Citrus Sinensis ID: 032243

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
Protein Sequence
MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCST
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccccccHHHHHHHHHHHcccEEEccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEcHHHHHHccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHccHHHHcccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mqwdtagqERFRTITSSYYRGAHGIIIVYdvtdqesfNNVKQWLNEIDRYASDNVNkllvgnkcdltanKVVSYETAKAFadeigipfmetsakdsTNVEQAFMAMAASIKDrmasqpsmnnarpptvqikgqpvaqksgccst
Flexible Loop (DISEMBL)
mqwdtagqeRFRTitssyyrgaHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNArpptvqikgqpvaqksgccst
Low Complexity Region (SEG)
MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCST
Disordered region (IsUnstruct)
**********FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFM*******************************************************
Disordered Region (DISOPRED)
MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI****************************SGCC**
Disordered Region (DISEMBL)
********ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQ***************
Disordered Region (DISPRO)
MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA*****************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	144	2.2.26 [Sep-21-2011]
P28188	203	Ras-related protein RABD2	yes	no	0.986	0.699	0.894	8e-74
Q05737	203	GTP-binding protein YPTM2	N/A	no	0.986	0.699	0.887	8e-72
P40392	202	Ras-related protein RIC1	no	no	0.979	0.698	0.822	2e-68
Q9SEH3	202	Ras-related protein RABD2	no	no	0.979	0.698	0.823	2e-67
Q9FPJ4	202	Ras-related protein RABD2	no	no	0.979	0.698	0.823	3e-66
Q39571	203	GTP-binding protein YPTC1	N/A	no	0.972	0.689	0.780	4e-60
Q6NYB7	205	Ras-related protein Rab-1	yes	no	0.972	0.682	0.735	6e-58
P62821	205	Ras-related protein Rab-1	yes	no	0.972	0.682	0.735	6e-58
P62820	205	Ras-related protein Rab-1	yes	no	0.972	0.682	0.735	6e-58
P62822	205	Ras-related protein Rab-1	yes	no	0.972	0.682	0.735	6e-58

>sp|P28188|RAD2A_ARATH Ras-related protein RABD2a OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3

 Score =  275 bits (702), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 127/142 (89%), Positives = 137/142 (96%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGIIIVYDVTD+ESFNNVKQWL+EIDRYASDNVNKLLVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGN 121

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           K DLT N+ + YETAKAFADEIGIPFMETSAKD+TNVEQAFMAM+ASIK+RMASQP+ NN
Sbjct: 122 KSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGNN 181

Query: 123 ARPPTVQIKGQPVAQKSGCCST 144
           ARPPTVQI+GQPVAQK+GCCST
Sbjct: 182 ARPPTVQIRGQPVAQKNGCCST 203

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).
Arabidopsis thaliana (taxid: 3702)

>sp|Q05737|YPTM2_MAIZE GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1

 Score =  268 bits (685), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 126/142 (88%), Positives = 135/142 (95%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 121

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           K DLTANKVV+ ETAKAFADE+GIPFMETSAK++TNV+QAFMAMAASIKDRMASQP+  N
Sbjct: 122 KSDLTANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASIKDRMASQPAAAN 181

Query: 123 ARPPTVQIKGQPVAQKSGCCST 144
           ARP TVQI+GQPV QK+ CCS+
Sbjct: 182 ARPATVQIRGQPVNQKTSCCSS 203

Protein transport. Probably involved in vesicular traffic.

Zea mays (taxid: 4577)

>sp|P40392|RIC1_ORYSJ Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2

 Score =  256 bits (655), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 116/141 (82%), Positives = 129/141 (91%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           KCDL  N+VVSYE  KA ADEIGIPF+ETSAKD+TNVE+AFM MA  IK+RMASQP+ N 
Sbjct: 122 KCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQPATNA 181

Query: 123 ARPPTVQIKGQPVAQKSGCCS 143
           ++P TVQ++GQPVAQ+S CCS
Sbjct: 182 SKPATVQMRGQPVAQQSSCCS 202

Possesses GTPase activity.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SEH3|RAD2C_ARATH Ras-related protein RABD2c OS=Arabidopsis thaliana GN=RABD2C PE=1 SV=1

 Score =  253 bits (647), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 117/142 (82%), Positives = 132/142 (92%), Gaps = 1/142 (0%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGII+ YDVTD ESFNNVKQWLNEIDRYAS+NVNKLLVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVGN 121

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           KCDLT+ KVVS ETAKAFADE+GIPF+ETSAK++TNVE+AFMAM A+IK RMASQP+   
Sbjct: 122 KCDLTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPA-GG 180

Query: 123 ARPPTVQIKGQPVAQKSGCCST 144
           ++PPTVQI+GQPV Q+SGCCS+
Sbjct: 181 SKPPTVQIRGQPVNQQSGCCSS 202

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FPJ4|RAD2B_ARATH Ras-related protein RABD2b OS=Arabidopsis thaliana GN=RABD2B PE=2 SV=1

 Score =  249 bits (637), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 117/142 (82%), Positives = 131/142 (92%), Gaps = 1/142 (0%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGII+ YDVTD ESFNNVKQWLNEIDRYAS+NVNKLLVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVGN 121

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           K DLT+ KVVS ETAKAFADE+GIPF+ETSAK++TNVE+AFMAM A+IK RMASQP+   
Sbjct: 122 KNDLTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPA-GG 180

Query: 123 ARPPTVQIKGQPVAQKSGCCST 144
           A+PPTVQI+GQPV Q+SGCCS+
Sbjct: 181 AKPPTVQIRGQPVNQQSGCCSS 202

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Arabidopsis thaliana (taxid: 3702)

>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1

 Score =  229 bits (584), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 110/141 (78%), Positives = 121/141 (85%), Gaps = 1/141 (0%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           K DLT+ KVV Y  AKAFADEIGIPF+ETSAK++TNVEQAFM MAA IK+RMASQP    
Sbjct: 122 KSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPIPTK 181

Query: 123 ARPPTVQIK-GQPVAQKSGCC 142
           A  P V+ + G+P+  KS  C
Sbjct: 182 AGGPVVRPQEGKPINSKSSSC 202

Protein transport. Probably involved in vesicular traffic.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3

 Score =  222 bits (565), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 103/140 (73%), Positives = 113/140 (80%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 65  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 124

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           KCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +   
Sbjct: 125 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 184

Query: 123 ARPPTVQIKGQPVAQKSGCC 142
           A    V+I+  PV Q  G C
Sbjct: 185 AEKSNVKIQSTPVKQSGGGC 204

Probably required for transit of protein from the ER through Golgi compartment. Binds GTP and GDP and possesses intrinsic GTPase activity.

Rattus norvegicus (taxid: 10116)

>sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3

 Score =  222 bits (565), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 103/140 (73%), Positives = 113/140 (80%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 65  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 124

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           KCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +   
Sbjct: 125 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 184

Query: 123 ARPPTVQIKGQPVAQKSGCC 142
           A    V+I+  PV Q  G C
Sbjct: 185 AEKSNVKIQSTPVKQSGGGC 204

Probably required for transit of protein from the ER through Golgi compartment. Binds GTP and GDP and possesses intrinsic GTPase activity.

Mus musculus (taxid: 10090)

>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3

 Score =  222 bits (565), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 103/140 (73%), Positives = 113/140 (80%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 65  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 124

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           KCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +   
Sbjct: 125 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 184

Query: 123 ARPPTVQIKGQPVAQKSGCC 142
           A    V+I+  PV Q  G C
Sbjct: 185 AEKSNVKIQSTPVKQSGGGC 204

Probably required for transit of protein from the ER through Golgi compartment. Binds GTP and GDP and possesses intrinsic GTPase activity.

Homo sapiens (taxid: 9606)

>sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3

 Score =  222 bits (565), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 103/140 (73%), Positives = 113/140 (80%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 65  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 124

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           KCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +   
Sbjct: 125 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 184

Query: 123 ARPPTVQIKGQPVAQKSGCC 142
           A    V+I+  PV Q  G C
Sbjct: 185 AEKSNVKIQSTPVKQSGGGC 204

Probably required for transit of protein from the ER through Golgi compartment. Binds GTP and GDP and possesses intrinsic GTPase activity.

Canis familiaris (taxid: 9615)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
224074217	203	predicted protein [Populus trichocarpa]	0.986	0.699	0.929	4e-75
359497565	207	PREDICTED: GTP-binding protein YPTM2 [Vi	0.986	0.685	0.922	1e-74
296083547	198	unnamed protein product [Vitis vinifera]	0.986	0.717	0.922	1e-74
225454983	203	PREDICTED: GTP-binding protein YPTM2 [Vi	0.986	0.699	0.922	3e-74
390979747	203	small GTPase [Hevea brasiliensis]	0.986	0.699	0.922	6e-74
224063625	203	predicted protein [Populus trichocarpa]	0.986	0.699	0.915	6e-74
255581964	203	protein with unknown function [Ricinus c	0.986	0.699	0.922	8e-74
255539911	203	protein with unknown function [Ricinus c	0.986	0.699	0.922	3e-73
356568583	202	PREDICTED: ras-related protein RABD2a-li	0.979	0.698	0.922	5e-73
359806422	202	uncharacterized protein LOC100783333 [Gl	0.979	0.698	0.922	6e-73

>gi|224074217|ref|XP_002304305.1| predicted protein [Populus trichocarpa] gi|118485751|gb|ABK94725.1| unknown [Populus trichocarpa] gi|222841737|gb|EEE79284.1| predicted protein [Populus trichocarpa]

 Score =  285 bits (729), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 132/142 (92%), Positives = 140/142 (98%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           KCDLTANKVVSYETAKAFADEIGIPFMETSAK++TNVEQAFMAMAA IK+RMASQP+MNN
Sbjct: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPAMNN 181

Query: 123 ARPPTVQIKGQPVAQKSGCCST 144
           ARPPTVQI+GQPV QKSGCCS+
Sbjct: 182 ARPPTVQIRGQPVNQKSGCCSS 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497565|ref|XP_002265463.2| PREDICTED: GTP-binding protein YPTM2 [Vitis vinifera]

 Score =  283 bits (725), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 131/142 (92%), Positives = 139/142 (97%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVGN
Sbjct: 66  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 125

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           KCDLTANKVVSYETAKAFADEIGIPFMETSAK++TNVEQAFMAMAA IK+RMASQP+MN 
Sbjct: 126 KCDLTANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPAMNT 185

Query: 123 ARPPTVQIKGQPVAQKSGCCST 144
           ARPPTVQI+GQPV QKSGCCS+
Sbjct: 186 ARPPTVQIRGQPVNQKSGCCSS 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083547|emb|CBI23542.3| unnamed protein product [Vitis vinifera]

 Score =  283 bits (724), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 131/142 (92%), Positives = 139/142 (97%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVGN
Sbjct: 57  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 116

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           KCDLTANKVVSYETAKAFADEIGIPFMETSAK++TNVEQAFMAMAA IK+RMASQP+MN 
Sbjct: 117 KCDLTANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPAMNT 176

Query: 123 ARPPTVQIKGQPVAQKSGCCST 144
           ARPPTVQI+GQPV QKSGCCS+
Sbjct: 177 ARPPTVQIRGQPVNQKSGCCSS 198

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454983|ref|XP_002281150.1| PREDICTED: GTP-binding protein YPTM2 [Vitis vinifera] gi|297744977|emb|CBI38569.3| unnamed protein product [Vitis vinifera]

 Score =  282 bits (722), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 131/142 (92%), Positives = 139/142 (97%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           KCDLTANKVVSYETAKAFADEIGIPFMETSAK++TNVEQAFMAMAA IK RMASQP+MNN
Sbjct: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAADIKTRMASQPAMNN 181

Query: 123 ARPPTVQIKGQPVAQKSGCCST 144
           ARPP+VQ++GQPV QKSGCCS+
Sbjct: 182 ARPPSVQLQGQPVNQKSGCCSS 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|390979747|gb|AFM30910.1| small GTPase [Hevea brasiliensis]

 Score =  281 bits (719), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 131/142 (92%), Positives = 139/142 (97%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           KCDLTANKVVSYETAKAFADEIGIPFMETSAK++TNVE+AFMAMAA IK+RMASQP+ NN
Sbjct: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKNATNVEEAFMAMAADIKNRMASQPAANN 181

Query: 123 ARPPTVQIKGQPVAQKSGCCST 144
           ARPPTVQI+GQPV QKSGCCS+
Sbjct: 182 ARPPTVQIRGQPVNQKSGCCSS 203

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063625|ref|XP_002301234.1| predicted protein [Populus trichocarpa] gi|222842960|gb|EEE80507.1| predicted protein [Populus trichocarpa]

 Score =  281 bits (719), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 130/142 (91%), Positives = 138/142 (97%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 121

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           K DLTANKVVSYETAKAFADEIGIPFMETSAKD+TNVEQAFMAMAA+IKDRMASQP+MNN
Sbjct: 122 KSDLTANKVVSYETAKAFADEIGIPFMETSAKDATNVEQAFMAMAAAIKDRMASQPAMNN 181

Query: 123 ARPPTVQIKGQPVAQKSGCCST 144
           A+P TVQ++GQPV QK GCCS+
Sbjct: 182 AKPSTVQLRGQPVEQKGGCCSS 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581964|ref|XP_002531780.1| protein with unknown function [Ricinus communis] gi|223528573|gb|EEF30594.1| protein with unknown function [Ricinus communis]

 Score =  281 bits (718), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 131/142 (92%), Positives = 139/142 (97%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           K DLTANKVVSYETAKAFADEIGIPFMETSAK++TNVEQAFMAMAA IK+RMASQP+MNN
Sbjct: 122 KNDLTANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPAMNN 181

Query: 123 ARPPTVQIKGQPVAQKSGCCST 144
           ARPPTVQI+GQPV QKSGCCS+
Sbjct: 182 ARPPTVQIRGQPVNQKSGCCSS 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539911|ref|XP_002511020.1| protein with unknown function [Ricinus communis] gi|223550135|gb|EEF51622.1| protein with unknown function [Ricinus communis]

 Score =  279 bits (713), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 131/142 (92%), Positives = 138/142 (97%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           K DLTANKVVSYETAKAFADEIGIPFMETSAK++TNVEQAFMAMAA IK+RMASQP+ NN
Sbjct: 122 KSDLTANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAADIKNRMASQPAANN 181

Query: 123 ARPPTVQIKGQPVAQKSGCCST 144
           ARPPTVQI+GQPV QKSGCCS+
Sbjct: 182 ARPPTVQIRGQPVNQKSGCCSS 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568583|ref|XP_003552490.1| PREDICTED: ras-related protein RABD2a-like [Glycine max]

 Score =  278 bits (712), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 131/142 (92%), Positives = 138/142 (97%), Gaps = 1/142 (0%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGIIIVYDVTD+ESFNNVKQWL+EIDRYASDNVNKLLVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGN 121

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           KCDL AN+ VSYETAKAFADEIGIPFMETSAKD+TNVEQAFMAMAASIKDRMASQP+ NN
Sbjct: 122 KCDLEANRAVSYETAKAFADEIGIPFMETSAKDATNVEQAFMAMAASIKDRMASQPA-NN 180

Query: 123 ARPPTVQIKGQPVAQKSGCCST 144
           ARPPTVQI+GQPVAQK GCCS+
Sbjct: 181 ARPPTVQIRGQPVAQKGGCCSS 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806422|ref|NP_001241498.1| uncharacterized protein LOC100783333 [Glycine max] gi|255636244|gb|ACU18462.1| unknown [Glycine max]

 Score =  278 bits (711), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 131/142 (92%), Positives = 139/142 (97%), Gaps = 1/142 (0%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGN 121

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           KCDLTANKVVSYETAKAFADEIGIPFMETSAK++TNVEQAFMAMAA IK+RMASQP +NN
Sbjct: 122 KCDLTANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQP-VNN 180

Query: 123 ARPPTVQIKGQPVAQKSGCCST 144
           ARPPTVQI+GQPV QK+GCCST
Sbjct: 181 ARPPTVQIRGQPVNQKAGCCST 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
TAIR|locus:2205603	203	RA-5 "RAS 5" [Arabidopsis thal	0.986	0.699	0.894	2.2e-66
TAIR|locus:2129161	202	RAB1C "RAB GTPase homolog 1C"	0.979	0.698	0.823	9e-61
TAIR|locus:2171484	202	RAB1A "RAB GTPase homolog 1A"	0.979	0.698	0.823	8.1e-60
UNIPROTKB|F1NNL7	205	RAB1A "Uncharacterized protein	0.972	0.682	0.744	8e-53
UNIPROTKB|A1L528	205	RAB1A "RAB1A, member RAS oncog	0.972	0.682	0.737	2.1e-52
UNIPROTKB|Q3ZBD1	173	RAB1A "RAB1A, member RAS oncog	0.972	0.809	0.737	2.1e-52
UNIPROTKB|F1Q0H3	250	RAB1A "Ras-related protein Rab	0.972	0.56	0.737	2.1e-52
UNIPROTKB|P62822	205	RAB1A "Ras-related protein Rab	0.972	0.682	0.737	2.1e-52
UNIPROTKB|E7END7	173	RAB1A "Ras-related protein Rab	0.972	0.809	0.737	2.1e-52
UNIPROTKB|P62820	205	RAB1A "Ras-related protein Rab	0.972	0.682	0.737	2.1e-52

TAIR|locus:2205603 RA-5 "RAS 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
 Identities = 127/142 (89%), Positives = 137/142 (96%)

Query:     3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
             WDTAGQERFRTITSSYYRGAHGIIIVYDVTD+ESFNNVKQWL+EIDRYASDNVNKLLVGN
Sbjct:    62 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGN 121

Query:    63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
             K DLT N+ + YETAKAFADEIGIPFMETSAKD+TNVEQAFMAM+ASIK+RMASQP+ NN
Sbjct:   122 KSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGNN 181

Query:   123 ARPPTVQIKGQPVAQKSGCCST 144
             ARPPTVQI+GQPVAQK+GCCST
Sbjct:   182 ARPPTVQIRGQPVAQKNGCCST 203

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IMP;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0000139 "Golgi membrane" evidence=IDA

GO:0032588 "trans-Golgi network membrane" evidence=IDA

TAIR|locus:2129161 RAB1C "RAB GTPase homolog 1C" [Arabidopsis thaliana (taxid:3702)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 117/142 (82%), Positives = 132/142 (92%)

Query:     3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
             WDTAGQERFRTITSSYYRGAHGII+ YDVTD ESFNNVKQWLNEIDRYAS+NVNKLLVGN
Sbjct:    62 WDTAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVGN 121

Query:    63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
             KCDLT+ KVVS ETAKAFADE+GIPF+ETSAK++TNVE+AFMAM A+IK RMASQP+   
Sbjct:   122 KCDLTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPA-GG 180

Query:   123 ARPPTVQIKGQPVAQKSGCCST 144
             ++PPTVQI+GQPV Q+SGCCS+
Sbjct:   181 SKPPTVQIRGQPVNQQSGCCSS 202

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0009860 "pollen tube growth" evidence=IGI

GO:0009506 "plasmodesma" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2171484 RAB1A "RAB GTPase homolog 1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 117/142 (82%), Positives = 131/142 (92%)

Query:     3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
             WDTAGQERFRTITSSYYRGAHGII+ YDVTD ESFNNVKQWLNEIDRYAS+NVNKLLVGN
Sbjct:    62 WDTAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVGN 121

Query:    63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
             K DLT+ KVVS ETAKAFADE+GIPF+ETSAK++TNVE+AFMAM A+IK RMASQP+   
Sbjct:   122 KNDLTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPA-GG 180

Query:   123 ARPPTVQIKGQPVAQKSGCCST 144
             A+PPTVQI+GQPV Q+SGCCS+
Sbjct:   181 AKPPTVQIRGQPVNQQSGCCSS 202

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009860 "pollen tube growth" evidence=IGI

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

UNIPROTKB|F1NNL7 RAB1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 105/141 (74%), Positives = 115/141 (81%)

Query:     3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
             WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct:    65 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 124

Query:    63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
             KCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +   
Sbjct:   125 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 184

Query:   123 ARPPTVQIKGQPVAQKSG-CC 142
             A    V+I+  PV Q SG CC
Sbjct:   185 AEKSNVKIQSTPVKQSSGGCC 205

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|A1L528 RAB1A "RAB1A, member RAS oncogene family" [Bos taurus (taxid:9913)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 104/141 (73%), Positives = 114/141 (80%)

Query:     3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
             WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct:    65 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 124

Query:    63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
             KCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +   
Sbjct:   125 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 184

Query:   123 ARPPTVQIKGQPVAQKSG-CC 142
             A    V+I+  PV Q  G CC
Sbjct:   185 AEKSNVKIQSTPVKQSGGGCC 205

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|Q3ZBD1 RAB1A "RAB1A, member RAS oncogene family" [Bos taurus (taxid:9913)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 104/141 (73%), Positives = 114/141 (80%)

Query:     3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
             WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct:    33 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 92

Query:    63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
             KCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +   
Sbjct:    93 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 152

Query:   123 ARPPTVQIKGQPVAQKSG-CC 142
             A    V+I+  PV Q  G CC
Sbjct:   153 AEKSNVKIQSTPVKQSGGGCC 173

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|F1Q0H3 RAB1A "Ras-related protein Rab-1A" [Canis lupus familiaris (taxid:9615)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 104/141 (73%), Positives = 114/141 (80%)

Query:     3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
             WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct:   110 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 169

Query:    63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
             KCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +   
Sbjct:   170 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 229

Query:   123 ARPPTVQIKGQPVAQKSG-CC 142
             A    V+I+  PV Q  G CC
Sbjct:   230 AEKSNVKIQSTPVKQSGGGCC 250

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P62822 RAB1A "Ras-related protein Rab-1A" [Canis lupus familiaris (taxid:9615)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 104/141 (73%), Positives = 114/141 (80%)

Query:     3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
             WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct:    65 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 124

Query:    63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
             KCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +   
Sbjct:   125 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 184

Query:   123 ARPPTVQIKGQPVAQKSG-CC 142
             A    V+I+  PV Q  G CC
Sbjct:   185 AEKSNVKIQSTPVKQSGGGCC 205

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|E7END7 RAB1A "Ras-related protein Rab-1A" [Homo sapiens (taxid:9606)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 104/141 (73%), Positives = 114/141 (80%)

Query:     3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
             WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct:    33 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 92

Query:    63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
             KCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +   
Sbjct:    93 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 152

Query:   123 ARPPTVQIKGQPVAQKSG-CC 142
             A    V+I+  PV Q  G CC
Sbjct:   153 AEKSNVKIQSTPVKQSGGGCC 173

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|P62820 RAB1A "Ras-related protein Rab-1A" [Homo sapiens (taxid:9606)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 104/141 (73%), Positives = 114/141 (80%)

Query:     3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
             WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct:    65 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 124

Query:    63 KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
             KCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +   
Sbjct:   125 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 184

Query:   123 ARPPTVQIKGQPVAQKSG-CC 142
             A    V+I+  PV Q  G CC
Sbjct:   185 AEKSNVKIQSTPVKQSGGGCC 205

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0003924 "GTPase activity" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q05974	RAB1A_LYMST	No assigned EC number	0.7163	0.9722	0.6829	N/A	no
Q6NYB7	RAB1A_RAT	No assigned EC number	0.7357	0.9722	0.6829	yes	no
Q05737	YPTM2_MAIZE	No assigned EC number	0.8873	0.9861	0.6995	N/A	no
P28188	RAD2A_ARATH	No assigned EC number	0.8943	0.9861	0.6995	yes	no
P11620	YPT1_SCHPO	No assigned EC number	0.6619	0.9722	0.6896	yes	no
P01123	YPT1_YEAST	No assigned EC number	0.6344	0.9652	0.6747	yes	no
P62820	RAB1A_HUMAN	No assigned EC number	0.7357	0.9722	0.6829	yes	no
P62821	RAB1A_MOUSE	No assigned EC number	0.7357	0.9722	0.6829	yes	no
P62822	RAB1A_CANFA	No assigned EC number	0.7357	0.9722	0.6829	yes	no
P34139	RAB1A_DICDI	No assigned EC number	0.6879	0.9722	0.6930	yes	no
P22125	RAB1_DIPOM	No assigned EC number	0.7304	0.9722	0.6930	N/A	no
Q39571	YPTC1_CHLRE	No assigned EC number	0.7801	0.9722	0.6896	N/A	no
Q52NJ2	RAB1A_PIG	No assigned EC number	0.7285	0.9722	0.6829	yes	no
P31584	YPTV1_VOLCA	No assigned EC number	0.7659	0.9722	0.6896	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	144
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	3e-81
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	1e-68
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-66
pfam00071	162	pfam00071, Ras, Ras family	4e-65
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-63
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	2e-52
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	1e-48
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	8e-48
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	7e-47
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	1e-45
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	8e-45
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-43
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	3e-42
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	7e-42
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	1e-41
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-41
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	3e-40
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	3e-40
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	4e-40
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	2e-39
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	7e-39
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	4e-37
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	8e-37
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	1e-36
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	7e-36
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	2e-35
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	6e-32
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	4e-31
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	6e-31
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	9e-31
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	4e-29
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	8e-29
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	1e-28
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	2e-28
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	3e-26
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	5e-26
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	6e-26
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	8e-25
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	1e-24
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	4e-24
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	1e-23
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	2e-23
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	6e-23
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	2e-22
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	3e-22
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	3e-22
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	5e-22
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	9e-22
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	2e-21
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	3e-21
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	5e-21
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	3e-20
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	4e-20
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	8e-20
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	9e-20
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	2e-19
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	8e-19
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	8e-19
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	1e-18
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	1e-18
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	3e-18
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	1e-16
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	6e-16
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	6e-16
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	8e-15
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	1e-14
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	6e-14
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	2e-13
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	3e-13
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	8e-12
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	1e-11
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	2e-11
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	3e-11
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	3e-11
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	6e-11
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	7e-10
pfam08477	116	pfam08477, Miro, Miro-like protein	5e-09
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	1e-08
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	2e-08
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	3e-08
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	4e-08
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	5e-08
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	1e-07
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	1e-07
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	2e-07
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	3e-07
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	1e-06
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	3e-06
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	3e-06
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	3e-06
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	3e-06
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	1e-05
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	1e-05
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	3e-05
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	3e-05
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	6e-05
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	2e-04
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	3e-04
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	5e-04
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	6e-04
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	6e-04
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	8e-04
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	0.001
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	0.002
COG1161	322	COG1161, COG1161, Predicted GTPases [General funct	0.002

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  236 bits (604), Expect = 3e-81
 Identities = 94/111 (84%), Positives = 100/111 (90%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 56  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 115

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           KCDLT  KVV Y  AK FADE+GIPF+ETSAK++TNVE+AFM MA  IK R
Sbjct: 116 KCDLTDKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREIKKR 166

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  204 bits (521), Expect = 1e-68
 Identities = 66/111 (59%), Positives = 87/111 (78%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTIT+SYYRGA GII+VYD+TD++SF N+K W+  ID +AS++V ++LVGN
Sbjct: 57  WDTAGQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGN 116

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           KCD+   +VVS E  +A A E GI F+ETSAK + NVE+AF+ +A  I  +
Sbjct: 117 KCDMEEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDILKK 167

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  199 bits (508), Expect = 1e-66
 Identities = 68/111 (61%), Positives = 85/111 (76%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR+ITSSYYRGA G ++VYD+T++ESF N++ WL E+  YAS NV  +LVGN
Sbjct: 54  WDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGN 113

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           K DL   + VS E A+AFA+E G+PF ETSAK +TNVE+AF  +A  I  R
Sbjct: 114 KSDLEEQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  195 bits (497), Expect = 4e-65
 Identities = 64/110 (58%), Positives = 81/110 (73%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR +   YYRGA G ++VYD+T ++SF NVK+WL EI R+A +NV  +LVGN
Sbjct: 53  WDTAGQERFRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGN 112

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112
           KCDL   +VVS E  +A A E+G+PFMETSAK + NVE+AF  +A  I  
Sbjct: 113 KCDLEDQRVVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  190 bits (486), Expect = 2e-63
 Identities = 64/105 (60%), Positives = 80/105 (76%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR+ITSSYYRGAHG I+VYDVT++ESF N+ +WLNE+  YA  N+  +LVGN
Sbjct: 54  WDTAGQERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGN 113

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 107
           K DL   + VS E A+ FA E G+ F ETSAK   NV++AF ++A
Sbjct: 114 KSDLEDERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLA 158

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  163 bits (414), Expect = 2e-52
 Identities = 58/108 (53%), Positives = 78/108 (72%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+R ITS+YYRGA G ++VYD+T + +F NV++WL E+  +A  N+  +LVGN
Sbjct: 57  WDTAGQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGN 116

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL   + V  E AKAFA++ G+ F+ETSA D TNVE+AF  +   I
Sbjct: 117 KSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  153 bits (389), Expect = 1e-48
 Identities = 57/109 (52%), Positives = 78/109 (71%), Gaps = 2/109 (1%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
           WDTAGQERFRT+TSSYYRGA G+I+VYDVT +++F+N+  WLNE+D Y+ + +  K+LVG
Sbjct: 54  WDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVG 113

Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           NK D   N+ V+ E  + FA +  + F+ETSAK    V+QAF  +   I
Sbjct: 114 NKIDK-ENREVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  151 bits (383), Expect = 8e-48
 Identities = 59/111 (53%), Positives = 84/111 (75%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++++ N+  +L+GN
Sbjct: 58  WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGN 117

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           KCDL + + VSYE  +AFA E G+ FMETSAK ++NVE+AF+  A  I D+
Sbjct: 118 KCDLESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYDK 168

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  149 bits (377), Expect = 7e-47
 Identities = 59/106 (55%), Positives = 77/106 (72%), Gaps = 1/106 (0%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTIT SYYR A+G II YD+T + SF +V  W+ E+++Y + NV  LL+GN
Sbjct: 57  WDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGN 116

Query: 63  KCDLTANKVVSYETAKAFADEIGIPF-METSAKDSTNVEQAFMAMA 107
           KCDL   + V +E A   A+  GI   +ETSAK+S+NVE+AF+ MA
Sbjct: 117 KCDLEEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMA 162

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  145 bits (369), Expect = 1e-45
 Identities = 51/108 (47%), Positives = 69/108 (63%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+R++   YYRGA   I+VYD+T +ESF   K W+ E+  +   N+   L GN
Sbjct: 55  WDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGN 114

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL + + VS E A+ +ADE G+ FMETSAK   NV + F  +A  +
Sbjct: 115 KADLESKRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKL 162

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  144 bits (366), Expect = 8e-45
 Identities = 65/140 (46%), Positives = 84/140 (60%), Gaps = 2/140 (1%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITS+YYRG HG+I+VYDVT+ ESF NVK+WL EI++   D+V K+LVGN
Sbjct: 60  WDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQ-NCDDVCKVLVGN 118

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           K D    KVV  E A  FA ++GI   ETSAK++ NVE+ F  +   +        +   
Sbjct: 119 KNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNLA-KQ 177

Query: 123 ARPPTVQIKGQPVAQKSGCC 142
            +     +   P   K    
Sbjct: 178 QQQQQNDVVKLPKNSKRKKR 197

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  140 bits (355), Expect = 2e-43
 Identities = 68/142 (47%), Positives = 92/142 (64%), Gaps = 7/142 (4%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR++T +YYR AH ++++YDVT++ SF+N++ WL EI  YA  +V  +L+GN
Sbjct: 55  WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGN 114

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           K D++  +VV  E  +  A E G+PFMETSAK   NVE AF A+A  +K R   QP    
Sbjct: 115 KADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRSVEQPD--- 171

Query: 123 ARPPTVQIKGQPVAQK--SGCC 142
              P  +I+     QK  SGCC
Sbjct: 172 --EPKFKIQDYVEKQKKSSGCC 191

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  138 bits (350), Expect = 3e-42
 Identities = 64/151 (42%), Positives = 97/151 (64%), Gaps = 9/151 (5%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV++WL E+  +A  N+  ++ GN
Sbjct: 66  WDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGN 125

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI-----KDRMASQ 117
           K DL   + V+ E  +A A++ G+ F+ETSA ++TNVE+AF  +   I     K  +A+Q
Sbjct: 126 KSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISKKALAAQ 185

Query: 118 PSMNNARPP----TVQIKGQPVAQKSGCCST 144
            +  N+  P    T+ +       K GCCST
Sbjct: 186 EAAANSGLPGQGTTINVADTSGNNKRGCCST 216

Length = 216

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  136 bits (344), Expect = 7e-42
 Identities = 57/111 (51%), Positives = 79/111 (71%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ DN   +LVGN
Sbjct: 55  WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGN 114

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           KCD+   +VVS E  +  AD++G  F E SAK++ NV+Q F  +   I D+
Sbjct: 115 KCDMEDERVVSAERGRQLADQLGFEFFEASAKENINVKQVFERLVDIICDK 165

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  137 bits (346), Expect = 1e-41
 Identities = 65/151 (43%), Positives = 90/151 (59%), Gaps = 11/151 (7%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +L+GN
Sbjct: 60  WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGN 119

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM------AS 116
           KCDL   + VS E  + FA E G+ FME SAK + NVE+AF+  AA I  ++       S
Sbjct: 120 KCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKIQDGVFDVS 179

Query: 117 QPSMN-----NARPPTVQIKGQPVAQKSGCC 142
             S        A P     +    +Q  GCC
Sbjct: 180 NESYGIKVGYGAIPGASGGRDGTSSQGGGCC 210

Length = 210

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  134 bits (340), Expect = 2e-41
 Identities = 46/108 (42%), Positives = 70/108 (64%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+  +   YYR A G I+VYD+TD +SF  VK+W+ E+ +   +N++ ++VGN
Sbjct: 54  WDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGN 113

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL   +VVS   A+ +A  +G    ETSAK    +E+ F+++A  +
Sbjct: 114 KIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  131 bits (332), Expect = 3e-40
 Identities = 56/108 (51%), Positives = 75/108 (69%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR++T SYYRGA G ++VYD+T +ESFN +  WL +    AS ++  +LVGN
Sbjct: 54  WDTAGQERFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGN 113

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL  ++ V++  A  FA E G+ F+ETSA    NVE+AF+  A SI
Sbjct: 114 KKDLEDDREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  132 bits (333), Expect = 3e-40
 Identities = 54/108 (50%), Positives = 79/108 (73%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR+IT SYYR A+ +I+ YD+T +ESF  + +WL EI++YA++ V  +LVGN
Sbjct: 61  WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGN 120

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL   + VS + A+ F+D   + ++ETSAK+S NVE+ F+ +A  +
Sbjct: 121 KIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  131 bits (332), Expect = 4e-40
 Identities = 45/108 (41%), Positives = 71/108 (65%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR++  SY R +   ++VYD+T+++SF+N  +W++++     ++V  +LVGN
Sbjct: 54  WDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGN 113

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL+  + VS E  +  A E    F+ETSAK   NV+Q F  +A ++
Sbjct: 114 KTDLSDKRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  129 bits (328), Expect = 2e-39
 Identities = 45/101 (44%), Positives = 62/101 (61%), Gaps = 1/101 (0%)

Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGN 62
           DTAGQE F  +   Y R   G I+VY +T +ESF  +K    +I R    ++V  +LVGN
Sbjct: 53  DTAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGN 112

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 103
           KCDL   + VS E  +A A+E G PF+ETSAK + N+++ F
Sbjct: 113 KCDLENERQVSTEEGEALAEEWGCPFLETSAKTNINIDELF 153

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  128 bits (324), Expect = 7e-39
 Identities = 55/108 (50%), Positives = 72/108 (66%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR +T SYYRGA G ++VYD+T + ++N++  WL +     + N    L+GN
Sbjct: 56  WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGN 115

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL A + V+YE AK FADE G+ F+E SAK   NVE AF+  A  I
Sbjct: 116 KADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKI 163

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  125 bits (315), Expect = 4e-37
 Identities = 53/113 (46%), Positives = 81/113 (71%), Gaps = 1/113 (0%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERF +ITS+YYR A GII+VYD+T +E+F+++ +W+  ID+YAS++   LLVGN
Sbjct: 54  WDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGN 113

Query: 63  KCDLTANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
           K D   ++ ++ +  + FA +I G+ F E SAKD+ NV++ F+ +   I  +M
Sbjct: 114 KLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 166

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  124 bits (314), Expect = 8e-37
 Identities = 51/121 (42%), Positives = 79/121 (65%), Gaps = 9/121 (7%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK----- 57
           WDTAGQERFR+IT SYYR + G+++V+D+T++ESF +V  WL E    A  ++       
Sbjct: 57  WDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEE----ARSHIQPHRPVF 112

Query: 58  LLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 117
           +LVG+KCDL + + V+ E A+  A ++G+ ++ETSA+   NVE+AF  +   I +R+   
Sbjct: 113 ILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRG 172

Query: 118 P 118
            
Sbjct: 173 E 173

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  124 bits (312), Expect = 1e-36
 Identities = 65/145 (44%), Positives = 84/145 (57%), Gaps = 4/145 (2%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASD-NVNKLLV 60
           WDTAGQERFRT+TSSYYR A GII+VYDVT +E+F N+   W  E++ Y+++ +  K+LV
Sbjct: 67  WDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLV 126

Query: 61  GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD--RMASQP 118
           GNK D  + + VS E   A A E G  F+E SAK   NVEQ F  +A  I +   +  + 
Sbjct: 127 GNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPSLLEEG 186

Query: 119 SMNNARPPTVQIKGQPVAQKSGCCS 143
           S    R    Q          GCCS
Sbjct: 187 STAVKRNILKQKPEHQPPPNGGCCS 211

Length = 211

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  121 bits (305), Expect = 7e-36
 Identities = 48/113 (42%), Positives = 77/113 (68%), Gaps = 1/113 (0%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
           WDTAGQERFR++T++++R A G ++++D+T ++SF NV+ W++++  +A  +N + +L+G
Sbjct: 68  WDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIVLIG 127

Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
           NK DL   + VS   A+  AD+ GIP+ ETSA    NVE+A   +   I  RM
Sbjct: 128 NKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 180

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  120 bits (302), Expect = 2e-35
 Identities = 48/122 (39%), Positives = 76/122 (62%), Gaps = 6/122 (4%)

Query: 1   MQ-WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNV 55
           +Q WDTAGQERF+++  ++YRGA   ++VYDVT+ +SF ++  W +E    AS    +N 
Sbjct: 51  LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENF 110

Query: 56  NKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIKDRM 114
             +++GNK DL   + VS + A+ +    G IP+ ETSAK++ NV+QAF  +A    ++ 
Sbjct: 111 PFVVLGNKIDLEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLALEQE 170

Query: 115 AS 116
             
Sbjct: 171 KE 172

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  111 bits (279), Expect = 6e-32
 Identities = 50/114 (43%), Positives = 73/114 (64%), Gaps = 5/114 (4%)

Query: 3   WDTAGQERFR-TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLV 60
           WDTAGQERFR ++   YYR  H ++ VYDVT+  SF+++  W+ E ++++  + V ++LV
Sbjct: 56  WDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILV 115

Query: 61  GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD---STNVEQAFMAMAASIK 111
           GNKCDL     V  + A+ FAD   +P  ETSAKD   + +VE  FM +A  +K
Sbjct: 116 GNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKLK 169

