Citrus Sinensis ID: 032156

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
Protein Sequence
MAAAAFASSSPVVGLGSSSLSSPKRTALGSSFVKSPVAARNPLRVAGACGGKVTCFERDWLRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWLWLVTWHFGLFLCLTFGQIGFKGRTEDYFSK
Secondary Structure (PSIPRED)
cccccccccccEEccccccccccccccccccccccccccccHHHHcccccccEEEEcccHHcccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccEcccccccccccccccccccccccccccccHHHHHcccccEEEEcccHHHHccccEEEEEHHHccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcHccccccccccccc
Coil and Loop (DISEMBL)
maaaafassspvvglgssslsspkrtalgssfvkspvaarnplrvagacggkvtcferDWLRTDLNVIGFGligwlapssipaingksltgLFFESIgtelahfptpppltsqFWLWLVTWHFGLFLCltfgqigfkgrtedyfsk
Flexible Loop (DISEMBL)
maaaafassspvvglgssslsspkRTALGssfvkspvaarnplrvagacggkVTCFERDWLRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWLWLVTWHFGLFLCLTFGQIGFKGRTEDYFSK
Low Complexity Region (SEG)
MaaaafassspvvglgssslsspKRTALGSSFVKSPVAARNPLRVAGACGGKVTCFERDWLRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWLWLVTWHFGLFLCLTFGQIGFKGRTEDYFSK
Disordered region (IsUnstruct)
*************************************AARNPLRVAGACGGKVTCFERDWLRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWLWLVTWHFGLFLCLTFGQIGFKGR*******
Disordered Region (DISOPRED)
*************GLGS*********************************GKVTCFERDWLRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWLWLVTWHFGLFLCLTFGQIGFKGR*******
Disordered Region (DISEMBL)
***************************LGSSFVKSPVAARNPLRVAGACGGKVTCFERDWLRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWLWLVTWHFGLFLCLTFGQIGFKGRTEDYFSK
Disordered Region (DISPRO)
***********************************P*AARNPLRVAGACGGKVTCFERDWLRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWLWLVTWHFGLFLCLTFGQIGFKGRTE*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAAAFASSSPVVGLGSSSLSSPKRTALGSSFVKSPVAARNPLRVAGACGGKVTCFERDWLRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWLWLVTWHFGLFLCLTFGQIGFKGRTEDYFSK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
255565725	143	conserved hypothetical protein [Ricinus	0.972	0.993	0.830	6e-62
224104879	149	predicted protein [Populus trichocarpa]	0.972	0.953	0.810	2e-57
18390888	140	photosystem I subunit O [Arabidopsis tha	0.952	0.992	0.781	2e-57
22531014	140	expressed protein [Arabidopsis thaliana]	0.952	0.992	0.774	7e-57
312281545	142	unnamed protein product [Thellungiella h	0.965	0.992	0.777	2e-56
297849148	140	hypothetical protein ARALYDRAFT_470899 [	0.952	0.992	0.767	2e-56
224131784	151	predicted protein [Populus trichocarpa]	0.986	0.953	0.8	2e-55
147858299	144	hypothetical protein VITISV_019056 [Viti	0.945	0.958	0.797	1e-54
225464874	148	PREDICTED: uncharacterized protein LOC10	0.972	0.959	0.775	2e-54
449443468	146	PREDICTED: uncharacterized protein LOC10	0.979	0.979	0.787	3e-54

>gi|255565725|ref|XP_002523852.1| conserved hypothetical protein [Ricinus communis] gi|223536940|gb|EEF38578.1| conserved hypothetical protein [Ricinus communis]

 Score =  241 bits (615), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 118/142 (83%), Positives = 127/142 (89%)

Query: 3   AAAFASSSPVVGLGSSSLSSPKRTALGSSFVKSPVAARNPLRVAGACGGKVTCFERDWLR 62
           AA FA+SS V+GL SSSLSSPK+  LGS FVKSPV ARNPLR  GA GGK  CFER+WLR
Sbjct: 2   AATFATSSTVIGLCSSSLSSPKKICLGSGFVKSPVPARNPLRQTGANGGKFVCFERNWLR 61

Query: 63  TDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWLWLVTWH 122
            DLNVIGFGLIGWLAPS+IPAI+GKSLTGLFFESIG+ELAHFP+PP LTSQFWLWL+TWH
Sbjct: 62  KDLNVIGFGLIGWLAPSTIPAIDGKSLTGLFFESIGSELAHFPSPPALTSQFWLWLITWH 121

