| unknown protein [Arabidopsis thaliana] gi|21386935|gb|AAM47871.1| unknown protein [Arabidopsis thaliana] gi|332192537|gb|AEE30658.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 100/158 (63%), Positives = 125/158 (79%), Gaps = 11/158 (6%)

Query: 1   MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
           +RW +A GRKTMVAT MLL +LSGPVKAL Y LTHG++G ++GSLW +G  W LSIFLCT
Sbjct: 132 IRWNIAGGRKTMVATVMLLFILSGPVKALTYFLTHGLVGLALGSLWSMGASWRLSIFLCT 191

Query: 61  IV--------VFASFFL---DFFNHITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 109
           +V        V  S FL   +    ITINIHASL+++F+A G+NI+PSM++IY+IFGT++
Sbjct: 192 MVRALGLIGYVLTSSFLIRENILAVITINIHASLSYVFTAMGLNIMPSMSLIYMIFGTVL 251

Query: 110 LLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL 147
           LLNSGFFV LLHLLYS+FLTRLGMK+SLRLP WL+ A+
Sbjct: 252 LLNSGFFVLLLHLLYSIFLTRLGMKSSLRLPAWLDKAI 289

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
TAIR|locus:2028815	289	AT1G26180 [Arabidopsis thalian	1.0	0.508	0.632	5.2e-49

TAIR|locus:2028815 AT1G26180 [Arabidopsis thaliana (taxid:3702)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 100/158 (63%), Positives = 125/158 (79%)

Query:     1 MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCT 60
             +RW +A GRKTMVAT MLL +LSGPVKAL Y LTHG++G ++GSLW +G  W LSIFLCT
Sbjct:   132 IRWNIAGGRKTMVATVMLLFILSGPVKALTYFLTHGLVGLALGSLWSMGASWRLSIFLCT 191

Query:    61 IV--------VFASFFL---DFFNHITINIHASLTFIFSAAGVNIVPSMNVIYVIFGTLV 109
             +V        V  S FL   +    ITINIHASL+++F+A G+NI+PSM++IY+IFGT++
Sbjct:   192 MVRALGLIGYVLTSSFLIRENILAVITINIHASLSYVFTAMGLNIMPSMSLIYMIFGTVL 251

Query:   110 LLNSGFFVFLLHLLYSVFLTRLGMKASLRLPRWLEMAL 147
             LLNSGFFV LLHLLYS+FLTRLGMK+SLRLP WL+ A+
Sbjct:   252 LLNSGFFVLLLHLLYSIFLTRLGMKSSLRLPAWLDKAI 289


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.335   0.145   0.457    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      147       147   0.00091  103 3  11 21  0.43    30
                                                     30  0.50    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  564 (60 KB)
  Total size of DFA:  130 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.42u 0.22s 14.64t   Elapsed:  00:00:00
  Total cpu time:  14.42u 0.22s 14.64t   Elapsed:  00:00:00
  Start:  Fri May 10 14:32:15 2013   End:  Fri May 10 14:32:15 2013

GO:0009507 "chloroplast" evidence=ISM

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00081028	hypothetical protein (306 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00101071	hypothetical protein (328 aa)			•						0.488
	estExt_Genewise1_v1.C_LG_X2901	hypothetical protein (169 aa)			•						0.476
	estExt_Genewise1_v1.C_LG_XII0506	hypothetical protein (155 aa)			•						0.466
	estExt_fgenesh4_pg.C_400233	hypothetical protein (208 aa)			•						0.465
	gw1.VIII.1120.1	hypothetical protein (94 aa)			•						0.458
	gw1.X.280.1	hypothetical protein (95 aa)			•						0.457
	gw1.226.9.1	annotation not avaliable (156 aa)			•						0.451
	gw1.IV.3225.1	hypothetical protein (87 aa)			•						0.435
	estExt_Genewise1_v1.C_LG_V0741	photosystem II protein Psb27 (175 aa)			•						0.428
	cemA	RecName- Full=Chloroplast envelope membrane protein;; May be involved in proton extrusion. Indi [...] (221 aa)			•						0.426

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	147
PF09991	290	DUF2232: Predicted membrane protein (DUF2232); Int	99.78
COG4241	314	Predicted membrane protein [Function unknown]	99.14
COG4241	314	Predicted membrane protein [Function unknown]	98.82
TIGR02357	183	thia_yuaJ probable proton-coupled thiamine transpo	91.48
PF13858	163	DUF4199: Protein of unknown function (DUF4199)	87.47
PF12822	172	DUF3816: Protein of unknown function (DUF3816); In	82.64
PF07155	169	ECF-ribofla_trS: ECF-type riboflavin transporter,	82.15
PF09515	177	Thia_YuaJ: Thiamine transporter protein (Thia_YuaJ	80.7