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  108 bits (273), Expect = 4e-31
 Identities = 47/111 (42%), Positives = 67/111 (60%), Gaps = 1/111 (0%)

Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGN 62
           DTAGQE F  +   Y R   G ++VY +TD++SF  + ++  +I R    D+V  +LVGN
Sbjct: 56  DTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGN 115

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           KCDL   +VVS E  K  A + G PF+ETSAK+  NV++AF  +   I+  
Sbjct: 116 KCDLENERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREIRKS 166

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  108 bits (272), Expect = 6e-31
 Identities = 48/109 (44%), Positives = 69/109 (63%), Gaps = 1/109 (0%)

Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGN 62
           DTAGQE F  +   Y R   G ++VY +TD++SF  +K++  +I R    D+V  +LVGN
Sbjct: 54  DTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGN 113

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           KCDL + +VVS E  K  A + G PF+ETSAK+  NV++AF  +   I+
Sbjct: 114 KCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR 162

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  108 bits (270), Expect = 9e-31
 Identities = 44/105 (41%), Positives = 69/105 (65%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER++TIT  YYR A GI +VYD++ + S+ ++ +W++++D YA + V K+L+GN
Sbjct: 54  WDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGN 113

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 107
           K D    + V  E     A E G+ F ETSA  + N++++F  + 
Sbjct: 114 KADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLT 158

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  104 bits (262), Expect = 4e-29
 Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 7/147 (4%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK----L 58
           WD AGQERF  +T  YY+GA G IIV+DVT   +F  V +W  ++D   +    +    L
Sbjct: 55  WDIAGQERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPAL 114

Query: 59  LVGNKCDL-TANKVVSYETAKAFADEIGIP-FMETSAKDSTNVEQAFMAMAASI-KDRMA 115
           L+ NKCDL         E    F  E G   + ETSAK++ N+E+A   +  +I K+   
Sbjct: 115 LLANKCDLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKNDKG 174

Query: 116 SQPSMNNARPPTVQIKGQPVAQKSGCC 142
            Q    +        +    ++   CC
Sbjct: 175 LQSPEPDEDNVIDLKQETTTSKSKSCC 201

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  104 bits (261), Expect = 8e-29
 Identities = 51/160 (31%), Positives = 72/160 (45%), Gaps = 19/160 (11%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
           WDTAGQE +R++   YYRGA+GI+IVYD T +ES + + + WL E+   A D+V  LLVG
Sbjct: 59  WDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVG 118

Query: 62  NKCDL------------TANKVVSYETAKAFADE---IGIPFMETSAKDST--NVEQAFM 104
           NK DL              N+ V        A          +ETSAK  T  NV + F 
Sbjct: 119 NKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFK 178

Query: 105 AMAASIKDRMASQP-SMNNARPPTVQIKGQPVAQKSGCCS 143
            +   + + +          +   +    +  A  S  C 
Sbjct: 179 ELLRKLLEEIEKLVLKNELRQLDRLNNPIEQAALASFNCV 218

Length = 219

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  102 bits (257), Expect = 1e-28
 Identities = 44/109 (40%), Positives = 63/109 (57%), Gaps = 1/109 (0%)

Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGN 62
           DTAGQE F  +   Y R   G ++V+ VTD+ SF  V ++  +I R    D    +LVGN
Sbjct: 56  DTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGN 115

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           K DL   + VS E  +  A ++ IP++ETSAKD  NV++AF  +   I+
Sbjct: 116 KADLEHQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVRVIR 164

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  103 bits (257), Expect = 2e-28
 Identities = 52/124 (41%), Positives = 77/124 (62%), Gaps = 9/124 (7%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDT+GQ RF TI  SY RGA GII+VYD+T++ SF+ + +W+ EID +A   V K+LVGN
Sbjct: 60  WDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVGN 118

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           +  L   + V+ E A+A+A+  G+ F E S   + N+ ++F  +A     R+     M +
Sbjct: 119 RLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELA-----RIV---LMRH 170

Query: 123 ARPP 126
            RPP
Sbjct: 171 GRPP 174

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 96.9 bits (242), Expect = 3e-26
 Identities = 51/140 (36%), Positives = 72/140 (51%), Gaps = 17/140 (12%)

Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGN 62
           DTAGQ+ +  +   Y  G HG I+VY VT ++SF  VK   ++I D    ++V  +LVGN
Sbjct: 55  DTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGN 114

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           K DL   + VS E  K  A+  G  F+E+SAK++ NVE+AF  +   I+        + N
Sbjct: 115 KSDLHMERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEIE-------KVEN 167

Query: 123 ARPPTVQIKGQPVAQKSGCC 142
                      P  QKS C 
Sbjct: 168 ---------PLPPGQKSKCS 178

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 95.6 bits (238), Expect = 5e-26
 Identities = 42/109 (38%), Positives = 62/109 (56%), Gaps = 2/109 (1%)

Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGN 62
           DTAGQE +  +   Y R   G + V+ +  ++SF ++  +  +I R   SD+V  +LVGN
Sbjct: 55  DTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGN 114

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           KCDL A + VS    +  A   GIP++ETSAK    VE+AF  +   I+
Sbjct: 115 KCDL-AARTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREIR 162

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 95.6 bits (238), Expect = 6e-26
 Identities = 45/109 (41%), Positives = 66/109 (60%), Gaps = 1/109 (0%)

Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGN 62
           DTAGQE +  I  +Y+R   G ++V+ +TD ESF  + ++  +I R    DNV  LLVGN
Sbjct: 54  DTAGQEDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGN 113

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           KCDL   + VS E A   A++ G+ ++ETSAK   NV++ F  +   I+
Sbjct: 114 KCDLEDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREIR 162

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 92.5 bits (230), Expect = 8e-25
 Identities = 44/108 (40%), Positives = 62/108 (57%), Gaps = 1/108 (0%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLV 60
           M WDTAGQE F  IT +YYRGA   I+V+  TD+ESF  ++ W  +++    D +  +LV
Sbjct: 54  MLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGD-IPMVLV 112

Query: 61  GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA 108
             K DL    V++ E A+A A  + +P   TS KD  NV + F  +A 
Sbjct: 113 QTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE 160

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 92.2 bits (229), Expect = 1e-24
 Identities = 41/102 (40%), Positives = 61/102 (59%), Gaps = 1/102 (0%)

Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGN 62
           DTAG E+F ++   Y +   G I+VY + +Q++F ++K   ++I R    + V  +LVGN
Sbjct: 55  DTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGN 114

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM 104
           K DL + + VS    +A A+E G PFMETSAK  T V + F 
Sbjct: 115 KVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFA 156

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 91.9 bits (228), Expect = 4e-24
 Identities = 46/144 (31%), Positives = 68/144 (47%), Gaps = 9/144 (6%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAG ER+  ++  YYRGA   I+ YD+TD  SF   K W+ E+ +   ++    L G 
Sbjct: 55  WDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKEL-QNLEEHCKIYLCGT 113

Query: 63  KCDLTAN----KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 118
           K DL       + V +   + FADEI     ETS+K   NV++ F  +A     R  +Q 
Sbjct: 114 KSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRANNQM 173

Query: 119 SMNNARPPTVQIKGQPVAQKSGCC 142
           +        V +  +  +    CC
Sbjct: 174 NTEKG----VDLGQKKNSYFYSCC 193

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 89.9 bits (224), Expect = 1e-23
 Identities = 37/114 (32%), Positives = 51/114 (44%), Gaps = 14/114 (12%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y      ++ + V    SF NVK  W  EI  Y   NV  +LVG
Sbjct: 53  WDTAGQEEYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCP-NVPIILVG 111

Query: 62  NKCDL-----------TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL              K ++ E  +  A EIG + +ME SA     +++ F
Sbjct: 112 TKIDLRDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVF 165

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 89.5 bits (222), Expect = 2e-23
 Identities = 45/111 (40%), Positives = 66/111 (59%), Gaps = 7/111 (6%)

Query: 1   MQ-WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNK- 57
           +Q WDTAGQERFR++ + +YRG+   ++ + V D +SF N+  W  E   YA        
Sbjct: 56  LQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 115

Query: 58  --LLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMA 105
             +++GNK D+   + VS E A+A+  + G  P+ ETSAKD+TNV  AF  
Sbjct: 116 PFVILGNKIDIP-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEE 165

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 88.0 bits (218), Expect = 6e-23
 Identities = 40/110 (36%), Positives = 63/110 (57%), Gaps = 5/110 (4%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERF+T+ +SYY  AH  I+V+DVT + ++ N+ +W  E+  Y    +  ++V N
Sbjct: 54  WDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREY-RPEIPCIVVAN 112

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM-AMAASIK 111
           K DL  +     +    FA++  +P    SA D TNV + F  A+  ++ 
Sbjct: 113 KIDLDPSVT---QKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVS 159

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 87.2 bits (216), Expect = 2e-22
 Identities = 43/109 (39%), Positives = 60/109 (55%), Gaps = 1/109 (0%)

Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGN 62
           DTAGQE +  +   Y R   G + VY +T + SF  +  +  +I R    D V  +LVGN
Sbjct: 59  DTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGN 118

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           KCDL + + VS    +  A   GIPF+ETSAK   NV++AF  +   I+
Sbjct: 119 KCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIR 167

Length = 189

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 86.0 bits (213), Expect = 3e-22
 Identities = 40/108 (37%), Positives = 61/108 (56%), Gaps = 1/108 (0%)

Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGN 62
           DTAG E+F  +   Y +   G ++VY +T Q +FN+++    +I R   +++V  +LVGN
Sbjct: 55  DTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 114

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           KCDL   +VV  E  +  A + G  F+ETSAK   NV + F  +   I
Sbjct: 115 KCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 86.1 bits (213), Expect = 3e-22
 Identities = 43/109 (39%), Positives = 64/109 (58%), Gaps = 2/109 (1%)

Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGN 62
           DTAG E+F  +   Y +   G  +VY +T Q+SFN+++    +I R   +++V  +LVGN
Sbjct: 55  DTAGTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGN 114

Query: 63  KCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASI 110
           KCDL   +VVS E  +  A + G  PF+ETSAK   NV++ F  +   I
Sbjct: 115 KCDLEDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 86.0 bits (212), Expect = 5e-22
 Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 2/141 (1%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR++  SY R +   I+VYD+T+++SF N  +W+ +I      +V   LVGN
Sbjct: 34  WDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGN 93

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           K DL   + V+YE     A E    F ETSAK   N++  F  +AA + +      + N+
Sbjct: 94  KTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN--LDNSNSND 151

Query: 123 ARPPTVQIKGQPVAQKSGCCS 143
           A    +Q+     A      S
Sbjct: 152 ANVVDIQLTNNSNANDKNMLS 172

Length = 176

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 85.1 bits (211), Expect = 9e-22
 Identities = 33/113 (29%), Positives = 62/113 (54%), Gaps = 5/113 (4%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-----ASDNVNK 57
           +D +G   +  + + +Y+   G+++VYDVTD++SF  +  WL E+ +        +N+  
Sbjct: 54  FDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVV 113

Query: 58  LLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           ++  NK DLT ++ VS +  + +A+  G  + ETSA     V + F  + +SI
Sbjct: 114 VVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 84.9 bits (210), Expect = 2e-21
 Identities = 39/111 (35%), Positives = 63/111 (56%), Gaps = 3/111 (2%)

Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDN---VNKLLV 60
           DTAGQE +  +   + R   G I+VY +T + +F  V+++  +I R   ++   V  ++V
Sbjct: 53  DTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIV 112

Query: 61  GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           GNKCD    + VS E   A A  +G  F+E SAK + NVE+AF  +  +++
Sbjct: 113 GNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALR 163

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 83.7 bits (207), Expect = 3e-21
 Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 8/111 (7%)

Query: 3   WDTAGQERF-----RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK 57
            DT G + F       +     RGA  I++V D TD+ES  + K  L  + R   + +  
Sbjct: 52  VDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAK--LLILRRLRKEGIPI 109

Query: 58  LLVGNKCDLTANKVVSYET-AKAFADEIGIPFMETSAKDSTNVEQAFMAMA 107
           +LVGNK DL   + V      +  A  +G+P  E SAK    V++ F  + 
Sbjct: 110 ILVGNKIDLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLI 160

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 83.4 bits (207), Expect = 5e-21
 Identities = 38/115 (33%), Positives = 53/115 (46%), Gaps = 15/115 (13%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y      +I + V    SF NVK +W  E+  +   NV  +LVG
Sbjct: 51  WDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP-NVPIILVG 109

Query: 62  NKCDLTANKV------------VSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K             V+YE  +A A  IG + ++E SA     V + F
Sbjct: 110 TKLDLRNDKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVF 164

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 81.1 bits (200), Expect = 3e-20
 Identities = 43/109 (39%), Positives = 59/109 (54%), Gaps = 3/109 (2%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE-IDRYASDNVNKLLVG 61
           WDTAGQERF+ I S+YYRGA  IIIV+D+TD  S  + +QWL + +      +V   LVG
Sbjct: 54  WDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVG 113

Query: 62  NKCDLTANKVVSYETAKA--FADEIGIPFMETSAKDSTNVEQAFMAMAA 108
            K DL++    +     A   A E+   +   SA    NV   F  +A+
Sbjct: 114 TKKDLSSPAQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVAS 162

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 80.6 bits (199), Expect = 4e-20
 Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 3/108 (2%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK--LLV 60
           +D+AGQE F  +  + +     + +VYDVT++ SFNN  +W+N + R  S  ++   +LV
Sbjct: 58  FDSAGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRV-RTHSHGLHTPGVLV 116

Query: 61  GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA 108
           GNKCDLT  + V    A+A A    + F ETSAK+    E  F+++A 
Sbjct: 117 GNKCDLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 79.8 bits (197), Expect = 8e-20
 Identities = 40/102 (39%), Positives = 60/102 (58%), Gaps = 2/102 (1%)

Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGN 62
           DTAG E+F  +   Y +   G ++VY VT + S N + +   ++ R   SDNV  +LVGN
Sbjct: 55  DTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGN 114

Query: 63  KCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
           K DL  ++ VS E   + + + G +PF ETSA+  TNV++ F
Sbjct: 115 KADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVF 156

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 79.7 bits (197), Expect = 9e-20
 Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 3/105 (2%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQE+F  +   YY      II++DVT + ++ NV  W  ++ R   +N+  +L GN
Sbjct: 54  WDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 112

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 107
           K D+   KV        F  +  + + E SAK + N E+ F+ +A
Sbjct: 113 KVDIKDRKV--KPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLA 155

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 79.1 bits (195), Expect = 2e-19
 Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 2/118 (1%)

Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGN 62
           DTAGQ  F  +   Y R   G II Y VTD+ SF    ++   I R   ++++  +LVGN
Sbjct: 56  DTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGN 115

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSM 120
           K DL   + V+ E  +  A E   PF ETSA     ++ AF  +   I+ R  S P++
Sbjct: 116 KVDLEQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIR-RKESMPAL 172

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 77.3 bits (191), Expect = 8e-19
 Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 5/106 (4%)

Query: 3   WDTAGQERFRT--ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD--NVNKL 58
            DT GQ++           R A G ++VY +TD+ SF+ V Q L  I         +  +
Sbjct: 52  QDTPGQQQNEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVI 111

Query: 59  LVGNKCDLTANKVVSYETAKAFADEIGIPFMETSA-KDSTNVEQAF 103
           LVGNK DL  ++ VS E  +  A E+G  F E SA ++   V+  F
Sbjct: 112 LVGNKADLLHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVF 157

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 77.0 bits (190), Expect = 8e-19
 Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 3/103 (2%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTD-QESFNNVKQ-WLNEIDRYASDNVNKLLV 60
            DTAGQE +  I   YYR     + V+D+         + +    EI  +A   V  +LV
Sbjct: 56  LDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILV 115

Query: 61  GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 103
           GNK DL   K +    A  FA   G P +  SA+   N++ AF
Sbjct: 116 GNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 78.2 bits (193), Expect = 1e-18
 Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 20/144 (13%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQE+F  +   YY      II++DVT + ++ NV  W  +I R   +N+  +LVGN
Sbjct: 63  WDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVR-VCENIPIVLVGN 121

Query: 63  KCDLTANKVVSYETAKA----FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 118
           K D+   +V      KA    F  +  + + + SAK + N E+ F+ +A     R+ + P
Sbjct: 122 KVDVKDRQV------KARQITFHRKKNLQYYDISAKSNYNFEKPFLWLAR----RLTNDP 171

Query: 119 SMN-----NARPPTVQIKGQPVAQ 137
           ++         P  +QI  + VAQ
Sbjct: 172 NLVFVGAPALAPEEIQIDPELVAQ 195

Length = 215

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 77.4 bits (191), Expect = 1e-18
 Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 22/133 (16%)

Query: 3   WDTAGQE---RFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKL 58
           WDTAGQE   R R ++   Y     I+I Y V +  S +NV+ +W  E++ +       +
Sbjct: 57  WDTAGQEDYDRLRPLS---YPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFC-PGTPIV 112

Query: 59  LVGNKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF-M 104
           LVG K DL  +K             V+ E  ++ A  IG + ++E SAK   NV++ F  
Sbjct: 113 LVGLKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDA 172

Query: 105 AMAASIKDRMASQ 117
           A+  ++     + 
Sbjct: 173 AINVALSKSGRAA 185

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 76.8 bits (189), Expect = 3e-18
 Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 3/111 (2%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LL 59
           WD  GQ+    +   Y  GA  + +VYD+T+ +SF N++ WL+ + +   ++  K   +L
Sbjct: 55  WDIGGQQIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVL 114

Query: 60  VGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           VGNK DL  N+ V+ E    FA E  +  +  SAK    V   F  +AA +
Sbjct: 115 VGNKTDLEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAEL 165

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 73.0 bits (179), Expect = 1e-16
 Identities = 47/178 (26%), Positives = 71/178 (39%), Gaps = 44/178 (24%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAG+E+F  + S Y RGA  +I+ YDV++ +S   ++     +   A+++    +VGN
Sbjct: 49  WDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGN 108

Query: 63  KCDLT-------------------ANKVVSYETAKAFADEI--------------GIPFM 89
           K DLT                     + V+ E AKAF   I                   
Sbjct: 109 KLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCF 168

Query: 90  ETSAKDSTNVEQAF-----MAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC 142
           ETSAK   NV++ F     + +   +  R  +  +      P       P   KS CC
Sbjct: 169 ETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTVNLP------NPKRSKSKCC 220

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 70.9 bits (174), Expect = 6e-16
 Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 20/137 (14%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQE+F  +   YY      II++DVT + ++ NV  W  ++ R   +N+  +L GN
Sbjct: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGN 125

Query: 63  KCDLTANKV----VSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 118
           K D+   +V    V++   K       + + E SAK + N E+ F+ +A     ++A  P
Sbjct: 126 KVDVKNRQVKAKQVTFHRKK------NLQYYEISAKSNYNFEKPFLYLAR----KLAGDP 175

Query: 119 SMN-----NARPPTVQI 130
           +++        PP VQI
Sbjct: 176 NLHFVESPALAPPEVQI 192

Length = 219

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 69.9 bits (171), Expect = 6e-16
 Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 3/103 (2%)

Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LLV 60
           DT G  +F  +        H  I+VY +T ++S   +K     I     +N+ K   +LV
Sbjct: 55  DTTGSHQFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLV 114

Query: 61  GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 103
           GNKCD + ++ VS     A A      FMETSAK + NV++ F
Sbjct: 115 GNKCDESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 67.2 bits (164), Expect = 8e-15
 Identities = 47/151 (31%), Positives = 62/151 (41%), Gaps = 29/151 (19%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE F  + S  Y   H I++ + V + +S  NV+ +WL EI  +    V  +LV 
Sbjct: 53  WDTAGQEEFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHC-PGVKLVLVA 111

Query: 62  NKCDLTAN--------KVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIKD 112
            KCDL             +SYE   A A  I    ++E SAK +  V +AF   A     
Sbjct: 112 LKCDLREPRNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAARVAL- 170

Query: 113 RMASQPSMNNARPPTVQIKGQPVAQKSGCCS 143
                    NARPP              C  
Sbjct: 171 ---------NARPPH--------PHSRACTI 184

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 67.0 bits (163), Expect = 1e-14
 Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 4/136 (2%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQE+F  +   YY      II++DVT + ++ NV  W  ++ R   +N+  +L GN
Sbjct: 49  WDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVR-VCENIPIVLCGN 107

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMN 121
           K D+   KV +      F  +  + + + SAK + N E+ F+ +A   I D      +M 
Sbjct: 108 KVDVKDRKVKAKSI--TFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 165

Query: 122 NARPPTVQIKGQPVAQ 137
              PP V +     AQ
Sbjct: 166 ALAPPEVVMDPALAAQ 181

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 64.7 bits (158), Expect = 6e-14
 Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 15/115 (13%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
            DTAGQ+ F  +    Y      ++ + V +  SF N+  +W+ EI ++ +     +LVG
Sbjct: 53  CDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH-NPKAPIILVG 111

Query: 62  NKCDLTAN------------KVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            + DL  +            K VS   AKA A++IG   ++E SA    N+++ F
Sbjct: 112 TQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 64.3 bits (157), Expect = 2e-13
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 2/124 (1%)

Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGN 62
           D   QE    +  S  +     +IVY VTD+ SF    +   ++ R   ++++  +LVGN
Sbjct: 55  DHWEQEDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGN 114

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           K DL  ++ VS +  +A A      F+ETSA    NV++ F  +   ++ R  S+   N 
Sbjct: 115 KSDLVRSREVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIVRQVRLRRDSKE-KNT 173

Query: 123 ARPP 126
            R  
Sbjct: 174 RRMA 177

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 63.3 bits (154), Expect = 3e-13
 Identities = 40/115 (34%), Positives = 55/115 (47%), Gaps = 13/115 (11%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y  AH I+I + +   +S  NV+  W+ E+ RY   NV  +LVG
Sbjct: 54  WDTAGQEEYERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCP-NVPVILVG 112

Query: 62  NKCDL----------TANKVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMA 105
            K DL            ++ V  + AK  A  IG   +ME SA     V+  F A
Sbjct: 113 LKKDLRQEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEA 167

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 58.7 bits (143), Expect = 8e-12
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI---DRYASDNVNKLL 59
           WD  GQ++ R +   YY    G+I V D +D+E     K  L+++   +         L+
Sbjct: 48  WDVGGQDKIRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEEL--KGAPLLI 105

Query: 60  VGNKCDL 66
           + NK DL
Sbjct: 106 LANKQDL 112

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 59.1 bits (143), Expect = 1e-11
 Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 12/135 (8%)

Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDN-VNKLLVGN 62
           DT+G   F  +     +      +VY V D ESF  VK+   EI     D  V  ++VGN
Sbjct: 53  DTSGSYSFPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGN 112

Query: 63  KCDLTANKVVSYETAKAFAD-EIGIPFMETSAKDSTNVEQAFMAMAA----------SIK 111
           K D  A + V    A +  + +    F+E SAKD+ NV + F  +            +++
Sbjct: 113 KIDSLAERQVEAADALSTVELDWNNGFVEASAKDNENVTEVFKELLQQANLPSWLSPALR 172

Query: 112 DRMASQPSMNNARPP 126
            R  S PS    RPP
Sbjct: 173 RRRESAPSEIQRRPP 187

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 58.2 bits (141), Expect = 2e-11
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 21/118 (17%)

Query: 3   WDTAGQE---RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKL 58
           WDTAGQE   R R ++   Y     I++ + +   +S  N+ + W  E+  +   NV  +
Sbjct: 54  WDTAGQEDYDRLRPLS---YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPII 109

Query: 59  LVGNKCDL------------TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
           LVGNK DL               + V  E  +A A++IG   ++E SAK    V + F
Sbjct: 110 LVGNKKDLRNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVF 167

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 57.9 bits (140), Expect = 3e-11
 Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 13/115 (11%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    YRGA   ++ + +  + S+ NV K+W+ E+  YA   V  +LVG
Sbjct: 54  WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAP-GVPIVLVG 112

Query: 62  NKCDLTANK--------VVSYETAKA--FADEIGIP-FMETSAKDSTNVEQAFMA 105
            K DL  +K         V   TA+      +IG   ++E S+K   NV+  F A
Sbjct: 113 TKLDLRDDKQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDA 167

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 57.7 bits (140), Expect = 3e-11
 Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 8/109 (7%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLL 59
           M WD  GQE  R++   YY  +HG+I V D TD+E FN  K    ++    + + V  L+
Sbjct: 54  MFWDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLV 113

Query: 60  VGNKCDLTANKVVSYETAKAFAD---EIG---IPFMETSAKDSTNVEQA 102
           + NK DL  + +   E  + F D    IG         SA +   VE+ 
Sbjct: 114 LANKQDLP-DALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEG 161

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 57.1 bits (138), Expect = 6e-11
 Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 17/124 (13%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDT+G   +  +    Y  +  ++I +D++  E+ ++V K+W  E+  +   N   LLVG
Sbjct: 54  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCP-NTPVLLVG 112

Query: 62  NKCDLT---------ANKV---VSYETAKAFADEIG-IPFMETSAKDSTN-VEQAF-MAM 106
            K DL          +NK    VS+E  +  A +IG   ++E SAK S N V   F MA 
Sbjct: 113 CKSDLRTDLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFEMAT 172

Query: 107 AASI 110
            A +
Sbjct: 173 LACL 176

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 53.9 bits (130), Expect = 7e-10
 Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 6/104 (5%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE-IDRYASDNVNKLLVG 61
           WD  GQ RFR++   Y RG + I+ V D  D+E     K  L++ +++ + + +  L++G
Sbjct: 49  WDLGGQPRFRSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLG 108

Query: 62  NKCDL----TANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ 101
           NK DL    + ++++     K+  D     +   SAK+ TN++ 
Sbjct: 109 NKNDLPGALSVDELIEQMNLKSITDREVSCYS-ISAKEKTNIDI 151

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 50.5 bits (121), Expect = 5e-09
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFN---NVKQWLNEIDRYASDNVNKLL 59
           WD  G+E  +     + + A  I++VYD+TD+ES N    +  WL  + +     +  +L
Sbjct: 53  WDFGGREELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGG-KIPVIL 111

Query: 60  VGNKC 64
           VGNK 
Sbjct: 112 VGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 50.8 bits (121), Expect = 1e-08
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 15/110 (13%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDT+G   +  +    Y  +  ++I +D++  E+ ++V K+W  EI  +   N   LLVG
Sbjct: 58  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVG 116

Query: 62  NKCDLTANKV------------VSYETAKAFADEIG-IPFMETSAKDSTN 98
            K DL  +              VSY+     A +IG   ++E SA  S N
Sbjct: 117 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 166

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 17/130 (13%)

Query: 26  IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKL---------LVGNKCDLTANKVV-SYE 75
           I+V+ + ++ESF  V +   +I    S   NK          + GNK D    + V   E
Sbjct: 76  ILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDE 135

Query: 76  TAKAFADEIGIPFMETSAKDSTNVEQAFMAMA--ASIKDRMASQPSMNNARPPTVQIKGQ 133
             +    +    + E SAK ++N+++ F A+   A + + M+  PS++  R  +VQ  G 
Sbjct: 136 VEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAKLPNEMS--PSLH--RKISVQY-GD 190

Query: 134 PVAQKSGCCS 143
            + +KS   S
Sbjct: 191 ALHKKSRGGS 200

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WD  GQ  F  +     + A  I+ ++D+T + + N++K+W  +  R  +     +LVG 
Sbjct: 54  WDLGGQREFINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQA-RGFNKTAIPILVGT 112

Query: 63  KCDLTANKVVSY-----ETAKAFADEIGIPFMETSAKDSTNVEQAF 103
           K DL A+          + A+ +A  +  P +  S   S NV++ F
Sbjct: 113 KYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIF 158

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 49.0 bits (117), Expect = 4e-08
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 15/115 (13%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y      +I + +    SF NV+ +W  E+  +   N   +LVG
Sbjct: 54  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVG 112

Query: 62  NKCDLTANKV------------VSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 113 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 167

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 49.0 bits (117), Expect = 5e-08
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDN--VNKLLV 60
           WD  GQE+ R +  SY R   GI+ V D  D E     K  L++I ++ S+N  V  L++
Sbjct: 57  WDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKF-SENQGVPVLVL 115

Query: 61  GNKCDL 66
            NK DL
Sbjct: 116 ANKQDL 121

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 48.5 bits (115), Expect = 1e-07
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 15/115 (13%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  + +  Y   +  II + +    S+ NV+ +W  E+  +   NV  LLVG
Sbjct: 56  WDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP-NVPILLVG 114

Query: 62  NKCDLTANKVV------------SYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +               + +   A A +I  + ++E SA +   V++ F
Sbjct: 115 TKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVF 169

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LL 59
           WD  GQE  R+  ++YY     +I+V D TD+E     K+ L ++   A +++ K   L+
Sbjct: 64  WDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKM--LAHEDLRKAVLLV 121

Query: 60  VGNKCDL 66
           + NK DL
Sbjct: 122 LANKQDL 128

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 15/119 (12%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVG 61
           +D  G E+ R +   Y+    GI+ + D  D E F   K+ L+ + +     NV  L++G
Sbjct: 68  FDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPILILG 127

Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMET-----SAKDSTNVEQA-FMAMAASIKDRM 114
           NK D      VS E  +   + +G+    T     S K S       FM    S+  R 
Sbjct: 128 NKIDKP--GAVSEEELR---EALGLYGTTTGKGGVSLKVSNIRPVEVFM---CSVVKRQ 178

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 18/111 (16%)

Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGN 62
           DT+ + + R   ++  R A+ I +VY V    +   ++ +WL  I R     V  +LVGN
Sbjct: 55  DTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGN 113

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFM----------ETSAKDSTNVEQAF 103
           K DL            A  +E  +P M          E SAK   NV + F
Sbjct: 114 KSDLRDGSSQ------AGLEEEMLPIMNEFREIETCVECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLV 60
           WD  GQ++ R +   YY    G+I V D  D++  +  ++ L+ +  +    D V  L+ 
Sbjct: 62  WDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAV-ILVF 120

Query: 61  GNKCDL 66
            NK DL
Sbjct: 121 ANKQDL 126

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 44.6 bits (105), Expect = 3e-06
 Identities = 35/126 (27%), Positives = 51/126 (40%), Gaps = 33/126 (26%)

Query: 3   WDTAG-QERFRTITSSYYRGAHG----IIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVN 56
           WDT G  ++ R       R A+G    +++ + +    S  NVK  W  EI  +    V 
Sbjct: 71  WDTFGDHDKDR-------RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPR-VP 122

Query: 57  KLLVGNKCDL-------------------TANKVVSYETAKAFADEIGIPFMETSAKDST 97
            +LVG K DL                       ++  ET +A A E+GIP+ ETS     
Sbjct: 123 VILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQF 182

Query: 98  NVEQAF 103
            V+  F
Sbjct: 183 GVKDVF 188

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 44.1 bits (105), Expect = 3e-06
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI---DRYASDNVNKLL 59
           WD  GQE  R +  +Y+     +I V D  D++     K+ L+ +   +  A  +   L+
Sbjct: 63  WDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELA--DAPLLI 120

Query: 60  VGNKCDLT 67
           + NK DL 
Sbjct: 121 LANKQDLP 128

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 7/68 (10%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD----NVNKL 58
           WD  GQ++ R +   YY+  +G+I V D  D+E   + ++   E++R  S+    +   L
Sbjct: 66  WDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDARE---ELERMLSEDELRDAVLL 122

Query: 59  LVGNKCDL 66
           +  NK DL
Sbjct: 123 VFANKQDL 130

Length = 182

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 5/67 (7%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLV 60
           WD  GQ++ R +   YY G  G+I V D  D++  +  +Q L+ I  DR   D +  LLV
Sbjct: 58  WDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDAL--LLV 115

Query: 61  -GNKCDL 66
             NK DL
Sbjct: 116 FANKQDL 122

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 15/115 (13%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           +DTAGQE +  +    Y      +I + V +  SF NVK +W+ E+  YA  NV  LL+G
Sbjct: 53  YDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPYLLIG 111

Query: 62  NKCDLTAN------------KVVSYETAKAFADEIGIP-FMETSAKDSTNVEQAF 103
            + DL  +            K ++ E  +  A EIG   ++E SA     ++  F
Sbjct: 112 TQIDLRDDPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVF 166

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLV 60
           WD  GQ++ R +   Y++   G+I V D  D+E     ++ L  +  +    D V  LLV
Sbjct: 49  WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAV--LLV 106

Query: 61  -GNKCDL 66
             NK DL
Sbjct: 107 FANKQDL 113

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 18/134 (13%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASDNVNKLLVG 61
           WDT+G   +  +    Y  +  +++ +D++  E F++ +K+W  EI  Y   +   LL+G
Sbjct: 66  WDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCP-STRILLIG 124

Query: 62  NKCDLTAN------------KVVSYETAKAFADEIGIP-FMETSAKDSTNVEQAFMAMAA 108
            K DL  +              +SYE   A A ++G   ++E SA  S     +    A+
Sbjct: 125 CKTDLRTDLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTAS 184

Query: 109 SI---KDRMASQPS 119
            +   K    ++ S
Sbjct: 185 LLCINKLSPLAKKS 198

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 12/78 (15%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDN-------- 54
           WD +G ER++   S +Y   +G+I V+D++ + +  ++++W +E+    + +        
Sbjct: 88  WDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGP 147

Query: 55  ----VNKLLVGNKCDLTA 68
               V  +++GNK D+  
Sbjct: 148 GGLPVPYIVIGNKADIAP 165

Length = 334

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 40.6 bits (95), Expect = 6e-05
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 15/115 (13%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
           +DTAGQE +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG
Sbjct: 54  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVG 112

Query: 62  NKCDL------------TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            + DL               K ++ ET +  A ++  + ++E SA     ++  F
Sbjct: 113 TQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVF 167

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 13/117 (11%)

Query: 3   WDTAGQERFRTITSSYYRGAHGI-IIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 61
           WD  GQE +   T  ++  +  + ++V+D+   +  + V  WL +I  +   +   +LVG
Sbjct: 56  WDFGGQEIYHA-THQFFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGGVSP-VILVG 113

Query: 62  NKCD-LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 117
              D      ++     K F   I       S K+   +        A +K  +A +
Sbjct: 114 THIDESCDEDILKKALNKKFPAIIND-IHFVSCKNGKGI--------AELKKAIAKE 161

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 16/147 (10%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDT+G   +  +    Y  +  ++I +D++  E+ ++V K+W  E   +   N   +LVG
Sbjct: 54  WDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCP-NAKLVLVG 112

Query: 62  NKCDLTANKV------------VSYETAKAFADEIG-IPFMETSAKDSTN-VEQAFMAMA 107
            K D+  +              V++E     A ++G + ++E S++ S N V   F    
Sbjct: 113 CKLDMRTDLSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTT 172

Query: 108 ASIKDRMASQPSMNNARPPTVQIKGQP 134
            +   R       + +R    +I  QP
Sbjct: 173 LASVRREHPSLKRSTSRRGLKRISQQP 199

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK----QWLNEIDRYASDNVNKLL 59
           D +GQ ++R +   YY+   GII V D +D+      K      LN  D      +  L 
Sbjct: 51  DMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPD-IKHRRIPILF 109

Query: 60  VGNKCDL----TANKVVSY 74
             NK DL    TA K+   
Sbjct: 110 YANKMDLPDALTAVKITQL 128

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 37.8 bits (88), Expect = 6e-04
 Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 5/100 (5%)

Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNK 63
            T GQERF+ +     RGA G I++ D +   +F+  +  + +    + + +  ++  NK
Sbjct: 74  GTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEE--IIDFLT-SRNPIPVVVAINK 130

Query: 64  CDLTANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQA 102
            DL  + +   +  +A   E+  +P +E  A +       
Sbjct: 131 QDL-FDALPPEKIREALKLELLSVPVIEIDATEGEGARDQ 169

Length = 187

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 38.0 bits (88), Expect = 6e-04
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 23/90 (25%)

Query: 3   WDTAGQ----ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI----------- 47
           WD  G     E  ++  + +Y   +GII V+D+T+++S  N+ +W  E            
Sbjct: 59  WDVGGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEALNRDTFPAGLL 118

Query: 48  --------DRYASDNVNKLLVGNKCDLTAN 69
                   +++A + V  L++G K D    
Sbjct: 119 VTNGDYDSEQFAGNPVPLLVIGTKLDQIPE 148

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 37.0 bits (86), Expect = 8e-04
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVG 61
           WD  GQE+ RT+   Y     G++ V D +D+   +  ++ L  I +      V  +L+ 
Sbjct: 49  WDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLA 108

Query: 62  NKCDL 66
           NK DL
Sbjct: 109 NKQDL 113

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVG 61
           WD  GQ + R    +Y+     +I V D  D++ F    Q L E+ +      V  L+  
Sbjct: 64  WDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFA 123

Query: 62  NKCDL 66
           NK DL
Sbjct: 124 NKQDL 128

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 7/68 (10%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK----L 58
           WD  GQ++ R +   Y++   G+I V D  D++     +   +E+ R  +++  +    L
Sbjct: 66  WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEAR---DELHRMLNEDELRDAVLL 122

Query: 59  LVGNKCDL 66
           +  NK DL
Sbjct: 123 VFANKQDL 130

Length = 181

>gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only]

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 29/129 (22%), Positives = 44/129 (34%), Gaps = 13/129 (10%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLV 60
           +QW     ++ +       +    ++ V D  D     N      E++R   +   KLLV
Sbjct: 14  IQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP-----ELERIVKEKP-KLLV 67

Query: 61  GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVE----QAFMAMAASIKD--RM 114
            NK DL A K V+ +  K F  E GI  +  SAK     +             IK   + 
Sbjct: 68  LNKADL-APKEVTKKWKKYFKKEEGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKK 126

