Citrus Sinensis ID: 032220

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
Protein Sequence
MAEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIEVNVNF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
maeeepkkletetptepppppstepaapaaaeppkdvaddktvipsppaedkpeeskalavvdkapeaeppagekstegsvnrDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIEVNVNF
Flexible Loop (DISEMBL)
maeeepkkletetptepppppSTEPAAPAAAEPPKDVADDKTVIpsppaedkpeesKALAVVDKAPeaeppagekstegsvnrdavLARVETEKRISLIraweeseksqaenkahkklssivswenSRKAAVeaelkkievnvnf
Low Complexity Region (SEG)
MaeeepkkletetptepppppstepaapaaaeppkDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIEVNVNF
Disordered region (IsUnstruct)
***********************************************************************************************ISLI**********************************************
Disordered Region (DISOPRED)
***************************************************************************************ARVETEKRISL**************KAHKKLSSIVSWENSRKAAV*AELKKIEV*V**
Disordered Region (DISEMBL)
*************************************ADDKTVIPS*************AVVDK****************VNRDAVLARVETEKRISLIRAWE***************SSIVSWENSRKAAVEAELKKIEVNVNF
Disordered Region (DISPRO)
**************************************************************DKAP**************VNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIEVNVNF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIEVNVNF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	145	2.2.26 [Sep-21-2011]
P93788	198	Remorin OS=Solanum tubero	N/A	no	0.875	0.641	0.598	9e-29
O80837	190	Remorin OS=Arabidopsis th	no	no	0.841	0.642	0.492	2e-21
Q9M2D8	212	Uncharacterized protein A	no	no	0.703	0.481	0.566	9e-21

>sp|P93788|REMO_SOLTU Remorin OS=Solanum tuberosum PE=1 SV=1

 Score =  125 bits (314), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 88/147 (59%), Positives = 110/147 (74%), Gaps = 20/147 (13%)

Query: 1   MAEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDV-ADDKTVI-PS--PPAEDK--PE 54
           MAE E KK+E     +P PP      AP   E PK+V AD+K ++ P+  PPAE+K  P+
Sbjct: 1   MAELEAKKVEI---VDPAPP------APGPVEAPKEVVADEKAIVAPALPPPAEEKEKPD 51

Query: 55  ESKALAVVD-KAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENK 113
           +SKAL VV+ KAPE   PA EK  EGS++RDAVLARV TEKR+SLI+AWEESEKS+AENK
Sbjct: 52  DSKALVVVETKAPE---PADEKK-EGSIDRDAVLARVATEKRVSLIKAWEESEKSKAENK 107

Query: 114 AHKKLSSIVSWENSRKAAVEAELKKIE 140
           A KK+S+I +WENS+KA +EAELKK+E
Sbjct: 108 AQKKVSAIGAWENSKKANLEAELKKME 134

Binds to both simple and complex galacturonides. May be involved in cell-to-cell signaling and molecular transport.
Solanum tuberosum (taxid: 4113)

>sp|O80837|REMO_ARATH Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/138 (49%), Positives = 92/138 (66%), Gaps = 16/138 (11%)

Query: 1   MAEEE-PKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKAL 59
           MAEE+   K++ E+P    P     PA       P +VAD+K  I +PP    P ESKAL
Sbjct: 1   MAEEQKTSKVDVESPAVLAPAKEPTPA-------PVEVADEK--IHNPP----PVESKAL 47

Query: 60  AVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLS 119
           AVV+K  E   P  +K++ GS +RD +LA +E EK+ S I+AWEESEKS+AEN+A KK+S
Sbjct: 48  AVVEKPIEEHTP--KKASSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKIS 105

Query: 120 SIVSWENSRKAAVEAELK 137
            + +WENS+KAAVEA+L+
Sbjct: 106 DVHAWENSKKAAVEAQLR 123

Exhibits a non sequence-specific DNA-binding activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2D8|Y3126_ARATH Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1

 Score = 99.0 bits (245), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 78/106 (73%), Gaps = 4/106 (3%)