Query: 123 FGLFLCLTFGQIGFKGRTEDYF 144
            GLFLCLTFGQIGFKGRTEDYF
Sbjct: 122 LGLFLCLTFGQIGFKGRTEDYF 143

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104879|ref|XP_002313603.1| predicted protein [Populus trichocarpa] gi|222850011|gb|EEE87558.1| predicted protein [Populus trichocarpa]

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 120/148 (81%), Positives = 127/148 (85%), Gaps = 6/148 (4%)

Query: 3   AAAFASSSPVVGLGSSSLSS------PKRTALGSSFVKSPVAARNPLRVAGACGGKVTCF 56
           AA FASSS V GLGSSSLSS      PK+  L S FVKSPVAAR+PLR+AG  GGK  CF
Sbjct: 2   AATFASSSAVTGLGSSSLSSPSRASSPKKICLSSGFVKSPVAARSPLRLAGTHGGKFMCF 61

Query: 57  ERDWLRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWL 116
           ERDWLR DLNVIGFGLIGWLAPSSIPAI GKSL+GLFFESIGTELAHFPTPPPLTSQFWL
Sbjct: 62  ERDWLRKDLNVIGFGLIGWLAPSSIPAIGGKSLSGLFFESIGTELAHFPTPPPLTSQFWL 121

Query: 117 WLVTWHFGLFLCLTFGQIGFKGRTEDYF 144
           WLVTWH GLF+CLT GQIGFKGRT++YF
Sbjct: 122 WLVTWHLGLFICLTLGQIGFKGRTDEYF 149

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390888|ref|NP_563815.1| photosystem I subunit O [Arabidopsis thaliana] gi|15293053|gb|AAK93637.1| unknown protein [Arabidopsis thaliana] gi|20259137|gb|AAM14284.1| unknown protein [Arabidopsis thaliana] gi|21592969|gb|AAM64918.1| putative 16kDa membrane protein [Arabidopsis thaliana] gi|21702253|emb|CAD37939.1| photosystem I subunit O [Arabidopsis thaliana] gi|332190162|gb|AEE28283.1| photosystem I subunit O [Arabidopsis thaliana]

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 111/142 (78%), Positives = 125/142 (88%), Gaps = 3/142 (2%)

Query: 3   AAAFASSSPVVGLGSSSLSSPKRTALGSSFVKSPVAARNPLRVAGACGGKVTCFERDWLR 62
           AA FA+ S V+GLG SS+++       SSF+K  ++A+NPLR+AGA GG+VTCFER+WLR
Sbjct: 2   AATFATPSTVIGLGGSSITT---KPFSSSFLKPTLSAKNPLRLAGASGGRVTCFERNWLR 58

Query: 63  TDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWLWLVTWH 122
            DLNV+GFGLIGWLAPSSIPAINGKSLTGLFF+SIGTELAHFPTPP LTSQFWLWLVTWH
Sbjct: 59  RDLNVVGFGLIGWLAPSSIPAINGKSLTGLFFDSIGTELAHFPTPPALTSQFWLWLVTWH 118

Query: 123 FGLFLCLTFGQIGFKGRTEDYF 144
            GLFLCLTFGQIGFKGRTEDYF
Sbjct: 119 LGLFLCLTFGQIGFKGRTEDYF 140

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22531014|gb|AAM97011.1| expressed protein [Arabidopsis thaliana] gi|23197966|gb|AAN15510.1| expressed protein [Arabidopsis thaliana]

 Score =  224 bits (572), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 110/142 (77%), Positives = 124/142 (87%), Gaps = 3/142 (2%)

Query: 3   AAAFASSSPVVGLGSSSLSSPKRTALGSSFVKSPVAARNPLRVAGACGGKVTCFERDWLR 62
            A FA+ S V+GLG SS+++       SSF+K  ++A+NPLR+AGA GG+VTCFER+WLR
Sbjct: 2   VATFATPSTVIGLGGSSITT---KPFSSSFLKPTLSAKNPLRLAGASGGRVTCFERNWLR 58

Query: 63  TDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWLWLVTWH 122
            DLNV+GFGLIGWLAPSSIPAINGKSLTGLFF+SIGTELAHFPTPP LTSQFWLWLVTWH
Sbjct: 59  RDLNVVGFGLIGWLAPSSIPAINGKSLTGLFFDSIGTELAHFPTPPALTSQFWLWLVTWH 118