Query: 115 ASQPSMNNA 123
                    
Sbjct: 127 GLLKRKIRV 135

Length = 322

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	144
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.97
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.97
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.97
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.97
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.96
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.96
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.96
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.96
KOG0394	210	consensus Ras-related GTPase [General function pre	99.96
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.96
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.96
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.96
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.96
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.96
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.95
PTZ00099	176	rab6; Provisional	99.95
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.95
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.95
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.95
PLN03110	216	Rab GTPase; Provisional	99.95
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.94
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.94
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.94
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.94
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.94
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.94
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.93
PTZ00369	189	Ras-like protein; Provisional	99.93
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.93
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.93
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.93
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.93
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.93
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.93
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.93
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.92
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.92
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.92
PLN03118	211	Rab family protein; Provisional	99.92
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.92
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.92
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.92
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.92
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.92
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.92
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.92
PLN03108	210	Rab family protein; Provisional	99.92
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.92
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.92
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.92
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.91
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.91
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.91
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.91
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.91
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.91
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.91
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.91
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.91
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.91
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.9
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.9
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.9
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.9
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.9
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.9
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.9
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.9
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.9
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.9
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.89
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.89
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.89
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.89
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.89
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.89
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.89
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.88
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.88
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.88
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.88
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.88
PLN00223	181	ADP-ribosylation factor; Provisional	99.88
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.88
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.87
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.87
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.86
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.86
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.86
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.86
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.86
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.86
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.86
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.86
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.86
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.86
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.86
KOG0395	196	consensus Ras-related GTPase [General function pre	99.86
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.85
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.85
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.85
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.85
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.85
PTZ00133	182	ADP-ribosylation factor; Provisional	99.85
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.85
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.85
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.84
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.84
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.83
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.83
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.83
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.83
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.82
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.82
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.82
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.81
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.8
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.8
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.8
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.79
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.79
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.79
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.79
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.79
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.78
PRK12299	335	obgE GTPase CgtA; Reviewed	99.75
KOG1673	205	consensus Ras GTPases [General function prediction	99.73
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.73
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.73
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.73
PLN00023	334	GTP-binding protein; Provisional	99.72
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.72
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.72
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.71
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.71
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.7
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.69
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.69
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.68
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.67
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.67
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.67
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.66
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.66
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.65
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.64
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.64
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.63
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.63
COG1100	219	GTPase SAR1 and related small G proteins [General	99.63
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.62
COG2229	187	Predicted GTPase [General function prediction only	99.62
PRK04213	201	GTP-binding protein; Provisional	99.61
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.59
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.59
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.58
PRK03003	472	GTP-binding protein Der; Reviewed	99.58
cd00881	189	GTP_translation_factor GTP translation factor fami	99.57
PRK12297	424	obgE GTPase CgtA; Reviewed	99.57
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.57
PRK05433	600	GTP-binding protein LepA; Provisional	99.57
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.56
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.56
PRK12296	500	obgE GTPase CgtA; Reviewed	99.55
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.55
PRK15494	339	era GTPase Era; Provisional	99.54
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.53
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.52
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.51
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.51
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.51
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.51
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.5
PRK03003	472	GTP-binding protein Der; Reviewed	99.5
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.49
CHL00189	742	infB translation initiation factor 2; Provisional	99.49
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.49
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.49
PRK11058	426	GTPase HflX; Provisional	99.49
PRK12298	390	obgE GTPase CgtA; Reviewed	99.48
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.46
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.46
PRK05306	787	infB translation initiation factor IF-2; Validated	99.46
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.45
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.43
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.42
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.41
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.4
PRK00089	292	era GTPase Era; Reviewed	99.4
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.39
PRK00093	435	GTP-binding protein Der; Reviewed	99.39
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.39
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.39
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.36
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.36
PRK04004	586	translation initiation factor IF-2; Validated	99.35
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.35
PRK00093	435	GTP-binding protein Der; Reviewed	99.34
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.34
PRK12317	425	elongation factor 1-alpha; Reviewed	99.34
PRK14845	1049	translation initiation factor IF-2; Provisional	99.33
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.33
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.32
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.31
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.31
PRK10218	607	GTP-binding protein; Provisional	99.3
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.3
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.28
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.27
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.27
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.26
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.26
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.25
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.25
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.24
PRK12289	352	GTPase RsgA; Reviewed	99.22
COG1159	298	Era GTPase [General function prediction only]	99.22
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.21
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.2
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.2
PRK13768	253	GTPase; Provisional	99.2
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.2
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.2
PRK09866	741	hypothetical protein; Provisional	99.16
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.16
PRK00098	298	GTPase RsgA; Reviewed	99.16
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.16
PRK12736	394	elongation factor Tu; Reviewed	99.16
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.15
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.14
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.11
COG1160	444	Predicted GTPases [General function prediction onl	99.09
PRK12288	347	GTPase RsgA; Reviewed	99.09
PLN00043	447	elongation factor 1-alpha; Provisional	99.08
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.07
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	99.06
KOG1145	683	consensus Mitochondrial translation initiation fac	99.05
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.04
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.02
COG2262	411	HflX GTPases [General function prediction only]	99.02
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.02
PRK12735	396	elongation factor Tu; Reviewed	99.02
PRK13351	687	elongation factor G; Reviewed	99.01
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.01
COG0536	369	Obg Predicted GTPase [General function prediction	98.96
COG1160	444	Predicted GTPases [General function prediction onl	98.96
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.95
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	98.94
COG0486	454	ThdF Predicted GTPase [General function prediction	98.93
KOG0082	354	consensus G-protein alpha subunit (small G protein	98.93
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	98.91
PRK12740	668	elongation factor G; Reviewed	98.9
PRK00049	396	elongation factor Tu; Reviewed	98.89
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.88
CHL00071	409	tufA elongation factor Tu	98.88
PTZ00141	446	elongation factor 1- alpha; Provisional	98.87
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	98.85
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.84
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	98.83
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	98.83
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	98.83
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.82
PF09439	181	SRPRB: Signal recognition particle receptor beta s	98.82
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.81
PLN03126	478	Elongation factor Tu; Provisional	98.8
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.8
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	98.79
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.78
COG0218	200	Predicted GTPase [General function prediction only	98.77
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.76
PLN03127	447	Elongation factor Tu; Provisional	98.76
KOG0090	238	consensus Signal recognition particle receptor, be	98.74
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.7
COG1084	346	Predicted GTPase [General function prediction only	98.7
PRK12739	691	elongation factor G; Reviewed	98.69
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.69
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	98.68
TIGR00503	527	prfC peptide chain release factor 3. This translat	98.67
PRK01889	356	GTPase RsgA; Reviewed	98.65
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.65
PRK13796	365	GTPase YqeH; Provisional	98.64
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.64
COG1162	301	Predicted GTPases [General function prediction onl	98.62
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.61
COG1217	603	TypA Predicted membrane GTPase involved in stress	98.59
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.57
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.55
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.54
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.46
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.45
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.41
COG1163	365	DRG Predicted GTPase [General function prediction	98.34
PRK09602	396	translation-associated GTPase; Reviewed	98.3
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.27
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	98.26
PRK00007	693	elongation factor G; Reviewed	98.25
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.21
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.17
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.16
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	98.16
KOG3886	295	consensus GTP-binding protein [Signal transduction	98.11
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	98.1
COG3596	296	Predicted GTPase [General function prediction only	98.07
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	98.07
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	98.0
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	97.98
COG5258	527	GTPBP1 GTPase [General function prediction only]	97.9
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	97.9
KOG0461	522	consensus Selenocysteine-specific elongation facto	97.9
PLN00116	843	translation elongation factor EF-2 subunit; Provis	97.89
PTZ00416	836	elongation factor 2; Provisional	97.87
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	97.87
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	97.83
PRK07560	731	elongation factor EF-2; Reviewed	97.79
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	97.78
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	97.75
KOG0466	466	consensus Translation initiation factor 2, gamma s	97.73
COG0050	394	TufB GTPases - translation elongation factors [Tra	97.73
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.72
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	97.69
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	97.69
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	97.63
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	97.63
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.57
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	97.57
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	97.53
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	97.51
cd03110	179	Fer4_NifH_child This protein family's function is	97.4
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.39
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	97.35
KOG1143	591	consensus Predicted translation elongation factor	97.31
PTZ00258	390	GTP-binding protein; Provisional	97.2
KOG0460	449	consensus Mitochondrial translation elongation fac	97.19
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	97.14
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.1
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	97.09
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.08
COG1161	322	Predicted GTPases [General function prediction onl	97.08
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	96.98
KOG0465	721	consensus Mitochondrial elongation factor [Transla	96.98
KOG3887	347	consensus Predicted small GTPase involved in nucle	96.98
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	96.9
KOG0410	410	consensus Predicted GTP binding protein [General f	96.89
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	96.76
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	96.64
KOG2484	435	consensus GTPase [General function prediction only	96.47
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	96.44
KOG2423	572	consensus Nucleolar GTPase [General function predi	96.29
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	96.22
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	96.21
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	96.15
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	96.04
PRK09601	364	GTP-binding protein YchF; Reviewed	96.03
KOG0467	887	consensus Translation elongation factor 2/ribosome	96.02
TIGR00064	272	ftsY signal recognition particle-docking protein F	95.98
PHA02518	211	ParA-like protein; Provisional	95.74
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	95.71
KOG2486	320	consensus Predicted GTPase [General function predi	95.63
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	95.62
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	95.17
COG1149	284	MinD superfamily P-loop ATPase containing an inser	95.15
PRK10416	318	signal recognition particle-docking protein FtsY;	95.15
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	94.97
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	94.96
PRK14974	336	cell division protein FtsY; Provisional	94.93
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	94.86
PF14331	266	ImcF-related_N: ImcF-related N-terminal domain	94.75
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	94.67
cd03111	106	CpaE_like This protein family consists of proteins	94.62
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	94.49
cd02036	179	MinD Bacterial cell division requires the formatio	94.47
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	94.46
COG0523	323	Putative GTPases (G3E family) [General function pr	94.37
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	94.19
KOG4273	418	consensus Uncharacterized conserved protein [Funct	94.03
cd03112	158	CobW_like The function of this protein family is u	93.99
PRK13505	557	formate--tetrahydrofolate ligase; Provisional	93.98
KOG0464	753	consensus Elongation factor G [Translation, riboso	93.86
PRK00771	437	signal recognition particle protein Srp54; Provisi	93.67
COG4963	366	CpaE Flp pilus assembly protein, ATPase CpaE [Intr	93.14
TIGR00959	428	ffh signal recognition particle protein. This mode	93.11
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	93.11
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	92.99
KOG3929	363	consensus Uncharacterized conserved protein [Funct	92.78
cd03115	173	SRP The signal recognition particle (SRP) mediates	92.55
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	91.95
cd03114	148	ArgK-like The function of this protein family is u	91.95
PRK10867	433	signal recognition particle protein; Provisional	91.83
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	91.73
COG3523	1188	IcmF Type VI protein secretion system component Va	90.89
TIGR01968	261	minD_bact septum site-determining protein MinD. Th	90.79
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	90.7
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	90.37
CHL00175	281	minD septum-site determining protein; Validated	89.92
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	89.68
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	89.26
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	88.92
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	88.7
PF09419	168	PGP_phosphatase: Mitochondrial PGP phosphatase; In	88.43
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	88.41
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	88.14
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	88.05
PRK13849	231	putative crown gall tumor protein VirC1; Provision	87.95
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	87.48
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	87.42
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	86.86
PRK11537	318	putative GTP-binding protein YjiA; Provisional	86.81
cd02117	212	NifH_like This family contains the NifH (iron prot	86.57
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	86.53
PRK10818	270	cell division inhibitor MinD; Provisional	86.49
TIGR01969	251	minD_arch cell division ATPase MinD, archaeal. Thi	86.18
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	85.96
KOG1534	273	consensus Putative transcription factor FET5 [Tran	85.01
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	84.14
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	83.51
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	83.44
cd02032	267	Bchl_like This family of proteins contains bchL an	83.37
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	82.74
TIGR01007	204	eps_fam capsular exopolysaccharide family. This mo	82.51
PF10087	97	DUF2325: Uncharacterized protein conserved in bact	82.16
COG0012	372	Predicted GTPase, probable translation factor [Tra	82.02
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	81.91
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	80.7
KOG0781	587	consensus Signal recognition particle receptor, al	80.63

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.8e-34  Score=189.65  Aligned_cols=143  Identities=66%  Similarity=1.046  Sum_probs=126.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      |||||+||+||+.+...||+++|++|||||+++..||+.+..|+..+..+....+|.++||||.|+.+.+.++.++++.+
T Consensus        61 QIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~f  140 (205)
T KOG0084|consen   61 QIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEF  140 (205)
T ss_pred             EeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999888899999999999999999999999999


Q ss_pred             HHHcCCc-EEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCCCccccCC-CCCCCCCCCcC
Q 032243           81 ADEIGIP-FMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKG-QPVAQKSGCCS  143 (144)
Q Consensus        81 ~~~~~~~-~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~c~~  143 (144)
                      +..++++ ++++||+++.+++++|..|+..++.+.......+....+..+... +..+...+||+
T Consensus       141 a~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~~~~~~~~~~~~~~ql~~~p~~~~~~~~C~  205 (205)
T KOG0084|consen  141 ADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRKGLHVKWSTASLESVQLKGTPVKKSNGGCCE  205 (205)
T ss_pred             HHhcCCcceeecccCCccCHHHHHHHHHHHHHHhcccCCCCCcCCCCceeeCCCCcccccCCCCC
Confidence            9999998 999999999999999999999999887777766643334444444 33356666874

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.3e-33  Score=183.80  Aligned_cols=143  Identities=42%  Similarity=0.717  Sum_probs=123.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      .||||+||+||..+.+.||++++++|+|||+++.+||..++.|+..+....++++-+.|+|||.||...+.+..+++..+
T Consensus        57 eIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~y  136 (200)
T KOG0092|consen   57 EIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAY  136 (200)
T ss_pred             EEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHH
Confidence            38999999999999999999999999999999999999999999999988877788888999999988889999999999


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCCCccccCCC-CCCCCCCCcC
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQ-PVAQKSGCCS  143 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~c~~  143 (144)
                      ++..++.++++||++|.|++++|..|.+.+............+.+.....+.. +++++++||+
T Consensus       137 Ae~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~C~  200 (200)
T KOG0092|consen  137 AESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQERQGLPNRRQGVDLNSNQEPARPSGCCA  200 (200)
T ss_pred             HHhcCCEEEEEecccccCHHHHHHHHHHhccCccccccccccccccceecccCCCCcCcCCcCC
Confidence            99999999999999999999999999999976555554433333233333322 6678888986

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=8.1e-31  Score=176.92  Aligned_cols=116  Identities=54%  Similarity=0.945  Sum_probs=110.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      |+|||+||++|+.+...|+++|+++++|||++++.||+.+..|+..+..+.+..+|.+|||||+|+...+.++.+.++++
T Consensus        64 QiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~l  143 (207)
T KOG0078|consen   64 QIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEAL  143 (207)
T ss_pred             EEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999888899999999999998899999999999


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS  116 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~  116 (144)
                      +.++|+.++++||++|.||++.|-.|++.++.+...
T Consensus       144 A~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~  179 (207)
T KOG0078|consen  144 AREYGIKFFETSAKTNFNIEEAFLSLARDILQKLED  179 (207)
T ss_pred             HHHhCCeEEEccccCCCCHHHHHHHHHHHHHhhcch
Confidence            999999999999999999999999999999864444

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.2e-31  Score=176.05  Aligned_cols=115  Identities=43%  Similarity=0.688  Sum_probs=107.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD-NVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      |+|||+||+||+.+.+.|++++.++|+|||+++..||+.+..|+..++..... .+.++|||||.||.++++++.++...
T Consensus        74 QlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~  153 (221)
T KOG0094|consen   74 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGER  153 (221)
T ss_pred             EEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHH
Confidence            79999999999999999999999999999999999999999999999888765 58889999999999999999999999


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA  115 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~  115 (144)
                      .+++++..++++||+.|+|++++|..|+..+.....
T Consensus       154 kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~  189 (221)
T KOG0094|consen  154 KAKELNAEFIETSAKAGENVKQLFRRIAAALPGMEV  189 (221)
T ss_pred             HHHHhCcEEEEecccCCCCHHHHHHHHHHhccCccc
Confidence            999999999999999999999999999998876543

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=1.5e-30  Score=168.37  Aligned_cols=143  Identities=34%  Similarity=0.678  Sum_probs=119.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      .||||+||++|..+.+.||++++++++|||++|++||..++.|...++......+-.++|+||+||..++.++.+++..+
T Consensus        65 ~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~Y  144 (218)
T KOG0088|consen   65 HIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAY  144 (218)
T ss_pred             eeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHH
Confidence            38999999999999999999999999999999999999999999999888776788899999999998899999999999


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCC----------CCCCCccccCCCCCCCCCCCcC
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN----------NARPPTVQIKGQPVAQKSGCCS  143 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~c~~  143 (144)
                      ++..|..++++||+.+.||.++|+.+-....++.......-          .......-...+-++++++||.
T Consensus       145 AesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~s~~qr~~~~~s~qpp~t~r~~~~iD~e~~a~~sg~~CC~  217 (218)
T KOG0088|consen  145 AESVGALYMETSAKDNVGISELFESLTAKMIEHSSQRQRTRSPLSTQPPSTNRSIRLIDNEAEAERSGKRCCR  217 (218)
T ss_pred             HHhhchhheecccccccCHHHHHHHHHHHHHHHhhhcccccCCcCCCCCCcccchhccCCCcccccccCCccC
Confidence            99999999999999999999999999887776542222211          1111222233345567888885

>cd04120 Rab12 Rab12 subfamily

Probab=99.97  E-value=7.8e-29  Score=171.04  Aligned_cols=113  Identities=47%  Similarity=0.870  Sum_probs=102.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||+|+++|+.+++.|++++|++|+|||++++.+|+.+..|+..+........|+++|+||+|+...+.+...++..+
T Consensus        52 ~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~  131 (202)
T cd04120          52 QIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKF  131 (202)
T ss_pred             EEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHH
Confidence            58999999999999999999999999999999999999999999988776656799999999999977777878888888


Q ss_pred             HHHc-CCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           81 ADEI-GIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        81 ~~~~-~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      ++.. ++.++++||++|.|++++|++++..+...
T Consensus       132 a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~  165 (202)
T cd04120         132 AQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK  165 (202)
T ss_pred             HHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence            8775 78999999999999999999999988754

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04126 Rab20 Rab20 subfamily

Probab=99.96  E-value=9.8e-29  Score=172.44  Aligned_cols=141  Identities=35%  Similarity=0.527  Sum_probs=117.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC------------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA------------   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~------------   68 (144)
                      +||||+|+++|..++..++.++|++|+|||++++.+|..+..|+..+........|+++|+||.|+..            
T Consensus        47 ~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~  126 (220)
T cd04126          47 SIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAG  126 (220)
T ss_pred             EEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccccccccccc
Confidence            48999999999999999999999999999999999999999888888665545689999999999965            


Q ss_pred             -------CcccCHHHHHHHHHHcC--------------CcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCCCc
Q 032243           69 -------NKVVSYETAKAFADEIG--------------IPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPT  127 (144)
Q Consensus        69 -------~~~~~~~~~~~~~~~~~--------------~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~  127 (144)
                             .+.++.+++..+++..+              .+++++||++|.|++++|..++..+.....++..+.+.-...
T Consensus       127 ~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~  206 (220)
T cd04126         127 DRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGT  206 (220)
T ss_pred             ccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhcc
Confidence                   46777889999998876              579999999999999999999999987777766655443333


Q ss_pred             cccCCCCCCCCCCCc
Q 032243          128 VQIKGQPVAQKSGCC  142 (144)
Q Consensus       128 ~~~~~~~~~~~~~c~  142 (144)
                      ..+. .+.+++++||
T Consensus       207 ~~~~-~~~~~~~~~~  220 (220)
T cd04126         207 VNLP-NPKRSKSKCC  220 (220)
T ss_pred             ccCC-CcccCCCCCC
Confidence            2222 2556788888

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.3e-28  Score=165.99  Aligned_cols=113  Identities=50%  Similarity=0.816  Sum_probs=107.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      |||||+||+||+.+...||+++.++++|||++...+|+.+..|+..++.+...++++++||||+||...+.++.+++..+
T Consensus        66 qIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~  145 (222)
T KOG0087|consen   66 QIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAF  145 (222)
T ss_pred             eeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhH
Confidence            79999999999999999999999999999999999999999999999999988999999999999988888889999999


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      ++..++.++++||..+.|++.+|+.++..+...
T Consensus       146 Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~  178 (222)
T KOG0087|consen  146 AEKEGLFFLETSALDATNVEKAFERVLTEIYKI  178 (222)
T ss_pred             HHhcCceEEEecccccccHHHHHHHHHHHHHHH
Confidence            999999999999999999999999888887643

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.4e-28  Score=161.82  Aligned_cols=119  Identities=48%  Similarity=0.785  Sum_probs=111.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      |||||+||++|++..+.||+++-++|+|||++.+++|+.+..|+..++.+..++..++|++||.||...+.++.++...+
T Consensus        58 qiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaF  137 (216)
T KOG0098|consen   58 QIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAF  137 (216)
T ss_pred             EEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999877899999999999998899999999999


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCC
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS  119 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~  119 (144)
                      ++++++.++++||+++.|+++.|...+..+.+.......
T Consensus       138 A~ehgLifmETSakt~~~VEEaF~nta~~Iy~~~q~g~~  176 (216)
T KOG0098|consen  138 AREHGLIFMETSAKTAENVEEAFINTAKEIYRKIQDGVF  176 (216)
T ss_pred             HHHcCceeehhhhhhhhhHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999999998876555444

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=1.3e-28  Score=157.68  Aligned_cols=139  Identities=47%  Similarity=0.744  Sum_probs=118.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      |||||+|+++|+.+...|+++.+++++|||.++.+||..+..|+..++..++ ..|-++||||.|+...+.+..++++.+
T Consensus        60 qIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~  138 (198)
T KOG0079|consen   60 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAF  138 (198)
T ss_pred             EEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHH
Confidence            7999999999999999999999999999999999999999999999999886 689999999999988888889999999


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCCCccccCCCCCCCCCCCc
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC  142 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  142 (144)
                      +..+++.+|++||+.+.|++..|.-|.+.+.+..............  -.-+++++..++||
T Consensus       139 A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~k~r~~~~~~r~~~--~~l~~n~~~~~k~c  198 (198)
T KOG0079|consen  139 ALQMGIELFETSAKENENVEAMFHCITKQVLQAKLRESVEQQRADA--VSLKDNSKSTKKCC  198 (198)
T ss_pred             HHhcCchheehhhhhcccchHHHHHHHHHHHHHHHhhcHHHHhhcc--eEeccCCCccccCC
Confidence            9999999999999999999999999999988776332222221111  11124566777888

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.96  E-value=2.5e-28  Score=161.40  Aligned_cols=143  Identities=34%  Similarity=0.571  Sum_probs=114.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCC--cccCH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTAN--KVVSY   74 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~--~~~~~   74 (144)
                      |||||+||+||.++...||+++|.++++||++++.+|+.+..|-..+..+..    ...|+||+|||+|+..+  +.++.
T Consensus        61 QiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~  140 (210)
T KOG0394|consen   61 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSE  140 (210)
T ss_pred             EEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeH
Confidence            7999999999999999999999999999999999999999999999876643    47899999999998653  67889


Q ss_pred             HHHHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCCCccccCCCCCCCCCCCcCC
Q 032243           75 ETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCST  144 (144)
Q Consensus        75 ~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~  144 (144)
                      ..++.++...| +|+|++||+.+.|+++.|+.+...+...-.........-........+..++++ ||-|
T Consensus       141 ~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~~~~~~~~~~~d~i~~~~~~~~~~~-~c~c  210 (210)
T KOG0394|consen  141 KKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANEDREIAELADYSDQIVLSTKANNQSS-GCEC  210 (210)
T ss_pred             HHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhccchhhhhhhhcCcccccccccccCCC-CCCC
Confidence            99999999876 799999999999999999999998875333212112222333344444444444 5543

>cd04121 Rab40 Rab40 subfamily

Probab=99.96  E-value=1e-27  Score=164.00  Aligned_cols=111  Identities=42%  Similarity=0.712  Sum_probs=103.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||+|+++|..+++.|++++|++|+|||++++.+|+.+..|+..+.... ...|++|||||.|+...+.++.+++..+
T Consensus        58 ~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~  136 (189)
T cd04121          58 QLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAY  136 (189)
T ss_pred             EEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHH
Confidence            589999999999999999999999999999999999999999999997765 4699999999999977677888899999


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      ++..+++++++||++|.|++++|+++++.+..
T Consensus       137 a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~  168 (189)
T cd04121         137 AERNGMTFFEVSPLCNFNITESFTELARIVLM  168 (189)
T ss_pred             HHHcCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998864

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.96  E-value=1.1e-27  Score=165.31  Aligned_cols=142  Identities=35%  Similarity=0.579  Sum_probs=114.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCcccCHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA----SDNVNKLLVGNKCDLTANKVVSYET   76 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ilv~nK~Dl~~~~~~~~~~   76 (144)
                      +||||+|+++|..+++.+++++|++|+|||++++.+|+.+..|+..+....    ...+|+++|+||.|+.....+..++
T Consensus        53 ~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~  132 (201)
T cd04107          53 QLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQ  132 (201)
T ss_pred             EEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHH
Confidence            489999999999999999999999999999999999999999988876532    2468999999999997556667888


Q ss_pred             HHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCCCCC--CCccccCCCCCCCCCCCc
Q 032243           77 AKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNAR--PPTVQIKGQPVAQKSGCC  142 (144)
Q Consensus        77 ~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~c~  142 (144)
                      +..+++..+ .+++++||++|.|++++|++|++.+..............  +....++....+++++||
T Consensus       133 ~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (201)
T cd04107         133 MDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILANDKNLQQAETPEDGSVIDLKQTTTKKKSKGCC  201 (201)
T ss_pred             HHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhchhhHhhcCCCcccccccccceeccccCCCC
Confidence            888998888 699999999999999999999999876554444433322  222233333445666788

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.6e-28  Score=157.50  Aligned_cols=119  Identities=41%  Similarity=0.728  Sum_probs=109.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      |+|||+||++|+++...|++++.+++++||++++.||.++.+|++.+..+.- .+..+++++||+||.+.+.++..++..
T Consensus        70 QlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~  149 (219)
T KOG0081|consen   70 QLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAA  149 (219)
T ss_pred             eeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHH
Confidence            7999999999999999999999999999999999999999999999966543 357789999999999999999999999


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCC
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS  119 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~  119 (144)
                      ++..+++|+|++||-+|.|+++..+.+.+.++++..+--+
T Consensus       150 La~kyglPYfETSA~tg~Nv~kave~LldlvM~Rie~~v~  189 (219)
T KOG0081|consen  150 LADKYGLPYFETSACTGTNVEKAVELLLDLVMKRIEQCVE  189 (219)
T ss_pred             HHHHhCCCeeeeccccCcCHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999887655444

>cd04144 Ras2 Ras2 subfamily

Probab=99.96  E-value=1.6e-27  Score=163.18  Aligned_cols=136  Identities=31%  Similarity=0.548  Sum_probs=111.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcccCHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTANKVVSYETA   77 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~   77 (144)
                      +||||+|+++|..++..++.++|++++|||+++..+|+.+..|+..+.....   ...|+++|+||+|+...+.+...+.
T Consensus        50 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~  129 (190)
T cd04144          50 EVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEG  129 (190)
T ss_pred             EEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHH
Confidence            4899999999999999999999999999999999999999999888865532   4689999999999976666777777


Q ss_pred             HHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCCCccccCCCCCCCCCCCc
Q 032243           78 KAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC  142 (144)
Q Consensus        78 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  142 (144)
                      ..++...+++++++||++|.|++++|+++++.+..+.....      +|.....+.+++++.+||
T Consensus       130 ~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~  188 (190)
T cd04144         130 AALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGGQ------GPKGGPTKKKEKKKRKCV  188 (190)
T ss_pred             HHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHhhcccC------CCcCCCCCcccccccCce
Confidence            78888888999999999999999999999998875554432      333333444555555555

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3e-28  Score=155.90  Aligned_cols=116  Identities=50%  Similarity=0.928  Sum_probs=110.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      |+|||+|+++|+.+.-.|+++++++|++||+++++||+.++.|...+..++..+.|+++++||+|+..++.++.+..+.+
T Consensus        73 QiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l  152 (193)
T KOG0093|consen   73 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQL  152 (193)
T ss_pred             EEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999888999999999999999999999999999


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS  116 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~  116 (144)
                      +..+|+.+|++||+.+.|++++|+.++..+-+.+..
T Consensus       153 ~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kmse  188 (193)
T KOG0093|consen  153 ADQLGFEFFETSAKENINVKQVFERLVDIICDKMSE  188 (193)
T ss_pred             HHHhChHHhhhcccccccHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999998765543

>cd04112 Rab26 Rab26 subfamily

Probab=99.95  E-value=5.1e-27  Score=160.75  Aligned_cols=139  Identities=45%  Similarity=0.802  Sum_probs=115.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||||+++|..++..++.++|++|+|||++++.+|+.+..|+..+........|+++++||.|+...+.+...++..+
T Consensus        53 ~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l  132 (191)
T cd04112          53 QIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERL  132 (191)
T ss_pred             EEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHH
Confidence            48999999999999999999999999999999999999999999999887666789999999999976666667788888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCCCccccCCCCCCCCCCCc
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC  142 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  142 (144)
                      +...+.+++++||++|.|++++|++|++.+.......+...+..   .+.-....+|.++||
T Consensus       133 ~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  191 (191)
T cd04112         133 AKEYGVPFMETSAKTGLNVELAFTAVAKELKHRKYEQPDEGKFK---ISDYVTKQKKISRCC  191 (191)
T ss_pred             HHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhccccCCCCcEE---eccccCcccccCCCC
Confidence            88888999999999999999999999999976643333332222   233334556888998

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=7.5e-27  Score=158.10  Aligned_cols=114  Identities=40%  Similarity=0.626  Sum_probs=102.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||+|+++|..++..|++++|++|+|||++++.+|+.+..|+..+........|++||+||+|+...+.+...++..+
T Consensus        32 ~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~e~~~~  111 (176)
T PTZ00099         32 QLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQK  111 (176)
T ss_pred             EEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCHHHHHHH
Confidence            48999999999999999999999999999999999999999999988766545689999999999976566777888888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      +...++.++++||++|.|++++|++|+..+....
T Consensus       112 ~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~  145 (176)
T PTZ00099        112 AQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD  145 (176)
T ss_pred             HHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            8888889999999999999999999999986533

>cd04110 Rab35 Rab35 subfamily

Probab=99.95  E-value=1.3e-26  Score=159.77  Aligned_cols=141  Identities=48%  Similarity=0.756  Sum_probs=117.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||||+++|..++..++.++|++++|||++++.+|..+..|+..+.... ...|+++|+||.|+.+...+...++..+
T Consensus        58 ~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~  136 (199)
T cd04110          58 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKF  136 (199)
T ss_pred             EEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHH
Confidence            489999999999999999999999999999999999999999999887655 3689999999999976666667788888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccC-CCCCCCCCCccccCCCCCCCCCCCc
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ-PSMNNARPPTVQIKGQPVAQKSGCC  142 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~c~  142 (144)
                      +...+++++++||++|.|++++|++|...+...+... ............-.+.+.+++++||
T Consensus       137 ~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (199)
T cd04110         137 AGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLPKNSKRKKRCC  199 (199)
T ss_pred             HHHcCCEEEEEECCCCcCHHHHHHHHHHHHHHhhhccCcccccCCccccCccchhccccccCC
Confidence            8888899999999999999999999999987543333 3333333444455556668999998

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.95  E-value=1.5e-27  Score=154.70  Aligned_cols=113  Identities=47%  Similarity=0.780  Sum_probs=105.9

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ||||+||++|+.+.+.||+++.++|+|||++.+++|..+..|+..+..++. +++..++|+||+|...++.++.++...+
T Consensus        64 iWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kf  143 (209)
T KOG0080|consen   64 IWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKF  143 (209)
T ss_pred             EEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHH
Confidence            799999999999999999999999999999999999999999999988875 4677799999999887889999999999


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      ++.++.-++++||++.+|+...|+.++..+.+..
T Consensus       144 Ar~h~~LFiE~SAkt~~~V~~~FeelveKIi~tp  177 (209)
T KOG0080|consen  144 ARKHRCLFIECSAKTRENVQCCFEELVEKIIETP  177 (209)
T ss_pred             HHhhCcEEEEcchhhhccHHHHHHHHHHHHhcCc
Confidence            9999999999999999999999999999988643

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.95  E-value=1.3e-26  Score=150.82  Aligned_cols=116  Identities=47%  Similarity=0.769  Sum_probs=106.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAK   78 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~   78 (144)
                      |+|||+||++|++..+.|++++-++++|||+++..||+-+..|+.....+-.  ...-+.+||.|.||...++++.+++.
T Consensus        61 qlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaE  140 (213)
T KOG0091|consen   61 QLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAE  140 (213)
T ss_pred             EEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHH
Confidence            7999999999999999999999999999999999999999999998876654  34555788999999999999999999


Q ss_pred             HHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243           79 AFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS  116 (144)
Q Consensus        79 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~  116 (144)
                      .+++..|+.++++||++|.|+++.|..|...+.....+
T Consensus       141 klAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~~i~q  178 (213)
T KOG0091|consen  141 KLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQAIQQ  178 (213)
T ss_pred             HHHHhcCceEEEecccCCCcHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999876655

>PLN03110 Rab GTPase; Provisional

Probab=99.95  E-value=2e-26  Score=160.68  Aligned_cols=114  Identities=46%  Similarity=0.795  Sum_probs=103.8

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||+|+++|..++..++++++++|+|||++++.+|+.+..|+..+......+.|+++|+||.|+...+.+..+++..+
T Consensus        64 ~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l  143 (216)
T PLN03110         64 QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQAL  143 (216)
T ss_pred             EEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHH
Confidence            58999999999999999999999999999999999999999999998877666799999999999976667777788888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      +...+++++++||++|.|++++|++|+..+.+..
T Consensus       144 ~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~~  177 (216)
T PLN03110        144 AEKEGLSFLETSALEATNVEKAFQTILLEIYHII  177 (216)
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            8888899999999999999999999999987643

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.94  E-value=3.2e-27  Score=149.20  Aligned_cols=121  Identities=45%  Similarity=0.843  Sum_probs=111.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      |+|||+||++|++....|++++|+++++||+.++.||++.+.|+..+..+..+.+.+++++||+|+..++.+..++...+
T Consensus        50 qiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kl  129 (192)
T KOG0083|consen   50 QIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKL  129 (192)
T ss_pred             EEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHH
Confidence            79999999999999999999999999999999999999999999999998877888999999999977777888899999


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCC
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN  121 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~  121 (144)
                      ++..++|+.++||++|.|++..|-.|++.+++.+-.-++..
T Consensus       130 a~~y~ipfmetsaktg~nvd~af~~ia~~l~k~~~~~~~~~  170 (192)
T KOG0083|consen  130 AEAYGIPFMETSAKTGFNVDLAFLAIAEELKKLKMGAPPEG  170 (192)
T ss_pred             HHHHCCCceeccccccccHhHHHHHHHHHHHHhccCCCCCC
Confidence            99999999999999999999999999999987665555443

>cd04125 RabA_like RabA-like subfamily

Probab=99.94  E-value=1.1e-25  Score=153.59  Aligned_cols=135  Identities=53%  Similarity=0.836  Sum_probs=112.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||+|+++|..++..+++++|++++|||++++.+|..+..|+..+........|+++++||.|+.....+....+..+
T Consensus        52 ~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~  131 (188)
T cd04125          52 QIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSF  131 (188)
T ss_pred             EEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHH
Confidence            48999999999999999999999999999999999999999999999877655689999999999976666777787888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCCCccccCCCCCCCCCCCcC
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCS  143 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~  143 (144)
                      +...+++++++||++|.|++++|+++++.+..+...++..        +.+.+...++++||.
T Consensus       132 ~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~  186 (188)
T cd04125         132 CDSLNIPFFETSAKQSINVEEAFILLVKLIIKRLEEQELS--------PKNIKQQFKKKNNCF  186 (188)
T ss_pred             HHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhcCcCC--------ccccccccccccCcc
Confidence            8888899999999999999999999999987543333221        133345556777775

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.94  E-value=1.6e-25  Score=157.30  Aligned_cols=112  Identities=26%  Similarity=0.534  Sum_probs=100.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC-----------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTA-----------   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-----------   68 (144)
                      +||||+|+++|..+++.|+.++|++++|||++++.+|+.+ ..|+..+....+ ..|+++|+||.|+..           
T Consensus        64 ~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~l~~~  142 (232)
T cd04174          64 SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLRTDLSTLMELSNQ  142 (232)
T ss_pred             EEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccccccchhhhhccc
Confidence            5899999999999999999999999999999999999985 789999887653 589999999999853           


Q ss_pred             -CcccCHHHHHHHHHHcCC-cEEEeecCCCC-CHHHHHHHHHHHHHHh
Q 032243           69 -NKVVSYETAKAFADEIGI-PFMETSAKDST-NVEQAFMAMAASIKDR  113 (144)
Q Consensus        69 -~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~-~i~~l~~~i~~~~~~~  113 (144)
                       ...++.+++.++++..++ .++++||++|. |++++|..++..+.+.
T Consensus       143 ~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         143 KQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             cCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence             256788899999999998 69999999997 8999999999988754

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=5.7e-26  Score=146.46  Aligned_cols=119  Identities=45%  Similarity=0.753  Sum_probs=110.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      |||||+||++|++..+.|++++.++++|||++++++|+.+..|+...+...++++-+++++||.||.+.++++..++..+
T Consensus        61 QIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~F  140 (214)
T KOG0086|consen   61 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRF  140 (214)
T ss_pred             EEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhh
Confidence            79999999999999999999999999999999999999999999999999888888899999999999999999999999


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCC
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS  119 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~  119 (144)
                      +.+..+-++++||.+|.|+++.|-...+.+..+.....-
T Consensus       141 aqEnel~flETSa~TGeNVEEaFl~c~~tIl~kIE~GEl  179 (214)
T KOG0086|consen  141 AQENELMFLETSALTGENVEEAFLKCARTILNKIESGEL  179 (214)
T ss_pred             hcccceeeeeecccccccHHHHHHHHHHHHHHHHhhcCC
Confidence            999999999999999999999999998888766555443

>cd01875 RhoG RhoG subfamily

Probab=99.94  E-value=1.6e-25  Score=153.36  Aligned_cols=111  Identities=29%  Similarity=0.523  Sum_probs=96.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc---------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK---------   70 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~---------   70 (144)
                      +||||+|+++|+.+++.|+.++|++|+|||++++.+|+.+. .|...+.... ...|++||+||.||.+..         
T Consensus        54 ~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~  132 (191)
T cd01875          54 NLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQ  132 (191)
T ss_pred             EEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhc
Confidence            58999999999999999999999999999999999999996 5877776554 369999999999995432         


Q ss_pred             ---ccCHHHHHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           71 ---VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        71 ---~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                         .+..+++..+++..+ ++++++||++|.|++++|+++++.+..
T Consensus       133 ~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         133 GQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             cCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence               355677888888888 599999999999999999999988753

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04111 Rab39 Rab39 subfamily

Probab=99.94  E-value=7.6e-25  Score=152.24  Aligned_cols=118  Identities=42%  Similarity=0.780  Sum_probs=104.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||+|+++|..++..+++++|++++|||++++.+|+.+..|+..+..... ...|++||+||.|+.....+..++...
T Consensus        55 ~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~  134 (211)
T cd04111          55 QLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEK  134 (211)
T ss_pred             EEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHH
Confidence            5899999999999999999999999999999999999999999999876543 357789999999997766777888888


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCC
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP  118 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~  118 (144)
                      +++..+++++++||++|.|++++|++|+..+.......+
T Consensus       135 ~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~~~~~~  173 (211)
T cd04111         135 LAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIKRGE  173 (211)
T ss_pred             HHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcCC
Confidence            999889999999999999999999999998876654443

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.8e-25  Score=141.79  Aligned_cols=113  Identities=47%  Similarity=0.829  Sum_probs=106.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      |||||+||++|+...+.|++++.+.++|||++.+.+++.+..|+...+..-.++..+++++||.||...+.+..+++..+
T Consensus        63 qiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~f  142 (215)
T KOG0097|consen   63 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEF  142 (215)
T ss_pred             EEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHH
Confidence            79999999999999999999999999999999999999999999999888777888999999999999999999999999