Query: 35  KDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEK 94
           KDVA++K  I +PP E   ++SKAL VV+K    E PA  K    S++RD  LA +  EK
Sbjct: 47  KDVAEEK--IQNPPPEQIFDDSKALTVVEKP--VEEPAPAKPASASLDRDVKLADLSKEK 102

Query: 95  RISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIE 140
           R+S +RAWEESEKS+AENKA KK++ + +WENS+KAAVEA+LKKIE
Sbjct: 103 RLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIE 148

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
432278309	199	remorin [Morus indica]	0.944	0.688	0.680	3e-40
255539463	182	Remorin, putative [Ricinus communis] gi|	0.710	0.565	0.724	5e-34
224120028	204	predicted protein [Populus trichocarpa]	0.896	0.637	0.705	4e-31
351723623	205	uncharacterized protein LOC100499700 [Gl	0.910	0.643	0.611	4e-31
224136994	201	predicted protein [Populus trichocarpa]	0.696	0.502	0.707	1e-30
449517457	189	PREDICTED: remorin-like [Cucumis sativus	0.703	0.539	0.688	1e-30
255541538	188	Remorin, putative [Ricinus communis] gi|	0.855	0.659	0.564	2e-30
351726140	206	uncharacterized protein LOC100500457 [Gl	0.696	0.490	0.692	2e-30
351724129	194	uncharacterized protein LOC100305501 [Gl	0.862	0.644	0.586	5e-29
395146529	422	hypothetical protein [Linum usitatissimu	0.924	0.317	0.611	7e-29

>gi|432278309|gb|AGB07445.1| remorin [Morus indica]

 Score =  169 bits (428), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 98/144 (68%), Positives = 115/144 (79%), Gaps = 7/144 (4%)

Query: 1   MAEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALA 60
           MAEE+P K+E E P+  PP   TE     A EPPKDV ++K+VIP PP EDKP+ESKALA
Sbjct: 1   MAEEQPIKVEPEAPSSEPP---TEAKVKPAEEPPKDVTEEKSVIPHPPPEDKPDESKALA 57

Query: 61  VVDKAPEAEPPAGEKST-EGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLS 119
           VVD  PE   PA EKS+ EGS+NRDAVLARV TEKR+SLIRAWEESEKS+AENKAHK +S
Sbjct: 58  VVDMEPE---PAAEKSSSEGSINRDAVLARVATEKRLSLIRAWEESEKSKAENKAHKNVS 114

Query: 120 SIVSWENSRKAAVEAELKKIEVNV 143
           SI +WENS+KA+VEA+LKK E N+
Sbjct: 115 SIGAWENSKKASVEAQLKKFEENL 138

Source: Morus indica

Species: Morus indica

Genus: Morus

Family: Moraceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539463|ref|XP_002510796.1| Remorin, putative [Ricinus communis] gi|223549911|gb|EEF51398.1| Remorin, putative [Ricinus communis]

 Score =  149 bits (375), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 79/109 (72%), Positives = 94/109 (86%), Gaps = 6/109 (5%)

Query: 31  AEPPKDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARV 90
           +EPPKDVA++K+ IP PP E   ++SKAL  V+K+ E      EKSTEGSVNRDAVLARV
Sbjct: 15  SEPPKDVAEEKSAIPPPPQEKASDDSKALVAVEKSVE------EKSTEGSVNRDAVLARV 68

Query: 91  ETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKI 139
           ETEKR+SLIRAWEESEKS+AENKAHKKLS+IVSWENS+KA+VEAELK++
Sbjct: 69  ETEKRVSLIRAWEESEKSKAENKAHKKLSAIVSWENSKKASVEAELKQM 117

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120028|ref|XP_002318224.1| predicted protein [Populus trichocarpa] gi|222858897|gb|EEE96444.1| predicted protein [Populus trichocarpa]

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/136 (70%), Positives = 110/136 (80%), Gaps = 6/136 (4%)