Query: 123 FGLFLCLTFGQIGFKGRTEDYF 144
            GLFLCLTFGQIGFKGRTEDYF
Sbjct: 119 LGLFLCLTFGQIGFKGRTEDYF 140

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281545|dbj|BAJ33638.1| unnamed protein product [Thellungiella halophila]

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 112/144 (77%), Positives = 124/144 (86%), Gaps = 3/144 (2%)

Query: 3   AAAFASSSPVVGLGSSSLSSPKRTALGSSFVKSPVAARNPLRVAGACGGKVTCFERDWLR 62
           AA F + S V+GLG SS+S P+     SSF+K  + A+NPLR+AGA GG+ TCFER+WLR
Sbjct: 2   AATFTTPSTVIGLGGSSVS-PR--PFSSSFLKPTLRAKNPLRLAGASGGRFTCFERNWLR 58

Query: 63  TDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWLWLVTWH 122
            DLNV+GFGLIGWLAPSSIPAINGKSLTGLFF+SIGTELAHFPTPP LTSQFWLWLVTWH
Sbjct: 59  RDLNVVGFGLIGWLAPSSIPAINGKSLTGLFFDSIGTELAHFPTPPALTSQFWLWLVTWH 118

Query: 123 FGLFLCLTFGQIGFKGRTEDYFSK 146
            GLFLCLTFGQIGFKGRTEDYF K
Sbjct: 119 LGLFLCLTFGQIGFKGRTEDYFQK 142

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849148|ref|XP_002892455.1| hypothetical protein ARALYDRAFT_470899 [Arabidopsis lyrata subsp. lyrata] gi|297338297|gb|EFH68714.1| hypothetical protein ARALYDRAFT_470899 [Arabidopsis lyrata subsp. lyrata]

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 109/142 (76%), Positives = 124/142 (87%), Gaps = 3/142 (2%)

Query: 3   AAAFASSSPVVGLGSSSLSSPKRTALGSSFVKSPVAARNPLRVAGACGGKVTCFERDWLR 62
           AA FA+ S V+GLG SS+++       S F+K  ++A+NPLR+AGA GG+VTCFER+WLR
Sbjct: 2   AATFATPSTVIGLGGSSITT---KPFSSPFLKPTLSAKNPLRLAGASGGRVTCFERNWLR 58

Query: 63  TDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWLWLVTWH 122
            DLNV+GFGLIGWLAPSSIPAINGKSLTGLFF+SIGTELAHFPTPP +TSQFWLWLVTWH
Sbjct: 59  RDLNVVGFGLIGWLAPSSIPAINGKSLTGLFFDSIGTELAHFPTPPAVTSQFWLWLVTWH 118

Query: 123 FGLFLCLTFGQIGFKGRTEDYF 144
            GLFLCLTFGQIGFKGRTEDYF
Sbjct: 119 LGLFLCLTFGQIGFKGRTEDYF 140

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131784|ref|XP_002328107.1| predicted protein [Populus trichocarpa] gi|222837622|gb|EEE75987.1| predicted protein [Populus trichocarpa]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 120/150 (80%), Positives = 125/150 (83%), Gaps = 6/150 (4%)

Query: 3   AAAFASSSPVVGLGSSSLSS------PKRTALGSSFVKSPVAARNPLRVAGACGGKVTCF 56
           AA FAS S VVGLGS SLSS      PK+  L S FVKSPV ARNPL +AG  GGK  CF
Sbjct: 2   AATFASPSAVVGLGSGSLSSPSRISSPKKICLSSGFVKSPVTARNPLGLAGTGGGKFMCF 61

Query: 57  ERDWLRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWL 116
           + DWLR DLNVIGFGLIGWLAPSS+PAI GKSLTGLFFESIGTELAHFPTPPPLTSQFWL
Sbjct: 62  QGDWLRKDLNVIGFGLIGWLAPSSVPAIGGKSLTGLFFESIGTELAHFPTPPPLTSQFWL 121

Query: 117 WLVTWHFGLFLCLTFGQIGFKGRTEDYFSK 146
           WLVTWH GLF+CLTFGQIGFKGRTEDYF K
Sbjct: 122 WLVTWHLGLFICLTFGQIGFKGRTEDYFQK 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858299|emb|CAN83522.1| hypothetical protein VITISV_019056 [Vitis vinifera]