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      +++.|+.++++||++|.++++.|-..+..+.+-
T Consensus       143 aeengl~fle~saktg~nvedafle~akkiyqn  175 (215)
T KOG0097|consen  143 AEENGLMFLEASAKTGQNVEDAFLETAKKIYQN  175 (215)
T ss_pred             HhhcCeEEEEecccccCcHHHHHHHHHHHHHHh
Confidence            999999999999999999999998877777654

>PTZ00369 Ras-like protein; Provisional

Probab=99.93  E-value=2.8e-25  Score=151.89  Aligned_cols=113  Identities=38%  Similarity=0.663  Sum_probs=100.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      +||||+|+++|..++..|+.++|++++|||++++.+|+.+..|+..+..... .+.|+++++||.|+.....+...++..
T Consensus        56 ~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~  135 (189)
T PTZ00369         56 DILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQE  135 (189)
T ss_pred             EEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH
Confidence            4899999999999999999999999999999999999999999988866543 478999999999986666666677777


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      +++..+++++++||++|.|++++|++|++.+...
T Consensus       136 ~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~  169 (189)
T PTZ00369        136 LAKSFGIPFLETSAKQRVNVDEAFYELVREIRKY  169 (189)
T ss_pred             HHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence            8888889999999999999999999999888643

>cd04109 Rab28 Rab28 subfamily

Probab=99.93  E-value=6.8e-25  Score=152.86  Aligned_cols=113  Identities=32%  Similarity=0.506  Sum_probs=101.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcccCHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTANKVVSYETA   77 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~   77 (144)
                      +||||+|++.|..++..|++++|++|||||++++.+|+.+..|+..+.....   ...|+++|+||.|+...+.+..++.
T Consensus        53 ~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~  132 (215)
T cd04109          53 QVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKH  132 (215)
T ss_pred             EEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHH
Confidence            5899999999999999999999999999999999999999999999877642   3468999999999976667777888


Q ss_pred             HHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           78 KAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        78 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      ..++...+++++++||++|.|++++|++++..+...
T Consensus       133 ~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~  168 (215)
T cd04109         133 ARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLGV  168 (215)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            888888899999999999999999999999998754

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04122 Rab14 Rab14 subfamily

Probab=99.93  E-value=5.9e-25  Score=147.16  Aligned_cols=111  Identities=50%  Similarity=0.847  Sum_probs=101.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||+|+++|..+++.+++++|++|+|||++++.+|+.+..|+..+........|+++|+||.|+.....++.+++..+
T Consensus        54 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~  133 (166)
T cd04122          54 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQF  133 (166)
T ss_pred             EEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHH
Confidence            48999999999999999999999999999999999999999999988776556789999999999977777778888889


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +...+++++++||++|.|++++|.+++..+.
T Consensus       134 ~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~  164 (166)
T cd04122         134 ADENGLLFLECSAKTGENVEDAFLETAKKIY  164 (166)
T ss_pred             HHHcCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            9888999999999999999999999998764

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04133 Rop_like Rop subfamily

Probab=99.93  E-value=1.7e-25  Score=151.54  Aligned_cols=110  Identities=34%  Similarity=0.621  Sum_probs=98.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCc---------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTANK---------   70 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~---------   70 (144)
                      +||||+|+++|..++..+++++|++|+|||++++.||+.+ ..|+..+..... +.|++|||||.|+.+.+         
T Consensus        52 ~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~  130 (176)
T cd04133          52 GLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAP-NVPIVLVGTKLDLRDDKQYLADHPGA  130 (176)
T ss_pred             EEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeChhhccChhhhhhccCC
Confidence            5899999999999999999999999999999999999998 689999876653 69999999999995432         


Q ss_pred             -ccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           71 -VVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        71 -~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                       .++.+++..+++..+. .++++||++|.|++++|+.+++.+.
T Consensus       131 ~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~  173 (176)
T cd04133         131 SPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL  173 (176)
T ss_pred             CCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHHh
Confidence             4778889999999987 6999999999999999999998763

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.93  E-value=4e-25  Score=150.44  Aligned_cols=110  Identities=31%  Similarity=0.596  Sum_probs=98.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC-----------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTA-----------   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-----------   68 (144)
                      +||||+|+++|..+++.++.++|++++|||++++.+|+.+ ..|+..+....+ ..|++|||||.|+..           
T Consensus        56 ~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~~~~~~~~~~~~~  134 (182)
T cd04172          56 SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGCKSDLRTDLTTLVELSNH  134 (182)
T ss_pred             EEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEeEChhhhcChhhHHHHHhc
Confidence            5899999999999999999999999999999999999997 789999877664 689999999999853           


Q ss_pred             -CcccCHHHHHHHHHHcCC-cEEEeecCCCCC-HHHHHHHHHHHHH
Q 032243           69 -NKVVSYETAKAFADEIGI-PFMETSAKDSTN-VEQAFMAMAASIK  111 (144)
Q Consensus        69 -~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~l~~~i~~~~~  111 (144)
                       .+.++.+++.++++..++ +++++||++|.| ++++|..++....
T Consensus       135 ~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         135 RQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             CCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence             245788999999999995 899999999998 9999999988643

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.93  E-value=7.1e-25  Score=147.91  Aligned_cols=112  Identities=35%  Similarity=0.578  Sum_probs=101.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      +||||+|+++|..++..++.++|++++|||++++.+|..+..|+..+.... ....|+++|+||.|+.....++..+...
T Consensus        53 ~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~  132 (172)
T cd04141          53 DILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRN  132 (172)
T ss_pred             EEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHH
Confidence            589999999999999999999999999999999999999998888776643 2469999999999997767777888888


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      +++..+++++++||++|.|++++|++++..+..
T Consensus       133 ~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  165 (172)
T cd04141         133 LAREFNCPFFETSAALRHYIDDAFHGLVREIRR  165 (172)
T ss_pred             HHHHhCCEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            998889999999999999999999999988764

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04127 Rab27A Rab27a subfamily

Probab=99.93  E-value=2.4e-24  Score=145.86  Aligned_cols=112  Identities=44%  Similarity=0.776  Sum_probs=101.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      +||||+|+++|..++..+++++|++++|||++++.+|..+..|+..+..... ...|+++|+||.|+.+.+.+..+++..
T Consensus        66 ~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~  145 (180)
T cd04127          66 QLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKA  145 (180)
T ss_pred             EEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHH
Confidence            4899999999999999999999999999999999999999999998876542 368999999999997766777788888


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      ++...+++++++||++|.|++++|++|.+.+.+
T Consensus       146 ~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         146 LADKYGIPYFETSAATGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             HHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999987754

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04117 Rab15 Rab15 subfamily

Probab=99.93  E-value=1.7e-24  Score=144.53  Aligned_cols=109  Identities=40%  Similarity=0.802  Sum_probs=100.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||+|+++|..++..++.++|++++|||++++.+|+.+..|+..+........|+++|+||.|+...+.+..+++..+
T Consensus        52 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~  131 (161)
T cd04117          52 QIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKL  131 (161)
T ss_pred             EEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHH
Confidence            58999999999999999999999999999999999999999999998777655789999999999977777778888889


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      ++..+.+++++||++|.|++++|.+|++.
T Consensus       132 ~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         132 AKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            98888999999999999999999999865

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01865 Rab3 Rab3 subfamily

Probab=99.92  E-value=3.9e-24  Score=143.15  Aligned_cols=111  Identities=50%  Similarity=0.904  Sum_probs=100.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||+|+++|..++..+++++|++++|||+++..+|+.+..|+..+........|+++++||+|+.+.+.+..++..++
T Consensus        53 ~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~  132 (165)
T cd01865          53 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQL  132 (165)
T ss_pred             EEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHH
Confidence            58999999999999999999999999999999999999999999999777655789999999999976666667777888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +...+++++++||++|.|++++|++++..+-
T Consensus       133 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~  163 (165)
T cd01865         133 ADQLGFEFFEASAKENINVKQVFERLVDIIC  163 (165)
T ss_pred             HHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            8888899999999999999999999988764

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04128 Spg1 Spg1p

Probab=99.92  E-value=2.2e-24  Score=146.79  Aligned_cols=121  Identities=25%  Similarity=0.450  Sum_probs=100.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----cccCHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN-----KVVSYE   75 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-----~~~~~~   75 (144)
                      +||||+|+++|..++..++.++|++++|||++++.+|+++..|+..+........| ++|+||.|+...     .....+
T Consensus        52 ~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~  130 (182)
T cd04128          52 SIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITK  130 (182)
T ss_pred             EEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHH
Confidence            58999999999999999999999999999999999999999999998776554566 688999998421     111235


Q ss_pred             HHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCCC
Q 032243           76 TAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN  122 (144)
Q Consensus        76 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~  122 (144)
                      +...+++..+++++++||++|.|++++|+++++.+.+.....++.+.
T Consensus       131 ~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~~~~~~~~~~~  177 (182)
T cd04128         131 QARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFDLPLTIPEILT  177 (182)
T ss_pred             HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcCCChhhhcC
Confidence            56677888889999999999999999999999998765555554443

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=4.4e-25  Score=141.88  Aligned_cols=119  Identities=45%  Similarity=0.778  Sum_probs=108.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      |||||+||+||++....|++.++++|+|||++..++|+-+.+|+..+..+....+..++|+||+|+.+.++++.+....+
T Consensus        59 qiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeef  138 (213)
T KOG0095|consen   59 QIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEF  138 (213)
T ss_pred             EEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999887888999999999988889988888989


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCC
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS  119 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~  119 (144)
                      .+...+.++++||+...|++.+|..++..+.........
T Consensus       139 s~~qdmyfletsakea~nve~lf~~~a~rli~~ar~~d~  177 (213)
T KOG0095|consen  139 SEAQDMYFLETSAKEADNVEKLFLDLACRLISEARQNDL  177 (213)
T ss_pred             HHhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHhccc
Confidence            988888999999999999999999999888755444433

>PLN03118 Rab family protein; Provisional

Probab=99.92  E-value=7.6e-24  Score=147.14  Aligned_cols=115  Identities=50%  Similarity=0.785  Sum_probs=98.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAK   78 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~   78 (144)
                      +||||||+++|..++..+++++|++|+|||++++.+|..+.. |...+..... ...|+++|+||.|+.....+..++..
T Consensus        65 ~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~  144 (211)
T PLN03118         65 TIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGM  144 (211)
T ss_pred             EEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHH
Confidence            489999999999999999999999999999999999999976 4444543332 35799999999999766666677777


Q ss_pred             HHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243           79 AFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA  115 (144)
Q Consensus        79 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~  115 (144)
                      .++...+++++++||+++.|++++|++|...+.....
T Consensus       145 ~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~~~  181 (211)
T PLN03118        145 ALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPS  181 (211)
T ss_pred             HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence            7888888999999999999999999999999876543

>cd04131 Rnd Rnd subfamily

Probab=99.92  E-value=1.9e-24  Score=146.68  Aligned_cols=110  Identities=31%  Similarity=0.572  Sum_probs=97.8

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCC-----------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTA-----------   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-----------   68 (144)
                      +||||+|+++|..+++.++.++|++|+|||++++.||+.+ ..|+..+....+ ..|+++||||.||.+           
T Consensus        52 ~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~~~~~~~~~~~~~  130 (178)
T cd04131          52 SLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLRTDLSTLMELSHQ  130 (178)
T ss_pred             EEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhhcChhHHHHHHhc
Confidence            5899999999999999999999999999999999999996 789998887764 689999999999853           


Q ss_pred             -CcccCHHHHHHHHHHcCC-cEEEeecCCCCC-HHHHHHHHHHHHH
Q 032243           69 -NKVVSYETAKAFADEIGI-PFMETSAKDSTN-VEQAFMAMAASIK  111 (144)
Q Consensus        69 -~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~l~~~i~~~~~  111 (144)
                       ...++.+++.++++..++ +++++||++|++ ++++|..++.+..
T Consensus       131 ~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         131 RQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             CCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence             235778899999999997 899999999995 9999999988643

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04134 Rho3 Rho3 subfamily

Probab=99.92  E-value=2.8e-24  Score=146.98  Aligned_cols=110  Identities=36%  Similarity=0.596  Sum_probs=94.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc---------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK---------   70 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~---------   70 (144)
                      +||||+|+++|..++..++.++|++++|||++++.+|+.+. .|+..+.... ...|+++|+||.|+....         
T Consensus        51 ~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~  129 (189)
T cd04134          51 SLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRY  129 (189)
T ss_pred             EEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhc
Confidence            58999999999999999999999999999999999999886 5888887654 368999999999996433         


Q ss_pred             ---ccCHHHHHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           71 ---VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        71 ---~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                         .+...+...++...+ ++++++||++|.|++++|+++++.+.
T Consensus       130 ~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~  174 (189)
T cd04134         130 GKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVAL  174 (189)
T ss_pred             cCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence               234556677777776 68999999999999999999999886

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.92  E-value=6e-24  Score=142.49  Aligned_cols=112  Identities=58%  Similarity=1.010  Sum_probs=101.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||+|+++|..++..+++++|++++|||++++.+|..+..|+..+........|+++++||.|+.....+..+++..+
T Consensus        55 ~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~  134 (167)
T cd01867          55 QIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEAL  134 (167)
T ss_pred             EEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHH
Confidence            58999999999999999999999999999999999999999999999876656789999999999976666677788888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      +...+.+++++||++|.|++++|+++.+.+..
T Consensus       135 ~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  166 (167)
T cd01867         135 ADEYGIKFLETSAKANINVEEAFFTLAKDIKK  166 (167)
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            88888999999999999999999999998753

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.92  E-value=6e-24  Score=144.82  Aligned_cols=114  Identities=31%  Similarity=0.538  Sum_probs=97.8

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc----ccCHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK----VVSYE   75 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~----~~~~~   75 (144)
                      +||||+|+++|..+++.+++++|++++|||++++.+|+++. .|+..+.... .+.|+++++||.|+....    .+...
T Consensus        52 ~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~  130 (187)
T cd04132          52 ALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPA  130 (187)
T ss_pred             EEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHH
Confidence            58999999999999999999999999999999999999986 4777776544 368999999999985432    35577


Q ss_pred             HHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243           76 TAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKDRMA  115 (144)
Q Consensus        76 ~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~  115 (144)
                      ++.+++...++ +++++||++|.|++++|+.+++.+.....
T Consensus       131 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~  171 (187)
T cd04132         131 QAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKKEG  171 (187)
T ss_pred             HHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhhh
Confidence            88888888887 99999999999999999999999875433

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04118 Rab24 Rab24 subfamily

Probab=99.92  E-value=1.3e-23  Score=143.92  Aligned_cols=137  Identities=33%  Similarity=0.608  Sum_probs=107.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC----cccCHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN----KVVSYET   76 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~----~~~~~~~   76 (144)
                      +||||+|++++..++..++.++|++++|||++++.+|+.+..|+..+.... ...|+++|+||.|+...    ..+...+
T Consensus        53 ~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~  131 (193)
T cd04118          53 GIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHD  131 (193)
T ss_pred             EEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHH
Confidence            489999999999999999999999999999999999999988998887654 36899999999998532    2344556


Q ss_pred             HHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCCCccccCCCCCCCCCCCc
Q 032243           77 AKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCC  142 (144)
Q Consensus        77 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~  142 (144)
                      +..++...+++++++||++|.|++++|+++++.+......+..+.+...    ...+..++.++||
T Consensus       132 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  193 (193)
T cd04118         132 VQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSRANNQMNTEKGVD----LGQKKNSYFYSCC  193 (193)
T ss_pred             HHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcccccCCCCccc----cCCcCCCCCCCCC
Confidence            7777777888999999999999999999999998765444433321111    1222335777788

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.92  E-value=9.9e-24  Score=147.42  Aligned_cols=114  Identities=24%  Similarity=0.503  Sum_probs=96.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN----------   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~----------   69 (144)
                      +||||+|+++|..+++.++.++|++|+|||++++.+|+.+. .|...+.... ...|++||+||.|+...          
T Consensus        52 ~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~-~~~piiLVgnK~DL~~~~~~~~~~~~~  130 (222)
T cd04173          52 NMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-PNAKVVLVGCKLDMRTDLATLRELSKQ  130 (222)
T ss_pred             EEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEECcccccchhhhhhhhhc
Confidence            48999999999999999999999999999999999999995 4665554443 46899999999999542          


Q ss_pred             --cccCHHHHHHHHHHcCC-cEEEeecCCCCC-HHHHHHHHHHHHHHhhc
Q 032243           70 --KVVSYETAKAFADEIGI-PFMETSAKDSTN-VEQAFMAMAASIKDRMA  115 (144)
Q Consensus        70 --~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~l~~~i~~~~~~~~~  115 (144)
                        ..++.+++..+++..+. +|+++||+++.+ ++++|+.+..+...+..
T Consensus       131 ~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~~  180 (222)
T cd04173         131 RLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRGH  180 (222)
T ss_pred             cCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhccC
Confidence              13667888999999995 899999999884 99999999998766443

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.92  E-value=6e-24  Score=142.16  Aligned_cols=111  Identities=83%  Similarity=1.263  Sum_probs=101.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||+|+++|..++..+++++|++++|||++++.+|..+..|+..+........|+++++||.|+.....+..+++..+
T Consensus        54 ~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~  133 (166)
T cd01869          54 QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEF  133 (166)
T ss_pred             EEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHH
Confidence            58999999999999999999999999999999999999999999998776645689999999999976666777888888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +...+++++++||++|.|++++|+.+.+.+.
T Consensus       134 ~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~  164 (166)
T cd01869         134 ADELGIPFLETSAKNATNVEQAFMTMAREIK  164 (166)
T ss_pred             HHHcCCeEEEEECCCCcCHHHHHHHHHHHHH
Confidence            8888999999999999999999999998775

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>PLN03108 Rab family protein; Provisional

Probab=99.92  E-value=2.2e-23  Score=144.77  Aligned_cols=114  Identities=50%  Similarity=0.868  Sum_probs=102.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||+|+++|..++..++.++|++++|||++++.+|..+..|+..+........|+++++||.|+...+.++..+..++
T Consensus        58 ~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~  137 (210)
T PLN03108         58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQF  137 (210)
T ss_pred             EEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHH
Confidence            48999999999999999999999999999999999999999999888766555799999999999976667778888889


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      ++..+++++++||+++.|++++|+++++.+....
T Consensus       138 ~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~~  171 (210)
T PLN03108        138 AKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKI  171 (210)
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            9889999999999999999999999999887543

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.92  E-value=9.6e-24  Score=145.52  Aligned_cols=110  Identities=31%  Similarity=0.584  Sum_probs=96.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||+|+++|..++..|++++|++|+|||+++..+|..+..|+..+.... ..+|+++|+||.|+.. +.+..+. ..+
T Consensus        47 ~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~  123 (200)
T smart00176       47 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITF  123 (200)
T ss_pred             EEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHH
Confidence            489999999999999999999999999999999999999999999997765 3699999999999854 3444443 457


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      +...++.++++||++|.|++++|++|+..+...
T Consensus       124 ~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176      124 HRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            777889999999999999999999999988653

Ran is involved in the active transport of proteins through nuclear pores.

>cd04175 Rap1 Rap1 subgroup

Probab=99.92  E-value=8.1e-24  Score=141.25  Aligned_cols=110  Identities=36%  Similarity=0.643  Sum_probs=98.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      +||||+|+++|..++..++.++|++++|||+++..+|+.+..|+..+.... ..+.|+++++||.|+.....++..+...
T Consensus        52 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  131 (164)
T cd04175          52 EILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN  131 (164)
T ss_pred             EEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHH
Confidence            489999999999999999999999999999999999999999988886653 3478999999999997666666677777


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      +++..+++++++||++|.|++++|.++...+
T Consensus       132 ~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l  162 (164)
T cd04175         132 LARQWGCAFLETSAKAKINVNEIFYDLVRQI  162 (164)
T ss_pred             HHHHhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            8888889999999999999999999998765

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04136 Rap_like Rap-like subfamily

Probab=99.92  E-value=7.8e-24  Score=140.88  Aligned_cols=110  Identities=41%  Similarity=0.681  Sum_probs=97.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      +||||+|+++|..++..+++++|++++|||++++.+|+.+..|+..+..... ...|+++++||.|+.+.+.+...+...
T Consensus        52 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  131 (163)
T cd04136          52 EILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQA  131 (163)
T ss_pred             EEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHH
Confidence            4799999999999999999999999999999999999999999988876543 468999999999997666666667777


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      +++.++.+++++||++|.|++++|+++.+.+
T Consensus       132 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  162 (163)
T cd04136         132 LARQWGCPFYETSAKSKINVDEVFADLVRQI  162 (163)
T ss_pred             HHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence            8877788999999999999999999998754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04176 Rap2 Rap2 subgroup

Probab=99.91  E-value=9.5e-24  Score=140.73  Aligned_cols=110  Identities=37%  Similarity=0.628  Sum_probs=96.8

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      +||||+|+++|..++..++.++|++++|||++++.+|.++..|+..+..... .+.|+++++||.|+.....+...+...
T Consensus        52 ~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~  131 (163)
T cd04176          52 EILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRA  131 (163)
T ss_pred             EEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHH
Confidence            4899999999999999999999999999999999999999999888866532 478999999999986655666667777


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      ++...+++++++||++|.|+.++|.++++.+
T Consensus       132 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd04176         132 LAEEWGCPFMETSAKSKTMVNELFAEIVRQM  162 (163)
T ss_pred             HHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence            7777888999999999999999999998754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01866 Rab2 Rab2 subfamily

Probab=99.91  E-value=2.8e-23  Score=139.43  Aligned_cols=112  Identities=52%  Similarity=0.911  Sum_probs=101.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||+|+++|..++..+++++|+++||||++++.+|..+..|+..+.....+..|+++|+||.|+.+...+...++..+
T Consensus        56 ~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~  135 (168)
T cd01866          56 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAF  135 (168)
T ss_pred             EEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHH
Confidence            48999999999999999999999999999999999999999999999877656799999999999976666777788888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      +...+++++++||+++.|++++|.++.+.+.+
T Consensus       136 ~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~  167 (168)
T cd01866         136 AKEHGLIFMETSAKTASNVEEAFINTAKEIYE  167 (168)
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            88889999999999999999999999988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.91  E-value=9.7e-24  Score=142.76  Aligned_cols=109  Identities=28%  Similarity=0.468  Sum_probs=94.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN----------   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~----------   69 (144)
                      +||||+|+++|..++..++.++|++|+|||++++.+|+.+. .|+..+.... ...|+++|+||.|+...          
T Consensus        52 ~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~  130 (175)
T cd01874          52 GLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKN  130 (175)
T ss_pred             EEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhc
Confidence            58999999999999999999999999999999999999996 4887776654 36899999999998543          


Q ss_pred             --cccCHHHHHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           70 --KVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        70 --~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                        +.++.+++.++++..+ +.++++||++|.|++++|+.++...
T Consensus       131 ~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         131 KQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA  174 (175)
T ss_pred             cCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence              4566777888888877 6899999999999999999998753

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.91  E-value=8.2e-24  Score=145.42  Aligned_cols=106  Identities=30%  Similarity=0.509  Sum_probs=92.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC-----------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA-----------   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~-----------   68 (144)
                      +||||+|+++  .+.+.++.++|++++|||++++.+|+.+. .|+..+.... ...|+++|+||.||..           
T Consensus        69 ~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~  145 (195)
T cd01873          69 RLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARR  145 (195)
T ss_pred             EEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhccc
Confidence            5899999986  34567899999999999999999999997 5888887665 3689999999999853           


Q ss_pred             --------CcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           69 --------NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        69 --------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                              .+.++.+++..+++..+++++++||++|.|++++|+.++++
T Consensus       146 ~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         146 PLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             ccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence                    35678889999999999999999999999999999998864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01868 Rab11_like Rab11-like

Probab=99.91  E-value=4.3e-23  Score=137.81  Aligned_cols=110  Identities=53%  Similarity=0.872  Sum_probs=99.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||+|+++|..+++.++++++++++|||++++.+|..+..|+..+........|+++|+||.|+...+.+..++...+
T Consensus        55 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~  134 (165)
T cd01868          55 QIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAF  134 (165)
T ss_pred             EEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHH
Confidence            58999999999999999999999999999999999999999999998877655689999999999976666667788888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      +...+++++++||++|.|++++|+++...+
T Consensus       135 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i  164 (165)
T cd01868         135 AEKNGLSFIETSALDGTNVEEAFKQLLTEI  164 (165)
T ss_pred             HHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            887888999999999999999999998764

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.91  E-value=4e-23  Score=137.76  Aligned_cols=111  Identities=30%  Similarity=0.610  Sum_probs=99.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-----CCCcEEEEEeCCCCCCCcccCHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-----DNVNKLLVGNKCDLTANKVVSYE   75 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~   75 (144)
                      ++|||+|+++|..++..++.++|++|+|||++++.+|..+..|+..+.....     ...|+++|+||.|+.....+...
T Consensus        52 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~  131 (168)
T cd04119          52 NFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSED  131 (168)
T ss_pred             EEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHH
Confidence            5899999999999999999999999999999999999999999999877643     36899999999999655566677


Q ss_pred             HHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           76 TAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        76 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +...++...+++++++||++|.|++++|++|.+.+.
T Consensus       132 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~  167 (168)
T cd04119         132 EGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIV  167 (168)
T ss_pred             HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            777788888899999999999999999999998764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.91  E-value=2.5e-23  Score=140.60  Aligned_cols=108  Identities=30%  Similarity=0.532  Sum_probs=94.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN----------   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~----------   69 (144)
                      +||||+|+++|..+++.++.++|++|+|||++++++|.++. .|+..+.... .+.|+++|+||.|+...          
T Consensus        52 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~  130 (174)
T cd01871          52 GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEK  130 (174)
T ss_pred             EEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhc
Confidence            48999999999999999999999999999999999999996 5777776554 36999999999998542          


Q ss_pred             --cccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHH
Q 032243           70 --KVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        70 --~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                        ..++.+++..+++..+. +++++||++|.|++++|+.++..
T Consensus       131 ~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         131 KLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             cCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence              24677888889988884 99999999999999999998864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd01864 Rab19 Rab19 subfamily

Probab=99.91  E-value=5.6e-23  Score=137.40  Aligned_cols=109  Identities=53%  Similarity=0.920  Sum_probs=98.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||||+++|..++..++.++|++++|||++++.+|..+..|+..+........|+++|+||+|+...+.+...++..+
T Consensus        55 ~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~  134 (165)
T cd01864          55 QIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTL  134 (165)
T ss_pred             EEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHH
Confidence            48999999999999999999999999999999999999999999999776556789999999999976666667788888


Q ss_pred             HHHcCC-cEEEeecCCCCCHHHHHHHHHHH
Q 032243           81 ADEIGI-PFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        81 ~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      ++..+. .++++||++|.|++++|+++.+.
T Consensus       135 ~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~  164 (165)
T cd01864         135 AEKNGMLAVLETSAKESQNVEEAFLLMATE  164 (165)
T ss_pred             HHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence            888775 78999999999999999999865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.91  E-value=6.2e-23  Score=136.51  Aligned_cols=108  Identities=40%  Similarity=0.710  Sum_probs=97.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||||+++|..++..+++++|++++|||++++.+|..+..|+..+.... ...|+++++||.|+..+..+..+++..+
T Consensus        54 ~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~  132 (162)
T cd04106          54 MLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEAL  132 (162)
T ss_pred             EEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHH
Confidence            589999999999999999999999999999999999999999998886544 3689999999999977667777788888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      ++..+++++++||++|.|++++|++|...
T Consensus       133 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  161 (162)
T cd04106         133 AKRLQLPLFRTSVKDDFNVTELFEYLAEK  161 (162)
T ss_pred             HHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            88899999999999999999999998753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04113 Rab4 Rab4 subfamily

Probab=99.91  E-value=5.2e-23  Score=136.89  Aligned_cols=109  Identities=50%  Similarity=0.825  Sum_probs=99.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||+|+++|..+++.+++++|++++|||+++..+|..+..|+..+.....++.|+++++||.|+.....+..+++..+
T Consensus        52 ~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~  131 (161)
T cd04113          52 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRF  131 (161)
T ss_pred             EEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHH
Confidence            58999999999999999999999999999999999999999999988776666799999999999976666778888888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      +...+++++++||+++.|++++|+++++.
T Consensus       132 ~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113         132 AQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             HHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            88889999999999999999999999864

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.90  E-value=3.8e-23  Score=137.61  Aligned_cols=111  Identities=46%  Similarity=0.866  Sum_probs=104.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +|||++|+++|..++..++.++|++|+|||++++.||+.+..|+..+........|++|++||.|+...+.++.+++..+
T Consensus        51 ~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~  130 (162)
T PF00071_consen   51 EIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEF  130 (162)
T ss_dssp             EEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHH
Confidence            48999999999999999999999999999999999999999999999988876689999999999977778888999999


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ++.++.+++++||+++.|+.++|..+++.+.
T Consensus       131 ~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~  161 (162)
T PF00071_consen  131 AKELGVPYFEVSAKNGENVKEIFQELIRKIL  161 (162)
T ss_dssp             HHHTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred             HHHhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999998774

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04140 ARHI_like ARHI subfamily

Probab=99.90  E-value=5.1e-23  Score=137.72  Aligned_cols=109  Identities=32%  Similarity=0.461  Sum_probs=95.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcccCHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTANKVVSYETA   77 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~   77 (144)
                      ++|||+|+++|..++..++.++|++++|||+++..+|+.+..|+..+.....   ...|+++|+||.|+.....+...++
T Consensus        52 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~  131 (165)
T cd04140          52 QITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEG  131 (165)
T ss_pred             EEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHH
Confidence            4899999999999999999999999999999999999999998887765432   4689999999999976566667777


Q ss_pred             HHHHHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           78 KAFADEIGIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        78 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      ..++...+++++++||++|.|++++|++|+..
T Consensus       132 ~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~~  163 (165)
T cd04140         132 AACATEWNCAFMETSAKTNHNVQELFQELLNL  163 (165)
T ss_pred             HHHHHHhCCcEEEeecCCCCCHHHHHHHHHhc
Confidence            77887888899999999999999999999764

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.90  E-value=6.8e-23  Score=136.45  Aligned_cols=110  Identities=40%  Similarity=0.639  Sum_probs=97.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||||+++|..+++.++.++|++++|||+++..+|+.+..|+..+.... ....|+++++||+|+.....+...+...
T Consensus        53 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~  132 (164)
T cd04145          53 DILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQE  132 (164)
T ss_pred             EEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHH
Confidence            479999999999999999999999999999999999999999988886643 2468999999999997666666667778


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      +++..+++++++||++|.|++++|++|+..+
T Consensus       133 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  163 (164)
T cd04145         133 LARKLKIPYIETSAKDRLNVDKAFHDLVRVI  163 (164)
T ss_pred             HHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence            8888889999999999999999999998765

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.90  E-value=1.1e-22  Score=135.65  Aligned_cols=109  Identities=33%  Similarity=0.592  Sum_probs=96.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||+|++++..+++.+++++|++++|||++++.+|..+..|+..+.... ...|+++|+||.|+.+...+.......+
T Consensus        55 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~  133 (164)
T cd04101          55 FIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAF  133 (164)
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHH
Confidence            489999999999999999999999999999999999999999998887665 3589999999999976666666666667


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      ....+.+++++||+++.|++++|+.+++.+
T Consensus       134 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         134 AQANQLKFFKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             HHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence            777788999999999999999999998865

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.90  E-value=1e-22  Score=135.73  Aligned_cols=111  Identities=43%  Similarity=0.741  Sum_probs=98.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||+|+++|..+++.++.++|++++|||++++.+|+.+..|...+..... ...|+++++||+|+...+.+....+..
T Consensus        51 ~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~  130 (164)
T smart00173       51 DILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKE  130 (164)
T ss_pred             EEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHH
Confidence            4899999999999999999999999999999999999999998888765433 368999999999997666666777778


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +++..+.+++++||++|.|++++|++|++.+.
T Consensus       131 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  162 (164)
T smart00173      131 LARQWGCPFLETSAKERVNVDEAFYDLVREIR  162 (164)
T ss_pred             HHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence            88888899999999999999999999998764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.90  E-value=1.8e-22  Score=135.89  Aligned_cols=112  Identities=39%  Similarity=0.616  Sum_probs=95.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcc--cCHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKV--VSYETA   77 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~--~~~~~~   77 (144)
                      +||||+|+++|..++..+++++|++++|||++++.+|..+..|+..+.... +...|+++|+||.|+.+...  ...+++
T Consensus        52 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~  131 (170)
T cd04108          52 QLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDA  131 (170)
T ss_pred             EEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHH
Confidence            589999999999999999999999999999999999999999999886543 34578999999999854433  235566


Q ss_pred             HHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           78 KAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        78 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      ..+++.++.+++++||++|.|++++|+.|+..+.+
T Consensus       132 ~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~  166 (170)
T cd04108         132 IKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE  166 (170)
T ss_pred             HHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            67777788899999999999999999999998853

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.90  E-value=7.6e-23  Score=142.97  Aligned_cols=110  Identities=32%  Similarity=0.595  Sum_probs=95.8

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||+|+++|..++..|+.++|++|+|||++++.+|..+..|+..+.... ...|+++||||.|+.. ..+..+.. .+
T Consensus        65 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~  141 (219)
T PLN03071         65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TF  141 (219)
T ss_pred             EEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HH
Confidence            489999999999999999999999999999999999999999999997665 3699999999999853 33444444 66


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      ....+++++++||++|.|++++|++|+..+...
T Consensus       142 ~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~  174 (219)
T PLN03071        142 HRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  174 (219)
T ss_pred             HHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence            777788999999999999999999999988643

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.90  E-value=2.4e-22  Score=133.69  Aligned_cols=112  Identities=60%  Similarity=0.949  Sum_probs=101.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||||+++|..++..++..+|++++|||++++.+++.+..|+..+..+.....|+++++||.|+.....+..+.+..+
T Consensus        52 ~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~  131 (164)
T smart00175       52 QIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAF  131 (164)
T ss_pred             EEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHH
Confidence            48999999999999999999999999999999999999999999998877655799999999999876566667778888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      ++..+++++++||++|.|++++|++|.+.+..
T Consensus       132 ~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~  163 (164)
T smart00175      132 AEEHGLPFFETSAKTNTNVEEAFEELAREILK  163 (164)
T ss_pred             HHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            88888999999999999999999999988753

Rab GTPases are implicated in vesicle trafficking.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.90  E-value=1.8e-22  Score=133.92  Aligned_cols=109  Identities=38%  Similarity=0.681  Sum_probs=95.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||+|+++|..++..|++++|++++|||+++..+|..+..|+..+..... ...|+++|+||.|+.. +.....+...
T Consensus        52 ~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~  130 (162)
T cd04138          52 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQD  130 (162)
T ss_pred             EEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHH
Confidence            4799999999999999999999999999999999999999988888876543 4689999999999865 4455667777


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      +++..+++++++||++|.|++++|+++++.+
T Consensus       131 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  161 (162)
T cd04138         131 LAKSYGIPYIETSAKTRQGVEEAFYTLVREI  161 (162)
T ss_pred             HHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence            8888889999999999999999999998654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.90  E-value=8.2e-23  Score=137.52  Aligned_cols=110  Identities=34%  Similarity=0.583  Sum_probs=96.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc---------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK---------   70 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~---------   70 (144)
                      ++|||+|+++|..++..++.++|++|+|||++++.+|+.+. .|+..+.... ...|+++|+||.|+....         
T Consensus        49 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~  127 (174)
T smart00174       49 GLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQ  127 (174)
T ss_pred             EEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcc
Confidence            58999999999999999999999999999999999999986 5888887655 369999999999986422         


Q ss_pred             ---ccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           71 ---VVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        71 ---~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                         .++.+++..+++..+. +++++||++|.|++++|+.+++.+.
T Consensus       128 ~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~  172 (174)
T smart00174      128 KQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAAL  172 (174)
T ss_pred             cCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhc
Confidence               2566777888888886 9999999999999999999998875

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01861 Rab6 Rab6 subfamily

Probab=99.89  E-value=2.9e-22  Score=133.12  Aligned_cols=109  Identities=40%  Similarity=0.704  Sum_probs=98.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||||+.++..++..++.++|++++|||++++.+|..+..|+..+......+.|+++++||.|+........++...+
T Consensus        52 ~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~  131 (161)
T cd01861          52 QLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKK  131 (161)
T ss_pred             EEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHH
Confidence            48999999999999999999999999999999999999999999988776555699999999999966666667778888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      ++..+++++++||+++.|++++++++.+.
T Consensus       132 ~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861         132 AKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             HHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            88888999999999999999999999765

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04124 RabL2 RabL2 subfamily

Probab=99.89  E-value=3.4e-22  Score=133.29  Aligned_cols=109  Identities=37%  Similarity=0.620  Sum_probs=93.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||+|+++|..+++.+++++|++++|||++++.++..+..|+..+.... ...|+++++||.|+...  . ..+...+
T Consensus        52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~--~-~~~~~~~  127 (161)
T cd04124          52 DFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS--V-TQKKFNF  127 (161)
T ss_pred             EEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh--H-HHHHHHH
Confidence            489999999999999999999999999999999999999999999887654 35899999999998421  1 3344556


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      ++..+++++++||++|.|++++|+.++..+...
T Consensus       128 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  160 (161)
T cd04124         128 AEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSY  160 (161)
T ss_pred             HHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            666788999999999999999999999887653

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.89  E-value=2.9e-22  Score=134.40  Aligned_cols=109  Identities=33%  Similarity=0.613  Sum_probs=94.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||+|++++..++..++..+|++|+|||+++..+|..+..|+..+..... ..|+++|+||.|+.. ..+. .+..++
T Consensus        52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~  128 (166)
T cd00877          52 NVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITF  128 (166)
T ss_pred             EEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHH
Confidence            4899999999999999999999999999999999999999999999977664 699999999999863 3333 334456


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      .+..+++++++||++|.|++++|++|++.+.+
T Consensus       129 ~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  160 (166)
T cd00877         129 HRKKNLQYYEISAKSNYNFEKPFLWLARKLLG  160 (166)
T ss_pred             HHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence            66667899999999999999999999988864

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04116 Rab9 Rab9 subfamily

Probab=99.89  E-value=4.3e-22  Score=133.61  Aligned_cols=108  Identities=42%  Similarity=0.735  Sum_probs=94.8

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCcccCHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTANKVVSYET   76 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~   76 (144)
                      +||||+|+++|..++..+++++|++++|||++++.+|+.+..|...+.....    ...|+++++||.|+. .+.+..++
T Consensus        57 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~  135 (170)
T cd04116          57 QIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEE  135 (170)
T ss_pred             EEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHH
Confidence            4899999999999999999999999999999999999999999888765432    368999999999985 45566778