Query: 1   MAEEEPKKLETETPTEPPPPPSTEPAAPAA-AEPPKDVADDKTVIPSPP-AEDKPEESKA 58
           MAEEEPKK+ETETP+E PPPP    A P    +  KDVA++KTVI  PP  E+K EESKA
Sbjct: 1   MAEEEPKKVETETPSETPPPPPPPLAEPEPEVKAQKDVAEEKTVISPPPLVEEKVEESKA 60

Query: 59  LAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKL 118
           +AVV+KA E+     E+ TEGSVNRDAVLARV TEKRISLI+AWEESEKS+AENKAHKKL
Sbjct: 61  VAVVEKASES----AEEKTEGSVNRDAVLARVVTEKRISLIKAWEESEKSKAENKAHKKL 116

Query: 119 SSIVSWENSRKAAVEA 134
           SSI SWENS+KA+VEA
Sbjct: 117 SSIASWENSKKASVEA 132

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723623|ref|NP_001238565.1| uncharacterized protein LOC100499700 [Glycine max] gi|255625905|gb|ACU13297.1| unknown [Glycine max]

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 85/139 (61%), Positives = 105/139 (75%), Gaps = 7/139 (5%)

Query: 1   MAEEEPKKLETETPTEPPPPPSTEPAAPAAAE----PPKDVADDKTVIPSPPAEDKPEES 56
           M EE+ K  E+E+ T PP    ++    A AE     PKDVA++K+VIP P ++DKP+ES
Sbjct: 1   MTEEQTKTAESESVTPPPAAAPSQAPPAAEAEHVPEAPKDVAEEKSVIPVPSSDDKPDES 60

Query: 57  KALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHK 116
           KAL +V+K  E    A  K TEGSVNRDAVLARV TEKR+SLI+AWEESEKS+AENKAHK
Sbjct: 61  KALVLVEKTQEV---AEVKPTEGSVNRDAVLARVATEKRLSLIKAWEESEKSKAENKAHK 117

Query: 117 KLSSIVSWENSRKAAVEAE 135
           KLSS+ +WENS+KAAVEA+
Sbjct: 118 KLSSVSAWENSKKAAVEAD 136

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136994|ref|XP_002322467.1| predicted protein [Populus trichocarpa] gi|222869463|gb|EEF06594.1| predicted protein [Populus trichocarpa]

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/106 (70%), Positives = 88/106 (83%), Gaps = 5/106 (4%)

Query: 35  KDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEK 94
           KDVA++KTVIP   AE+K EES+A+AV++ +  AE        EGSVNRDAVLARV TEK
Sbjct: 37  KDVAEEKTVIPPSVAEEKVEESEAVAVIETSESAEEK-----KEGSVNRDAVLARVATEK 91

Query: 95  RISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIE 140
           RISL++AWEESEKS+AENKAHKKLSSI SWENS+KA+VEAEL KIE
Sbjct: 92  RISLVKAWEESEKSKAENKAHKKLSSIASWENSKKASVEAELMKIE 137

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517457|ref|XP_004165762.1| PREDICTED: remorin-like [Cucumis sativus]

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 73/106 (68%), Positives = 91/106 (85%), Gaps = 4/106 (3%)

Query: 35  KDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEK 94
           KDV ++K+VIP PP E K ++SKAL +V+K PE   P   K+TEGSVNRDAVLA+V TEK
Sbjct: 22  KDVTEEKSVIPPPP-EHKTDDSKALVLVEKVPEVADP---KTTEGSVNRDAVLAKVATEK 77

Query: 95  RISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIE 140
           R+SL++AWEESEKS+AENKAHKKLSS+ +WENS+KA+VEA+LKKIE
Sbjct: 78  RLSLVKAWEESEKSKAENKAHKKLSSVAAWENSQKASVEADLKKIE 123

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541538|ref|XP_002511833.1| Remorin, putative [Ricinus communis] gi|223549013|gb|EEF50502.1| Remorin, putative [Ricinus communis]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/140 (56%), Positives = 102/140 (72%), Gaps = 16/140 (11%)