>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan

Probab=99.78  E-value=2.3e-17  Score=133.22  Aligned_cols=141  Identities=28%  Similarity=0.514  Sum_probs=120.7

Q ss_pred             CccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH--------HHHHHh---
Q 032082            1 MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIVV--------FASFFL---   69 (147)
Q Consensus         1 ~R~G~k~~~~~~~va~lll~~l~Gp~~~l~~~~~~G~lG~~lG~~~~~~~s~~~s~~~g~l~~--------~~~s~l---   69 (147)
                      .|||.|.+..+.++++++...+.||..++.+.+.+++.|+.+|+++|||+++..++..++.+.        .+....   
T Consensus        33 ~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  112 (290)
T PF09991_consen   33 LRYGLKYGLIALLAAAVLLALFGGPVSALFYLLFFGLPGLVLGYLLRKKRSWSRSILAGTLASLLGVLVFFLLLAYLSGI  112 (290)
T ss_pred             HHhChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            489999999998888888899999999999999999999999999999999999999888872        222222   


Q ss_pred             hHHHHHHHHHHHHHHHH---HHHcCCCC----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 032082           70 DFFNHITINIHASLTFI---FSAAGVNI----------VPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKAS  136 (147)
Q Consensus        70 N~~~~~~~~~~~~l~~~---~~~lG~~~----------~p~~~~i~~l~p~liv~~s~i~~~i~~~va~~iL~Rlg~~~i  136 (147)
                      |+.++..++++|..|+.   +++.|.++          ++..+.+..+.|+++++.++++++++|.+++.++||.|. +.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~P~~~~i~~~~~~~~~~~l~~~il~r~~~-~~  191 (290)
T PF09991_consen  113 NIFEQLIEQIQESIEQVLKIYSQSGLPQDQVDQLQKNLQQIAELIKRLFPALLIISALLMSLINYYLARRILRRLGI-PI  191 (290)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC
Confidence            88888888887777775   55667653          233778999999999999999999999999999999999 78


Q ss_pred             CCCcHH
Q 032082          137 LRLPRW  142 (147)
Q Consensus       137 p~~Pp~  142 (147)
                      |++||.
T Consensus       192 ~~~~~~  197 (290)
T PF09991_consen  192 PPLPPF  197 (290)
T ss_pred             CCCCch
Confidence            888875

>COG4241 Predicted membrane protein [Function unknown]

Probab=99.14  E-value=4.4e-11  Score=99.10  Aligned_cols=141  Identities=16%  Similarity=0.151  Sum_probs=113.7

Q ss_pred             CccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH--------HHHHHHh---
Q 032082            1 MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIV--------VFASFFL---   69 (147)
Q Consensus         1 ~R~G~k~~~~~~~va~lll~~l~Gp~~~l~~~~~~G~lG~~lG~~~~~~~s~~~s~~~g~l~--------~~~~s~l---   69 (147)
                      .|||.|.+.+ +..++..-..+.+|-......+++++-|+.+|...||..+.+..+..++.+        ++..|..   
T Consensus        47 ~k~g~k~~v~-~~~v~~~~~~~i~~~~l~~v~l~~~~p~vv~~~~~kr~e~~f~i~~~~s~~amiwi~~~yF~ls~~~~~  125 (314)
T COG4241          47 LKHGLKHGVE-VLIVAVGVVILIDSKALLLVALMFLIPGVVMGILLKRVEKAFAIMSGASTAAMIWIINFYFPLSIVIRI  125 (314)
T ss_pred             HHhccchhhh-eeeEeeeeeEEecchHHHHHHHHHhCchhhhhHHHHhccchhhHHhhHHHHHHHHHHHHHHHhhhhhcc
Confidence            3899999844 467777778888899999999999999999999999977777776555666        1223333   