Q ss_pred             HHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHH
Q 032243           77 AKAFADEIG-IPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        77 ~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      +.++++..+ .+++++||++|.|+.++|+.+++.
T Consensus       136 ~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         136 AQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             HHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence            888888887 489999999999999999998864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.89  E-value=8.7e-22  Score=131.07  Aligned_cols=110  Identities=49%  Similarity=0.818  Sum_probs=99.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||+|++++..++..++.++|++++|+|++++.++.....|+..+........|+++++||.|+......+..+...+
T Consensus        53 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~  132 (163)
T cd01860          53 EIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEY  132 (163)
T ss_pred             EEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHH
Confidence            48999999999999999999999999999999999999999999998777656789999999999876666667788888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      ....+++++++||++|.|+.++|++++..+
T Consensus       133 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         133 ADENGLLFFETSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             HHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            888889999999999999999999998875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.89  E-value=7.3e-22  Score=135.94  Aligned_cols=142  Identities=25%  Similarity=0.353  Sum_probs=108.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCC-CcccCHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTA-NKVVSYETAK   78 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~-~~~~~~~~~~   78 (144)
                      +||||+|+.+|..+++.++.++|+++||||++++.+|+.+..|+..+..... ..+|+++|+||.|+.. ...+......
T Consensus        50 ~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~  129 (198)
T cd04147          50 DILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDAL  129 (198)
T ss_pred             EEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHH
Confidence            4899999999999999999999999999999999999999999888876644 4699999999999865 3444444444


Q ss_pred             HHHH-HcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCC--CCCCCCCCccccCCCCCCCCCCCc
Q 032243           79 AFAD-EIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP--SMNNARPPTVQIKGQPVAQKSGCC  142 (144)
Q Consensus        79 ~~~~-~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~c~  142 (144)
                      +... ..+.+++++||++|.|++++|++++..+.......+  ......-+.+.+++.+..+...|.
T Consensus       130 ~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (198)
T cd04147         130 STVELDWNCGFVETSAKDNENVLEVFKELLRQANLPYNLSPALRRRRESLPSEIQRRPPMNKTNSCS  196 (198)
T ss_pred             HHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhhcccccchhhHHHHhhccHhhhcCCCCCCCCccc
Confidence            3333 345789999999999999999999998764333333  122222344466666777777775

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.89  E-value=7.4e-22  Score=132.71  Aligned_cols=110  Identities=45%  Similarity=0.829  Sum_probs=97.6

Q ss_pred             CceeccchhHHh-hhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243            1 MQWDTAGQERFR-TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAK   78 (144)
Q Consensus         1 qi~Dt~G~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~   78 (144)
                      ++|||+|+++|. .++..+++++|++++|||++++.+|..+..|+..+..... ..+|+++|+||.|+.....+...+..
T Consensus        54 ~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~  133 (170)
T cd04115          54 QLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQ  133 (170)
T ss_pred             EEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHH
Confidence            489999999997 5789999999999999999999999999999988876542 46999999999999776777777888


Q ss_pred             HHHHHcCCcEEEeecCC---CCCHHHHHHHHHHHH
Q 032243           79 AFADEIGIPFMETSAKD---STNVEQAFMAMAASI  110 (144)
Q Consensus        79 ~~~~~~~~~~~~~Sa~~---~~~i~~l~~~i~~~~  110 (144)
                      .+++..+++++++||++   +.+++++|..++..+
T Consensus       134 ~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         134 RFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             HHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence            88888889999999999   899999999998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04123 Rab21 Rab21 subfamily

Probab=99.88  E-value=1.5e-21  Score=129.43  Aligned_cols=110  Identities=42%  Similarity=0.797  Sum_probs=98.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||+|++++..+++.++.++|++++|||+++..++..+..|+..+........|+++++||.|+.....+..++...+
T Consensus        52 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~  131 (162)
T cd04123          52 AIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEY  131 (162)
T ss_pred             EEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHH
Confidence            48999999999999999999999999999999999999999999988777655789999999999976666667777778


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      ....+.+++++|++++.|++++++++.+.+
T Consensus       132 ~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         132 AKSVGAKHFETSAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            888889999999999999999999998764

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04177 RSR1 RSR1 subgroup

Probab=99.88  E-value=1.3e-21  Score=131.25  Aligned_cols=111  Identities=37%  Similarity=0.621  Sum_probs=97.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||+|+++|..+++.+++.++++++|||.+++.+++.+..|...+.... ..+.|+++++||.|+...+.+..++...
T Consensus        52 ~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~  131 (168)
T cd04177          52 EILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVS  131 (168)
T ss_pred             EEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHH
Confidence            489999999999999999999999999999999999999998888886543 3469999999999997666666777777


Q ss_pred             HHHHcC-CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           80 FADEIG-IPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        80 ~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +++..+ .+++++||++|.|++++|++++..+.
T Consensus       132 ~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~  164 (168)
T cd04177         132 LSQQWGNVPFYETSARKRTNVDEVFIDLVRQII  164 (168)
T ss_pred             HHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            777777 79999999999999999999987654

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.88  E-value=6.9e-22  Score=131.68  Aligned_cols=104  Identities=20%  Similarity=0.407  Sum_probs=88.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCC--CCcccCHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLT--ANKVVSYETA   77 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~--~~~~~~~~~~   77 (144)
                      +||||+|+++     ..+++++|++++|||++++.+|..+..|+..+..... ...|+++|+||.|+.  ..+.+...++
T Consensus        50 ~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~  124 (158)
T cd04103          50 LIRDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARA  124 (158)
T ss_pred             EEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHH
Confidence            5899999975     3467889999999999999999999999999977653 468999999999984  3466777788


Q ss_pred             HHHHHHc-CCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           78 KAFADEI-GIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        78 ~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      .++++.. ++.++++||++|.|++++|+.+++.
T Consensus       125 ~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~  157 (158)
T cd04103         125 RQLCADMKRCSYYETCATYGLNVERVFQEAAQK  157 (158)
T ss_pred             HHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence            8888776 4899999999999999999998754

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.88  E-value=1.5e-21  Score=138.57  Aligned_cols=112  Identities=21%  Similarity=0.309  Sum_probs=95.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh---------cCCCCcEEEEEeCCCCCCCcc
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY---------ASDNVNKLLVGNKCDLTANKV   71 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---------~~~~~p~ilv~nK~Dl~~~~~   71 (144)
                      +||||+|+++|..++..++.++|++|+|||+++..+|+.+..|+..+...         ...+.|+++|+||+|+.....
T Consensus        51 ~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~  130 (247)
T cd04143          51 DILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE  130 (247)
T ss_pred             EEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc
Confidence            48999999999999999999999999999999999999999998888653         223689999999999976556


Q ss_pred             cCHHHHHHHHHH-cCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           72 VSYETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        72 ~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      +..+++.+++.. .++.++++||++|.|++++|++|+.....
T Consensus       131 v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~~~  172 (247)
T cd04143         131 VQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAKL  172 (247)
T ss_pred             cCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhcc
Confidence            667777666653 35789999999999999999999987753

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.88  E-value=1.1e-21  Score=131.14  Aligned_cols=111  Identities=32%  Similarity=0.469  Sum_probs=95.3

Q ss_pred             CceeccchhH-HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccCHHHH
Q 032243            1 MQWDTAGQER-FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA--SDNVNKLLVGNKCDLTANKVVSYETA   77 (144)
Q Consensus         1 qi~Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~   77 (144)
                      +||||+|+++ +...+..++.++|++++|||+++..+|+.+..|+..+....  ....|+++|+||+|+...+.+..+++
T Consensus        50 ~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~  129 (165)
T cd04146          50 EILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEG  129 (165)
T ss_pred             EEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHH
Confidence            5899999986 35567788999999999999999999999999988887654  34699999999999866666777788


Q ss_pred             HHHHHHcCCcEEEeecCCCC-CHHHHHHHHHHHHH
Q 032243           78 KAFADEIGIPFMETSAKDST-NVEQAFMAMAASIK  111 (144)
Q Consensus        78 ~~~~~~~~~~~~~~Sa~~~~-~i~~l~~~i~~~~~  111 (144)
                      ..+++..+.+++++||++|. |++++|+.+++.+.
T Consensus       130 ~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~  164 (165)
T cd04146         130 EKLASELGCLFFEVSAAEDYDGVHSVFHELCREVR  164 (165)
T ss_pred             HHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence            88888888999999999994 99999999988653

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.88  E-value=1.2e-21  Score=133.17  Aligned_cols=110  Identities=18%  Similarity=0.288  Sum_probs=85.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||||+++++.+|..|+.++|++|||||+++++++..+..++..+... ...+.|++|++||.|+...  ...++...
T Consensus        64 ~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~  141 (181)
T PLN00223         64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITD  141 (181)
T ss_pred             EEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHH
Confidence            58999999999999999999999999999999999999887777766432 2236899999999998643  22333332


Q ss_pred             HHHHc-----CCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           80 FADEI-----GIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        80 ~~~~~-----~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      .....     .+.++++||++|+|+.++|++|++.+..
T Consensus       142 ~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~  179 (181)
T PLN00223        142 KLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN  179 (181)
T ss_pred             HhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence            22111     1246689999999999999999988764

>cd04149 Arf6 Arf6 subfamily

Probab=99.88  E-value=8.6e-22  Score=132.41  Aligned_cols=106  Identities=21%  Similarity=0.333  Sum_probs=85.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||||+++|..+|+.++.++|++|||||++++.+|..+..|+..+... .....|++||+||.|+...  +..+++..
T Consensus        56 ~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~  133 (168)
T cd04149          56 NVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQE  133 (168)
T ss_pred             EEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHH
Confidence            58999999999999999999999999999999999999988877766543 2246899999999998532  34555555


Q ss_pred             HHHH-----cCCcEEEeecCCCCCHHHHHHHHHH
Q 032243           80 FADE-----IGIPFMETSAKDSTNVEQAFMAMAA  108 (144)
Q Consensus        80 ~~~~-----~~~~~~~~Sa~~~~~i~~l~~~i~~  108 (144)
                      ....     ..++++++||++|.|++++|++|.+
T Consensus       134 ~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         134 KLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             HcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence            4321     2247899999999999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.87  E-value=1.7e-21  Score=131.33  Aligned_cols=107  Identities=31%  Similarity=0.535  Sum_probs=92.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC-----------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA-----------   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~-----------   68 (144)
                      ++|||+|+++|..++..+++++|++++|||++++.+|+.+. .|+..+.... ...|+++++||.|+..           
T Consensus        51 ~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~  129 (173)
T cd04130          51 QLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARY  129 (173)
T ss_pred             EEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhc
Confidence            48999999999999999999999999999999999999885 5887776543 3589999999999853           


Q ss_pred             -CcccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHH
Q 032243           69 -NKVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAA  108 (144)
Q Consensus        69 -~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~  108 (144)
                       .+.+..+++..+++..+. +++++||++|.|++++|+.++.
T Consensus       130 ~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~  171 (173)
T cd04130         130 GEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL  171 (173)
T ss_pred             CCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence             345667788888888887 8999999999999999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.87  E-value=7.3e-22  Score=133.52  Aligned_cols=108  Identities=19%  Similarity=0.322  Sum_probs=84.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||||++++..+|..|++++|++|||||++++.++++...|+..+.... ....|++||+||.|+....  ...+...
T Consensus        60 ~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~  137 (175)
T smart00177       60 TVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITE  137 (175)
T ss_pred             EEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHH
Confidence            489999999999999999999999999999999999999888887775432 2368999999999985422  2233222


Q ss_pred             HHH-----HcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           80 FAD-----EIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        80 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      ...     ...+.++++||++|.|++++|++|...+
T Consensus       138 ~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      138 KLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             HhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            211     1123577899999999999999998765

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.86  E-value=8.5e-22  Score=131.28  Aligned_cols=106  Identities=20%  Similarity=0.316  Sum_probs=82.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||+|+++|..+|..++.++|+++||||++++.+|+.+..|+..+... .....|+++++||.|+.+.  ....+...
T Consensus        47 ~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~  124 (159)
T cd04150          47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTD  124 (159)
T ss_pred             EEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHH
Confidence            48999999999999999999999999999999999999988877776432 2235899999999998542  22223222


Q ss_pred             HHH-----HcCCcEEEeecCCCCCHHHHHHHHHH
Q 032243           80 FAD-----EIGIPFMETSAKDSTNVEQAFMAMAA  108 (144)
Q Consensus        80 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~  108 (144)
                      ...     ...+.++++||++|.|++++|++|.+
T Consensus       125 ~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150         125 KLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             HhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence            211     11245789999999999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04114 Rab30 Rab30 subfamily

Probab=99.86  E-value=1.3e-20  Score=126.13  Aligned_cols=110  Identities=49%  Similarity=0.845  Sum_probs=96.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||+|+++|...+..++..+|++++|||+++..++..+..|+..+........|+++++||.|+.....+.......+
T Consensus        59 ~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~  138 (169)
T cd04114          59 QIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEF  138 (169)
T ss_pred             EEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHH
Confidence            47999999999999999999999999999999999999998998888776655789999999999976666666666667


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      .+....+++++||++|.|+.++|+.+.+.+
T Consensus       139 ~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         139 SDAQDMYYLETSAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             HHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence            766678899999999999999999998764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.86  E-value=1.6e-20  Score=124.82  Aligned_cols=111  Identities=43%  Similarity=0.689  Sum_probs=97.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||+|+.++..++..+++++|++++|+|++++.+|..+..|+..+..... ...|+++++||+|+.............
T Consensus        51 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~  130 (164)
T cd04139          51 NILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAAN  130 (164)
T ss_pred             EEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHH
Confidence            4899999999999999999999999999999999999999998888876632 479999999999996644455666777


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +...++.+++++||++|.|++++|+.+.+.+.
T Consensus       131 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  162 (164)
T cd04139         131 LARQWGVPYVETSAKTRQNVEKAFYDLVREIR  162 (164)
T ss_pred             HHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            77788899999999999999999999988765

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.86  E-value=7.7e-22  Score=132.12  Aligned_cols=107  Identities=21%  Similarity=0.281  Sum_probs=87.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH----HH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY----ET   76 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~----~~   76 (144)
                      ++|||||+++|..+|+.+++++|++++|||++++.+|..+..|+..+.... .+.|+++|+||.|+.....+..    ..
T Consensus        47 ~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~  125 (164)
T cd04162          47 ELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELE  125 (164)
T ss_pred             EEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhC
Confidence            489999999999999999999999999999999999999888888876543 4699999999999865443221    12


Q ss_pred             HHHHHHHcCCcEEEeecCC------CCCHHHHHHHHHH
Q 032243           77 AKAFADEIGIPFMETSAKD------STNVEQAFMAMAA  108 (144)
Q Consensus        77 ~~~~~~~~~~~~~~~Sa~~------~~~i~~l~~~i~~  108 (144)
                      +..+++..++.++++||++      ++|++++|+.++.
T Consensus       126 ~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         126 LEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             ChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence            3344455578899999888      9999999998764

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd01862 Rab7 Rab7 subfamily

Probab=99.86  E-value=1.9e-20  Score=125.52  Aligned_cols=113  Identities=42%  Similarity=0.723  Sum_probs=97.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCcccCHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTANKVVSYET   76 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~   76 (144)
                      ++|||||++.|..++..+++++|++|+|||++++.++..+..|...+.....    ...|+++|+||+|+..+.....++
T Consensus        52 ~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~  131 (172)
T cd01862          52 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKK  131 (172)
T ss_pred             EEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHH
Confidence            4899999999999999999999999999999999999988888777655432    368999999999997555556777


Q ss_pred             HHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           77 AKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        77 ~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      ...+.+..+ .+++++||++|.|++++|+++.+.+.+.
T Consensus       132 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~  169 (172)
T cd01862         132 AQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALEQ  169 (172)
T ss_pred             HHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            777777777 7999999999999999999999988754

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04158 ARD1 ARD1 subfamily

Probab=99.86  E-value=5.3e-21  Score=128.53  Aligned_cols=110  Identities=15%  Similarity=0.259  Sum_probs=89.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||||+.++..+|..++.++|+++||+|++++.++.++..|+..+.... ....|+++++||.|+..  .+..+++..
T Consensus        46 ~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~  123 (169)
T cd04158          46 TIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTE  123 (169)
T ss_pred             EEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHH
Confidence            489999999999999999999999999999999999999988888886432 23589999999999853  244555555


Q ss_pred             HHHHcC------CcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           80 FADEIG------IPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        80 ~~~~~~------~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      ++...+      +.++++||++|.|++++|++|.+.+..
T Consensus       124 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~  162 (169)
T cd04158         124 LLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA  162 (169)
T ss_pred             HhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhh
Confidence            543222      367899999999999999999887653

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04148 RGK RGK subfamily

Probab=99.86  E-value=1.5e-20  Score=131.50  Aligned_cols=114  Identities=29%  Similarity=0.388  Sum_probs=95.5

Q ss_pred             CceeccchhHHhhhhhhhhc-CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYR-GAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAK   78 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~   78 (144)
                      +||||+|++.+  ....++. ++|++++|||++++.+|+.+..|+..+..... ...|+++|+||.|+.....+..++..
T Consensus        53 ~i~Dt~G~~~~--~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~  130 (221)
T cd04148          53 VVIDHWEQEMW--TEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGR  130 (221)
T ss_pred             EEEeCCCcchH--HHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHH
Confidence            48999999833  3345566 89999999999999999999999988876542 46999999999999776677777777


Q ss_pred             HHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243           79 AFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS  116 (144)
Q Consensus        79 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~  116 (144)
                      .++...+++++++||++|.|++++|++++..+......
T Consensus       131 ~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~~~~~  168 (221)
T cd04148         131 ACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRLRRDS  168 (221)
T ss_pred             HHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHhhhcc
Confidence            88888889999999999999999999999998754433

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04142 RRP22 RRP22 subfamily

Probab=99.86  E-value=7.6e-21  Score=131.01  Aligned_cols=112  Identities=21%  Similarity=0.256  Sum_probs=90.1

Q ss_pred             CceeccchhHH--------hhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQERF--------RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA---SDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~~~~--------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~   69 (144)
                      +||||+|..+|        ......++.++|+++||||++++.+|+.+..|+..+....   ...+|+++|+||.|+...
T Consensus        52 ~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~  131 (198)
T cd04142          52 HILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH  131 (198)
T ss_pred             EEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc
Confidence            48999986543        2223455789999999999999999999999988887653   356999999999999665


Q ss_pred             cccCHHHHHHHHH-HcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           70 KVVSYETAKAFAD-EIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        70 ~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      +.+..++...++. ..+++++++||++|.|++++|+.++..+..
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~  175 (198)
T cd04142         132 RFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISATT  175 (198)
T ss_pred             ccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhc
Confidence            5555666665554 457899999999999999999999988764

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.86  E-value=3.4e-21  Score=130.61  Aligned_cols=112  Identities=34%  Similarity=0.579  Sum_probs=99.8

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN----------   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~----------   69 (144)
                      .+|||+||++|++++...|.++|+++++|++.++.||+++. .|+..+.++++ ..|+++||+|.||.+.          
T Consensus        56 ~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp-~vpiiLVGtk~DLr~d~~~~~~l~~~  134 (198)
T KOG0393|consen   56 GLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCP-NVPIILVGTKADLRDDPSTLEKLQRQ  134 (198)
T ss_pred             eeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCC-CCCEEEEeehHHhhhCHHHHHHHHhc
Confidence            38999999999998888899999999999999999999984 59999999884 6999999999999742          


Q ss_pred             --cccCHHHHHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           70 --KVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        70 --~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                        ..+..+++..+++..| ..++++||+++.|++++|+..+......
T Consensus       135 ~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~  181 (198)
T KOG0393|consen  135 GLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRP  181 (198)
T ss_pred             cCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhcc
Confidence              3567788899999999 5899999999999999999999888753

>cd01863 Rab18 Rab18 subfamily

Probab=99.86  E-value=1.6e-20  Score=124.85  Aligned_cols=108  Identities=50%  Similarity=0.869  Sum_probs=95.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||+|+++|..++..+++++|++++|||++++.+|..+..|+..+..... ...|+++++||.|+.. ......+...
T Consensus        52 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~  130 (161)
T cd01863          52 AIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLK  130 (161)
T ss_pred             EEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHH
Confidence            4899999999999999999999999999999999999999999988876643 4789999999999863 3445677778


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      ++...+++++++||++|.|++++++.+...
T Consensus       131 ~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863         131 FARKHNMLFIETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             HHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence            888888999999999999999999998765

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04135 Tc10 TC10 subfamily

Probab=99.86  E-value=7.9e-21  Score=127.86  Aligned_cols=109  Identities=34%  Similarity=0.548  Sum_probs=93.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN----------   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~----------   69 (144)
                      ++|||+|+++|..++..++.++|++++|||++++.+|+.+. .|+..+... ....|+++++||.|+.+.          
T Consensus        51 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~  129 (174)
T cd04135          51 GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDM  129 (174)
T ss_pred             EEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhc
Confidence            48999999999999999999999999999999999999886 577777655 457999999999998542          


Q ss_pred             --cccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHH
Q 032243           70 --KVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        70 --~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                        ..++.+++..+++..+. +++++||++|.|++++|+.++..+
T Consensus       130 ~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         130 KEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             cCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence              24556777888888886 799999999999999999998765

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.86  E-value=2.9e-20  Score=127.62  Aligned_cols=115  Identities=41%  Similarity=0.608  Sum_probs=104.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      +|+||+|+++|..+...++.+.|++++||+++++.||+.+..++..+..... ..+|+++||||+|+...+.++.+++..
T Consensus        54 ~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~  133 (196)
T KOG0395|consen   54 EILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKA  133 (196)
T ss_pred             EEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHH
Confidence            3799999999999999999999999999999999999999999998844333 468999999999998878999999999


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA  115 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~  115 (144)
                      ++..++++++++||+.+.+++++|..+...+.....
T Consensus       134 la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~~~~  169 (196)
T KOG0395|consen  134 LARSWGCAFIETSAKLNYNVDEVFYELVREIRLPRE  169 (196)
T ss_pred             HHHhcCCcEEEeeccCCcCHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999999876333

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.85  E-value=5.9e-20  Score=124.32  Aligned_cols=112  Identities=38%  Similarity=0.588  Sum_probs=97.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||+|+++|..++..++..+|++++|||+++..+++.+..|+..+.... ....|+++++||+|+...+.+...+...
T Consensus        52 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~  131 (180)
T cd04137          52 EIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKE  131 (180)
T ss_pred             EEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHH
Confidence            489999999999999999999999999999999999999999888886653 2468999999999997655565666677


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      +....+.+++++||+++.|+.++|+++.+.+..
T Consensus       132 ~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  164 (180)
T cd04137         132 LAESWGAAFLESSARENENVEEAFELLIEEIEK  164 (180)
T ss_pred             HHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            777788899999999999999999999998864

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd00154 Rab Rab family

Probab=99.85  E-value=3e-20  Score=122.26  Aligned_cols=107  Identities=57%  Similarity=0.955  Sum_probs=96.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++||+||+.++...+..+++++|++++|+|++++.++..+..|+..+........|+++++||.|+........++...+
T Consensus        52 ~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~  131 (159)
T cd00154          52 QIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQF  131 (159)
T ss_pred             EEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHH
Confidence            48999999999999999999999999999999999999999999999887655689999999999964555567788888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMA  107 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~  107 (144)
                      ....+.+++++||+++.|+++++++|.
T Consensus       132 ~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         132 AKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             HHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            888889999999999999999999885

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd01892 Miro2 Miro2 subfamily

Probab=99.85  E-value=5.8e-21  Score=128.44  Aligned_cols=109  Identities=17%  Similarity=0.252  Sum_probs=90.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++||++|++++..++..+++++|++++|||++++.+|+.+..|+..+...  ...|+++|+||.|+.+.......+...+
T Consensus        57 ~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~  134 (169)
T cd01892          57 ILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEF  134 (169)
T ss_pred             EEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHH
Confidence            48999999999999999999999999999999999999988888765332  2589999999999865443333345566


Q ss_pred             HHHcCC-cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           81 ADEIGI-PFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        81 ~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ++..++ .++++||++|.|++++|+.+++.+.
T Consensus       135 ~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~  166 (169)
T cd01892         135 CRKLGLPPPLHFSSKLGDSSNELFTKLATAAQ  166 (169)
T ss_pred             HHHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence            777776 4699999999999999999998875

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00876 Ras Ras family

Probab=99.85  E-value=4.8e-20  Score=121.98  Aligned_cols=109  Identities=43%  Similarity=0.711  Sum_probs=97.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++||++|++++..++..+++++|++++|||++++.++.++..|+..+..... ...|+++++||+|+.....+..+++..
T Consensus        50 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~  129 (160)
T cd00876          50 DILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKA  129 (160)
T ss_pred             EEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHH
Confidence            4899999999999999999999999999999999999999999888877655 479999999999997656666778888


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      +....+.+++++||+++.|++++|++|.+.
T Consensus       130 ~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876         130 LAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             HHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            888888999999999999999999999865

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04154 Arl2 Arl2 subfamily

Probab=99.85  E-value=2e-20  Score=126.03  Aligned_cols=106  Identities=22%  Similarity=0.281  Sum_probs=85.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||||+++++.++..++.++|++++|||++++.+|.....|+..+... ...+.|+++|+||+|+....  ..++...
T Consensus        61 ~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~  138 (173)
T cd04154          61 NIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIRE  138 (173)
T ss_pred             EEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHH
Confidence            47999999999999999999999999999999999999888887777542 22468999999999985432  3444444


Q ss_pred             HHH-----HcCCcEEEeecCCCCCHHHHHHHHHH
Q 032243           80 FAD-----EIGIPFMETSAKDSTNVEQAFMAMAA  108 (144)
Q Consensus        80 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~  108 (144)
                      +..     ..+++++++||++|.|++++|+++++
T Consensus       139 ~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         139 ALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             HhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence            432     23468999999999999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.85  E-value=3.6e-20  Score=126.04  Aligned_cols=111  Identities=22%  Similarity=0.344  Sum_probs=85.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||||++++..+|..+++++|++|||+|++++.++.....++..+... .....|+++++||.|+...  ....+...
T Consensus        64 ~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~  141 (182)
T PTZ00133         64 TMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTE  141 (182)
T ss_pred             EEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHH
Confidence            48999999999999999999999999999999999999888777766432 2235899999999998532  22222222


Q ss_pred             HHH-----HcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           80 FAD-----EIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        80 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      ...     ...+.++++||++|.|+.++|++|...+...
T Consensus       142 ~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~  180 (182)
T PTZ00133        142 KLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKS  180 (182)
T ss_pred             HhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHHh
Confidence            111     1123567899999999999999999877653

>cd04129 Rho2 Rho2 subfamily

Probab=99.85  E-value=3.3e-20  Score=126.60  Aligned_cols=111  Identities=37%  Similarity=0.604  Sum_probs=93.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCC----------C
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTA----------N   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~----------~   69 (144)
                      ++|||+|+++|..+...++.++|+++++||+++.++|+.+. .|+..+....+ ..|+++|+||.|+..          .
T Consensus        52 ~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~-~~piilvgnK~Dl~~~~~~~~~~~~~  130 (187)
T cd04129          52 ALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLRQDAVAKEEYRTQ  130 (187)
T ss_pred             EEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEeeChhhhhCcccccccccC
Confidence            47999999999888778889999999999999999999986 58888876554 599999999999843          2


Q ss_pred             cccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           70 KVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        70 ~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      +.+..++...+++..+. +++++||++|.|++++|+++++.+..
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  174 (187)
T cd04129         131 RFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALL  174 (187)
T ss_pred             CcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhc
Confidence            33445667778888885 89999999999999999999988754

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.85  E-value=3.7e-20  Score=126.01  Aligned_cols=110  Identities=25%  Similarity=0.385  Sum_probs=88.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||+|+++|..+|..+++++|++++|+|+++..++..+..|+..+..... ...|+++++||.|+...  ....+...
T Consensus        55 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~  132 (183)
T cd04152          55 HFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEK  132 (183)
T ss_pred             EEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHH
Confidence            4899999999999999999999999999999999999988888877765432 36899999999998532  23344433


Q ss_pred             HHHH--c----CCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           80 FADE--I----GIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        80 ~~~~--~----~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      +...  .    +++++++||++|.|++++|++|.+.+..
T Consensus       133 ~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~  171 (183)
T cd04152         133 LLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILK  171 (183)
T ss_pred             HhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHH
Confidence            3321  1    2468899999999999999999998864

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.84  E-value=8.6e-20  Score=122.88  Aligned_cols=109  Identities=31%  Similarity=0.577  Sum_probs=90.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN----------   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~----------   69 (144)
                      +||||+|+++|..++..++.++|++++|||++++.+|+.+. .|+..+.... ...|+++++||.|+...          
T Consensus        52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~  130 (175)
T cd01870          52 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKM  130 (175)
T ss_pred             EEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhc
Confidence            48999999999999988999999999999999999999885 4777776543 36899999999998542          


Q ss_pred             --cccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHH
Q 032243           70 --KVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        70 --~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                        ..+...+...++...+. +++++||++|.|++++|+++...+
T Consensus       131 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         131 KQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             cCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence              12334566667777664 899999999999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04157 Arl6 Arl6 subfamily

Probab=99.84  E-value=5.7e-20  Score=122.09  Aligned_cols=106  Identities=22%  Similarity=0.308  Sum_probs=82.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCcccCHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA---SDNVNKLLVGNKCDLTANKVVSYETA   77 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~~~~~~~~   77 (144)
                      ++|||||+++|..+|+.++.++|+++||+|+++..++.....|+..+....   ....|+++++||+|+.+...  ..+.
T Consensus        48 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~  125 (162)
T cd04157          48 TAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKI  125 (162)
T ss_pred             EEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHH
Confidence            489999999999999999999999999999999999988888877765431   24689999999999854322  2222


Q ss_pred             HHHHH-----HcCCcEEEeecCCCCCHHHHHHHHHH
Q 032243           78 KAFAD-----EIGIPFMETSAKDSTNVEQAFMAMAA  108 (144)
Q Consensus        78 ~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~  108 (144)
                      .....     ...++++++||++|.|++++|++|.+
T Consensus       126 ~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         126 TQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             HHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence            22211     11246899999999999999999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.83  E-value=3.3e-20  Score=124.55  Aligned_cols=106  Identities=24%  Similarity=0.334  Sum_probs=84.8

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHH--
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETA--   77 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~--   77 (144)
                      ++|||||+++++.+|..|++++|+++||||+++..++..+..|+..+..... ...|+++|+||.|+.....  ..+.  
T Consensus        46 ~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~  123 (167)
T cd04161          46 CIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL--GADVIE  123 (167)
T ss_pred             EEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC--HHHHHH
Confidence            5899999999999999999999999999999999999999999888865432 3689999999999865432  2221  


Q ss_pred             ----HHHHHHcC--CcEEEeecCCC------CCHHHHHHHHHH
Q 032243           78 ----KAFADEIG--IPFMETSAKDS------TNVEQAFMAMAA  108 (144)
Q Consensus        78 ----~~~~~~~~--~~~~~~Sa~~~------~~i~~l~~~i~~  108 (144)
                          ..+++..+  +.++++||++|      .|+.+.|+||..
T Consensus       124 ~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         124 YLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             hcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence                12222222  46788999998      899999999974

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.83  E-value=3.5e-20  Score=122.64  Aligned_cols=115  Identities=31%  Similarity=0.577  Sum_probs=105.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||+||++|......|++++.+.++||+-+|..||+.+..|...+....+ .+|.++|-||+|+.....+...++..+
T Consensus        72 mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~l  150 (246)
T KOG4252|consen   72 MLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGL  150 (246)
T ss_pred             HHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHH
Confidence            5899999999999999999999999999999999999999999999977664 599999999999988878878888889


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS  116 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~  116 (144)
                      ++.++..++.+|++...|+..+|..++..+.++..+
T Consensus       151 ak~l~~RlyRtSvked~NV~~vF~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  151 AKKLHKRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQ  186 (246)
T ss_pred             HHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998766544

>cd04151 Arl1 Arl1 subfamily

Probab=99.83  E-value=3.5e-20  Score=123.08  Aligned_cols=106  Identities=22%  Similarity=0.287  Sum_probs=80.8

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||||+++|..+|+.+++++|++++|+|++++.++.....++..+.. ......|+++++||+|+.+..  ...+...
T Consensus        46 ~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~  123 (158)
T cd04151          46 QVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISE  123 (158)
T ss_pred             EEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHH
Confidence            5899999999999999999999999999999998888776665554433 222368999999999985432  1222221


Q ss_pred             HHH-----HcCCcEEEeecCCCCCHHHHHHHHHH
Q 032243           80 FAD-----EIGIPFMETSAKDSTNVEQAFMAMAA  108 (144)
Q Consensus        80 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~  108 (144)
                      ...     ..+++++++||++|.|++++|++|++
T Consensus       124 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151         124 KLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             HhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence            111     11246999999999999999999864

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd01893 Miro1 Miro1 subfamily

Probab=99.83  E-value=1.8e-19  Score=120.66  Aligned_cols=111  Identities=27%  Similarity=0.358  Sum_probs=87.8

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC--HHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETA   77 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~   77 (144)
                      ++|||+|++++...+..++.++|+++||||++++.+|+.+. .|+..+..... ..|+++++||+|+.+.....  ....
T Consensus        50 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~nK~Dl~~~~~~~~~~~~~  128 (166)
T cd01893          50 TIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKSDLRDGSSQAGLEEEM  128 (166)
T ss_pred             EEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEchhcccccchhHHHHHH
Confidence            48999999998888888899999999999999999999985 57777765543 68999999999996544321  2233


Q ss_pred             HHHHHHcC--CcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           78 KAFADEIG--IPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        78 ~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      ..+....+  .+++++||++|.|++++|+.+...+.+
T Consensus       129 ~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~~  165 (166)
T cd01893         129 LPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLH  165 (166)
T ss_pred             HHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhcC
Confidence            33333332  379999999999999999999888753

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.82  E-value=2.1e-19  Score=121.36  Aligned_cols=106  Identities=22%  Similarity=0.299  Sum_probs=83.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||||++++...|..+++++|+++||+|+++..++.....++..+.... ....|+++++||+|+...  ...++..+
T Consensus        62 ~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~  139 (174)
T cd04153          62 LMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISE  139 (174)
T ss_pred             EEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHH
Confidence            489999999999999999999999999999999999988877777664432 236899999999998542  22333222


Q ss_pred             HH-----HHcCCcEEEeecCCCCCHHHHHHHHHH
Q 032243           80 FA-----DEIGIPFMETSAKDSTNVEQAFMAMAA  108 (144)
Q Consensus        80 ~~-----~~~~~~~~~~Sa~~~~~i~~l~~~i~~  108 (144)
                      ..     ...+++++++||++|.|++++|++|.+
T Consensus       140 ~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         140 SLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             HhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence            21     123457899999999999999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.82  E-value=1e-19  Score=120.77  Aligned_cols=106  Identities=25%  Similarity=0.379  Sum_probs=83.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||+|++++..+|..++.++|++++|+|++++.++..+..|+..+.... ..+.|+++++||+|+...  ....+...
T Consensus        47 ~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~  124 (160)
T cd04156          47 TVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITR  124 (160)
T ss_pred             EEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHH
Confidence            489999999999999999999999999999999999998888877775432 246899999999998532  12233222


Q ss_pred             HH------HHcCCcEEEeecCCCCCHHHHHHHHHH
Q 032243           80 FA------DEIGIPFMETSAKDSTNVEQAFMAMAA  108 (144)
Q Consensus        80 ~~------~~~~~~~~~~Sa~~~~~i~~l~~~i~~  108 (144)
                      ..      ...+++++++||++|.|++++|++|..
T Consensus       125 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         125 RFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             HcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence            21      112347899999999999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.82  E-value=3e-19  Score=119.30  Aligned_cols=106  Identities=31%  Similarity=0.444  Sum_probs=85.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||||++++..++..++.++|+++||+|+++..++.....|+..+.... ..+.|+++++||+|+...  ....+...
T Consensus        53 ~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~  130 (167)
T cd04160          53 KFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKE  130 (167)
T ss_pred             EEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHH
Confidence            489999999999999999999999999999999888888888877775532 246899999999998543  23344444


Q ss_pred             HHHH-------cCCcEEEeecCCCCCHHHHHHHHHH
Q 032243           80 FADE-------IGIPFMETSAKDSTNVEQAFMAMAA  108 (144)
Q Consensus        80 ~~~~-------~~~~~~~~Sa~~~~~i~~l~~~i~~  108 (144)
                      +...       .+++++++||++|.|+++++++|.+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         131 VFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             HhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence            4332       2358999999999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00157 Rho Rho (Ras homology) family

Probab=99.81  E-value=3.2e-19  Score=119.44  Aligned_cols=107  Identities=36%  Similarity=0.600  Sum_probs=89.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCc---------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDLTANK---------   70 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~---------   70 (144)
                      ++|||||+++|..+...+++.+|++++|||++++.+|..... |+..+..... ..|+++|+||.|+....         
T Consensus        51 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~  129 (171)
T cd00157          51 GLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP-NVPIILVGTKIDLRDDENTLKKLEKG  129 (171)
T ss_pred             EEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEEccHHhhhchhhhhhcccC
Confidence            589999999998888888999999999999999999887654 6666665543 69999999999986543         


Q ss_pred             --ccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHH
Q 032243           71 --VVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAA  108 (144)
Q Consensus        71 --~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~  108 (144)
                        .+...+...+....+. +++++||++|.|++++|++|.+
T Consensus       130 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         130 KEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             CCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence              2345667777777777 9999999999999999998875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd00879 Sar1 Sar1 subfamily

Probab=99.80  E-value=6.7e-19  Score=120.17  Aligned_cols=107  Identities=26%  Similarity=0.352  Sum_probs=86.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||||+.++...|..++.++|++++|+|+++..++.....|+..+..... .+.|+++++||+|+..  .+..++...
T Consensus        66 ~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~  143 (190)
T cd00879          66 KTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQ  143 (190)
T ss_pred             EEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHH
Confidence            4799999999999999999999999999999999889888887777755332 4689999999999853  344555555


Q ss_pred             HHHH----------------cCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           80 FADE----------------IGIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        80 ~~~~----------------~~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      +...                ..++++++||++|+|++++|++|...
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         144 ALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             HhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence            4432                12468999999999999999999764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.80  E-value=6.5e-19  Score=116.78  Aligned_cols=106  Identities=24%  Similarity=0.325  Sum_probs=85.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||||++++...+..++.++|++++|||++++.++.....|+..+.... ....|+++++||+|+....  ...+...
T Consensus        46 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~  123 (158)
T cd00878          46 TVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIE  123 (158)
T ss_pred             EEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHH
Confidence            489999999999999999999999999999999999998888887775532 3468999999999986533  2333333


Q ss_pred             HHHH-----cCCcEEEeecCCCCCHHHHHHHHHH
Q 032243           80 FADE-----IGIPFMETSAKDSTNVEQAFMAMAA  108 (144)
Q Consensus        80 ~~~~-----~~~~~~~~Sa~~~~~i~~l~~~i~~  108 (144)
                      ....     ..++++++||++|.|++++|++|..
T Consensus       124 ~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878         124 KLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             hhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence            3221     2358999999999999999999864