Query: 1   MAEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALA 60
           MAE+E KKLE E+P  P P           AE   DVA DK  +P+P  E+KP++SKALA
Sbjct: 1   MAEQEAKKLEAESPVAPAP-----------AEAKSDVAHDKATVPTP--EEKPDDSKALA 47

Query: 61  VVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSS 120
           VV+K PE+ P   +K++ GS++RD  LA VE EKR S I+AWE+SEKS+AENKA KKLSS
Sbjct: 48  VVEKVPESGP---KKTSGGSLDRDIALAEVEKEKRNSFIKAWEDSEKSKAENKAQKKLSS 104

Query: 121 IVSWENSRKAAVEAELKKIE 140
           + +WENS+KAA+EA+L+KIE
Sbjct: 105 VTAWENSKKAALEAKLRKIE 124

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726140|ref|NP_001238396.1| uncharacterized protein LOC100500457 [Glycine max] gi|255630375|gb|ACU15544.1| unknown [Glycine max]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/104 (69%), Positives = 88/104 (84%), Gaps = 3/104 (2%)

Query: 32  EPPKDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVE 91
           E PKDV ++K+VIP P ++DKP+ESKAL +V+K  E    A  K TEGS+NRDAVLARV 
Sbjct: 37  EAPKDVTEEKSVIPVPSSDDKPDESKALVLVEKTQEV---AEVKPTEGSINRDAVLARVA 93

Query: 92  TEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAE 135
           TEKR+SLI+AWEESEKS+AENKAHKKLSS+ +WENS+KAAVEA+
Sbjct: 94  TEKRLSLIKAWEESEKSKAENKAHKKLSSVSAWENSKKAAVEAD 137

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724129|ref|NP_001236279.1| uncharacterized protein LOC100305501 [Glycine max] gi|255625713|gb|ACU13201.1| unknown [Glycine max]

 Score =  132 bits (332), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/145 (58%), Positives = 105/145 (72%), Gaps = 20/145 (13%)

Query: 1   MAEEEPKKL-ETET-PTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSP---PAEDKPEE 55
           M EE+ KK+ ETE+ P+ P P P           P +DVA++K+VIP P   PA+    E
Sbjct: 1   MTEEQSKKVAETESFPSNPAPEP--------VVVPKEDVAEEKSVIPQPSPSPAD----E 48

Query: 56  SKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAH 115
           SKAL +V+K  E    A EK  EGSVNRDAVLARV TEKR+SLI+AWEESEKS+A+NK+H
Sbjct: 49  SKALVIVEKTSEV---AEEKPIEGSVNRDAVLARVATEKRLSLIKAWEESEKSKADNKSH 105

Query: 116 KKLSSIVSWENSRKAAVEAELKKIE 140
           KKLS+I +WENS+KAA EAEL+KIE
Sbjct: 106 KKLSAISAWENSKKAAAEAELRKIE 130

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|395146529|gb|AFN53683.1| hypothetical protein [Linum usitatissimum]

 Score =  132 bits (331), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 85/139 (61%), Positives = 104/139 (74%), Gaps = 5/139 (3%)

Query: 3   EEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALAVV 62
           EEE KKL    P  P          PAA EPPKDVA++K+VIP+PP+E+KP++S   A+V
Sbjct: 222 EEEAKKL---VPESPAAATVVVEPPPAAEEPPKDVAEEKSVIPTPPSEEKPDDSSK-AIV 277

Query: 63  DKAPEAEPPAGE-KSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSI 121
               EAEP + E K  EGSVNRD  LARVETEKR+S I+AWEESEKS+AENKAHKK+S+I
Sbjct: 278 PLQKEAEPVSEEAKPVEGSVNRDLELARVETEKRLSFIKAWEESEKSKAENKAHKKVSAI 337