Q ss_pred             -hHHHHHHHHHHHHHHH---HHHHcCCCC-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCC
Q 032082           70 -DFFNHITINIHASLTF---IFSAAGVNI-------VPSMNVIYVIFGTLVLLNSGFFVFLLHLLYSVFLTRLGMKASLR  138 (147)
Q Consensus        70 -N~~~~~~~~~~~~l~~---~~~~lG~~~-------~p~~~~i~~l~p~liv~~s~i~~~i~~~va~~iL~Rlg~~~ip~  138 (147)
                       |+..+..+.++++++.   ++.+.|.+.       +++.+..+++.|..+++.+.++++.++.++.+++||++. ++|.
T Consensus       126 inpv~~a~~~~Rqsl~~a~~~~i~~G~~~~~~l~iLees~~~~~~lgP~~ivi~~~i~a~~t~~vg~pilrR~~~-~v~~  204 (314)
T COG4241         126 INPVDDAVVYLRQSLNAAIKMAIAAGNNVDDALKILEESFTQQLYLGPGRIVIFGTIFALMTLLVGFPILRRLKI-KVPI  204 (314)
T ss_pred             cCCcHHHHHHHHhhhHHHHHHHHHccCChHHHHHHHHHHHhhHHhhCCceeehhHHHHHHHHHHHhHHHHHhCCc-cCCC
Confidence             9999999998887776   566788654       344555678899999999999999999999999999999 7999


Q ss_pred             CcHHH
Q 032082          139 LPRWL  143 (147)
Q Consensus       139 ~Pp~~  143 (147)
                      ++|-.
T Consensus       205 ~~p~~  209 (314)
T COG4241         205 FLPFR  209 (314)
T ss_pred             cccee
Confidence            98853

>COG4241 Predicted membrane protein [Function unknown]

Probab=98.82  E-value=8.2e-09  Score=85.71  Aligned_cols=145  Identities=13%  Similarity=0.054  Sum_probs=115.7

Q ss_pred             CccchhHHHHHHHHHH---------HHHHH----HhhhhHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH-----
Q 032082            1 MRWGVAAGRKTMVATA---------MLLLV----LSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIV-----   62 (147)
Q Consensus         1 ~R~G~k~~~~~~~va~---------lll~~----l~Gp~~~l~~~~~~G~lG~~lG~~~~~~~s~~~s~~~g~l~-----   62 (147)
                      +||+..+++..+..+|         +..++    .+||.+.+.+..+|+.++...|.+|.||.+|......+...     
T Consensus       136 ~Rqsl~~a~~~~i~~G~~~~~~l~iLees~~~~~~lgP~~ivi~~~i~a~~t~~vg~pilrR~~~~v~~~~p~~~~~f~~  215 (314)
T COG4241         136 LRQSLNAAIKMAIAAGNNVDDALKILEESFTQQLYLGPGRIVIFGTIFALMTLLVGFPILRRLKIKVPIFLPFRNWTFPN  215 (314)
T ss_pred             HHhhhHHHHHHHHHccCChHHHHHHHHHHHhhHHhhCCceeehhHHHHHHHHHHHhHHHHHhCCccCCCccceeeEeech
Confidence            4899999999999999         88899    99999999999999999999999999999999988877665     


Q ss_pred             ---HHHHHHh---hHHHHHHHHHHHHHHHHHHHcC--CCCcc--hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhh
Q 032082           63 ---VFASFFL---DFFNHITINIHASLTFIFSAAG--VNIVP--SMNVIYVIFGTLVLLN-SGFFVFLLHLLYSVFLTRL  131 (147)
Q Consensus        63 ---~~~~s~l---N~~~~~~~~~~~~l~~~~~~lG--~~~~p--~~~~i~~l~p~liv~~-s~i~~~i~~~va~~iL~Rl  131 (147)
                         ++-.+++   |+|++-..++.++.+|.++..+  .-..|  +.-.++.-+-.+.-.+ +++|.+.+|......+.|+
T Consensus       216 ~fl~~ylivv~~~~l~~~~~gqv~~~I~wnfl~vl~l~l~iqGlSvI~~y~~akgl~~av~vli~ilgiilt~ll~lvrl  295 (314)
T COG4241         216 SFLFWYLIVVCLELLWKYENGQVTYSIYWNFLMVLGLLLAIQGLSVIFFYLKAKGLPNAVIVLILILGIILTPLLYLVRL  295 (314)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhccccceeeehhhhccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence               2333333   9998888999999999766533  22234  3333344343344444 7888999999999999999


Q ss_pred             CCCCCCCCcHHHHhh
Q 032082          132 GMKASLRLPRWLEMA  146 (147)
Q Consensus       132 g~~~ip~~Pp~~~~~  146 (147)
                      +. .++.+|.|.++-
T Consensus       296 lg-~Id~~~~~rki~  309 (314)
T COG4241         296 LG-VIDLGFDLRKIM  309 (314)
T ss_pred             cC-CCCCCHHHHHHH
Confidence            99 799999998863

>TIGR02357 thia_yuaJ probable proton-coupled thiamine transporter YuaJ

Probab=91.48  E-value=1.6  Score=33.95  Aligned_cols=47  Identities=30%  Similarity=0.479  Sum_probs=32.4