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=3.5e-19  Score=118.33  Aligned_cols=110  Identities=22%  Similarity=0.330  Sum_probs=90.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++||++||++++++|++|+.+.+++|||+|++|+..+.+.+..+..+....+ ...|+++.+||+|+...-.  ..++..
T Consensus        64 ~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als--~~ei~~  141 (181)
T KOG0070|consen   64 TVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS--AAEITN  141 (181)
T ss_pred             EEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC--HHHHHh
Confidence            4899999999999999999999999999999999999998887777766554 5799999999999864322  333322


Q ss_pred             HH-----HHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           80 FA-----DEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        80 ~~-----~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      ..     ....|.+..++|.+|+|+.+.++++...+..
T Consensus       142 ~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~  179 (181)
T KOG0070|consen  142 KLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK  179 (181)
T ss_pred             HhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence            22     2234678899999999999999999988753

>cd01890 LepA LepA subfamily

Probab=99.79  E-value=1.6e-18  Score=117.04  Aligned_cols=104  Identities=22%  Similarity=0.282  Sum_probs=80.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||||+++|..++..++.++|++|+|+|+++..++.....|.... .   ...|+++++||+|+.....  ......+
T Consensus        70 ~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~---~~~~iiiv~NK~Dl~~~~~--~~~~~~~  143 (179)
T cd01890          70 NLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E---NNLEIIPVINKIDLPSADP--ERVKQQI  143 (179)
T ss_pred             EEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H---cCCCEEEEEECCCCCcCCH--HHHHHHH
Confidence            48999999999999999999999999999999876666555543322 1   2579999999999853221  2223445


Q ss_pred             HHHcCC---cEEEeecCCCCCHHHHHHHHHHHH
Q 032243           81 ADEIGI---PFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        81 ~~~~~~---~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      ++..++   .++++||++|.|++++|+++...+
T Consensus       144 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         144 EDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             HHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence            555555   489999999999999999998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.79  E-value=2.5e-18  Score=112.13  Aligned_cols=111  Identities=23%  Similarity=0.344  Sum_probs=90.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHH---
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYET---   76 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~---   76 (144)
                      ++||++||..+++.|++||+.+|++|+|||++|+..+++....+..+.... ....|++|++||.|+...  +..+.   
T Consensus        63 ~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~--l~~~~i~~  140 (185)
T KOG0073|consen   63 NIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA--LSLEEISK  140 (185)
T ss_pred             EEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc--cCHHHHHH
Confidence            589999999999999999999999999999999999998877776664421 135799999999998522  22222   


Q ss_pred             ---HHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           77 ---AKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        77 ---~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                         ...+++..+++++.|||.+|+++.+.++|+..-++.+
T Consensus       141 ~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~r  180 (185)
T KOG0073|consen  141 ALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMSR  180 (185)
T ss_pred             hhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHHH
Confidence               2334466678999999999999999999999988763

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.79  E-value=3e-18  Score=115.92  Aligned_cols=108  Identities=31%  Similarity=0.462  Sum_probs=86.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      .+||++|+..++++|+.|+.++|++|||+|+++...+.+....+..+... .....|+++++||+|+...  ....+...
T Consensus        61 ~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~  138 (175)
T PF00025_consen   61 TIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKE  138 (175)
T ss_dssp             EEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHH
T ss_pred             EEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHh
Confidence            38999999999999999999999999999999998888888777776543 2247999999999998542  33444443


Q ss_pred             HHH------HcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           80 FAD------EIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        80 ~~~------~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      ...      ...+.++.+||.+|+|+.+.++||.+.+
T Consensus       139 ~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  139 YLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             HTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             hhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence            322      1235689999999999999999998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.79  E-value=1.9e-18  Score=119.24  Aligned_cols=97  Identities=23%  Similarity=0.395  Sum_probs=80.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-------------------CCCCcEEEEE
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-------------------SDNVNKLLVG   61 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~p~ilv~   61 (144)
                      +||||+|+++|..++..|+.++|++|+|||++++.||+.+..|+..+....                   ...+|++|||
T Consensus        57 ~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVG  136 (202)
T cd04102          57 ELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIG  136 (202)
T ss_pred             EEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEE
Confidence            589999999999999999999999999999999999999999999986531                   2368999999


Q ss_pred             eCCCCCCCcccCHH----HHHHHHHHcCCcEEEeecCCCC
Q 032243           62 NKCDLTANKVVSYE----TAKAFADEIGIPFMETSAKDST   97 (144)
Q Consensus        62 nK~Dl~~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~   97 (144)
                      ||.|+.+.+.+...    ....+++..+++.+..++.++.
T Consensus       137 nK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~  176 (202)
T cd04102         137 TKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGR  176 (202)
T ss_pred             ECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCcc
Confidence            99999665444333    2345577788998888888664

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.79  E-value=2.6e-18  Score=117.04  Aligned_cols=107  Identities=20%  Similarity=0.265  Sum_probs=84.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||||+.++..+|..++.++|++++|+|++++.++.....++..+... ...+.|+++++||+|+..  .++.+++..
T Consensus        64 ~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~  141 (184)
T smart00178       64 TTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRY  141 (184)
T ss_pred             EEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHH
Confidence            37999999999999999999999999999999999998888777776543 223689999999999853  334444443


Q ss_pred             HHHH------------cCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           80 FADE------------IGIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        80 ~~~~------------~~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      ....            ..+.++++||++|.|+++++++|...
T Consensus       142 ~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      142 ALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             HcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence            3211            12368999999999999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.78  E-value=1.1e-17  Score=116.58  Aligned_cols=110  Identities=33%  Similarity=0.594  Sum_probs=93.8

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||+|+++|..++..++..++++++|||+++..+|..+..|+..+.... .+.|+++++||.|+... .+.. +...+
T Consensus        61 ~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~-~~~~~  137 (215)
T PTZ00132         61 NVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKA-RQITF  137 (215)
T ss_pred             EEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCH-HHHHH
Confidence            489999999999999999999999999999999999999999998887654 36899999999998543 3323 33456


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      .+..++.++++||++|.|++++|.+|++.+...
T Consensus       138 ~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~~  170 (215)
T PTZ00132        138 HRKKNLQYYDISAKSNYNFEKPFLWLARRLTND  170 (215)
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhhc
Confidence            677788999999999999999999999988753

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.75  E-value=2.1e-17  Score=121.79  Aligned_cols=112  Identities=17%  Similarity=0.205  Sum_probs=86.2

Q ss_pred             CceeccchhH-------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcc
Q 032243            1 MQWDTAGQER-------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKV   71 (144)
Q Consensus         1 qi~Dt~G~~~-------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~   71 (144)
                      +||||||..+       ....+..++++++++++|+|+++.++++++..|...+..+..  ...|+++|+||+|+.....
T Consensus       209 ~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~  288 (335)
T PRK12299        209 VIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEE  288 (335)
T ss_pred             EEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchh
Confidence            4899999732       222333456789999999999987789999899888877643  3689999999999865443


Q ss_pred             cCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           72 VSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      +.......+....+++++++||+++.|+++++++|...+..
T Consensus       289 ~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        289 EREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEE  329 (335)
T ss_pred             HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            32333444445566899999999999999999999998864

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.73  E-value=4.4e-17  Score=105.64  Aligned_cols=125  Identities=22%  Similarity=0.393  Sum_probs=105.8

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc-----CHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV-----SYET   76 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-----~~~~   76 (144)
                      |||.+|++++..+.+....++-+++|+||++.+.+++.+..|+...+..+...+| ++||+|.|+.-.-+.     -..+
T Consensus        73 IwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~q  151 (205)
T KOG1673|consen   73 IWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQ  151 (205)
T ss_pred             EEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHH
Confidence            7999999999999999999999999999999999999999999999888776666 678999998422111     1245


Q ss_pred             HHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCCCc
Q 032243           77 AKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPT  127 (144)
Q Consensus        77 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~  127 (144)
                      ++.+++.++.+.+.+|+..+.|+..+|..+...+....-..++-...+.|.
T Consensus       152 ar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAklFnL~~ti~~~~~iGdPi  202 (205)
T KOG1673|consen  152 ARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKLFNLPWTIPEILTIGDPI  202 (205)
T ss_pred             HHHHHHHhCCcEEEeeccccccHHHHHHHHHHHHhCCceecccccccCccc
Confidence            677888889999999999999999999999999988877777766665554

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.73  E-value=2.5e-17  Score=108.39  Aligned_cols=106  Identities=25%  Similarity=0.407  Sum_probs=82.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||+|+++|..++..++.++|++++|+|+++..++.....|+..+.... ....|+++++||.|+.+...  ..+...
T Consensus        47 ~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~  124 (159)
T cd04159          47 KVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIE  124 (159)
T ss_pred             EEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHH
Confidence            489999999999999999999999999999999988888777777664422 23689999999999864322  222221


Q ss_pred             HH-----HHcCCcEEEeecCCCCCHHHHHHHHHH
Q 032243           80 FA-----DEIGIPFMETSAKDSTNVEQAFMAMAA  108 (144)
Q Consensus        80 ~~-----~~~~~~~~~~Sa~~~~~i~~l~~~i~~  108 (144)
                      ..     ....++++++|+++|.|+++++++|..
T Consensus       125 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         125 QMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             HhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence            11     112357899999999999999999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01898 Obg Obg subfamily

Probab=99.73  E-value=3e-17  Score=109.81  Aligned_cols=108  Identities=19%  Similarity=0.286  Sum_probs=80.9

Q ss_pred             Cceeccchh----HHhhhhhhh---hcCCCEEEEEEeCCCH-HHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCc
Q 032243            1 MQWDTAGQE----RFRTITSSY---YRGAHGIIIVYDVTDQ-ESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANK   70 (144)
Q Consensus         1 qi~Dt~G~~----~~~~~~~~~---~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~   70 (144)
                      +||||||+.    ++..+...+   +.++|++++|+|+++. ++++.+..|...+.....  ...|+++|+||.|+.+..
T Consensus        51 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~  130 (170)
T cd01898          51 VVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEE  130 (170)
T ss_pred             EEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCch
Confidence            489999963    222333343   4469999999999998 788888888888866532  358999999999986544


Q ss_pred             ccCHHHHHHHHHH-cCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           71 VVSYETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        71 ~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      .. ......+... .+.+++++||+++.|++++|+++...
T Consensus       131 ~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         131 EL-FELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             hh-HHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence            43 3334444444 36789999999999999999998865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=2.9e-17  Score=104.81  Aligned_cols=109  Identities=20%  Similarity=0.356  Sum_probs=87.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++||+||+++.+++|++||.+.-++|||+|+.+.+..++.++.+..+... .....+++|.+||+|+.....  .+++..
T Consensus        64 NvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~--pqei~d  141 (180)
T KOG0071|consen   64 NVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK--PQEIQD  141 (180)
T ss_pred             eeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC--HHHHHH
Confidence            58999999999999999999999999999999999888887766666433 335789999999999965433  444444


Q ss_pred             HHH-----HcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           80 FAD-----EIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        80 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +.+     ...|.+.++||.+|+|+.+-|.|+...++
T Consensus       142 ~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~~  178 (180)
T KOG0071|consen  142 KLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNLK  178 (180)
T ss_pred             HhccccccCCccEeeccccccchhHHHHHHHHHhhcc
Confidence            432     23467889999999999999999987653

>PLN00023 GTP-binding protein; Provisional

Probab=99.72  E-value=4.8e-17  Score=118.36  Aligned_cols=86  Identities=23%  Similarity=0.560  Sum_probs=74.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC------------CCCcEEEEEeCCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS------------DNVNKLLVGNKCDLTA   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~p~ilv~nK~Dl~~   68 (144)
                      +||||+|+++|..++..|+.++|++|+|||++++.+|+.+..|+..+.....            ..+|++||+||.||..
T Consensus        86 qIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~  165 (334)
T PLN00023         86 ELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP  165 (334)
T ss_pred             EEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence            5899999999999999999999999999999999999999999999976531            2589999999999965


Q ss_pred             Cc---c---cCHHHHHHHHHHcCC
Q 032243           69 NK---V---VSYETAKAFADEIGI   86 (144)
Q Consensus        69 ~~---~---~~~~~~~~~~~~~~~   86 (144)
                      .+   .   +..+++.++++..++
T Consensus       166 ~~~~r~~s~~~~e~a~~~A~~~g~  189 (334)
T PLN00023        166 KEGTRGSSGNLVDAARQWVEKQGL  189 (334)
T ss_pred             cccccccccccHHHHHHHHHHcCC
Confidence            42   2   257888999998874

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.72  E-value=7.7e-17  Score=107.74  Aligned_cols=107  Identities=15%  Similarity=0.143  Sum_probs=75.1

Q ss_pred             CceeccchhHHh---------hhhhhhhcCCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQERFR---------TITSSYYRGAHGIIIVYDVTDQESF--NNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~~~~~---------~~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   69 (144)
                      +||||||+....         .........+|++++|+|+++..++  .....|+..+.... ...|+++++||.|+...
T Consensus        50 ~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~  128 (168)
T cd01897          50 QVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTF  128 (168)
T ss_pred             EEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCch
Confidence            489999984210         1111122346899999999886543  55556777665543 35899999999999654


Q ss_pred             cccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           70 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      ..+.  +...+....+++++++||++|.|++++|+++.+.+
T Consensus       129 ~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         129 EDLS--EIEEEEELEGEEVLKISTLTEEGVDEVKNKACELL  167 (168)
T ss_pred             hhHH--HHHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence            4332  23444555567999999999999999999998875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04171 SelB SelB subfamily

Probab=99.72  E-value=1.5e-16  Score=105.69  Aligned_cols=102  Identities=16%  Similarity=0.176  Sum_probs=72.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc--CHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYE   75 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~   75 (144)
                      ++|||||+++|......++.++|++++|+|+++   +.++..+    ..+....  ..|+++++||+|+......  ...
T Consensus        54 ~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~----~~~~~~~--~~~~ilv~NK~Dl~~~~~~~~~~~  127 (164)
T cd04171          54 GFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHL----EILELLG--IKRGLVVLTKADLVDEDWLELVEE  127 (164)
T ss_pred             EEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHH----HHHHHhC--CCcEEEEEECccccCHHHHHHHHH
Confidence            489999999998877788899999999999986   3333322    1122211  2489999999998643211  122


Q ss_pred             HHHHHHHH---cCCcEEEeecCCCCCHHHHHHHHHH
Q 032243           76 TAKAFADE---IGIPFMETSAKDSTNVEQAFMAMAA  108 (144)
Q Consensus        76 ~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~i~~  108 (144)
                      +.....+.   .+.+++++||+++.|++++++.+..
T Consensus       128 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         128 EIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             HHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence            33333333   3579999999999999999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.71  E-value=2.8e-17  Score=105.59  Aligned_cols=105  Identities=27%  Similarity=0.469  Sum_probs=83.4

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||.|||.+|+.+|+.|++.++++++|+|+.+++.+....+.+..+... .-..+|+++.|||.|+...  +..   ..+
T Consensus        69 lwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~---~~l  143 (186)
T KOG0075|consen   69 LWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSK---IAL  143 (186)
T ss_pred             EEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccH---HHH
Confidence            7999999999999999999999999999999988777666555555433 2347999999999998532  111   234


Q ss_pred             HHHcC--------CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           81 ADEIG--------IPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        81 ~~~~~--------~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ...+|        +.+|.+|++...+++.+.+|+.++-.
T Consensus       144 i~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk  182 (186)
T KOG0075|consen  144 IERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSK  182 (186)
T ss_pred             HHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence            44444        36899999999999999999998764

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.71  E-value=9.2e-17  Score=104.77  Aligned_cols=98  Identities=23%  Similarity=0.223  Sum_probs=73.8

Q ss_pred             Cceeccch-----hHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243            1 MQWDTAGQ-----ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE   75 (144)
Q Consensus         1 qi~Dt~G~-----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~   75 (144)
                      .+|||||+     ..|..+.. .++++|++++|||++++.++.. ..|....      ..|+++++||+|+.+ .....+
T Consensus        38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~  108 (142)
T TIGR02528        38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIE  108 (142)
T ss_pred             eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHH
Confidence            37999998     23444444 5899999999999999888754 2333321      249999999999854 233455


Q ss_pred             HHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHH
Q 032243           76 TAKAFADEIGI-PFMETSAKDSTNVEQAFMAMA  107 (144)
Q Consensus        76 ~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~  107 (144)
                      +...+++..+. +++++||++|.|++++|+++.
T Consensus       109 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528       109 RAKELLETAGAEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             HHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence            66667777775 899999999999999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04155 Arl3 Arl3 subfamily

Probab=99.70  E-value=5.7e-16  Score=104.03  Aligned_cols=103  Identities=22%  Similarity=0.312  Sum_probs=80.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      .+|||+|+.++...+..+++++|++++|+|+++..++.....++..+.... ...+|+++++||.|+.....  .++   
T Consensus        61 ~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~---  135 (173)
T cd04155          61 NVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEE---  135 (173)
T ss_pred             EEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHH---
Confidence            379999999999999999999999999999999888888777766664432 23689999999999854322  222   


Q ss_pred             HHHHcC--------CcEEEeecCCCCCHHHHHHHHHH
Q 032243           80 FADEIG--------IPFMETSAKDSTNVEQAFMAMAA  108 (144)
Q Consensus        80 ~~~~~~--------~~~~~~Sa~~~~~i~~l~~~i~~  108 (144)
                      +.+..+        ++++++||++|.|++++|++|.+
T Consensus       136 i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         136 IAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             HHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence            222222        24789999999999999999864

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.69  E-value=8.8e-17  Score=107.08  Aligned_cols=114  Identities=35%  Similarity=0.569  Sum_probs=96.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCCCcccC-HH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY----ASDNVNKLLVGNKCDLTANKVVS-YE   75 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~p~ilv~nK~Dl~~~~~~~-~~   75 (144)
                      |+||++||++|..|.+.|++.+++.++|||+++..+|+.+..|...+...    .....|+++..||+|........ ..
T Consensus        78 qLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~  157 (229)
T KOG4423|consen   78 QLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATR  157 (229)
T ss_pred             HHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHH
Confidence            68999999999999999999999999999999999999999999988443    22368889999999985432221 35


Q ss_pred             HHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           76 TAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        76 ~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      ...++.+++|+ .++++|++.+.++.|+.+.+++++....
T Consensus       158 ~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  158 QFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILVND  197 (229)
T ss_pred             HHHHHHhccCccceeeeccccccChhHHHHHHHHHHHhhc
Confidence            56677888886 8999999999999999999999987544

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=8.6e-17  Score=103.04  Aligned_cols=110  Identities=19%  Similarity=0.244  Sum_probs=82.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      |+||.+|+-..++.|+-||.+.|++|+|+|.+|.+...-....+..+... .......+|++||+|.....  ...++..
T Consensus        65 ~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~--t~~E~~~  142 (182)
T KOG0072|consen   65 QVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL--TRSEVLK  142 (182)
T ss_pred             eeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh--hHHHHHH
Confidence            68999999999999999999999999999999987665444444444322 22457788999999974221  1222211


Q ss_pred             -----HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           80 -----FADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        80 -----~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                           ..+...+.+|.+||.+|+|++++++|+.+-+++
T Consensus       143 ~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~  180 (182)
T KOG0072|consen  143 MLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKS  180 (182)
T ss_pred             HhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhc
Confidence                 122233789999999999999999999998864

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.68  E-value=6.3e-16  Score=102.11  Aligned_cols=103  Identities=16%  Similarity=0.173  Sum_probs=76.9

Q ss_pred             CceeccchhHHhh------hhhhhhc--CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243            1 MQWDTAGQERFRT------ITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         1 qi~Dt~G~~~~~~------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      ++|||||+.++..      ++..++.  ++|++++|+|.++.....   .++..+...   ..|+++++||.|+.+...+
T Consensus        46 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~---~~~~~~~~~---~~~~iiv~NK~Dl~~~~~~  119 (158)
T cd01879          46 EIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL---YLTLQLLEL---GLPVVVALNMIDEAEKRGI  119 (158)
T ss_pred             EEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH---HHHHHHHHc---CCCEEEEEehhhhcccccc
Confidence            4899999987654      3566664  999999999998754322   233333322   5899999999999654443


Q ss_pred             CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      . .....+....+.+++++||.++.|++++++++...+
T Consensus       120 ~-~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~~  156 (158)
T cd01879         120 K-IDLDKLSELLGVPVVPTSARKGEGIDELKDAIAELA  156 (158)
T ss_pred             h-hhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence            2 234456667788999999999999999999998764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.67  E-value=7.5e-16  Score=113.43  Aligned_cols=109  Identities=17%  Similarity=0.260  Sum_probs=81.2

Q ss_pred             CceeccchhH-------HhhhhhhhhcCCCEEEEEEeCCCH---HHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCC
Q 032243            1 MQWDTAGQER-------FRTITSSYYRGAHGIIIVYDVTDQ---ESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTA   68 (144)
Q Consensus         1 qi~Dt~G~~~-------~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~   68 (144)
                      +||||||+.+       ....+...++++|++++|+|+++.   ++++++..|...+..+..  ...|+++|+||+|+..
T Consensus       208 ~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~  287 (329)
T TIGR02729       208 VIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD  287 (329)
T ss_pred             EEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCC
Confidence            4899999742       222223345689999999999976   678888888777766542  3689999999999865


Q ss_pred             CcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           69 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      .... .+....+.+..+.+++++||+++.|+++++++|.+.+
T Consensus       288 ~~~~-~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       288 EEEL-AELLKELKKALGKPVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             hHHH-HHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence            4322 3334445556678999999999999999999998764

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=2.9e-16  Score=103.46  Aligned_cols=113  Identities=28%  Similarity=0.420  Sum_probs=89.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCH-HHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSY-ETAK   78 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~-~~~~   78 (144)
                      .|||.+||+..+++|..||..+|++|+++|+++++.|......+..+..... ...|+++.+||.|+.+...+.+ +...
T Consensus        72 ~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~  151 (197)
T KOG0076|consen   72 SFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVF  151 (197)
T ss_pred             EEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHh
Confidence            3899999999999999999999999999999999999887776666644432 5799999999999865433211 1122


Q ss_pred             HHHHHcC---CcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           79 AFADEIG---IPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        79 ~~~~~~~---~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      ..++..+   .++.++||.+|.|+++...|+...+...
T Consensus       152 ~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  152 GLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence            2233332   5899999999999999999999998643

>cd01878 HflX HflX subfamily

Probab=99.67  E-value=7.8e-16  Score=106.26  Aligned_cols=103  Identities=18%  Similarity=0.190  Sum_probs=76.6

Q ss_pred             Cceeccchh---------HHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 032243            1 MQWDTAGQE---------RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV   71 (144)
Q Consensus         1 qi~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~   71 (144)
                      +||||+|..         .|...+ ..+.++|++++|+|++++.++..+..|...+........|+++|+||+|+.+...
T Consensus        92 ~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~  170 (204)
T cd01878          92 LLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEE  170 (204)
T ss_pred             EEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHH
Confidence            489999972         233333 2367899999999999988887776666666554444689999999999865332


Q ss_pred             cCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           72 VSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      .     .......+.+++++||+++.|+++++++|...
T Consensus       171 ~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~  203 (204)
T cd01878         171 L-----EERLEAGRPDAVFISAKTGEGLDELLEAIEEL  203 (204)
T ss_pred             H-----HHHhhcCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence            2     12334455689999999999999999998765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.66  E-value=3.9e-15  Score=96.41  Aligned_cols=107  Identities=56%  Similarity=0.903  Sum_probs=83.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHH-HHhcCCCCcEEEEEeCCCCCCCcccCHHH-HH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYET-AK   78 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~-~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~-~~   78 (144)
                      .+||++|+..+...+..++..+|++++|+|++++.++.....|+... ........|+++++||.|+.......... ..
T Consensus        48 ~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~  127 (157)
T cd00882          48 QIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAE  127 (157)
T ss_pred             EEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHH
Confidence            38999999999988889999999999999999999888887763222 22333479999999999986544332222 33


Q ss_pred             HHHHHcCCcEEEeecCCCCCHHHHHHHHH
Q 032243           79 AFADEIGIPFMETSAKDSTNVEQAFMAMA  107 (144)
Q Consensus        79 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~  107 (144)
                      ......+.+++++|+.++.|+++++++|.
T Consensus       128 ~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         128 QLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             HHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            34445568999999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.66  E-value=9.8e-16  Score=105.95  Aligned_cols=108  Identities=19%  Similarity=0.218  Sum_probs=73.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC--HHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETAK   78 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~   78 (144)
                      +||||||+++|...+...+.++|++++|+|++++.........+..+....  ..|+++++||.|+.+.....  .+.+.
T Consensus        86 ~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~--~~~iiivvNK~Dl~~~~~~~~~~~~i~  163 (203)
T cd01888          86 SFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMG--LKHIIIVQNKIDLVKEEQALENYEQIK  163 (203)
T ss_pred             EEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcC--CCcEEEEEEchhccCHHHHHHHHHHHH
Confidence            489999999998888888889999999999987321111112222222221  24789999999986432210  12223


Q ss_pred             HHHHHc---CCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           79 AFADEI---GIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        79 ~~~~~~---~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      .+....   +++++++||++|.|++++++.|.+.+
T Consensus       164 ~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         164 KFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            333322   56899999999999999999998765

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.65  E-value=2.8e-15  Score=99.89  Aligned_cols=102  Identities=23%  Similarity=0.265  Sum_probs=74.7

Q ss_pred             ceeccch----hHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHH
Q 032243            2 QWDTAGQ----ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA   77 (144)
Q Consensus         2 i~Dt~G~----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~   77 (144)
                      +|||||+    .++.......+.++|++++|+|+++..++.  ..|+..+   . ...|+++++||.|+..   ......
T Consensus        41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~--~~~~~~~---~-~~~~ii~v~nK~Dl~~---~~~~~~  111 (158)
T PRK15467         41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRL--PAGLLDI---G-VSKRQIAVISKTDMPD---ADVAAT  111 (158)
T ss_pred             cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCccccc--CHHHHhc---c-CCCCeEEEEEccccCc---ccHHHH
Confidence            6999997    223222233478999999999999876553  2333332   1 2478999999999843   234556


Q ss_pred             HHHHHHcCC--cEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           78 KAFADEIGI--PFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        78 ~~~~~~~~~--~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      ..+++..++  +++++||++|.|++++|+.+.+.+.+
T Consensus       112 ~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~  148 (158)
T PRK15467        112 RKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQ  148 (158)
T ss_pred             HHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchh
Confidence            667777774  99999999999999999999888754

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.64  E-value=4.2e-15  Score=96.30  Aligned_cols=112  Identities=25%  Similarity=0.402  Sum_probs=97.6

Q ss_pred             CceeccchhHH-hhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243            1 MQWDTAGQERF-RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAK   78 (144)
Q Consensus         1 qi~Dt~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~   78 (144)
                      .|+||+|...+ ..+-++|+.-+|++++|||..++.||+.+..+...+....+ ..+|+++.+||.|+.++..+..+.+.
T Consensus        63 ~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~  142 (198)
T KOG3883|consen   63 RLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQ  142 (198)
T ss_pred             EEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHH
Confidence            37999998777 67789999999999999999999999988776666655433 47999999999999888888888999


Q ss_pred             HHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           79 AFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        79 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      .+++...+..++++|.+...+-+.|..+...+.+
T Consensus       143 ~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl~~  176 (198)
T KOG3883|consen  143 IWAKREKVKLWEVTAMDRPSLYEPFTYLASRLHQ  176 (198)
T ss_pred             HHHhhhheeEEEEEeccchhhhhHHHHHHHhccC
Confidence            9999999999999999999999999988887753

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.64  E-value=1.5e-15  Score=101.98  Aligned_cols=109  Identities=21%  Similarity=0.212  Sum_probs=77.0

Q ss_pred             CceeccchhH----Hhhhh---hhhhcCCCEEEEEEeCCCH------HHHHHHHHHHHHHHHhcC-------CCCcEEEE
Q 032243            1 MQWDTAGQER----FRTIT---SSYYRGAHGIIIVYDVTDQ------ESFNNVKQWLNEIDRYAS-------DNVNKLLV   60 (144)
Q Consensus         1 qi~Dt~G~~~----~~~~~---~~~~~~~d~~i~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~p~ilv   60 (144)
                      +||||||..+    ...++   ..++.++|++++|+|+++.      .++.++..|...+.....       ...|++++
T Consensus        47 ~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv  126 (176)
T cd01881          47 QVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYV  126 (176)
T ss_pred             EEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEE
Confidence            4899999732    22222   3346789999999999887      577777777777654432       25899999


Q ss_pred             EeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           61 GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        61 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      +||.|+..................+.+++++||+++.|++++++++...
T Consensus       127 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         127 LNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             EEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence            9999986544332221222333345689999999999999999988754

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.63  E-value=4.8e-15  Score=98.86  Aligned_cols=107  Identities=18%  Similarity=0.141  Sum_probs=73.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC-HHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS-YETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-~~~~~~   79 (144)
                      .+|||||+..|..++..++..+|++++|+|+++....... ..+..+..   ...|+++++||+|+....... ......
T Consensus        53 ~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~  128 (168)
T cd01887          53 TFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSE  128 (168)
T ss_pred             EEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHH
Confidence            4899999999999999999999999999999874221111 11222222   258999999999985322100 111111


Q ss_pred             HHH----Hc--CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           80 FAD----EI--GIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        80 ~~~----~~--~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +..    ..  .++++++||++|.|+++++++|.....
T Consensus       129 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  166 (168)
T cd01887         129 LGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE  166 (168)
T ss_pred             hhccccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence            111    11  258999999999999999999987753

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.63  E-value=4e-15  Score=116.96  Aligned_cols=105  Identities=19%  Similarity=0.265  Sum_probs=80.8

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||||+.+|...+..++..+|++++|+|+++..+......|...+.    .+.|+++++||+|+....  ......++
T Consensus        73 ~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el  146 (595)
T TIGR01393        73 NLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEI  146 (595)
T ss_pred             EEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHH
Confidence            489999999999999999999999999999998655555555544332    247999999999985321  12223344


Q ss_pred             HHHcCC---cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           81 ADEIGI---PFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        81 ~~~~~~---~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      .+..++   .++++||++|.|++++|+.|.+.+.
T Consensus       147 ~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp  180 (595)
T TIGR01393       147 EEVIGLDASEAILASAKTGIGIEEILEAIVKRVP  180 (595)
T ss_pred             HHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence            555555   4899999999999999999988763

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.63  E-value=1.5e-14  Score=100.73  Aligned_cols=114  Identities=39%  Similarity=0.602  Sum_probs=88.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCH-HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc--------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ-ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--------   71 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--------   71 (144)
                      ++|||+|+++|+.++..|+.+++++++++|.++. .+++....|...+........|+++++||+|+.....        
T Consensus        57 ~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~  136 (219)
T COG1100          57 QLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQ  136 (219)
T ss_pred             EeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhh
Confidence            4899999999999999999999999999999994 5555557788888777655689999999999976532        


Q ss_pred             ----cCHHHHHHHHHHc---CCcEEEeecC--CCCCHHHHHHHHHHHHHHhh
Q 032243           72 ----VSYETAKAFADEI---GIPFMETSAK--DSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        72 ----~~~~~~~~~~~~~---~~~~~~~Sa~--~~~~i~~l~~~i~~~~~~~~  114 (144)
                          .............   ...++++|++  .+.++.++|..+...+....
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~  188 (219)
T COG1100         137 LNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEI  188 (219)
T ss_pred             hhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHhh
Confidence                1122212222111   2358999999  99999999999999986543

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.62  E-value=3.8e-15  Score=102.18  Aligned_cols=98  Identities=16%  Similarity=0.172  Sum_probs=68.8

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc-cCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV-VSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~   79 (144)
                      +||||||+++|..++..++.++|++++|+|+++.. +.....++.....   ...|+++++||+|+..... ....+...
T Consensus        68 ~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~  143 (194)
T cd01891          68 NIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFD  143 (194)
T ss_pred             EEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHH
Confidence            48999999999999999999999999999998732 2223333333332   2589999999999854322 11233333


Q ss_pred             HHHH-------cCCcEEEeecCCCCCHHHH
Q 032243           80 FADE-------IGIPFMETSAKDSTNVEQA  102 (144)
Q Consensus        80 ~~~~-------~~~~~~~~Sa~~~~~i~~l  102 (144)
                      +...       .+++++++||++|.|+.+.
T Consensus       144 ~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~  173 (194)
T cd01891         144 LFIELGATEEQLDFPVLYASAKNGWASLNL  173 (194)
T ss_pred             HHHHhCCccccCccCEEEeehhcccccccc
Confidence            3322       3578999999999777433

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.62  E-value=1.1e-14  Score=96.95  Aligned_cols=103  Identities=20%  Similarity=0.288  Sum_probs=82.8

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA   81 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~   81 (144)
                      |+|||||+||+.||..++++++++|+++|.+.+..+ ....++..+....  .+|++|..||+||.+...  .+++..+.
T Consensus        72 LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~p--pe~i~e~l  146 (187)
T COG2229          72 LFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDALP--PEKIREAL  146 (187)
T ss_pred             EecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCCCC--HHHHHHHH
Confidence            689999999999999999999999999999998887 3344455554443  289999999999976543  45555555


Q ss_pred             HHc--CCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           82 DEI--GIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        82 ~~~--~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      +..  ..++++.+|..+.+..+.++.+...
T Consensus       147 ~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         147 KLELLSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             HhccCCCceeeeecccchhHHHHHHHHHhh
Confidence            544  7899999999999999988877665

>PRK04213 GTP-binding protein; Provisional

Probab=99.61  E-value=1.3e-15  Score=104.95  Aligned_cols=104  Identities=18%  Similarity=0.226  Sum_probs=71.2

Q ss_pred             Cceeccc-----------hhHHhhhhhhhhc----CCCEEEEEEeCCCHHHH-H---------HHHHHHHHHHHhcCCCC
Q 032243            1 MQWDTAG-----------QERFRTITSSYYR----GAHGIIIVYDVTDQESF-N---------NVKQWLNEIDRYASDNV   55 (144)
Q Consensus         1 qi~Dt~G-----------~~~~~~~~~~~~~----~~d~~i~v~d~~~~~s~-~---------~~~~~~~~~~~~~~~~~   55 (144)
                      ++|||||           +++++.++..++.    .++++++|+|.++...+ +         ....++..+..   ...
T Consensus        55 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~  131 (201)
T PRK04213         55 ILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGI  131 (201)
T ss_pred             EEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCC
Confidence            4899999           6888888877764    35788899987653211 0         00111222222   258


Q ss_pred             cEEEEEeCCCCCCCcccCHHHHHHHHHHcCC---------cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           56 NKLLVGNKCDLTANKVVSYETAKAFADEIGI---------PFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        56 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      |+++|+||+|+.+..   .+....+.+..++         +++++||++| |+++++++|.+.+.
T Consensus       132 p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~  192 (201)
T PRK04213        132 PPIVAVNKMDKIKNR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH  192 (201)
T ss_pred             CeEEEEECccccCcH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence            999999999985432   2344455555554         5899999999 99999999998764

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.59  E-value=2.5e-14  Score=106.22  Aligned_cols=102  Identities=23%  Similarity=0.249  Sum_probs=74.0

Q ss_pred             Cceeccch---------hHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 032243            1 MQWDTAGQ---------ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV   71 (144)
Q Consensus         1 qi~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~   71 (144)
                      +||||+|.         +.|...+. .+.++|++++|+|++++.++..+..|...+......+.|+++|+||+|+.+...
T Consensus       240 ~l~DT~G~~~~l~~~lie~f~~tle-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~  318 (351)
T TIGR03156       240 LLTDTVGFIRDLPHELVAAFRATLE-EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR  318 (351)
T ss_pred             EEEecCcccccCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh
Confidence            48999997         33444443 478999999999999988777766665555444334689999999999854221


Q ss_pred             cCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           72 VSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                           .... .....+++++||++|.|++++++.|...
T Consensus       319 -----v~~~-~~~~~~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       319 -----IERL-EEGYPEAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             -----HHHH-HhCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence                 1111 1222468999999999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.59  E-value=7e-15  Score=104.37  Aligned_cols=96  Identities=24%  Similarity=0.331  Sum_probs=78.3

Q ss_pred             hHHhhhhhhhhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCc
Q 032243            9 ERFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIP   87 (144)
Q Consensus         9 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~   87 (144)
                      ++|+.+.+.++.++|++++|||++++. +++.+..|+..+..   .++|+++|+||.||.+...+..+... .....+++
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~-~~~~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLD-IYRNIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHH-HHHHCCCe
Confidence            788899999999999999999999876 89999999886654   35899999999999654443223333 34457889


Q ss_pred             EEEeecCCCCCHHHHHHHHHH
Q 032243           88 FMETSAKDSTNVEQAFMAMAA  108 (144)
Q Consensus        88 ~~~~Sa~~~~~i~~l~~~i~~  108 (144)
                      ++.+||++|.|++++|+.+..
T Consensus       100 v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcC
Confidence            999999999999999998763

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.58  E-value=2.5e-14  Score=93.61  Aligned_cols=106  Identities=34%  Similarity=0.453  Sum_probs=80.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCH-HHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ-ESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK   78 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~   78 (144)
                      ++|||+|+.++..++..++..++++++++|.... .++.... .|...+........|+++++||.|+.... .......
T Consensus        53 ~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~  131 (161)
T TIGR00231        53 NLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAF  131 (161)
T ss_pred             EEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHH
Confidence            4799999999999999999999999999998876 6666554 56655555443368999999999986533 2222223


Q ss_pred             HHHHHcCCcEEEeecCCCCCHHHHHHHHH
Q 032243           79 AFADEIGIPFMETSAKDSTNVEQAFMAMA  107 (144)
Q Consensus        79 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~  107 (144)
                      .+......+++++||.+|.|+.+++++|.
T Consensus       132 ~~~~~~~~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       132 LFAKLNGEPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             HHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence            23333346899999999999999999863

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.58  E-value=5.8e-15  Score=113.66  Aligned_cols=114  Identities=18%  Similarity=0.161  Sum_probs=77.3

Q ss_pred             Cceeccch----------hHHhhhh-hhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQ----------ERFRTIT-SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~----------~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   69 (144)
                      +||||||.          +.|..+. ..+++++|++++|+|+++..++.++. ++..+..   ...|+++|+||+|+...
T Consensus       262 ~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~  337 (472)
T PRK03003        262 RFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDE  337 (472)
T ss_pred             EEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCCh
Confidence            48999995          3444433 34678999999999999887777653 3443433   35899999999999642


Q ss_pred             cccC--HHHHHHHHHH-cCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCC
Q 032243           70 KVVS--YETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP  118 (144)
Q Consensus        70 ~~~~--~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~  118 (144)
                      ....  ..+....... ...+++++||++|.|++++|+.+...+.......+
T Consensus       338 ~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~  389 (472)
T PRK03003        338 DRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWDTRIP  389 (472)
T ss_pred             hHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcccCC
Confidence            2110  1111111111 22589999999999999999999988865544433

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.57  E-value=4.7e-14  Score=95.59  Aligned_cols=106  Identities=19%  Similarity=0.222  Sum_probs=77.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC--HHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETAK   78 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~   78 (144)
                      +||||||+.++...+..++..+|++++|+|+++..+... ..++.....   ...|+++++||.|+..+....  .....
T Consensus        65 ~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~  140 (189)
T cd00881          65 NFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIK  140 (189)
T ss_pred             EEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHH
Confidence            489999999999999999999999999999987544332 233333333   358999999999986532211  12222


