Citrus Sinensis ID: 032135

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
Protein Sequence
MLKSIVAGSCSVPLRLESKDNLNAGACFSDTTRSASVACCSSSSRTNAYNVPKLEPFSRTKLERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFELKDLEKELPKEDIEKLILQSGGVKSLIGCLHGISSIRKKKHWVPRE
Secondary Structure (PSIPRED)
cccccccccccccEEEccccccccccccccccccccEEEEEcccccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccEEEccccccccccccccccccccEEEEccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mlksivagscsvplrleskdnlnagacfsdttrsasvaccssssrtnaynvpklepfsrtkleravkepslieksENDLADYcstlegddsysCWRAYFELKDLEKELPKEDIEKLILQSGGVKSLIGCLHGISsirkkkhwvpre
Flexible Loop (DISEMBL)
MLKSIVAGSCSVPLRLESKDNLNAGACFSDTTRSASVACCssssrtnaynvpklepfsrtkleravkepslieksendLADYCSTLEGDDSYSCWRAYFELKDLEKELPKEDIEKLILQSGGVKSLIGCLHgissirkkkhwvpre
Low Complexity Region (SEG)
MLKSIVAGSCSVPLRLESKDNLNAGACFSDTTRsasvaccssssRTNAYNVPKLEPFSRTKLERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFelkdlekelpkedieklilQSGGVKSLIGCLHGISSIRKKKHWVPRE
Disordered region (IsUnstruct)
************************GACF**************************************************LADYCSTLEGDDSYSCWRAYFELKDLEKELPKEDIEKLILQSGGVKSLIGCLHGISSIRK********
Disordered Region (DISOPRED)
********SCSVPLRLESKD************************************FSRTKLE**VK***LIEKSENDLADYCSTLEGDDSYSCWRAYFELKDLE*********KLILQSGGVKSLIGCLHGISS***********
Disordered Region (DISEMBL)
MLKSIVAGSCSVPLRLESKDNLNAGACFSDTTRSASVACCSSSSRTNAYNVPKLEPFSRTKLERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFELKDLEKELPKEDIEKLILQSGGVKSLIGCLHGISSI**********
Disordered Region (DISPRO)
*LKSIVAGSCSVPLRLESK*************************RTNAYNVPKLEPFSRTKLERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFELKDLEKELPKEDIEKLILQSGGVKSLIGCLHGISSIRKKK******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLKSIVAGSCSVPLRLESKDNLNAGACFSDTTRSASVACCSSSSRTNAYNVPKLEPFSRTKLERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFELKDLEKELPKEDIEKLILQSGGVKSLIGCLHGISSIRKKKHWVPRE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
255556231	326	conserved hypothetical protein [Ricinus	0.938	0.420	0.671	9e-42
224103497	204	predicted protein [Populus trichocarpa]	0.917	0.656	0.638	1e-41
351720857	200	uncharacterized protein LOC100305614 [Gl	0.897	0.655	0.628	5e-39
351728107	200	uncharacterized protein LOC100527613 [Gl	0.904	0.66	0.6	1e-37
449471271	209	PREDICTED: uncharacterized protein LOC10	0.616	0.430	0.777	2e-36
225428657	194	PREDICTED: uncharacterized protein LOC10	0.726	0.546	0.688	5e-36
297836210	197	hypothetical protein ARALYDRAFT_319530 [	0.890	0.659	0.572	6e-35
18397956	203	maternal effect embryo arrest 14 protein	0.890	0.640	0.550	5e-34
188572010	235	unknown protein [Ophiopogon japonicus]	0.760	0.472	0.589	4e-33
449455220	215	PREDICTED: uncharacterized protein LOC10	0.616	0.418	0.708	1e-32

>gi|255556231|ref|XP_002519150.1| conserved hypothetical protein [Ricinus communis] gi|223541813|gb|EEF43361.1| conserved hypothetical protein [Ricinus communis]

 Score =  174 bits (442), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 94/140 (67%), Positives = 109/140 (77%), Gaps = 3/140 (2%)

Query: 1   MLKSIVAGSCSVPLRLESKDNLNAGACFSDTTRSASVACCSSSSRTNAYNVPKLEPFSRT 60
           MLKSI+  S S PL  E +   N+  C    +   S +  SSSS  ++  +PKLEPFSRT
Sbjct: 120 MLKSILLQSPSSPLLFEHR---NSKTCTRIVSTITSSSSSSSSSSRSSSYIPKLEPFSRT 176