Q ss_pred             CccchhHHHHHHHHHHHHHHHHhh------hhHHHH-HHHHHHHHHHHHHHHHHhC
Q 032082            1 MRWGVAAGRKTMVATAMLLLVLSG------PVKALA-YLLTHGVLGFSMGSLWRLG   49 (147)
Q Consensus         1 ~R~G~k~~~~~~~va~lll~~l~G------p~~~l~-~~~~~G~lG~~lG~~~~~~   49 (147)
                      .|||.|+|...-++.+++ .++.|      |+..+. +.+.|+.+|+ =|..+|++
T Consensus        44 ~~~Gp~~G~~~G~i~Gll-~~~~g~~~~~~p~q~~ldy~~a~~~iGl-aGl~~~~~   97 (183)
T TIGR02357        44 FRRGLKAGLVAGLIWGLL-KIILGTAYILHPVQVLLDYILAFMALGL-AGVFRIKK   97 (183)
T ss_pred             HHHccHHHHHHHHHHHHH-HHHhCCcccccHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            389999997765555544 44445      334444 7889999999 77777754

Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis. Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Steptococcus mutans and Streptoccus pyogenes), yuaJ is the only THI-regulated gene. Evidence from Bacillus cereus indicates thiamine uptake is coupled to proton translocation.

>PF13858 DUF4199: Protein of unknown function (DUF4199)

Probab=87.47  E-value=9.6  Score=28.12  Aligned_cols=22  Identities=18%  Similarity=0.498  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q 032082          109 VLLNSGFFVFLLHLLYSVFLTR  130 (147)
Q Consensus       109 iv~~s~i~~~i~~~va~~iL~R  130 (147)
                      .++.+++.-++.=++...++||
T Consensus       141 ~~~~~l~~G~i~sli~a~i~kk  162 (163)
T PF13858_consen  141 GFISNLIFGFIISLIIALILKK  162 (163)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC
Confidence            4555566666666666666665

>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []

Probab=82.64  E-value=17  Score=26.84  Aligned_cols=51  Identities=16%  Similarity=0.214  Sum_probs=33.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHhhh---hHH---HHHHHHHHHHHHHHHHHHH--hCCChH
Q 032082            3 WGVAAGRKTMVATAMLLLVLSGP---VKA---LAYLLTHGVLGFSMGSLWR--LGVDWG   53 (147)
Q Consensus         3 ~G~k~~~~~~~va~lll~~l~Gp---~~~---l~~~~~~G~lG~~lG~~~~--~~~s~~   53 (147)
                      -|.++|.....++.++=.++.+|   ...   +.+.+.-.+.|+.-|+++|  |++++.
T Consensus        42 ~Gp~~G~~~g~i~~il~~l~~~~~~~~~~~~~~~~~l~~~l~gl~~g~~~~~~~~~~~~  100 (172)
T PF12822_consen   42 LGPVWGALVGFISDILSFLIFGGGGPFIFPGFPGFTLPAALFGLIAGLLYKKLKKKSKK  100 (172)
T ss_dssp             S-HHHHHHHHHHHHHHHHHH-TTT-SSHH---HHHHHHHHHHHHHHHHHHT--SS-SHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccHH
Confidence            47888877766666655555433   232   7788888899999999994  445553

The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.

>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins

Probab=82.15  E-value=18  Score=26.85  Aligned_cols=50  Identities=22%  Similarity=0.339  Sum_probs=36.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHHHHhCCCh
Q 032082            3 WGVAAGRKTMVATAMLLLVLSGPVKALAY-LLTHGVLGFSMGSLWRLGVDW   52 (147)
Q Consensus         3 ~G~k~~~~~~~va~lll~~l~Gp~~~l~~-~~~~G~lG~~lG~~~~~~~s~   52 (147)
                      .|.+.|.....++.++-.++.|...-.+. .+..|+.|+..|+.++|++..
T Consensus        49 ~Gp~~G~ivg~ig~~l~dll~g~~~~~~~~~i~~~~~g~i~g~~~~~~~~~   99 (169)
T PF07155_consen   49 FGPKYGAIVGAIGDLLSDLLSGYGPWAPFTMISKGLMGFIAGLIFRKKKKK   99 (169)
T ss_pred             HChHHHHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHhccc
Confidence            47788866655666655666665445555 899999999999999997443

The function of this family is unknown.; GO: 0016020 membrane

>PF09515 Thia_YuaJ: Thiamine transporter protein (Thia_YuaJ); InterPro: IPR012651 Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis

Probab=80.70  E-value=5.6  Score=30.94  Aligned_cols=59  Identities=34%  Similarity=0.445  Sum_probs=33.5