Q ss_pred             HHHHH--------------cCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           79 AFADE--------------IGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        79 ~~~~~--------------~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      .....              ...+++++||++|.|++++++++...+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         141 ELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             HHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence            23322              246899999999999999999998875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.57  E-value=5.9e-14  Score=106.24  Aligned_cols=109  Identities=17%  Similarity=0.256  Sum_probs=81.9

Q ss_pred             CceeccchhH----Hhhhhhh---hhcCCCEEEEEEeCCCH---HHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCC
Q 032243            1 MQWDTAGQER----FRTITSS---YYRGAHGIIIVYDVTDQ---ESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTA   68 (144)
Q Consensus         1 qi~Dt~G~~~----~~~~~~~---~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~   68 (144)
                      .||||||..+    ...+...   .+++++++++|+|+++.   ++++++..|...+..+.+  ...|++||+||+|+..
T Consensus       209 ~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~  288 (424)
T PRK12297        209 VMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE  288 (424)
T ss_pred             EEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC
Confidence            4799999732    2223333   35679999999999864   677777788887776643  3689999999999832


Q ss_pred             CcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           69 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      .    .+....+.+..+.+++++||+++.|+++++++|...+...
T Consensus       289 ~----~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~~  329 (424)
T PRK12297        289 A----EENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEET  329 (424)
T ss_pred             C----HHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            1    3344556666668899999999999999999999888654

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.57  E-value=2.5e-15  Score=96.17  Aligned_cols=108  Identities=27%  Similarity=0.327  Sum_probs=83.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++||++||...++.|..||++.|++|+|+|++|+..|+++..-+..+... .....|+.+..||+|+.....++ +.+..
T Consensus        65 nvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~e-eia~k  143 (185)
T KOG0074|consen   65 NVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVE-EIALK  143 (185)
T ss_pred             EEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchH-HHHHh
Confidence            48999999999999999999999999999999999999886655555333 22479999999999997654432 22211


Q ss_pred             H----HHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           80 F----ADEIGIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        80 ~----~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      +    .+...|.+-++||.++.|+.+-.+++..-
T Consensus       144 lnl~~lrdRswhIq~csals~eg~~dg~~wv~sn  177 (185)
T KOG0074|consen  144 LNLAGLRDRSWHIQECSALSLEGSTDGSDWVQSN  177 (185)
T ss_pred             cchhhhhhceEEeeeCccccccCccCcchhhhcC
Confidence            1    22234678899999999999999887643

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.57  E-value=3.7e-14  Score=111.64  Aligned_cols=105  Identities=23%  Similarity=0.272  Sum_probs=78.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||||+.+|...+..++..+|++|+|+|+++.........|.... .   .+.|+++++||+|+.....  ......+
T Consensus        77 nLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~---~~lpiIvViNKiDl~~a~~--~~v~~ei  150 (600)
T PRK05433         77 NLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E---NDLEIIPVLNKIDLPAADP--ERVKQEI  150 (600)
T ss_pred             EEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H---CCCCEEEEEECCCCCcccH--HHHHHHH
Confidence            48999999999999999999999999999998754444444433222 1   2579999999999853221  2222334


Q ss_pred             HHHcCC---cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           81 ADEIGI---PFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        81 ~~~~~~---~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ....++   .++++||++|.|+++++++|...+.
T Consensus       151 ~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp  184 (600)
T PRK05433        151 EDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIP  184 (600)
T ss_pred             HHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            444555   4899999999999999999988764

>cd01889 SelB_euk SelB subfamily

Probab=99.56  E-value=6.4e-14  Score=95.94  Aligned_cols=107  Identities=17%  Similarity=0.075  Sum_probs=71.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc--CHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETAK   78 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~   78 (144)
                      ++|||||+..+..........+|++++|+|+++.........+.  +....  ..|+++++||+|+......  ..++..
T Consensus        71 ~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~  146 (192)
T cd01889          71 TLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL--CKKLIVVLNKIDLIPEEERERKIEKMK  146 (192)
T ss_pred             EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc--CCCEEEEEECcccCCHHHHHHHHHHHH
Confidence            48999999876554444466789999999998743333322221  11222  4799999999998643221  112222


Q ss_pred             HHHH-------HcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           79 AFAD-------EIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        79 ~~~~-------~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ....       ..+++++++||++|.|++++++.+.+.+.
T Consensus       147 ~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         147 KKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             HHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence            2111       13578999999999999999999988775

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd01894 EngA1 EngA1 subfamily

Probab=99.56  E-value=3.7e-14  Score=93.33  Aligned_cols=99  Identities=18%  Similarity=0.091  Sum_probs=69.7

Q ss_pred             ceeccchhHHhh--------hhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC
Q 032243            2 QWDTAGQERFRT--------ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS   73 (144)
Q Consensus         2 i~Dt~G~~~~~~--------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~   73 (144)
                      +|||||...+..        .+..++.++|++++|+|..+..+.... .+...+...   ..|+++++||+|+...... 
T Consensus        49 i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~---~~piiiv~nK~D~~~~~~~-  123 (157)
T cd01894          49 LIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE-EIAKYLRKS---KKPVILVVNKVDNIKEEDE-  123 (157)
T ss_pred             EEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH-HHHHHHHhc---CCCEEEEEECcccCChHHH-
Confidence            799999876443        345667889999999998765433322 122222222   4899999999998643221 


Q ss_pred             HHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHH
Q 032243           74 YETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        74 ~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                          .......+. +++++|++++.|++++++++.+.
T Consensus       124 ----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (157)
T cd01894         124 ----AAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL  156 (157)
T ss_pred             ----HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence                223334565 78999999999999999999865

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.55  E-value=9.3e-14  Score=106.63  Aligned_cols=114  Identities=18%  Similarity=0.212  Sum_probs=78.5

Q ss_pred             CceeccchhH----Hh---hhhhhhhcCCCEEEEEEeCCC----HHHHHHHHHHHHHHHHhcC-----------CCCcEE
Q 032243            1 MQWDTAGQER----FR---TITSSYYRGAHGIIIVYDVTD----QESFNNVKQWLNEIDRYAS-----------DNVNKL   58 (144)
Q Consensus         1 qi~Dt~G~~~----~~---~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~-----------~~~p~i   58 (144)
                      +||||||...    ..   ...-.+++++|++|+|+|+++    .+++.++..+...+..+..           ...|++
T Consensus       209 ~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~I  288 (500)
T PRK12296        209 TVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRL  288 (500)
T ss_pred             EEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEE
Confidence            4899999631    11   111224688999999999975    3455555555555544431           358999


Q ss_pred             EEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243           59 LVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA  115 (144)
Q Consensus        59 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~  115 (144)
                      ||+||+|+...... .+.........+++++++||+++.|+++++.+|...+.....
T Consensus       289 VVlNKiDL~da~el-~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~  344 (500)
T PRK12296        289 VVLNKIDVPDAREL-AEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEARA  344 (500)
T ss_pred             EEEECccchhhHHH-HHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence            99999998543322 222233344557899999999999999999999999876543

>TIGR00436 era GTP-binding protein Era

Probab=99.55  E-value=9.1e-14  Score=100.04  Aligned_cols=105  Identities=16%  Similarity=0.074  Sum_probs=73.0

Q ss_pred             CceeccchhHH--------hhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243            1 MQWDTAGQERF--------RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         1 qi~Dt~G~~~~--------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      .||||||....        ......++.++|++++|+|+++..+..  ..++..+..   ...|+++|+||+|+......
T Consensus        51 i~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~  125 (270)
T TIGR00436        51 IFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDKL  125 (270)
T ss_pred             EEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHHH
Confidence            37999997431        222456678999999999998866553  233333332   25899999999998543222


Q ss_pred             CHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           73 SYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        73 ~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                       ......+....+. +++++||++|.|++++++.+...+.
T Consensus       126 -~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~  164 (270)
T TIGR00436       126 -LPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLP  164 (270)
T ss_pred             -HHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCC
Confidence             2333344444444 7999999999999999999988763

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK15494 era GTPase Era; Provisional

Probab=99.54  E-value=8.8e-14  Score=103.01  Aligned_cols=103  Identities=20%  Similarity=0.296  Sum_probs=71.1

Q ss_pred             CceeccchhH-Hhh-------hhhhhhcCCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 032243            1 MQWDTAGQER-FRT-------ITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDLTANKV   71 (144)
Q Consensus         1 qi~Dt~G~~~-~~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~   71 (144)
                      +||||||+.+ +..       ....++.++|+++||+|..+  ++..... |+..+...   ..|.++|+||+|+.+.  
T Consensus       103 ~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~--  175 (339)
T PRK15494        103 ILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL---NIVPIFLLNKIDIESK--  175 (339)
T ss_pred             EEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc--
Confidence            4899999842 222       12234789999999999765  3444433 44444332   3677899999998532  


Q ss_pred             cCHHHHHHHHHHcC--CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           72 VSYETAKAFADEIG--IPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        72 ~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                       ...+...++...+  ..++++||++|.|+++++++|...+.
T Consensus       176 -~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~  216 (339)
T PRK15494        176 -YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAK  216 (339)
T ss_pred             -cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCC
Confidence             2344445554443  57999999999999999999988764

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.53  E-value=3.6e-14  Score=108.03  Aligned_cols=109  Identities=21%  Similarity=0.192  Sum_probs=73.4

Q ss_pred             CceeccchhHHhhh-----------hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQERFRTI-----------TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~-----------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   69 (144)
                      .+|||||..++...           ...++.++|++++|+|+++..+..+. .++..+..   ...|+++++||+|+...
T Consensus       223 ~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~  298 (429)
T TIGR03594       223 LLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDL-RIAGLILE---AGKALVIVVNKWDLVKD  298 (429)
T ss_pred             EEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---cCCcEEEEEECcccCCC
Confidence            48999997543221           13467899999999999987665553 23333322   25899999999999621


Q ss_pred             cccCHHHHHHHH-HHc----CCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           70 KVVSYETAKAFA-DEI----GIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        70 ~~~~~~~~~~~~-~~~----~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      .. ...+..... ..+    ..+++++||++|.|++++|+++........
T Consensus       299 ~~-~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~  347 (429)
T TIGR03594       299 EK-TREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENAN  347 (429)
T ss_pred             HH-HHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            11 112222222 222    368999999999999999999998876543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.52  E-value=1.4e-13  Score=108.10  Aligned_cols=105  Identities=15%  Similarity=0.192  Sum_probs=78.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcccC--H
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVVS--Y   74 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~--~   74 (144)
                      +||||||+++|...+..++.++|++++|+|+++   +.+++.+.    .+.. .  .+| +++++||+|+.+...+.  .
T Consensus        53 ~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~----il~~-l--gi~~iIVVlNK~Dlv~~~~~~~~~  125 (581)
T TIGR00475        53 GFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLA----VLDL-L--GIPHTIVVITKADRVNEEEIKRTE  125 (581)
T ss_pred             EEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHH----HHHH-c--CCCeEEEEEECCCCCCHHHHHHHH
Confidence            489999999999998889999999999999987   34443321    2222 1  466 99999999996543221  2


Q ss_pred             HHHHHHHHHc----CCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           75 ETAKAFADEI----GIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        75 ~~~~~~~~~~----~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      +++..+.+..    +++++++||++|.|++++++.+...+..
T Consensus       126 ~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       126 MFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLES  167 (581)
T ss_pred             HHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence            3344444443    4689999999999999999988877654

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.51  E-value=1.3e-13  Score=108.16  Aligned_cols=101  Identities=18%  Similarity=0.208  Sum_probs=72.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      .||||||+++|..++...+..+|++++|+|+++....... ..+.....   .+.|+++++||+|+...   ..+.....
T Consensus       138 ~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~-e~i~~~~~---~~vPiIVviNKiDl~~~---~~e~v~~~  210 (587)
T TIGR00487       138 TFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTI-EAISHAKA---ANVPIIVAINKIDKPEA---NPDRVKQE  210 (587)
T ss_pred             EEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHH-HHHHHHHH---cCCCEEEEEECcccccC---CHHHHHHH
Confidence            4899999999999999999999999999998863211111 11222221   25899999999998532   23333333


Q ss_pred             HHHcC---------CcEEEeecCCCCCHHHHHHHHHH
Q 032243           81 ADEIG---------IPFMETSAKDSTNVEQAFMAMAA  108 (144)
Q Consensus        81 ~~~~~---------~~~~~~Sa~~~~~i~~l~~~i~~  108 (144)
                      +...+         .+++++||++|.|+.++++++..
T Consensus       211 L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       211 LSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             HHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence            32222         47999999999999999999864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.51  E-value=6.6e-14  Score=107.10  Aligned_cols=98  Identities=20%  Similarity=0.196  Sum_probs=73.4

Q ss_pred             CceeccchhHHhhh--------hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243            1 MQWDTAGQERFRTI--------TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         1 qi~Dt~G~~~~~~~--------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      ++|||+|.+++...        ...++.++|++++|+|++++.++.+...|..      ....|+++|+||+|+.+....
T Consensus       266 ~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~  339 (449)
T PRK05291        266 RLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDL  339 (449)
T ss_pred             EEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchh
Confidence            48999998654322        2346889999999999998877765443332      235899999999998643222


Q ss_pred             CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      .        ...+.+++++||++|.|+++++++|.+.+..
T Consensus       340 ~--------~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        340 E--------EENGKPVIRISAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             h--------hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence            1        2345689999999999999999999998854

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.51  E-value=1.2e-13  Score=90.74  Aligned_cols=97  Identities=19%  Similarity=0.159  Sum_probs=71.0

Q ss_pred             CceeccchhHHhh--------hhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243            1 MQWDTAGQERFRT--------ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         1 qi~Dt~G~~~~~~--------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      ++|||||...+..        ....++.++|++++|+|++++.+......+..      ....|+++++||+|+.+....
T Consensus        52 ~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~  125 (157)
T cd04164          52 RLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL  125 (157)
T ss_pred             EEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc
Confidence            4899999654321        23345779999999999998766665443322      235899999999998654332


Q ss_pred             CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                             .....+.+++++||+++.|+++++++|...+
T Consensus       126 -------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         126 -------LSLLAGKPIIAISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             -------ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence                   2333456899999999999999999988764

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.51  E-value=1.5e-13  Score=104.88  Aligned_cols=102  Identities=20%  Similarity=0.209  Sum_probs=76.6

Q ss_pred             CceeccchhHHhhh--------hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243            1 MQWDTAGQERFRTI--------TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         1 qi~Dt~G~~~~~~~--------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      ++|||||+.++...        ...+++++|++++|||++++.+++..  |+..+..   ...|+++|+||.|+...   
T Consensus       254 ~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~---  325 (442)
T TIGR00450       254 KLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN---  325 (442)
T ss_pred             EEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc---
Confidence            48999998554322        34678899999999999988777664  5554432   25799999999998532   


Q ss_pred             CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                         +...+....+.+++.+||++ .|++++|+.+...+....
T Consensus       326 ---~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~~  363 (442)
T TIGR00450       326 ---SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAFY  363 (442)
T ss_pred             ---chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHHh
Confidence               12234556677899999998 699999999999887654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.50  E-value=1e-13  Score=109.03  Aligned_cols=103  Identities=18%  Similarity=0.218  Sum_probs=76.0

Q ss_pred             CceeccchhHHhhh------hhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243            1 MQWDTAGQERFRTI------TSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         1 qi~Dt~G~~~~~~~------~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      ++|||||+.++...      .+.++  +++|++++|+|.++.+.   ...+...+..   .+.|+++++||.|+.+...+
T Consensus        44 ~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler---~l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~i  117 (591)
T TIGR00437        44 EIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLER---NLYLTLQLLE---LGIPMILALNLVDEAEKKGI  117 (591)
T ss_pred             EEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchh---hHHHHHHHHh---cCCCEEEEEehhHHHHhCCC
Confidence            48999999876543      45554  37999999999987432   1222222222   35899999999998654444


Q ss_pred             CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      . .+...+.+..+.+++++||++|.|++++++.+.+..
T Consensus       118 ~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       118 R-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI  154 (591)
T ss_pred             h-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            2 345677888899999999999999999999998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.50  E-value=1.5e-13  Score=105.91  Aligned_cols=103  Identities=20%  Similarity=0.215  Sum_probs=72.7

Q ss_pred             Cceeccchh--------HHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243            1 MQWDTAGQE--------RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         1 qi~Dt~G~~--------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      +||||||.+        .+...+..+++.+|++|||+|+++..++.+ ..+...+..   ...|+++|+||+|+....  
T Consensus        89 ~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~--  162 (472)
T PRK03003         89 TVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE--  162 (472)
T ss_pred             EEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc--
Confidence            479999975        355556778899999999999998655432 233333332   258999999999985321  


Q ss_pred             CHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           73 SYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        73 ~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                       ... ..+. ..++ ..+++||++|.|++++|++|+..+..
T Consensus       163 -~~~-~~~~-~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        163 -ADA-AALW-SLGLGEPHPVSALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             -hhh-HHHH-hcCCCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence             111 1121 3343 45799999999999999999988743

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.49  E-value=3.6e-13  Score=92.01  Aligned_cols=105  Identities=24%  Similarity=0.289  Sum_probs=73.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHH--
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK--   78 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~--   78 (144)
                      .|+||||+..|.......+..+|++|+|+|+.+..... ....+......   +.|+++++||+|+.. ... .+...  
T Consensus        73 ~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~---~~p~ivvlNK~D~~~-~~~-~~~~~~~  146 (188)
T PF00009_consen   73 TLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILREL---GIPIIVVLNKMDLIE-KEL-EEIIEEI  146 (188)
T ss_dssp             EEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHT---T-SEEEEEETCTSSH-HHH-HHHHHHH
T ss_pred             eecccccccceeecccceecccccceeeeecccccccc-ccccccccccc---ccceEEeeeeccchh-hhH-HHHHHHH
Confidence            37999999999998888899999999999998653322 22333333333   488999999999862 111 11111  


Q ss_pred             --HHHHHcC------CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           79 --AFADEIG------IPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        79 --~~~~~~~------~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                        .+.+..+      .+++++||.+|.|+.++++.|.+.+.
T Consensus       147 ~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  147 KEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             HHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence              2323332      47999999999999999999988753

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.49  E-value=3e-13  Score=108.02  Aligned_cols=100  Identities=23%  Similarity=0.312  Sum_probs=74.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCH---HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ---ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA   77 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~   77 (144)
                      .||||||++.|..++..++..+|++|+|+|+++.   .+++.+    ..+.   ....|+++++||+|+....   ....
T Consensus       298 tfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I----~~~k---~~~iPiIVViNKiDl~~~~---~e~v  367 (742)
T CHL00189        298 VFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAI----NYIQ---AANVPIIVAINKIDKANAN---TERI  367 (742)
T ss_pred             EEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHH----HHHH---hcCceEEEEEECCCccccC---HHHH
Confidence            4899999999999999999999999999998873   333322    2222   2358999999999985422   2222


Q ss_pred             HHH-------HHHcC--CcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           78 KAF-------ADEIG--IPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        78 ~~~-------~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      ...       ...++  ++++++||++|.|++++++.|....
T Consensus       368 ~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        368 KQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             HHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence            211       12233  6899999999999999999988764

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.49  E-value=2e-13  Score=103.38  Aligned_cols=108  Identities=22%  Similarity=0.274  Sum_probs=74.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc--CHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETAK   78 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~   78 (144)
                      +||||||+++|...+...+..+|++++|+|+++..........+..+....  ..|+++++||+|+.+....  ..+++.
T Consensus        83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~Dl~~~~~~~~~~~~i~  160 (406)
T TIGR03680        83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKIDLVSKEKALENYEEIK  160 (406)
T ss_pred             EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEccccCCHHHHHHHHHHHH
Confidence            489999999999888888889999999999986321111222222222221  2468999999998643221  112333


Q ss_pred             HHHHHc---CCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           79 AFADEI---GIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        79 ~~~~~~---~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      .+....   +++++++||++|.|++++++.|...+
T Consensus       161 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       161 EFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             hhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            333332   46899999999999999999998765

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.49  E-value=4.9e-13  Score=104.92  Aligned_cols=103  Identities=14%  Similarity=0.150  Sum_probs=72.6

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc------
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV------   72 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~------   72 (144)
                      ||||||++.|..++..++..+|++++|+|+++   +.+++.+.    .+..   ...|+++++||+|+.+....      
T Consensus        73 ~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f  145 (590)
T TIGR00491        73 FIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPF  145 (590)
T ss_pred             EEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchH
Confidence            79999999999999999999999999999987   44544332    2222   25899999999998532100      


Q ss_pred             ------CHHH------------HHHHHH------------Hc--CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           73 ------SYET------------AKAFAD------------EI--GIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        73 ------~~~~------------~~~~~~------------~~--~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                            ....            ..++.+            .+  ..+++++||++|+|++++++++.....
T Consensus       146 ~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~  216 (590)
T TIGR00491       146 MESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ  216 (590)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence                  0000            001111            11  258999999999999999998876543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK11058 GTPase HflX; Provisional

Probab=99.49  E-value=5e-13  Score=101.55  Aligned_cols=107  Identities=21%  Similarity=0.227  Sum_probs=73.9

Q ss_pred             CceeccchhHH--hhhhh------hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243            1 MQWDTAGQERF--RTITS------SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         1 qi~Dt~G~~~~--~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      .||||+|..+.  ..++.      ..+.++|++++|+|++++.++..+..|...+......+.|+++|+||+|+..... 
T Consensus       248 ~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~-  326 (426)
T PRK11058        248 VLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE-  326 (426)
T ss_pred             EEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh-
Confidence            38999998431  12222      3367899999999999988777765444444433334689999999999854211 


Q ss_pred             CHHHHHHHHHHcCCc-EEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           73 SYETAKAFADEIGIP-FMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        73 ~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                        .... . ...+.+ ++.+||++|.|+++++++|...+..
T Consensus       327 --~~~~-~-~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        327 --PRID-R-DEENKPIRVWLSAQTGAGIPLLFQALTERLSG  363 (426)
T ss_pred             --HHHH-H-HhcCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence              1111 1 123444 4889999999999999999998853

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.48  E-value=8.9e-13  Score=99.16  Aligned_cols=111  Identities=21%  Similarity=0.279  Sum_probs=79.9

Q ss_pred             CceeccchhH-------HhhhhhhhhcCCCEEEEEEeCC---CHHHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCC
Q 032243            1 MQWDTAGQER-------FRTITSSYYRGAHGIIIVYDVT---DQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTA   68 (144)
Q Consensus         1 qi~Dt~G~~~-------~~~~~~~~~~~~d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~   68 (144)
                      .|+||||..+       .......+++++|++++|+|++   +.+++.++..|+..+..+..  ...|+++|+||+|+..
T Consensus       210 ~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~  289 (390)
T PRK12298        210 VVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD  289 (390)
T ss_pred             EEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC
Confidence            3799999743       1111223578999999999988   45567777777777766532  2589999999999864


Q ss_pred             CcccCHHHHHHHHHHcC--CcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           69 NKVVSYETAKAFADEIG--IPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        69 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      ...+ .+.+..+.+..+  .+++++||+++.|++++++.|...+..
T Consensus       290 ~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        290 EEEA-EERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEE  334 (390)
T ss_pred             hHHH-HHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence            3332 233344444444  378999999999999999999998864

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.46  E-value=2.5e-13  Score=103.48  Aligned_cols=101  Identities=20%  Similarity=0.165  Sum_probs=68.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHH--HHHhcCCCCcEEEEEeCCCCCCCcc----cCH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE--IDRYASDNVNKLLVGNKCDLTANKV----VSY   74 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~--~~~~~~~~~p~ilv~nK~Dl~~~~~----~~~   74 (144)
                      +||||||+++|.......+..+|++++|+|+++..++.. ..+...  +.... ...++++++||+|+.+...    ...
T Consensus        88 ~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~-~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~~~~~~~  165 (426)
T TIGR00483        88 TIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQ-PQTREHAFLARTL-GINQLIVAINKMDSVNYDEEEFEAIK  165 (426)
T ss_pred             EEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccC-CchHHHHHHHHHc-CCCeEEEEEEChhccCccHHHHHHHH
Confidence            489999999998777777889999999999988643311 111111  12222 2357899999999853211    112


Q ss_pred             HHHHHHHHHcC-----CcEEEeecCCCCCHHHHH
Q 032243           75 ETAKAFADEIG-----IPFMETSAKDSTNVEQAF  103 (144)
Q Consensus        75 ~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~  103 (144)
                      .++..+++..+     ++++++||++|.|+.+++
T Consensus       166 ~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       166 KEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence            34455565554     579999999999998744

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.46  E-value=5.2e-13  Score=101.23  Aligned_cols=108  Identities=24%  Similarity=0.276  Sum_probs=71.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC--HHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETA   77 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~   77 (144)
                      +||||||+++|..........+|++++|+|+++.. .... ...+..+....  ..|+++++||+|+.+.....  .++.
T Consensus        88 ~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t-~~~l~~l~~~~--i~~iiVVlNK~Dl~~~~~~~~~~~~i  164 (411)
T PRK04000         88 SFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQT-KEHLMALDIIG--IKNIVIVQNKIDLVSKERALENYEQI  164 (411)
T ss_pred             EEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhH-HHHHHHHHHcC--CCcEEEEEEeeccccchhHHHHHHHH
Confidence            48999999998876555566789999999998532 1111 11122222221  24689999999986532211  1223


Q ss_pred             HHHHHHc---CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           78 KAFADEI---GIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        78 ~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ..+....   +.+++++||++|.|++++++.|...+.
T Consensus       165 ~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        165 KEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             HHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence            3333321   468999999999999999999887653

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.46  E-value=4.6e-13  Score=107.73  Aligned_cols=99  Identities=20%  Similarity=0.291  Sum_probs=72.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCH---HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ---ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA   77 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~   77 (144)
                      .||||||++.|..++...+..+|++|||+|+++.   .+++.    +.....   ..+|+++++||+|+....   ....
T Consensus       340 tfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~----i~~a~~---~~vPiIVviNKiDl~~a~---~e~V  409 (787)
T PRK05306        340 TFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEA----INHAKA---AGVPIIVAINKIDKPGAN---PDRV  409 (787)
T ss_pred             EEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHH----HHHHHh---cCCcEEEEEECccccccC---HHHH
Confidence            4899999999999999999999999999999873   33332    122222   258999999999985321   1221


Q ss_pred             HH-------HHHHcC--CcEEEeecCCCCCHHHHHHHHHHH
Q 032243           78 KA-------FADEIG--IPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        78 ~~-------~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      ..       +.+.++  ++++++||++|.|++++|+.|...
T Consensus       410 ~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~  450 (787)
T PRK05306        410 KQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             HHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence            11       122233  689999999999999999998754

>cd00880 Era_like Era (E

Probab=99.45  E-value=5.6e-13  Score=87.19  Aligned_cols=105  Identities=20%  Similarity=0.181  Sum_probs=72.8

Q ss_pred             CceeccchhHHh-------hhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC
Q 032243            1 MQWDTAGQERFR-------TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS   73 (144)
Q Consensus         1 qi~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~   73 (144)
                      .+|||+|...+.       ..+..++..+|++++|+|.++..+..... +......   ...|+++++||.|+.......
T Consensus        48 ~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~---~~~~~ivv~nK~D~~~~~~~~  123 (163)
T cd00880          48 VLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLRE---RGKPVLLVLNKIDLLPEEEEE  123 (163)
T ss_pred             EEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh---cCCeEEEEEEccccCChhhHH
Confidence            379999976543       34455788999999999999876655443 2333322   358999999999986543221


Q ss_pred             HHH---HHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           74 YET---AKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        74 ~~~---~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      ...   ........+.+++++||.++.|++++++++...
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~  162 (163)
T cd00880         124 ELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA  162 (163)
T ss_pred             HHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence            110   111222334689999999999999999998765

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.43  E-value=1.8e-12  Score=102.41  Aligned_cols=103  Identities=16%  Similarity=0.140  Sum_probs=72.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCH---HHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcccC--H
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ---ESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVVS--Y   74 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~--~   74 (144)
                      +||||||+++|...+...+.++|++++|+|+++.   .+.+-    +..+...   ..| +++|+||+|+.+.....  .
T Consensus        54 ~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~eh----l~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~  126 (614)
T PRK10512         54 GFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREH----LAILQLT---GNPMLTVALTKADRVDEARIAEVR  126 (614)
T ss_pred             EEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHH----HHHHHHc---CCCeEEEEEECCccCCHHHHHHHH
Confidence            4899999999988877889999999999998863   23222    2222221   245 57999999986432221  1


Q ss_pred             HHHHHHHHHcC---CcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           75 ETAKAFADEIG---IPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        75 ~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      .++..+....+   .+++++||++|.|++++++.|....
T Consensus       127 ~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~  165 (614)
T PRK10512        127 RQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLP  165 (614)
T ss_pred             HHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence            23344444444   5899999999999999999988654

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.42  E-value=3.5e-13  Score=85.24  Aligned_cols=64  Identities=38%  Similarity=0.660  Sum_probs=53.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHH---HHHHHHhcCCCCcEEEEEeCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQW---LNEIDRYASDNVNKLLVGNKCD   65 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~---~~~~~~~~~~~~p~ilv~nK~D   65 (144)
                      ++||++|++.+...+..++.++|++++|||++++.+|+.+..+   +..+.... .++|+++|+||.|
T Consensus        53 ~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D  119 (119)
T PF08477_consen   53 QFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD  119 (119)
T ss_dssp             EEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred             EEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence            4899999999999888889999999999999999999987554   55554433 3599999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.41  E-value=3.5e-12  Score=87.22  Aligned_cols=107  Identities=14%  Similarity=0.160  Sum_probs=71.0

Q ss_pred             Cceeccc----------hhHHhhhhhhhhcC---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            1 MQWDTAG----------QERFRTITSSYYRG---AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         1 qi~Dt~G----------~~~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      +||||||          ++++..+...++..   .+++++++|.+++.+..+. .+...+ ..  ...|+++++||.|+.
T Consensus        73 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l-~~--~~~~~iiv~nK~Dl~  148 (196)
T PRK00454         73 RLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWL-KE--YGIPVLIVLTKADKL  148 (196)
T ss_pred             EEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHH-HH--cCCcEEEEEECcccC
Confidence            4799999          45676777777764   4688899998765333221 111122 21  257899999999986


Q ss_pred             CCcccC--HHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           68 ANKVVS--YETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        68 ~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ......  ...+.........+++++||+++.|++++++.|...+.
T Consensus       149 ~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        149 KKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence            543221  11222333333578999999999999999999988775

>cd01895 EngA2 EngA2 subfamily

Probab=99.40  E-value=6.5e-12  Score=83.68  Aligned_cols=105  Identities=22%  Similarity=0.225  Sum_probs=69.0

Q ss_pred             CceeccchhHH----------hhh-hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQERF----------RTI-TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~~~~----------~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   69 (144)
                      .+|||||..+.          ..+ ...++.++|++++|+|.+++.+.... .++.....   ...|+++++||+|+.+.
T Consensus        53 ~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~  128 (174)
T cd01895          53 TLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEK  128 (174)
T ss_pred             EEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCc
Confidence            37999996322          211 13356789999999999887665443 22222222   24899999999998654


Q ss_pred             cccCHHHH-HHHHHHc----CCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           70 KVVSYETA-KAFADEI----GIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        70 ~~~~~~~~-~~~~~~~----~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      ........ ..+.+..    ..+++++||+++.|++++++.+...
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         129 DSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             cHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence            31212222 2222333    2589999999999999999988764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK00089 era GTPase Era; Reviewed

Probab=99.40  E-value=3.9e-12  Score=92.44  Aligned_cols=106  Identities=18%  Similarity=0.199  Sum_probs=70.8

Q ss_pred             ceeccchhH--------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC
Q 032243            2 QWDTAGQER--------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS   73 (144)
Q Consensus         2 i~Dt~G~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~   73 (144)
                      ||||||...        +.......+.++|++++|+|+++..+- .....+..+..   ...|+++|+||+|+.......
T Consensus        57 ~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~-~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l  132 (292)
T PRK00089         57 FVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGP-GDEFILEKLKK---VKTPVILVLNKIDLVKDKEEL  132 (292)
T ss_pred             EEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCh-hHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHH
Confidence            799999632        233445567899999999999873111 11222222221   247999999999996332221


Q ss_pred             HHHHHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           74 YETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        74 ~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ......+.+..+ .+++++||+++.|++++++++.+.+.
T Consensus       133 ~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~  171 (292)
T PRK00089        133 LPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLP  171 (292)
T ss_pred             HHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence            233344444344 58999999999999999999988764

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.39  E-value=2.5e-12  Score=101.27  Aligned_cols=107  Identities=15%  Similarity=0.221  Sum_probs=78.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc-CHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV-SYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-~~~~~~~   79 (144)
                      +||||||+.+|...+..++..+|++++|+|+.+. .......|+......   ..|+++++||+|+...+.. ...+...
T Consensus        67 nlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~  142 (594)
T TIGR01394        67 NIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFD  142 (594)
T ss_pred             EEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHH
Confidence            4899999999999999999999999999999763 233445555555443   4889999999998543211 1223333


Q ss_pred             HHH-------HcCCcEEEeecCCCC----------CHHHHHHHHHHHHH
Q 032243           80 FAD-------EIGIPFMETSAKDST----------NVEQAFMAMAASIK  111 (144)
Q Consensus        80 ~~~-------~~~~~~~~~Sa~~~~----------~i~~l~~~i~~~~~  111 (144)
                      +..       ...++++++||++|.          |+..+|+.|.+.+.
T Consensus       143 l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP  191 (594)
T TIGR01394       143 LFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP  191 (594)
T ss_pred             HHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence            332       234689999999995          79999998888764

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.39  E-value=4e-12  Score=97.06  Aligned_cols=98  Identities=22%  Similarity=0.203  Sum_probs=69.1

Q ss_pred             CceeccchhH--------HhhhhhhhhcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 032243            1 MQWDTAGQER--------FRTITSSYYRGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTANK   70 (144)
Q Consensus         1 qi~Dt~G~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~   70 (144)
                      ++|||||+..        +......++..+|+++||+|.++..+..  .+..|+...      ..|+++++||+|+... 
T Consensus        52 ~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~------~~piilv~NK~D~~~~-  124 (435)
T PRK00093         52 ILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKS------NKPVILVVNKVDGPDE-  124 (435)
T ss_pred             EEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCcEEEEEECccCccc-
Confidence            4899999876        3344566788999999999998753322  233333321      5899999999997431 


Q ss_pred             ccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHH
Q 032243           71 VVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        71 ~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                         ......+ ...++ .++++||++|.|+.++++.+...
T Consensus       125 ---~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~~  160 (435)
T PRK00093        125 ---EADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILEE  160 (435)
T ss_pred             ---hhhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHhh
Confidence               1222222 34565 48999999999999999999873

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.39  E-value=3.1e-12  Score=102.89  Aligned_cols=110  Identities=17%  Similarity=0.137  Sum_probs=74.2

Q ss_pred             Cceeccchh----------HHhhhh-hhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQE----------RFRTIT-SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~~----------~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   69 (144)
                      .||||||..          .|..+. ..+++++|++++|+|+++..++.+.. ++..+..   ...|+++|+||+|+.+.
T Consensus       501 ~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~  576 (712)
T PRK09518        501 LFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDE  576 (712)
T ss_pred             EEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCCh
Confidence            379999953          233222 34478999999999999877776654 3333332   25899999999999643


Q ss_pred             cccCHHHHHHHH-HHc----CCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243           70 KVVSYETAKAFA-DEI----GIPFMETSAKDSTNVEQAFMAMAASIKDRMAS  116 (144)
Q Consensus        70 ~~~~~~~~~~~~-~~~----~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~  116 (144)
                      ..  .+...... ...    ..+++++||++|.|++++++.+...+......
T Consensus       577 ~~--~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~~  626 (712)
T PRK09518        577 FR--RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQR  626 (712)
T ss_pred             hH--HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence            21  11222111 121    23779999999999999999999988754433

>cd04163 Era Era subfamily

Probab=99.39  E-value=5.5e-12  Score=83.32  Aligned_cols=104  Identities=17%  Similarity=0.135  Sum_probs=69.5

Q ss_pred             ceeccchhH--------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC
Q 032243            2 QWDTAGQER--------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS   73 (144)
Q Consensus         2 i~Dt~G~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~   73 (144)
                      +|||||...        +.......+..+|++++|+|++++.... ...+...+...   ..|+++++||.|+.......
T Consensus        55 liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~  130 (168)
T cd04163          55 FVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEG-DEFILELLKKS---KTPVILVLNKIDLVKDKEDL  130 (168)
T ss_pred             EEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCch-HHHHHHHHHHh---CCCEEEEEEchhccccHHHH
Confidence            899999643        3334456688899999999998862111 12222333222   47999999999986322221


Q ss_pred             HHHHHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHH
Q 032243           74 YETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        74 ~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      ......+....+ .+++++|++++.|++++++.|.+.
T Consensus       131 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         131 LPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY  167 (168)
T ss_pred             HHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence            233333333343 589999999999999999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.36  E-value=9e-12  Score=94.93  Aligned_cols=102  Identities=19%  Similarity=0.178  Sum_probs=72.8

Q ss_pred             Cceeccch--------hHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243            1 MQWDTAGQ--------ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         1 qi~Dt~G~--------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      ++|||||.        ..+......+++.+|+++||+|..+..+..+ ..+...++..   ..|+++|+||+|+......
T Consensus        50 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d-~~i~~~l~~~---~~piilVvNK~D~~~~~~~  125 (429)
T TIGR03594        50 ILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPED-EEIAKWLRKS---GKPVILVANKIDGKKEDAV  125 (429)
T ss_pred             EEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHH-HHHHHHHHHh---CCCEEEEEECccCCccccc
Confidence            48999995        5566667778899999999999987433322 1122222222   5899999999998643321


Q ss_pred             CHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           73 SYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        73 ~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                          .. ....+++ +++++||..|.|+.++++.+...+.
T Consensus       126 ----~~-~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~  160 (429)
T TIGR03594       126 ----AA-EFYSLGFGEPIPISAEHGRGIGDLLDAILELLP  160 (429)
T ss_pred             ----HH-HHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcC
Confidence                11 2335566 7999999999999999999987763

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.36  E-value=1.2e-12  Score=86.65  Aligned_cols=99  Identities=20%  Similarity=0.258  Sum_probs=65.5

Q ss_pred             Cceeccchh------HHhhhhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243            1 MQWDTAGQE------RFRTITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         1 qi~Dt~G~~------~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      +|+|+||.-      ........++  ++.|++++|+|+++.+   .-..+...+...   ..|+++++||+|+..++.+
T Consensus        50 ~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~---r~l~l~~ql~e~---g~P~vvvlN~~D~a~~~g~  123 (156)
T PF02421_consen   50 ELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLE---RNLYLTLQLLEL---GIPVVVVLNKMDEAERKGI  123 (156)
T ss_dssp             EEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHH---HHHHHHHHHHHT---TSSEEEEEETHHHHHHTTE
T ss_pred             EEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHH---HHHHHHHHHHHc---CCCEEEEEeCHHHHHHcCC
Confidence            378999942      2234455555  6899999999998642   222233333333   5899999999998544333