Query: 122 VSWENSRKAAVEAELKKIE 140
            SWENS+KAAVEA+L++ E
Sbjct: 338 ESWENSKKAAVEAQLRQYE 356

Source: Linum usitatissimum

Species: Linum usitatissimum

Genus: Linum

Family: Linaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
UNIPROTKB|P93788	198	P93788 "Remorin" [Solanum tube	0.689	0.505	0.663	1e-29
TAIR|locus:2172793	202	AT5G23750 "AT5G23750" [Arabido	0.634	0.455	0.7	8.2e-28
TAIR|locus:2101303	175	AT3G48940 "AT3G48940" [Arabido	0.662	0.548	0.603	1.4e-25
TAIR|locus:2098921	212	AT3G61260 [Arabidopsis thalian	0.696	0.476	0.571	2e-24
TAIR|locus:2050704	190	AT2G45820 "AT2G45820" [Arabido	0.668	0.510	0.571	2.6e-24
TAIR|locus:2051673	486	AT2G02170 "AT2G02170" [Arabido	0.386	0.115	0.431	1e-05
TAIR|locus:2204197	509	AT1G30320 "AT1G30320" [Arabido	0.475	0.135	0.378	1.8e-05
TAIR|locus:2127058	123	AT4G00670 "AT4G00670" [Arabido	0.331	0.390	0.333	8.1e-05
TAIR|locus:1005716754	120	AT1G69325 "AT1G69325" [Arabido	0.413	0.5	0.266	0.00073
TAIR|locus:2115085	427	AT4G36970 "AT4G36970" [Arabido	0.668	0.227	0.271	0.00093

UNIPROTKB|P93788 P93788 "Remorin" [Solanum tuberosum (taxid:4113)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 73/110 (66%), Positives = 92/110 (83%)

Query:    37 VADDKTVI-PS--PPAEDK--PEESKALAVVD-KAPEAEPPAGEKSTEGSVNRDAVLARV 90
             VAD+K ++ P+  PPAE+K  P++SKAL VV+ KAPE   PA EK  EGS++RDAVLARV
Sbjct:    29 VADEKAIVAPALPPPAEEKEKPDDSKALVVVETKAPE---PADEKK-EGSIDRDAVLARV 84

Query:    91 ETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIE 140
              TEKR+SLI+AWEESEKS+AENKA KK+S+I +WENS+KA +EAELKK+E
Sbjct:    85 ATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKME 134

GO:0005886 "plasma membrane" evidence=IDA

GO:0007267 "cell-cell signaling" evidence=NAS

GO:0048032 "galacturonate binding" evidence=IDA

TAIR|locus:2172793 AT5G23750 "AT5G23750" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 70/100 (70%), Positives = 82/100 (82%)

Query:    43 VIPSP-PAEDKPEESKALA-VVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIR 100
             V+PSP PAE+K E+SKA+  VV K  E E    E+  EGSVNRDAVLARVETEKR+SLI+
Sbjct:    45 VLPSPAPAEEKQEDSKAIVPVVPK--EVE----EEKKEGSVNRDAVLARVETEKRMSLIK 98

Query:   101 AWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIE 140
             AWEE+EK + ENKA KKLSSI SWEN++KAAVEAELKK+E
Sbjct:    99 AWEEAEKCKVENKAEKKLSSIGSWENNKKAAVEAELKKME 138

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0042546 "cell wall biogenesis" evidence=RCA

TAIR|locus:2101303 AT3G48940 "AT3G48940" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 61/101 (60%), Positives = 80/101 (79%)

Query:    45 PSPPA-EDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWE 103
             PSPP+ E+K ++SKA+ +V  A E   P  +K   GSV+RDAVL R+E +KRISLI+AWE
Sbjct:    19 PSPPSKEEKSDDSKAIVLVVAAKE---PTEDKKV-GSVHRDAVLVRLEQDKRISLIKAWE 74

Query:   104 ESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIEVNVN 144
             E+EKS+ ENKA KK+SS+ +WENS+KA+VEAELKKIE  +N
Sbjct:    75 EAEKSKVENKAQKKISSVGAWENSKKASVEAELKKIEEQLN 115

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2098921 AT3G61260 [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 60/105 (57%), Positives = 78/105 (74%)