Q ss_pred             CccchhHHHHHHHHHHHHHHHHhhh------hHH-HHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHH
Q 032082            1 MRWGVAAGRKTMVATAMLLLVLSGP------VKA-LAYLLTHGVLGFSMGSLWRL----------GVDWGLSIFLCTIV   62 (147)
Q Consensus         1 ~R~G~k~~~~~~~va~lll~~l~Gp------~~~-l~~~~~~G~lG~~lG~~~~~----------~~s~~~s~~~g~l~   62 (147)
                      .|||.|+|..+-++.++ +-++.||      .+. +=|.++|+.+|+  ...+++          .++...-+..|+++
T Consensus        40 ~r~G~~~G~~~G~l~Gl-l~~~~g~~~~~~p~q~llDY~laf~~lGl--aGlf~~~~~~~~~~~~~~~~~~~i~~g~~i  115 (177)
T PF09515_consen   40 FRRGWKAGILAGFLYGL-LQFLLGPAYIVHPVQVLLDYPLAFGALGL--AGLFAKPLQKTLKNNRYKKSYLNIILGTFI  115 (177)
T ss_dssp             HHH-HHHHHHHHHHHHH-HHHHTT-S--SSHHHHHHHHTHHHHHGGG--GGGG-----------SSS--HHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHH-HHHHhCCceehhHHHHHHHHHHHHHHHHH--HHhcccccchhhhhcccchhHHHHHHHHHH
Confidence            39999999888777776 5556776      222 235778888887  333333          23444555566655

Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Streptococcus mutans and Streptococcus pyogenes), YuaJ is the only THI-regulated gene. The thiamine transporter YuaJ, also known as ThiT, is a member of the energy coupling factor (ECF) transporters, a new class of transport proteins that shares some resemblance with ABC transporters [, ]. ; PDB: 3RLB_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	147
3p5n_A	189	RIBU, riboflavin uptake protein; transporter, alph	95.2
3rlb_A	192	THIT; S-component, ECF transporter, ABC transporte	94.59

>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}

Probab=95.20  E-value=0.53  Score=35.37  Aligned_cols=57  Identities=18%  Similarity=0.166  Sum_probs=39.8

Q ss_pred             ccchhHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHH
Q 032082            2 RWGVAAGRKTMVATAMLLLVLSG--PVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFL   58 (147)
Q Consensus         2 R~G~k~~~~~~~va~lll~~l~G--p~~~l~~~~~~G~lG~~lG~~~~~~~s~~~s~~~   58 (147)
                      ..|.++|.....+.+++-.++.|  |+-.+.-.+..+..|+.-|+.+||++++...+.+
T Consensus        57 ~~Gp~~g~~~~~l~~ll~~l~~g~~~~g~~~~~l~~~~~g~~~~~~y~k~~~~~~~~~~  115 (189)
T 3p5n_A           57 TFGPVAGIIVALVKNLLNYLFSMGDPVGPFANFLAGASFLLTAYAIYKNKRSTKSLITG  115 (189)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHHHSSSCSHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            46899997776666666655543  5444444566678888889999998887765543

>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}

Probab=94.59  E-value=0.02  Score=43.97  Aligned_cols=49  Identities=27%  Similarity=0.387  Sum_probs=36.3

Q ss_pred             ccchhHHHHHHHHHHHHHHHHhhh------hHH-HHHHHHHHHHHHHHHHHHHhCCCh
Q 032082            2 RWGVAAGRKTMVATAMLLLVLSGP------VKA-LAYLLTHGVLGFSMGSLWRLGVDW   52 (147)
Q Consensus         2 R~G~k~~~~~~~va~lll~~l~Gp------~~~-l~~~~~~G~lG~~lG~~~~~~~s~   52 (147)
                      |+|.|+|....++.+++ .++.|+      +.. +.+.+.|+.+|++ |+.++|+++.
T Consensus        60 ~~Gp~~G~~~g~i~gll-~~i~g~~~~~~p~q~lldy~laf~~~Gla-G~f~~~~~~~  115 (192)
T 3rlb_A           60 RRGLTAGLVGGLIWGIL-SMITGHAYILSLSQAFLEYLVAPVSLGIA-GLFRQKTAPL  115 (192)
T ss_dssp             HHCHHHHHHHHHHHHHH-HHHTTCSCCSSHHHHHHHHTHHHHHGGGG-GGGCCCSSSC
T ss_pred             HHChHHHHHHHHHHHHH-HHHhCCccccchHHHHHHHHHHHHHHHHH-Hhheeccccc
Confidence            89999997776665554 555653      322 5678899999998 9988887664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00