Query: 61  KLERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFELKDLEKELPKEDIEKLILQS 120
           KLERAVK P LIEKSEN+LADYCSTL+GDDSYSCWRAYFELKDLE+E PKED+EKLILQ+
Sbjct: 177 KLERAVKAPPLIEKSENELADYCSTLDGDDSYSCWRAYFELKDLERESPKEDVEKLILQA 236

Query: 121 GGVKSLIGCLHGISSIRKKK 140
           GGVKSLIGCLHGISS+ K +
Sbjct: 237 GGVKSLIGCLHGISSMHKGR 256

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103497|ref|XP_002313079.1| predicted protein [Populus trichocarpa] gi|118483253|gb|ABK93529.1| unknown [Populus trichocarpa] gi|222849487|gb|EEE87034.1| predicted protein [Populus trichocarpa]

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 90/141 (63%), Positives = 109/141 (77%), Gaps = 7/141 (4%)

Query: 1   MLKSIVAGSCSVPLRLESKD-NLNAGACFSDTTRSASVACCSSSSRTNAYNVPKLEPFSR 59
           M+KS++  S   PL +E++D N ++    S T        CSSS   +A N+PKL+PFSR
Sbjct: 1   MIKSLLLRSFPSPLLIEARDVNRSSKRVVSSTI------TCSSSRSDDALNIPKLDPFSR 54

Query: 60  TKLERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFELKDLEKELPKEDIEKLILQ 119
           TK+ERAVK   LI+KSEN+LADYCSTLEGDDSYSCWRAYFELKDLE+E PKED+ +LI+Q
Sbjct: 55  TKIERAVKSLPLIQKSENELADYCSTLEGDDSYSCWRAYFELKDLERESPKEDVVRLIIQ 114

Query: 120 SGGVKSLIGCLHGISSIRKKK 140
           SGGVKSLIGCLHGISS+ K K
Sbjct: 115 SGGVKSLIGCLHGISSMNKGK 135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720857|ref|NP_001237958.1| uncharacterized protein LOC100305614 [Glycine max] gi|255626091|gb|ACU13390.1| unknown [Glycine max]

 Score =  165 bits (418), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 88/140 (62%), Positives = 103/140 (73%), Gaps = 9/140 (6%)

Query: 2   LKSIVAGSCSVPLRLESKDNLNAGACFSDTTRSAS-VACCSSSSRTNAYNVPKLEPFSRT 60
           +K+ +   CS PL L++  N       S T R AS V CCSS    N   +PKLEPFSRT
Sbjct: 1   MKATLLRPCSGPLILDTHSNRT-----SSTMRHASTVVCCSSK---NQPYIPKLEPFSRT 52

Query: 61  KLERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFELKDLEKELPKEDIEKLILQS 120
           K ERAVK+P LIEKSE ++ DYCSTLEGD SYSCW+AYFELKDLEKE P+ DIE+LIL++
Sbjct: 53  KFERAVKDPPLIEKSEKEILDYCSTLEGDQSYSCWQAYFELKDLEKESPRADIERLILET 112

Query: 121 GGVKSLIGCLHGISSIRKKK 140
           GGVKSLIGCLHGIS + K K
Sbjct: 113 GGVKSLIGCLHGISIMHKVK 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351728107|ref|NP_001238719.1| uncharacterized protein LOC100527613 [Glycine max] gi|255632776|gb|ACU16741.1| unknown [Glycine max]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 84/140 (60%), Positives = 102/140 (72%), Gaps = 8/140 (5%)

Query: 1   MLKSIVAGSCSVPLRLESKDNLNAGACFSDTTRSASVACCSSSSRTNAYNVPKLEPFSRT 60
           M  +++    S PL L++  N  +      T  +++V CCSS  R   Y +PKLEPFSRT
Sbjct: 1   MKATLLCPCSSAPLILDTHSNRTSA-----TRHASTVVCCSS--RNQPY-IPKLEPFSRT 52

Query: 61  KLERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFELKDLEKELPKEDIEKLILQS 120
           K ERAVK+P LIEKSE ++ DYCSTLEGD SYSCW+AYFELKDLEKE PK DIE+LIL++
Sbjct: 53  KFERAVKDPPLIEKSEREILDYCSTLEGDQSYSCWQAYFELKDLEKESPKADIERLILET 112

Query: 121 GGVKSLIGCLHGISSIRKKK 140
           G VKSLIGCLHGIS + K K
Sbjct: 113 GSVKSLIGCLHGISIMHKLK 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449471271|ref|XP_004153261.1| PREDICTED: uncharacterized protein LOC101222441 [Cucumis sativus]