Query:    36 DVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKR 95
             DVA++K  I +PP E   ++SKAL VV+K P  E PA  K    S++RD  LA +  EKR
Sbjct:    48 DVAEEK--IQNPPPEQIFDDSKALTVVEK-P-VEEPAPAKPASASLDRDVKLADLSKEKR 103

Query:    96 ISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIE 140
             +S +RAWEESEKS+AENKA KK++ + +WENS+KAAVEA+LKKIE
Sbjct:   104 LSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIE 148

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2050704 AT2G45820 "AT2G45820" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 60/105 (57%), Positives = 80/105 (76%)

Query:    36 DVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKR 95
             +VAD+K  I +PP    P ESKALAVV+K  E   P  +K++ GS +RD +LA +E EK+
Sbjct:    30 EVADEK--IHNPP----PVESKALAVVEKPIEEHTP--KKASSGSADRDVILADLEKEKK 81

Query:    96 ISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIE 140
              S I+AWEESEKS+AEN+A KK+S + +WENS+KAAVEA+L+KIE
Sbjct:    82 TSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIE 126

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2051673 AT2G02170 "AT2G02170" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 25/58 (43%), Positives = 37/58 (63%)

Query:    88 ARVETEKRISLIRA--WEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIEVNV 143
             A ++T K +S  RA  WEE+EK++   +  ++   I +WEN +KA  EAE+KK EV V
Sbjct:   364 ASLQTSKSVSEARATAWEEAEKAKHMARFRREEMKIQAWENHQKAKSEAEMKKTEVKV 421

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2204197 AT1G30320 "AT1G30320" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 28/74 (37%), Positives = 44/74 (59%)

Query:    72 AGEKSTEGSVNR-DAVLA-RVETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRK 129
             A ++  E   N  DA  A ++E EKR +   AWEE+EKS+   +  ++   I +WE+  K
Sbjct:   373 ASKEEEENKKNNGDAEEAQKIEFEKRAT---AWEEAEKSKHNARYKREEIRIQAWESQEK 429

Query:   130 AAVEAELKKIEVNV 143
             A +EAE+++IE  V
Sbjct:   430 AKLEAEMRRIEAKV 443

GO:0003677 "DNA binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2127058 AT4G00670 "AT4G00670" [Arabidopsis thaliana (taxid:3702)]

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 16/48 (33%), Positives = 30/48 (62%)

Query:    93 EKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIE 140
             +++  +I+AW+E + ++  NK  KKL  I  WE  +   +E+EL +I+
Sbjct:    11 DEQSKVIKAWKELKITKVNNKTQKKLLDISGWEKKKTTKIESELARIQ 58

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:1005716754 AT1G69325 "AT1G69325" [Arabidopsis thaliana (taxid:3702)]

 Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
 Identities = 16/60 (26%), Positives = 34/60 (56%)

Query:    84 DAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIEVNV 143
             ++ + R + E   +++  W+E+E S++  K  K    IVSWE+ ++   + +L + E +V
Sbjct:     3 ESTVQRAKPEHMAAVVDQWKETEISKSRKKYEKLSEKIVSWEDKKRKKAKRKLHRTERSV 62

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2115085 AT4G36970 "AT4G36970" [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 0.00093, P = 0.00093
 Identities = 28/103 (27%), Positives = 49/103 (47%)

Query:    42 TVIPSPPAEDKPEESKALAVVDK-APEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIR 100
             +VI  PP   +  E K    +DK A   + P     +   + R+       +E   S   
Sbjct:   250 SVIEPPPCRGEVREVK----MDKGARMIKRPKRRVMSSRIIRREQPEVEDNSEASASS-S 304

Query:   101 AWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIEVNV 143
             +W+ SE +   +K  ++ + I +WEN +KA  EA ++K+EV +
Sbjct:   305 SWDISEPAMTLSKLQREEAKIAAWENLQKAKAEAAIRKLEVKL 347