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 114/143 (79%), Positives = 121/143 (84%), Gaps = 5/143 (3%)

Query: 7   ASSSPVVGLGSSSLSSP-----KRTALGSSFVKSPVAARNPLRVAGACGGKVTCFERDWL 61
           A++S V+GLGSSSLS       KRT L S FVK+PVA RNPLR A ACGGK TCFERDWL
Sbjct: 2   AAASTVIGLGSSSLSPARSSSSKRTHLASGFVKAPVAPRNPLRQAKACGGKFTCFERDWL 61

Query: 62  RTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWLWLVTW 121
           RTDLNVIGFGLI WLAPSSIPAI+G SLTGLFF SIGTEL+HFPT P LTS FWLW+VTW
Sbjct: 62  RTDLNVIGFGLIAWLAPSSIPAIDGNSLTGLFFSSIGTELSHFPTGPALTSPFWLWMVTW 121

Query: 122 HFGLFLCLTFGQIGFKGRTEDYF 144
           H GLFLCLTFGQIGFKGRTEDYF
Sbjct: 122 HLGLFLCLTFGQIGFKGRTEDYF 144

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464874|ref|XP_002273037.1| PREDICTED: uncharacterized protein LOC100244962 isoform 1 [Vitis vinifera] gi|359479489|ref|XP_003632280.1| PREDICTED: uncharacterized protein LOC100244962 isoform 2 [Vitis vinifera] gi|296084873|emb|CBI28282.3| unnamed protein product [Vitis vinifera]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 114/147 (77%), Positives = 121/147 (82%), Gaps = 5/147 (3%)

Query: 3   AAAFASSSPVVGLGSSSLSSP-----KRTALGSSFVKSPVAARNPLRVAGACGGKVTCFE 57
           A   A++S V+GLGSSSLS       KRT L S FVK+PVA RNPL  A ACGGK TCFE
Sbjct: 2   ATTMAAASTVIGLGSSSLSPTRSSSSKRTHLASGFVKAPVAPRNPLMQAKACGGKFTCFE 61

Query: 58  RDWLRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWLW 117
           RDWLRTDLNVIGFGLI WLAPSSIPAI+G SLTGLFF SIGTEL+HFPT P LTS FWLW
Sbjct: 62  RDWLRTDLNVIGFGLIAWLAPSSIPAIDGNSLTGLFFSSIGTELSHFPTGPALTSPFWLW 121

Query: 118 LVTWHFGLFLCLTFGQIGFKGRTEDYF 144
           +VTWH GLFLCLTFGQIGFKGRTEDYF
Sbjct: 122 MVTWHLGLFLCLTFGQIGFKGRTEDYF 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443468|ref|XP_004139499.1| PREDICTED: uncharacterized protein LOC101209111 [Cucumis sativus]

 Score =  216 bits (549), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 115/146 (78%), Positives = 125/146 (85%), Gaps = 3/146 (2%)

Query: 3   AAAFASSSPVVGLGSSSLSSPKRTALG--SSFVKSPVAARNPLRVAGACGGKVTCFERDW 60
           A AFA+SS V GLG++SLSSP   +    S F+K PVAARNPL VAGA GGK TCFERDW
Sbjct: 2   ATAFATSS-VAGLGTASLSSPSSRSPRLVSGFIKPPVAARNPLSVAGASGGKFTCFERDW 60

Query: 61  LRTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWLWLVT 120
           LR DLNVIGFGLIGW+APSSIP I+GKSLTGLFFESIG ELAHFP+PP LTSQFWLWL+T
Sbjct: 61  LRRDLNVIGFGLIGWIAPSSIPVISGKSLTGLFFESIGAELAHFPSPPALTSQFWLWLIT 120

Query: 121 WHFGLFLCLTFGQIGFKGRTEDYFSK 146
           WH GLF+ LTFGQIGFKGRTEDYFSK
Sbjct: 121 WHLGLFITLTFGQIGFKGRTEDYFSK 146

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
TAIR|locus:2201836	140	PSAO "AT1G08380" [Arabidopsis	0.787	0.821	0.869	2.6e-54

TAIR|locus:2201836 PSAO "AT1G08380" [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 100/115 (86%), Positives = 109/115 (94%)