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/90 (77%), Positives = 87/90 (96%)

Query: 51  VPKLEPFSRTKLERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFELKDLEKELPK 110
           +PKL+PFSR+KL+RA+KEP LI+KSEN+LADYCSTLEGDDSYSCW+AYFEL+DLEKE PK
Sbjct: 49  IPKLQPFSRSKLDRAIKEPPLIQKSENELADYCSTLEGDDSYSCWKAYFELQDLEKESPK 108

Query: 111 EDIEKLILQSGGVKSLIGCLHGISSIRKKK 140
           +++EKLILQ+GGVKSLIGC+HGI++I+K K
Sbjct: 109 QEVEKLILQAGGVKSLIGCVHGITAIQKSK 138

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428657|ref|XP_002284884.1| PREDICTED: uncharacterized protein LOC100267586 [Vitis vinifera] gi|297741365|emb|CBI32496.3| unnamed protein product [Vitis vinifera]

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 75/109 (68%), Positives = 91/109 (83%), Gaps = 3/109 (2%)

Query: 32  TRSASVACCSSSSRTNAYNVPKLEPFSRTKLERAVKEPSLIEKSENDLADYCSTLEGDDS 91
           +RS++V C   SSR +   +PKLEPFSR+KL+R +KEP LI+K EN+L DYCSTLEGDDS
Sbjct: 19  SRSSTVCC---SSRNSQPYIPKLEPFSRSKLDRVLKEPPLIQKCENELMDYCSTLEGDDS 75

Query: 92  YSCWRAYFELKDLEKELPKEDIEKLILQSGGVKSLIGCLHGISSIRKKK 140
           YSCW+AYFELKDLEKE PKED+EKLILQ GG+KSLIGCLH +++  K K
Sbjct: 76  YSCWQAYFELKDLEKESPKEDVEKLILQVGGLKSLIGCLHHVATFSKGK 124

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836210|ref|XP_002885987.1| hypothetical protein ARALYDRAFT_319530 [Arabidopsis lyrata subsp. lyrata] gi|297331827|gb|EFH62246.1| hypothetical protein ARALYDRAFT_319530 [Arabidopsis lyrata subsp. lyrata]

 Score =  152 bits (383), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 79/138 (57%), Positives = 99/138 (71%), Gaps = 8/138 (5%)

Query: 1   MLKSIVAGSCSVPLRLESKDNLNAGACFSDTTRSASVACCSSSSRTNAYNVPKLEPFSRT 60
           M+KS+   S  +P+  E  D   A   F    RS  V  CSS+      +VPKLE FSR 
Sbjct: 1   MIKSVTLRSFHLPI--EFNDTKFAAPSFP-PARSFPVVRCSSTR-----DVPKLELFSRG 52

Query: 61  KLERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFELKDLEKELPKEDIEKLILQS 120
           K +R +++P LIEK+E +L+DYCSTLEGDDSYSCWRAYFELKDLE+E PK ++E LILQ+
Sbjct: 53  KFDRILQDPPLIEKAETELSDYCSTLEGDDSYSCWRAYFELKDLEREKPKVEVENLILQT 112

Query: 121 GGVKSLIGCLHGISSIRK 138
           GGVKSLIGCLHG++S+ K
Sbjct: 113 GGVKSLIGCLHGVASMEK 130

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397956|ref|NP_565383.1| maternal effect embryo arrest 14 protein [Arabidopsis thaliana] gi|11692922|gb|AAG40064.1|AF324713_1 At2g15890 [Arabidopsis thaliana] gi|12642940|gb|AAK00412.1|AF339730_1 unknown protein [Arabidopsis thaliana] gi|5306244|gb|AAD41977.1| expressed protein [Arabidopsis thaliana] gi|17473578|gb|AAL38262.1| unknown protein [Arabidopsis thaliana] gi|21592568|gb|AAM64517.1| unknown [Arabidopsis thaliana] gi|30725564|gb|AAP37804.1| At2g15890 [Arabidopsis thaliana] gi|330251350|gb|AEC06444.1| maternal effect embryo arrest 14 protein [Arabidopsis thaliana]

 Score =  149 bits (375), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 76/138 (55%), Positives = 99/138 (71%), Gaps = 8/138 (5%)