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.301   0.119   0.315    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      145       111   0.00091  102 3  11 23  0.46    31
                                                     29  0.42    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  499 (53 KB)
  Total size of DFA:  105 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.87u 0.09s 19.96t   Elapsed:  00:00:02
  Total cpu time:  19.87u 0.09s 19.96t   Elapsed:  00:00:02
  Start:  Mon May 20 17:35:26 2013   End:  Mon May 20 17:35:28 2013

GO:0003677 "DNA binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	145
pfam03763	112	pfam03763, Remorin_C, Remorin, C-terminal region	2e-09
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	5e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.002
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	0.004
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	0.004

>gnl|CDD|190741 pfam03763, Remorin_C, Remorin, C-terminal region

 Score = 51.9 bits (125), Expect = 2e-09
 Identities = 23/52 (44%), Positives = 33/52 (63%)

Query: 90  VETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIEV 141
            +  +  S   AWEE+EK++  NK  ++ + I +WEN +KA  EAELKKIE 
Sbjct: 1   SKKSEAESRADAWEEAEKAKINNKYQREEAKIQAWENKKKAKAEAELKKIER 52

Remorins are plant-specific plasma membrane-associated proteins. In tobacco remorin co-purifies with lipid rafts. Most remorins have a variable, proline-rich C-half and a more conserved N-half that is predicted to form coiled coils. Consistent with this, circular dichroism studies have demonstrated that much of the protein is alpha-helical. Remorins exist in plasma membrane preparations as oligomeric structures and form filaments in vitro. The proteins can bind polyanions including the extracellular matrix component oligogalacturonic acid (OGA). In vitro, remorin in plasma membrane preparations is phosphorylated (principally on threonine residues) in the presence of OGA and thus co-purifies with a protein kinases(s). The biological functions of remorins are unknown but roles as components of the membrane/cytoskeleton are possible. Length = 112

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 18/82 (21%), Positives = 21/82 (25%), Gaps = 4/82 (4%)

Query: 2   AEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALAV 61
                             P +  PAAPA A P           P  PA      +   A 
Sbjct: 44  PTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPA----APPKPAAAAAAAAAPAAP 99

Query: 62  VDKAPEAEPPAGEKSTEGSVNR 83
              A  A P A     E +  R
Sbjct: 100 PAAAAAAAPAAAAVEDEVTPLR 121

Length = 1228

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 6/96 (6%)

Query: 2   AEEEPKKLETETPTEPPPPPSTEPAAPA-----AAEPPKDVADDKTVIPSPPAEDKPEES 56
           A        T  P+  P   +     P       A PP               E  P+ +
Sbjct: 373 AAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLT 432

Query: 57  KALAVVDKAPEAEPPAGEKSTEGSVNRD-AVLARVE 91
           +A   VD+ P+  PPA  K  E ++  D  VL ++E
Sbjct: 433 RAAIPVDEKPKYTPPAPPKEEEKALIADGDVLEQLE 468

Length = 585

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 22/92 (23%), Positives = 28/92 (30%), Gaps = 9/92 (9%)

Query: 9   LETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALAVVDKAPEA 68
            E +T   PP       AA  A +   +        P PPA  KP    A       P  
Sbjct: 116 SEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAA-----AKPPE 170

Query: 69  EPPAGEKSTEGSVNRDAVLARVETEKRISLIR 100
             PA +         D      ET   +S +R
Sbjct: 171 PAPAAKPPPTPVARAD----PRETRVPMSRMR 198

Length = 418

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 36.0 bits (83), Expect = 0.004
 Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 11/65 (16%)

Query: 19  PPPSTEPAAPAAAEPP-----KDVADDKTVIPSPPAEDKPEESKALAVVDK----APEAE 69
                  A  AA   P     + +A     +P P      +E +A A        AP A 
Sbjct: 49  KAAEQMAAPEAAEAAPLPAAAESIAS--PEVPPPVPPAPAQEGEAPAAEQPSAVPAPSAA 106

Query: 70  PPAGE 74
           P   E
Sbjct: 107 PAPAE 111

Length = 931

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	145
PF03766	57	Remorin_N: Remorin, N-terminal region ; InterPro:	99.61
PF03763	111	Remorin_C: Remorin, C-terminal region ; InterPro:	99.59