Query:    30 SSFVKSPVAARNPLRVAGACGGKVTCFERDWLRTDLNVIGFGLIGWLAPSSIPAINGKSL 89
             SSF+K  ++A+NPLR+AGA GG+VTCFER+WLR DLNV+GFGLIGWLAPSSIPAINGKSL
Sbjct:    26 SSFLKPTLSAKNPLRLAGASGGRVTCFERNWLRRDLNVVGFGLIGWLAPSSIPAINGKSL 85

Query:    90 TGLFFESIGTELAHFPTPPPLTSQFWLWLVTWHFGLFLCLTFGQIGFKGRTEDYF 144
             TGLFF+SIGTELAHFPTPP LTSQFWLWLVTWH GLFLCLTFGQIGFKGRTEDYF
Sbjct:    86 TGLFFDSIGTELAHFPTPPALTSQFWLWLVTWHLGLFLCLTFGQIGFKGRTEDYF 140


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.142   0.481    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      146       124   0.00091  102 3  11 22  0.47    30
                                                     29  0.39    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  146 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.28u 0.17s 13.45t   Elapsed:  00:00:01
  Total cpu time:  13.28u 0.17s 13.45t   Elapsed:  00:00:01
  Start:  Fri May 10 18:06:02 2013   End:  Fri May 10 18:06:03 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009522 "photosystem I" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009768 "photosynthesis, light harvesting in photosystem I" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0001007701 photosystem I reaction center protein PsaO (150 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	146
PLN00046	141	PLN00046, PLN00046, photosystem I reaction center	4e-72
TIGR03059	82	TIGR03059, psaOeuk, photosystem I protein PsaO	1e-34

>gnl|CDD|215040 PLN00046, PLN00046, photosystem I reaction center subunit O; Provisional

 Score =  212 bits (541), Expect = 4e-72
 Identities = 102/143 (71%), Positives = 113/143 (79%), Gaps = 3/143 (2%)

Query: 2   AAAAFASSSPVVGLGSSSLSSPKRTALGSSFVKSPVAARNPLRVAGACGGKVTCFERDWL 61
            AA  A++S V GLGSSSLS+P+R +  S FVK PV  R    +A A G K T F+RDWL
Sbjct: 1   MAATAATASTVSGLGSSSLSAPRRLS--SGFVKGPVTVRRRAVLARASGSKKT-FDRDWL 57

Query: 62  RTDLNVIGFGLIGWLAPSSIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWLWLVTW 121
           R DLNVIGFGLIGWLAPSSIPAI G SLTGLFF+SIGTELAHFPT P L S+FWLWL+TW
Sbjct: 58  RKDLNVIGFGLIGWLAPSSIPAIGGNSLTGLFFDSIGTELAHFPTGPALDSKFWLWLITW 117

Query: 122 HFGLFLCLTFGQIGFKGRTEDYF 144
           H GLFLCLTFGQIGFKGR + YF
Sbjct: 118 HLGLFLCLTFGQIGFKGRKQGYF 140

Length = 141

>gnl|CDD|132103 TIGR03059, psaOeuk, photosystem I protein PsaO

 Score =  115 bits (289), Expect = 1e-34
 Identities = 45/82 (54%), Positives = 54/82 (65%), Gaps = 2/82 (2%)

Query: 65  LNVIGFGLIGWLAPS--SIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWLWLVTWH 122
             V   G +GW+ P+  ++P   GKSLTGLF  SIG  LAHFP PP L   FWL L TWH
Sbjct: 1   APVAAIGFVGWVLPTVLNVPLYGGKSLTGLFASSIGENLAHFPAPPALDDPFWLLLFTWH 60

Query: 123 FGLFLCLTFGQIGFKGRTEDYF 144
            GLFL +TFGQIG++GR   Y+
Sbjct: 61  SGLFLVMTFGQIGWQGRKNGYY 82

Members of this family are the PsaO protein of photosystem I. This protein is found in chloroplasts but not in Cyanobacteria. Length = 82

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	146
PLN00046	141	photosystem I reaction center subunit O; Provision	100.0
TIGR03059	82	psaOeuk photosystem I protein PsaO. Members of thi	100.0

>PLN00046 photosystem I reaction center subunit O; Provisional

Probab=100.00  E-value=1.5e-79  Score=475.75  Aligned_cols=141  Identities=72%  Similarity=1.233  Sum_probs=136.2