Query: 1   MLKSIVAGSCSVPLRLESKDNLNAGACFSDTTRSASVACCSSSSRTNAYNVPKLEPFSRT 60
           M+KS+   S  +P+         +  CF    RS  V  CSS+      +VPKLE FSR 
Sbjct: 1   MIKSVTLRSFHLPIEFNDT-KFVSRPCF--LARSFPVVRCSSTR-----DVPKLELFSRG 52

Query: 61  KLERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFELKDLEKELPKEDIEKLILQS 120
           K +R +++P LIEK+E++L+DYCSTLEGDDSYSCWRAYFELKDLE+E PK ++E LILQ+
Sbjct: 53  KFDRILQDPPLIEKAESELSDYCSTLEGDDSYSCWRAYFELKDLEREKPKVEVENLILQT 112

Query: 121 GGVKSLIGCLHGISSIRK 138
           GG+KSLIGCLHG++S+ K
Sbjct: 113 GGLKSLIGCLHGVASMEK 130

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|188572010|gb|ACD64979.1| unknown protein [Ophiopogon japonicus]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 66/112 (58%), Positives = 91/112 (81%), Gaps = 1/112 (0%)

Query: 28  FSDTTRSASVACCSSSSRTNAYNVPKLEPFSRTKLERAVKEPSLIEKSENDLADYCSTLE 87
           F D  RS S     ++ R++A ++PKLEPFSR++++R ++EPS ++K ENDL +YCS LE
Sbjct: 22  FVDVGRSRSARFVCNAQRSSA-SIPKLEPFSRSRIDRRMQEPSFLKKCENDLTEYCSILE 80

Query: 88  GDDSYSCWRAYFELKDLEKELPKEDIEKLILQSGGVKSLIGCLHGISSIRKK 139
           GD+SYSCWRAYFELKDLEKE+PK+D+EK + Q+GG KSLI CLHG++++ KK
Sbjct: 81  GDESYSCWRAYFELKDLEKEMPKDDVEKFVRQTGGRKSLIECLHGLTALEKK 132

Source: Ophiopogon japonicus

Species: Ophiopogon japonicus

Genus: Ophiopogon

Family: Asparagaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455220|ref|XP_004145351.1| PREDICTED: uncharacterized protein LOC101213926 [Cucumis sativus]

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/96 (70%), Positives = 84/96 (87%), Gaps = 6/96 (6%)

Query: 51  VPKLEPFSRTKLERAVKEPSLIEKSENDLA------DYCSTLEGDDSYSCWRAYFELKDL 104
           +PKL+PFSR+KL+RA+KEP LI+KSEN         DYCSTLEGDDSYSCW+AYFEL+DL
Sbjct: 49  IPKLQPFSRSKLDRAIKEPPLIQKSENYYYYYFCSCDYCSTLEGDDSYSCWKAYFELQDL 108

Query: 105 EKELPKEDIEKLILQSGGVKSLIGCLHGISSIRKKK 140
           EKE PK+++EKLILQ+GGVKSLIGC+HGI++I+K K
Sbjct: 109 EKESPKQEVEKLILQAGGVKSLIGCVHGITAIQKSK 144

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
TAIR|locus:2044556	203	MEE14 "AT2G15890" [Arabidopsis	0.609	0.438	0.561	3.8e-23

TAIR|locus:2044556 MEE14 "AT2G15890" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 50/89 (56%), Positives = 64/89 (71%)

Query:    50 NVPKLEPFSRTKLERAVKEPSLIEKSENDLADYCSTLEGDDSYSCWRAYFXXXXXXXXXX 109
             +VPKLE FSR K +R +++P LIEK+E++L+DYCSTLEGDDSYSCWRAYF          
Sbjct:    42 DVPKLELFSRGKFDRILQDPPLIEKAESELSDYCSTLEGDDSYSCWRAYFELKDLEREKP 101

Query:   110 XXXXXXXXXQSGGVKSLIGCLHGISSIRK 138
                      Q+GG+KSLIGCLHG++S+ K
Sbjct:   102 KVEVENLILQTGGLKSLIGCLHGVASMEK 130


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      146       116   0.00091  102 3  11 22  0.37    31
                                                     29  0.45    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  567 (60 KB)
  Total size of DFA:  129 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.93u 0.14s 10.07t   Elapsed:  00:00:01
  Total cpu time:  9.93u 0.14s 10.07t   Elapsed:  00:00:01
  Start:  Fri May 10 17:13:51 2013   End:  Fri May 10 17:13:52 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00090586 SubName- Full=Putative uncharacterized protein; (204 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00