>PF03766 Remorin_N: Remorin, N-terminal region ; InterPro: IPR005518 Remorin binds both simple and complex galaturonides

Probab=99.61  E-value=3.2e-16  Score=107.25  Aligned_cols=53  Identities=62%  Similarity=0.965  Sum_probs=46.3

Q ss_pred             CCccccCCCCCCCCCCCCCccccceeeeecCCCCCCCCCCCCCCCchhHHHHHHHH
Q 032220           35 KDVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARV   90 (145)
Q Consensus        35 kdvaeekaviP~p~~~~~~ddsKAl~vvek~~~~~~~~~~k~~~gs~drD~~Larv   90 (145)
                      +|++++++++|||. +.+.||||||++|++..+.  ++.+|+++||+|||++||||
T Consensus         5 ~dva~ek~~~PpP~-~~k~ddSKAl~vVek~~~e--pa~eK~s~GS~dRDa~LA~v   57 (57)
T PF03766_consen    5 KDVAEEKSVIPPPA-EEKPDDSKALVVVEKKVPE--PAEEKPSEGSIDRDAALARV   57 (57)
T ss_pred             hhhccccCCCCCCC-CCCCCccceEEEeeccCCC--ccccccCCCcchhhhhhhcC
Confidence            78999999988775 6788999999999986332  78889999999999999986

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides

Probab=99.59  E-value=2e-15  Score=112.71  Aligned_cols=53  Identities=38%  Similarity=0.610  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHhhhhhhhHHHHHHhhhhhcC
Q 032220           92 TEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVEAELKKIEVNVN  144 (145)
Q Consensus        92 ~EKr~slIkAWEEsEKaKaeNka~kk~s~I~aWEnskKA~~EAeLkKiEeklE  144 (145)
                      .+.+.+.|.|||++|++|+.|||++++++|++|||++|+++|++|+++|++||
T Consensus         2 ~~~~~a~a~aWe~ae~aK~~~r~~ree~~I~aWEn~qkaKaea~m~k~E~klE   54 (111)
T PF03763_consen    2 KEEVEAKADAWEEAEKAKINNRYEREEAKIQAWENLQKAKAEAEMRKIEEKLE   54 (111)
T ss_pred             cHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999997

The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	145
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-05
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-04
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	7e-04

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 19/127 (14%), Positives = 32/127 (25%)

Query: 2   AEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKTVIPSPPAEDKPEESKALAV 61
             E  K+ E E   E     +   A  +    P       T      +  KPEE  +  V
Sbjct: 45  TNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVV 104

Query: 62  VDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSI 121
            +       P  +K TE            +     +      + +  +   K  K     
Sbjct: 105 AETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIK 164

Query: 122 VSWENSR 128
            +     
Sbjct: 165 FNSWEEL 171

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 22/118 (18%), Positives = 34/118 (28%), Gaps = 5/118 (4%)

Query: 2   AEEEPKKLETETPTEPPPPPSTEPAAPAAAEPPKDVADDKT---VIPSPPAEDKPEESKA 58
           A  E     TE  +      + E       E  ++   +K       S  A     E+  
Sbjct: 25  AVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAAT 84

Query: 59  LAV--VDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKA 114
                   A + E  A E   E         +  ETE +       +ES+ +   NK 
Sbjct: 85  TETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKT 142

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 37.6 bits (86), Expect = 7e-04
 Identities = 16/113 (14%), Positives = 29/113 (25%), Gaps = 2/113 (1%)

Query: 4   EEPKKLETETPTEPPPPPSTEPAAPAAAEPPK--DVADDKTVIPSPPAEDKPEESKALAV 61
           EE    E            +E +   A +  +     ++K       A      S A   
Sbjct: 22  EETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNE 81

Query: 62  VDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKA 114
                 AE  +  K  E +    A     E + +       +    +Q +   
Sbjct: 82  AATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESK 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00