Q ss_pred             ccccccCCcceeccccCCCCCCCccccccCcccCcccccchhhhhccCCCceeeeccchhccccccceeeeeeccccCCc
Q 032156            2 AAAAFASSSPVVGLGSSSLSSPKRTALGSSFVKSPVAARNPLRVAGACGGKVTCFERDWLRTDLNVIGFGLIGWLAPSSI   81 (146)
Q Consensus         2 ~aat~~~~stv~gl~~ssls~~~~~~l~s~f~~~~V~arnpl~~a~a~~gr~tcF~rdWlr~d~~V~~~gliGW~~PSsi   81 (146)
                      |||+|++++||+||+++++++  +.+++|+|+|++|.+|||++++.+++++++ |||||||+|++||++|||||++||+|
T Consensus         1 maa~~~a~stV~gL~~~sl~~--~~~~ss~f~~~~~~~~~~~~~~~a~~~~~t-F~rDWLr~d~~V~~~gl~GW~~PS~i   77 (141)
T PLN00046          1 MAATAATASTVSGLGSSSLSA--PRRLSSGFVKGPVTVRRRAVLARASGSKKT-FDRDWLRKDLNVIGFGLIGWLAPSSI   77 (141)
T ss_pred             ChHHHHhHHHhhhccccCccc--ccccccccccCcccccchhhhhhhcccccc-cchhhhhcccceeeeeeeeeeccccc
Confidence            566778888999999999986  678999999999999999999999999998 99999999999999999999999999


Q ss_pred             cccCCCchhhhhHhhhhhhhcCCCCCCCCCchHHHHHHHHHHHHHHHHHhhccccccccccccC
Q 032156           82 PAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWLWLVTWHFGLFLCLTFGQIGFKGRTEDYFS  145 (146)
Q Consensus        82 pa~~g~SL~glF~~SIG~eLAhFPtgPal~~~FWL~lvtWHlGLF~~ltfGQIG~kgR~e~Yf~  145 (146)
                      |+||||||+|+|++|||+|||||||||||||||||||||||+|||+|||||||||||||||||+
T Consensus        78 pa~~g~sL~glF~~sIg~~LahfPt~Pal~~~fWL~litWHlGLF~~ltfGqIG~kgR~egYF~  141 (141)
T PLN00046         78 PAIGGNSLTGLFFDSIGTELAHFPTGPALDSKFWLWLITWHLGLFLCLTFGQIGFKGRKQGYFN  141 (141)
T ss_pred             cccCCchhHHHHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHhhhcccccccccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999996

>TIGR03059 psaOeuk photosystem I protein PsaO

Probab=100.00  E-value=1.8e-57  Score=327.85  Aligned_cols=80  Identities=56%  Similarity=1.173  Sum_probs=78.8

Q ss_pred             cccceeeeeeccccC--CccccCCCchhhhhHhhhhhhhcCCCCCCCCCchHHHHHHHHHHHHHHHHHhhcccccccccc
Q 032156           65 LNVIGFGLIGWLAPS--SIPAINGKSLTGLFFESIGTELAHFPTPPPLTSQFWLWLVTWHFGLFLCLTFGQIGFKGRTED  142 (146)
Q Consensus        65 ~~V~~~gliGW~~PS--sipa~~g~SL~glF~~SIG~eLAhFPtgPal~~~FWL~lvtWHlGLF~~ltfGQIG~kgR~e~  142 (146)
                      ++||++|||||++||  +||+|||+||||+|++||||||||||||||+||||||||||||+|||+|||||||||||||||
T Consensus         1 ~~V~~~gliGW~~Ps~~~ip~~~g~SLtglF~~sIg~~LAhFPt~Pal~~~fWL~litWH~GLF~~ltfGQIG~qgR~~~   80 (82)
T TIGR03059         1 APVAAIGFVGWVLPTVLNVPLYGGKSLTGLFASSIGENLAHFPAPPALDDPFWLLLFTWHSGLFLVMTFGQIGWQGRKNG   80 (82)
T ss_pred             CCceeEeeEEeeccccccccccCCchHHHHHHHHHHHHHhcCCCCCccCCchHHHHHHHHHHHHHHHhhhhceeeccccc
Confidence            489999999999999  999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cc
Q 032156          143 YF  144 (146)
Q Consensus       143 Yf  144 (146)
                      ||
T Consensus        81 Yf   82 (82)
T TIGR03059        81 YY   82 (82)
T ss_pred             CC
Confidence            98

Members of this family are the PsaO protein of photosystem I. This protein is found in chloroplasts but not in Cyanobacteria.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00