Q ss_pred             CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHH
Q 032243           73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  106 (144)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i  106 (144)
                      . .+...+.+.+++|++++||+++.|++++++.|
T Consensus       124 ~-id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  124 E-IDAEKLSERLGVPVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             E-E-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred             E-ECHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence            2 23556777889999999999999999999865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.35  E-value=1.7e-11  Score=96.46  Aligned_cols=102  Identities=19%  Similarity=0.255  Sum_probs=71.7

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc----CH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV----SY   74 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----~~   74 (144)
                      ||||||++.|..++...+..+|++++|+|+++   +.++..+..    +..   ...|+++++||+|+......    ..
T Consensus        75 ~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~  147 (586)
T PRK04004         75 FIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDAPF  147 (586)
T ss_pred             EEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCchH
Confidence            79999999999999988999999999999987   555554322    222   25899999999998421100    00


Q ss_pred             --------H-----------HHHHHHHHc---------------CCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           75 --------E-----------TAKAFADEI---------------GIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        75 --------~-----------~~~~~~~~~---------------~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                              .           +........               .++++++||.+|.|+.++++.+...+
T Consensus       148 ~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        148 LESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence                    0           011111111               24789999999999999999886544

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.35  E-value=8.1e-12  Score=86.68  Aligned_cols=99  Identities=22%  Similarity=0.193  Sum_probs=64.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc----CHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV----SYET   76 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----~~~~   76 (144)
                      .||||||+++|...+...+..+|++++|+|+++...-. ....+..+....  ..++++++||+|+......    ...+
T Consensus        80 ~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~~~--~~~iIvviNK~D~~~~~~~~~~~i~~~  156 (208)
T cd04166          80 IIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYILSLLG--IRHVVVAVNKMDLVDYSEEVFEEIVAD  156 (208)
T ss_pred             EEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHHcC--CCcEEEEEEchhcccCCHHHHHHHHHH
Confidence            37999999998777777789999999999998643111 112122222211  2457789999998542211    0123


Q ss_pred             HHHHHHHcCC---cEEEeecCCCCCHHHH
Q 032243           77 AKAFADEIGI---PFMETSAKDSTNVEQA  102 (144)
Q Consensus        77 ~~~~~~~~~~---~~~~~Sa~~~~~i~~l  102 (144)
                      ...+.+..+.   +++++||++|.|+.+.
T Consensus       157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         157 YLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            3444555553   5899999999999753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.34  E-value=7e-12  Score=95.73  Aligned_cols=109  Identities=22%  Similarity=0.231  Sum_probs=71.5

Q ss_pred             CceeccchhH----------Hhhh-hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQER----------FRTI-TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~~~----------~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   69 (144)
                      .+|||||..+          |..+ ...++.++|++++|+|+++..+..+. .++..+..   ...|+++++||+|+.+.
T Consensus       224 ~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~---~~~~~ivv~NK~Dl~~~  299 (435)
T PRK00093        224 TLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDL-RIAGLALE---AGRALVIVVNKWDLVDE  299 (435)
T ss_pred             EEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCcEEEEEECccCCCH
Confidence            3799999532          2211 23467899999999999987655543 22333322   24899999999998633


Q ss_pred             cccCHHHHHHHHHHc----CCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           70 KVVSYETAKAFADEI----GIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        70 ~~~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      ... ......+...+    ..+++++||++|.|++++++.+........
T Consensus       300 ~~~-~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~  347 (435)
T PRK00093        300 KTM-EEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENAN  347 (435)
T ss_pred             HHH-HHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence            211 11111111221    368999999999999999999888765443

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=6.3e-13  Score=88.99  Aligned_cols=108  Identities=33%  Similarity=0.583  Sum_probs=92.9

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA   81 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~   81 (144)
                      .|||+|++.+..+...|+-..-.++++||.+..-++..+..|...+..... ++|+++.|||.|..... + ......+.
T Consensus        63 ~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r~-~-k~k~v~~~  139 (216)
T KOG0096|consen   63 VWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKARK-V-KAKPVSFH  139 (216)
T ss_pred             eeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccccc-c-ccccceee
Confidence            699999999999999999999999999999999999999999999987775 58999999999985433 1 23333456


Q ss_pred             HHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           82 DEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        82 ~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      +..++.+++.||+++.|.+.-|-++++.+..
T Consensus       140 rkknl~y~~iSaksn~NfekPFl~LarKl~G  170 (216)
T KOG0096|consen  140 RKKNLQYYEISAKSNYNFERPFLWLARKLTG  170 (216)
T ss_pred             ecccceeEEeecccccccccchHHHhhhhcC
Confidence            6667899999999999999999999999864

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.34  E-value=3.4e-12  Score=97.29  Aligned_cols=102  Identities=18%  Similarity=0.157  Sum_probs=66.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHH-HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc----cCHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFN-NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV----VSYE   75 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----~~~~   75 (144)
                      .||||||+++|.......+..+|++++|+|++++..+. .....+.......  ..|+++++||+|+.....    ...+
T Consensus        87 ~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~~  164 (425)
T PRK12317         87 TIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG--INQLIVAINKMDAVNYDEKRYEEVKE  164 (425)
T ss_pred             EEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC--CCeEEEEEEccccccccHHHHHHHHH
Confidence            48999999988776656678999999999998731111 1112222222221  246899999999864211    1123


Q ss_pred             HHHHHHHHcC-----CcEEEeecCCCCCHHHHHH
Q 032243           76 TAKAFADEIG-----IPFMETSAKDSTNVEQAFM  104 (144)
Q Consensus        76 ~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~  104 (144)
                      ++..+++..+     ++++++||++|.|++++.+
T Consensus       165 ~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~  198 (425)
T PRK12317        165 EVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE  198 (425)
T ss_pred             HHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence            4444554444     4799999999999987543

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.33  E-value=3.6e-11  Score=99.12  Aligned_cols=104  Identities=20%  Similarity=0.299  Sum_probs=71.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH---
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY---   74 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~---   74 (144)
                      .||||||++.|..+....+..+|++++|+|+++   +.++..+.    .+...   +.|+++++||+|+.+......   
T Consensus       529 ~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~~---~iPiIVViNKiDL~~~~~~~~~~~  601 (1049)
T PRK14845        529 LFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQY---KTPFVVAANKIDLIPGWNISEDEP  601 (1049)
T ss_pred             EEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHHc---CCCEEEEEECCCCccccccccchh
Confidence            389999999999888888889999999999986   44444332    22222   479999999999853211100   


Q ss_pred             ---------HHH-HH-------H---HHH-------------c--CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           75 ---------ETA-KA-------F---ADE-------------I--GIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        75 ---------~~~-~~-------~---~~~-------------~--~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                               +.. .+       +   ...             +  ..+++++||++|+|++++++.|.....
T Consensus       602 ~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        602 FLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence                     000 00       0   011             1  248999999999999999988765543

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.33  E-value=1.3e-11  Score=99.39  Aligned_cols=102  Identities=21%  Similarity=0.149  Sum_probs=70.3

Q ss_pred             CceeccchhH--------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 032243            1 MQWDTAGQER--------FRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKV   71 (144)
Q Consensus         1 qi~Dt~G~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~   71 (144)
                      ++|||||.+.        +......+++.+|++|||+|+++.-  .... .|...+..   .+.|+++|+||+|+.... 
T Consensus       326 ~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~--~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~-  399 (712)
T PRK09518        326 KLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGL--TSTDERIVRMLRR---AGKPVVLAVNKIDDQASE-  399 (712)
T ss_pred             EEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCC--CHHHHHHHHHHHh---cCCCEEEEEECcccccch-
Confidence            4899999753        4455667789999999999997632  1222 33333432   258999999999985321 


Q ss_pred             cCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           72 VSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        72 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                         .....+. ..++ ..+++||++|.|+.+++++|...+..
T Consensus       400 ---~~~~~~~-~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        400 ---YDAAEFW-KLGLGEPYPISAMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             ---hhHHHHH-HcCCCCeEEEECCCCCCchHHHHHHHHhccc
Confidence               1112222 2333 56899999999999999999988743

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.32  E-value=1.4e-11  Score=85.23  Aligned_cols=69  Identities=22%  Similarity=0.339  Sum_probs=56.6

Q ss_pred             CceeccchhHHhhhhhhhhcCC-CEEEEEEeCCCH-HHHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGA-HGIIIVYDVTDQ-ESFNNVKQWLNEIDRY---ASDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~-~s~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~   69 (144)
                      ++|||||+.+++..+..++.++ +++|||+|+.+. .++.++..|+..+...   .....|+++++||+|+...
T Consensus        51 ~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          51 RLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             EEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            4899999999999999999998 999999999987 6777777766655332   1246999999999998643

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.31  E-value=5.3e-12  Score=88.28  Aligned_cols=98  Identities=17%  Similarity=0.194  Sum_probs=63.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc--cc
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---FN---NVKQWLNEIDRYASDNVNKLLVGNKCDLTANK--VV   72 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~~   72 (144)
                      +||||||+.+|...+...+..+|++++|+|+++...   |.   .....+......  ...|+++++||+|+....  ..
T Consensus        80 ~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~~  157 (219)
T cd01883          80 TILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSEE  157 (219)
T ss_pred             EEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccHH
Confidence            489999999888877777889999999999987410   11   111212222211  236889999999986321  10


Q ss_pred             C----HHHHHHHHHHcC-----CcEEEeecCCCCCHH
Q 032243           73 S----YETAKAFADEIG-----IPFMETSAKDSTNVE  100 (144)
Q Consensus        73 ~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~  100 (144)
                      .    .+++..+....+     ++++++||++|.|++
T Consensus       158 ~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         158 RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            0    112222333433     579999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.31  E-value=4.8e-11  Score=83.75  Aligned_cols=103  Identities=17%  Similarity=0.154  Sum_probs=66.8

Q ss_pred             ceeccchhHHhhhhhhhhc--CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC--HHHH
Q 032243            2 QWDTAGQERFRTITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETA   77 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~   77 (144)
                      |.||||+++|.......+.  .+|++++|+|++.... .....++..+...   ..|+++++||+|+.+.....  ..++
T Consensus        88 liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~~~~~~~~~l  163 (224)
T cd04165          88 FIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL---NIPVFVVVTKIDLAPANILQETLKDL  163 (224)
T ss_pred             EEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEECccccCHHHHHHHHHHH
Confidence            6899999998765544453  6899999999876432 1122333333322   48999999999986432221  1112


Q ss_pred             HHHHHH------------------------c--CCcEEEeecCCCCCHHHHHHHHHH
Q 032243           78 KAFADE------------------------I--GIPFMETSAKDSTNVEQAFMAMAA  108 (144)
Q Consensus        78 ~~~~~~------------------------~--~~~~~~~Sa~~~~~i~~l~~~i~~  108 (144)
                      ..+...                        .  ..++|.+||.+|.|++++.+.|..
T Consensus       164 ~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         164 KRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            222210                        0  138999999999999999987643

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK10218 GTP-binding protein; Provisional

Probab=99.30  E-value=2.5e-11  Score=95.72  Aligned_cols=107  Identities=15%  Similarity=0.180  Sum_probs=74.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc-CHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV-SYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-~~~~~~~   79 (144)
                      +||||||+.+|...+..++..+|++++|+|+++.... ....++......   ..|.++++||+|+...... ..+++..
T Consensus        71 nliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~~---gip~IVviNKiD~~~a~~~~vl~ei~~  146 (607)
T PRK10218         71 NIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFAY---GLKPIVVINKVDRPGARPDWVVDQVFD  146 (607)
T ss_pred             EEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHHc---CCCEEEEEECcCCCCCchhHHHHHHHH
Confidence            4899999999999999999999999999999864222 223333333332   5789999999998542211 1223333


Q ss_pred             HHHH-------cCCcEEEeecCCCC----------CHHHHHHHHHHHHH
Q 032243           80 FADE-------IGIPFMETSAKDST----------NVEQAFMAMAASIK  111 (144)
Q Consensus        80 ~~~~-------~~~~~~~~Sa~~~~----------~i~~l~~~i~~~~~  111 (144)
                      +...       ..++++.+||.+|.          |+..+++.|.+.+.
T Consensus       147 l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP  195 (607)
T PRK10218        147 LFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP  195 (607)
T ss_pred             HHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence            3221       24689999999998          57788887777663

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.30  E-value=1.5e-11  Score=83.33  Aligned_cols=96  Identities=15%  Similarity=0.210  Sum_probs=62.0

Q ss_pred             Cceeccch----------hHHhhhhhhhhcC---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            1 MQWDTAGQ----------ERFRTITSSYYRG---AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         1 qi~Dt~G~----------~~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      ++|||||.          ..|..+...|+..   +|++++|+|.++.-+..+. .++..+..   ...|+++++||+|+.
T Consensus        67 ~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~  142 (179)
T TIGR03598        67 RLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKL  142 (179)
T ss_pred             EEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccC
Confidence            47999993          4566666666653   6899999999875443333 22222322   258999999999986


Q ss_pred             CCccc--CHHHHHHHHHHcC--CcEEEeecCCCCCHH
Q 032243           68 ANKVV--SYETAKAFADEIG--IPFMETSAKDSTNVE  100 (144)
Q Consensus        68 ~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~  100 (144)
                      .....  ..+++.......+  ++++++||++|+|++
T Consensus       143 ~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       143 KKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             CHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence            43221  1223333343333  489999999999973

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.28  E-value=4.1e-11  Score=77.90  Aligned_cols=99  Identities=22%  Similarity=0.224  Sum_probs=72.2

Q ss_pred             Cceeccch----hHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHH
Q 032243            1 MQWDTAGQ----ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYET   76 (144)
Q Consensus         1 qi~Dt~G~----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~   76 (144)
                      +++||||-    .+|....-....++|.+++|.|.+++.+.-.     ..+....  ..|+|-|+||+|+.. .....+.
T Consensus        39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p-----P~fa~~f--~~pvIGVITK~Dl~~-~~~~i~~  110 (143)
T PF10662_consen   39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFP-----PGFASMF--NKPVIGVITKIDLPS-DDANIER  110 (143)
T ss_pred             cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC-----chhhccc--CCCEEEEEECccCcc-chhhHHH
Confidence            36899994    4566555566679999999999998642211     1111112  479999999999963 2334566


Q ss_pred             HHHHHHHcCC-cEEEeecCCCCCHHHHHHHHH
Q 032243           77 AKAFADEIGI-PFMETSAKDSTNVEQAFMAMA  107 (144)
Q Consensus        77 ~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~  107 (144)
                      +.++.+..|+ .+|++|+.+|+|+++|.+.|.
T Consensus       111 a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen  111 AKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             HHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence            7778888886 789999999999999999874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01859 MJ1464 MJ1464

Probab=99.27  E-value=4.4e-11  Score=79.30  Aligned_cols=95  Identities=21%  Similarity=0.244  Sum_probs=65.8

Q ss_pred             HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEE
Q 032243           11 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFME   90 (144)
Q Consensus        11 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~   90 (144)
                      |++++++.++++|++++|+|++++....+ ..+...+. .  ...|+++++||+|+.+....  .....+....+.+++.
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~-~--~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~   75 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL-E--LGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVY   75 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH-h--CCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEE
Confidence            56788898999999999999987543222 12222221 1  24799999999998532211  1111233345678999


Q ss_pred             eecCCCCCHHHHHHHHHHHHH
Q 032243           91 TSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        91 ~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +||+++.|++++++.+...+.
T Consensus        76 iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          76 VSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEccccccHHHHHHHHHHHHh
Confidence            999999999999999988765

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd00066 G-alpha G protein alpha subunit

Probab=99.27  E-value=5.5e-11  Score=87.45  Aligned_cols=114  Identities=24%  Similarity=0.229  Sum_probs=80.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ----------ESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~   69 (144)
                      .+||+|||...+..|.++++++++++||+|+++.          ..+.+....+..+..... .+.|++|++||.|+..+
T Consensus       164 ~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~  243 (317)
T cd00066         164 RMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEE  243 (317)
T ss_pred             EEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHH
Confidence            3799999999999999999999999999999874          334444444444433221 46899999999997421


Q ss_pred             c----------------ccCHHHHHHHHHH----------cCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           70 K----------------VVSYETAKAFADE----------IGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        70 ~----------------~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      +                ....+.+..+...          ..+..+.++|.+..++..+|+.+.+.+....
T Consensus       244 ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~  314 (317)
T cd00066         244 KIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN  314 (317)
T ss_pred             hhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence            1                1223444334322          1235578899999999999999999887643

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=1.2e-10  Score=88.82  Aligned_cols=102  Identities=20%  Similarity=0.219  Sum_probs=75.4

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK   78 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~   78 (144)
                      |.||||++-|..|+..=..=+|.+++|+|++|   +.+.+.       +.+....++|+++.+||+|..+.   +.....
T Consensus        59 FiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEA-------I~hak~a~vP~iVAiNKiDk~~~---np~~v~  128 (509)
T COG0532          59 FIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEA-------INHAKAAGVPIVVAINKIDKPEA---NPDKVK  128 (509)
T ss_pred             EEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHH-------HHHHHHCCCCEEEEEecccCCCC---CHHHHH
Confidence            68999999999998888888999999999987   333332       32323336999999999998632   233333


Q ss_pred             HHHHHcC---------CcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           79 AFADEIG---------IPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        79 ~~~~~~~---------~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      .-....+         ..++++||++|+|+.+|++.+.......
T Consensus       129 ~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~  172 (509)
T COG0532         129 QELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAEVL  172 (509)
T ss_pred             HHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHHHH
Confidence            3333333         3689999999999999999887766533

>cd01855 YqeH YqeH

Probab=99.26  E-value=7.5e-11  Score=80.66  Aligned_cols=94  Identities=23%  Similarity=0.257  Sum_probs=65.3

Q ss_pred             HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHcC
Q 032243           11 FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA-----DEIG   85 (144)
Q Consensus        11 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~   85 (144)
                      |..++..+++++|++++|+|+++....     |...+.... ...|+++|+||+|+.+... .......+.     +..+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~-~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFG-GNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhc-CCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence            577889999999999999999875411     111121111 2579999999999865332 233333333     2233


Q ss_pred             C---cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           86 I---PFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        86 ~---~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      .   .++++||++|.|++++++.|...+.
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3   6899999999999999999988763

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.25  E-value=6.7e-11  Score=95.59  Aligned_cols=103  Identities=17%  Similarity=0.194  Sum_probs=76.2

Q ss_pred             CceeccchhHHhh----------hhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243            1 MQWDTAGQERFRT----------ITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~----------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~   68 (144)
                      ++|||||..++..          ..+.++  +.+|++++|+|.++.+.   ...+...+...   ..|+++++||.|+.+
T Consensus        53 ~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler---~l~l~~ql~e~---giPvIvVlNK~Dl~~  126 (772)
T PRK09554         53 TLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER---NLYLTLQLLEL---GIPCIVALNMLDIAE  126 (772)
T ss_pred             EEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchh---hHHHHHHHHHc---CCCEEEEEEchhhhh
Confidence            4899999876542          133443  47999999999987432   22333444332   589999999999865


Q ss_pred             CcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           69 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      .+.+ ..+...+.+.++.+++++||.++.|++++++.+....
T Consensus       127 ~~~i-~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        127 KQNI-RIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             ccCc-HHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence            4444 3456677888899999999999999999999888765

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.25  E-value=9.4e-11  Score=89.86  Aligned_cols=107  Identities=14%  Similarity=0.192  Sum_probs=71.3

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC--HHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETAKA   79 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~   79 (144)
                      |+||||+++|...+..-+..+|++++|+|+++...-....+.+.......  -.++++++||+|+.+.....  .+++..
T Consensus       121 ~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiDlv~~~~~~~~~~ei~~  198 (460)
T PTZ00327        121 FVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLVKEAQAQDQYEEIRN  198 (460)
T ss_pred             eeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecccccCHHHHHHHHHHHHH
Confidence            78999999998877777889999999999986311111122222222121  24689999999986432211  112222


Q ss_pred             HHHH---cCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           80 FADE---IGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        80 ~~~~---~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      +...   ...+++++||.+|.|++.|++.|...+
T Consensus       199 ~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l  232 (460)
T PTZ00327        199 FVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI  232 (460)
T ss_pred             HHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence            2222   246899999999999999999888654

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.24  E-value=1.2e-10  Score=82.45  Aligned_cols=63  Identities=17%  Similarity=0.201  Sum_probs=49.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      +||||||+.+|...+..+++.+|++++|+|.++.... ....++..+...   ..|+++++||+|+.
T Consensus        67 ~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~  129 (237)
T cd04168          67 NLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRA  129 (237)
T ss_pred             EEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECcccc
Confidence            4899999999999899999999999999999875332 234444444333   58999999999985

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK12289 GTPase RsgA; Reviewed

Probab=99.22  E-value=7.4e-11  Score=87.66  Aligned_cols=95  Identities=14%  Similarity=0.177  Sum_probs=69.6

Q ss_pred             HHhhhhhhhhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcE
Q 032243           10 RFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPF   88 (144)
Q Consensus        10 ~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~   88 (144)
                      |-+.+.+..+.++|.+++|+|+.++. .+..+..|+.....   ..+|+++|+||+||.+...  ..........+++++
T Consensus        78 R~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v  152 (352)
T PRK12289         78 RKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQP  152 (352)
T ss_pred             cccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeE
Confidence            33445667789999999999998765 44456777765533   2589999999999964322  122233345678899


Q ss_pred             EEeecCCCCCHHHHHHHHHHH
Q 032243           89 METSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        89 ~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      +.+||.++.|++++++.+...
T Consensus       153 ~~iSA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        153 LFISVETGIGLEALLEQLRNK  173 (352)
T ss_pred             EEEEcCCCCCHHHHhhhhccc
Confidence            999999999999999988654

>COG1159 Era GTPase [General function prediction only]

Probab=99.22  E-value=2e-10  Score=82.25  Aligned_cols=107  Identities=18%  Similarity=0.190  Sum_probs=71.8

Q ss_pred             ceeccchhH--------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC
Q 032243            2 QWDTAGQER--------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS   73 (144)
Q Consensus         2 i~Dt~G~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~   73 (144)
                      |.||||.-+        +.......+.++|+++||+|+++...-.+ ...+..+..   ...|+++++||+|...+....
T Consensus        58 fvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d-~~il~~lk~---~~~pvil~iNKID~~~~~~~l  133 (298)
T COG1159          58 FVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGD-EFILEQLKK---TKTPVILVVNKIDKVKPKTVL  133 (298)
T ss_pred             EEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccH-HHHHHHHhh---cCCCeEEEEEccccCCcHHHH
Confidence            689999532        34445566789999999999987422211 223333333   247999999999986654421


Q ss_pred             HHHHHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           74 YETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        74 ~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      ......+..... ..++++||+.|.|++.+.+.+...+.+
T Consensus       134 ~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe  173 (298)
T COG1159         134 LKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE  173 (298)
T ss_pred             HHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence            222222222333 389999999999999999999888753

>smart00275 G_alpha G protein alpha subunit

Probab=99.21  E-value=2.3e-10  Score=84.89  Aligned_cols=114  Identities=24%  Similarity=0.256  Sum_probs=80.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ----------ESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~   69 (144)
                      .+||+||+..+++.|.+|++++++++||+|+++.          ..+.+....+..+.... -.+.|++|++||.|+...
T Consensus       187 ~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~  266 (342)
T smart00275      187 RMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEE  266 (342)
T ss_pred             EEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHH
Confidence            3799999999999999999999999999999974          23444444444443321 246899999999998421


Q ss_pred             c---------------ccCHHHHHHHHHH-----------cCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           70 K---------------VVSYETAKAFADE-----------IGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        70 ~---------------~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      +               ......+..+...           ..+..+.++|.+-.++..+|+.+.+.+.+..
T Consensus       267 Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~  337 (342)
T smart00275      267 KIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN  337 (342)
T ss_pred             HhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence            1               0122333333221           1135678899999999999999998887654

Subunit of G proteins that contains the guanine nucleotide binding site

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.20  E-value=1.2e-10  Score=81.63  Aligned_cols=63  Identities=22%  Similarity=0.290  Sum_probs=48.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      +||||||+.+|......++..+|++++|+|+.+...... ...+.....   ...|+++++||+|+.
T Consensus        76 ~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~---~~~p~ilviNKiD~~  138 (222)
T cd01885          76 NLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK---ERVKPVLVINKIDRL  138 (222)
T ss_pred             EEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCcc
Confidence            479999999999999999999999999999987654443 222222222   247999999999974

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.20  E-value=1.2e-10  Score=89.04  Aligned_cols=104  Identities=21%  Similarity=0.246  Sum_probs=76.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHH-H
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK-A   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~-~   79 (144)
                      +++||||+-.|.--....+.-++++++|+|++.-..-..+.+++-.+.    .+.-+|.|+||+|+...+   .+... +
T Consensus       128 NLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~ad---pe~V~~q  200 (650)
T KOG0462|consen  128 NLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSAD---PERVENQ  200 (650)
T ss_pred             EeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCC---HHHHHHH
Confidence            579999999998877788889999999999986544444444333332    246789999999996433   22222 2


Q ss_pred             HHHHcC---CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           80 FADEIG---IPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        80 ~~~~~~---~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +.+.++   .+++.+||++|.|++++++.|++.+.
T Consensus       201 ~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVP  235 (650)
T KOG0462|consen  201 LFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVP  235 (650)
T ss_pred             HHHHhcCCccceEEEEeccCccHHHHHHHHHhhCC
Confidence            233333   48999999999999999999998874

>PRK13768 GTPase; Provisional

Probab=99.20  E-value=1.8e-10  Score=82.30  Aligned_cols=107  Identities=18%  Similarity=0.192  Sum_probs=69.0

Q ss_pred             ceeccchhHH---hhhhhhhhcC-----CCEEEEEEeCCCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 032243            2 QWDTAGQERF---RTITSSYYRG-----AHGIIIVYDVTDQESFNNVK--QWLNEIDRYASDNVNKLLVGNKCDLTANKV   71 (144)
Q Consensus         2 i~Dt~G~~~~---~~~~~~~~~~-----~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~   71 (144)
                      +|||||+.++   +..++.+++.     .+++++|+|+....+..++.  .|+...... ....|+++|+||+|+.+..+
T Consensus       101 ~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~~~~  179 (253)
T PRK13768        101 LVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLSEEE  179 (253)
T ss_pred             EEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcCchh
Confidence            7999998763   4444444433     89999999996543333322  222222111 12589999999999865433


Q ss_pred             cCHHHHHH----------------------------HHHHcC--CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           72 VSYETAKA----------------------------FADEIG--IPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        72 ~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      .  +....                            ..+..+  .+++++|++++.|+++++++|.+.+.
T Consensus       180 ~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        180 L--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             H--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            2  11111                            122334  48899999999999999999988763

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.20  E-value=3.3e-10  Score=80.01  Aligned_cols=50  Identities=22%  Similarity=0.156  Sum_probs=38.8

Q ss_pred             CCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           54 NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        54 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      ..|+++|+||+|+.+     ..+...++.  ...++++||+++.|++++|+.+.+.+
T Consensus       176 y~p~iiV~NK~Dl~~-----~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         176 YIPCLYVYNKIDLIS-----IEELDLLAR--QPNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             EeeEEEEEECccCCC-----HHHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence            369999999999853     333333433  34689999999999999999998865

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.20  E-value=2.3e-10  Score=75.74  Aligned_cols=103  Identities=17%  Similarity=0.278  Sum_probs=67.3

Q ss_pred             Cceeccc----------hhHHhhhhhhhhc---CCCEEEEEEeCCCHH--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 032243            1 MQWDTAG----------QERFRTITSSYYR---GAHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCD   65 (144)
Q Consensus         1 qi~Dt~G----------~~~~~~~~~~~~~---~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D   65 (144)
                      .+|||+|          ++.+...+..|+.   +.+++++++|.++..  ....+..|+...      ..|+++++||.|
T Consensus        48 ~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~------~~~vi~v~nK~D  121 (170)
T cd01876          48 RLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL------GIPFLVVLTKAD  121 (170)
T ss_pred             EEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc------CCCEEEEEEchh
Confidence            3799998          3446666666664   467899999987652  222233333332      479999999999


Q ss_pred             CCCCcccC--HHHHHHHHH--HcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           66 LTANKVVS--YETAKAFAD--EIGIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        66 l~~~~~~~--~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      +..+....  ........+  ....+++++||+++.|+.++++.|.+.
T Consensus       122 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~  169 (170)
T cd01876         122 KLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW  169 (170)
T ss_pred             cCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence            85433211  112222222  233589999999999999999998875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK09866 hypothetical protein; Provisional

Probab=99.16  E-value=6.8e-10  Score=87.15  Aligned_cols=106  Identities=17%  Similarity=0.169  Sum_probs=69.9

Q ss_pred             ceeccchhH-----HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHH
Q 032243            2 QWDTAGQER-----FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYET   76 (144)
Q Consensus         2 i~Dt~G~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~   76 (144)
                      |.||||...     ...++...+.++|+++||+|.+...+..+ ......+.... ...|+++|+||+|+.+...-..+.
T Consensus       234 FVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~dreeddkE~  311 (741)
T PRK09866        234 LLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQDRNSDDADQ  311 (741)
T ss_pred             EEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCCcccchHHH
Confidence            689999643     34455567999999999999987433332 12233333322 135999999999985432222334


Q ss_pred             HHHHHH----HcCC---cEEEeecCCCCCHHHHHHHHHHH
Q 032243           77 AKAFAD----EIGI---PFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        77 ~~~~~~----~~~~---~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      +..+..    ..++   .+|++||+.|.|++++++.|...
T Consensus       312 Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        312 VRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             HHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence            444432    1122   69999999999999999988763

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.16  E-value=7.5e-10  Score=76.17  Aligned_cols=94  Identities=17%  Similarity=0.197  Sum_probs=63.4

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCccc---CHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV---SYETA   77 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~---~~~~~   77 (144)
                      |.||||+.+|.......+..+|++++|+|+..... ......+..+...   ..| +++++||+|+......   ..+++
T Consensus        69 ~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i  144 (195)
T cd01884          69 HVDCPGHADYIKNMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEV  144 (195)
T ss_pred             EEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHH
Confidence            78999999988877777889999999999876321 1122333333332   355 7789999998543221   11234


Q ss_pred             HHHHHHcC-----CcEEEeecCCCCCH
Q 032243           78 KAFADEIG-----IPFMETSAKDSTNV   99 (144)
Q Consensus        78 ~~~~~~~~-----~~~~~~Sa~~~~~i   99 (144)
                      ..+....+     ++++++||.+|.++
T Consensus       145 ~~~l~~~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         145 RELLSKYGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             HHHHHHhcccccCCeEEEeeCccccCC
Confidence            44444443     58999999999885

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK00098 GTPase RsgA; Reviewed

Probab=99.16  E-value=1e-10  Score=85.32  Aligned_cols=85  Identities=18%  Similarity=0.265  Sum_probs=63.0

Q ss_pred             cCCCEEEEEEeCCCHHHHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCC
Q 032243           20 RGAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTN   98 (144)
Q Consensus        20 ~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~   98 (144)
                      .++|.+++|+|++++.++.. +..|+..+...   ++|+++|+||+|+..... .........+..+++++++||+++.|
T Consensus        79 aniD~vllV~d~~~p~~~~~~idr~L~~~~~~---~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g~g  154 (298)
T PRK00098         79 ANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN---GIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEGEG  154 (298)
T ss_pred             ecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC---CCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence            89999999999988754443 46676665432   589999999999853221 12233444556788999999999999


Q ss_pred             HHHHHHHHHH
Q 032243           99 VEQAFMAMAA  108 (144)
Q Consensus        99 i~~l~~~i~~  108 (144)
                      ++++++.+..
T Consensus       155 i~~L~~~l~g  164 (298)
T PRK00098        155 LDELKPLLAG  164 (298)
T ss_pred             HHHHHhhccC
Confidence            9999987653

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.16  E-value=1.5e-10  Score=84.05  Aligned_cols=85  Identities=16%  Similarity=0.215  Sum_probs=66.2

Q ss_pred             hcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCC
Q 032243           19 YRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDST   97 (144)
Q Consensus        19 ~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~   97 (144)
                      +.++|.+++|+|++++. ++..+..|+..+...   ++|+++|+||+||.+...  ...........+.+++.+||+++.
T Consensus        76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~g~  150 (287)
T cd01854          76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKTGE  150 (287)
T ss_pred             EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCCCc
Confidence            78999999999999887 778888888776543   489999999999964321  122233344567899999999999


Q ss_pred             CHHHHHHHHHH
Q 032243           98 NVEQAFMAMAA  108 (144)
Q Consensus        98 ~i~~l~~~i~~  108 (144)
                      |+++++..+..
T Consensus       151 gi~~L~~~L~~  161 (287)
T cd01854         151 GLDELREYLKG  161 (287)
T ss_pred             cHHHHHhhhcc
Confidence            99999987764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK12736 elongation factor Tu; Reviewed

Probab=99.16  E-value=5.3e-10  Score=84.53  Aligned_cols=105  Identities=18%  Similarity=0.189  Sum_probs=67.2

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcccC---HHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVVS---YETA   77 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~---~~~~   77 (144)
                      ||||||+++|......-+..+|++++|+|+++...-. ....+..+...   ..| +++++||+|+.+.....   .+++
T Consensus        79 ~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i  154 (394)
T PRK12736         79 HVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEV  154 (394)
T ss_pred             EEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHH
Confidence            7999999999876666678899999999987632111 12223333322   467 67889999986432221   1234


Q ss_pred             HHHHHHcC-----CcEEEeecCCCC--------CHHHHHHHHHHHH
Q 032243           78 KAFADEIG-----IPFMETSAKDST--------NVEQAFMAMAASI  110 (144)
Q Consensus        78 ~~~~~~~~-----~~~~~~Sa~~~~--------~i~~l~~~i~~~~  110 (144)
                      ..+....+     .+++++||.+|.        ++..+++.+...+
T Consensus       155 ~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l  200 (394)
T PRK12736        155 RELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI  200 (394)
T ss_pred             HHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence            44444444     479999999983        4556666555443

>cd04167 Snu114p Snu114p subfamily

Probab=99.15  E-value=1.6e-10  Score=80.37  Aligned_cols=63  Identities=24%  Similarity=0.284  Sum_probs=48.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      ++|||||+.+|...+..++..+|++++|+|..+..++.. ..++.....   ...|+++++||+|+.
T Consensus        74 ~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          74 NIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             EEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence            489999999998888899999999999999987654432 333333322   248999999999974

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.14  E-value=4.6e-10  Score=84.90  Aligned_cols=93  Identities=17%  Similarity=0.220  Sum_probs=60.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCcccC---HHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKL-LVGNKCDLTANKVVS---YET   76 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~---~~~   76 (144)
                      .||||||+++|.......+..+|++++|+|+++..... ....+..+...   .+|.+ +++||+|+.+.....   .++
T Consensus        78 ~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~  153 (394)
T TIGR00485        78 AHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEME  153 (394)
T ss_pred             EEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHH
Confidence            38999999999876666677899999999998632111 12222223222   36655 689999986533211   124


Q ss_pred             HHHHHHHcC-----CcEEEeecCCCC
Q 032243           77 AKAFADEIG-----IPFMETSAKDST   97 (144)
Q Consensus        77 ~~~~~~~~~-----~~~~~~Sa~~~~   97 (144)
                      +..+++..+     ++++++||.++.
T Consensus       154 i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       154 VRELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHHHHHhcCCCccCccEEECcccccc
Confidence            455555554     689999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.11  E-value=6.6e-10  Score=80.21  Aligned_cols=87  Identities=18%  Similarity=0.361  Sum_probs=68.3

Q ss_pred             hcCCCEEEEEEeCCCH---HHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-cEEEee
Q 032243           19 YRGAHGIIIVYDVTDQ---ESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETS   92 (144)
Q Consensus        19 ~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S   92 (144)
                      +++++.++||+|++.+   +.++.++.++.++..+..  ...|.++|+||+|+...   ...-+.++.+.+.- .++++|
T Consensus       272 iER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea---e~~~l~~L~~~lq~~~V~pvs  348 (366)
T KOG1489|consen  272 IERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA---EKNLLSSLAKRLQNPHVVPVS  348 (366)
T ss_pred             HHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH---HHHHHHHHHHHcCCCcEEEee
Confidence            7899999999999998   888888888888877654  47899999999998421   12223555555544 499999


Q ss_pred             cCCCCCHHHHHHHHHH
Q 032243           93 AKDSTNVEQAFMAMAA  108 (144)
Q Consensus        93 a~~~~~i~~l~~~i~~  108 (144)
                      |++++|+.++++.|..
T Consensus       349 A~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  349 AKSGEGLEELLNGLRE  364 (366)
T ss_pred             eccccchHHHHHHHhh
Confidence            9999999999987754

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.09  E-value=1.7e-09  Score=81.51  Aligned_cols=102  Identities=20%  Similarity=0.134  Sum_probs=69.2

Q ss_pred             CceeccchhH-----H----hhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 032243            1 MQWDTAGQER-----F----RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV   71 (144)
Q Consensus         1 qi~Dt~G~~~-----~----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~   71 (144)
                      ++.||||.+.     +    .......++.||++|||+|...--+-.  +..+..+....  ..|+++|+||+|-..   
T Consensus        54 ~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~--D~~ia~~Lr~~--~kpviLvvNK~D~~~---  126 (444)
T COG1160          54 ILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPA--DEEIAKILRRS--KKPVILVVNKIDNLK---  126 (444)
T ss_pred             EEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHH--HHHHHHHHHhc--CCCEEEEEEcccCch---
Confidence            3789999753     2    223455578899999999987622111  12222222222  589999999999642   


Q ss_pred             cCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           72 VSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        72 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                        .+........+|+ .++++||..|.|+.++++.+...+.
T Consensus       127 --~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~  165 (444)
T COG1160         127 --AEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP  165 (444)
T ss_pred             --hhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence              2222233345665 8899999999999999999999974

>PRK12288 GTPase RsgA; Reviewed

Probab=99.09  E-value=1e-09  Score=81.54  Aligned_cols=88  Identities=20%  Similarity=0.224  Sum_probs=66.8

Q ss_pred             hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHHcCCcEEEeecCCCC
Q 032243           19 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV-SYETAKAFADEIGIPFMETSAKDST   97 (144)
Q Consensus        19 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~   97 (144)
                      ..|+|.+++|++.+...++..+..|+.....   ..+|+++|+||+|+.+.... ............+++++.+||+++.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            3579999999999888889999999875543   24899999999999643211 1122233445677899999999999


Q ss_pred             CHHHHHHHHHHH
Q 032243           98 NVEQAFMAMAAS  109 (144)
Q Consensus        98 ~i~~l~~~i~~~  109 (144)
                      |++++++.+...
T Consensus       195 GideL~~~L~~k  206 (347)
T PRK12288        195 GLEELEAALTGR  206 (347)
T ss_pred             CHHHHHHHHhhC
Confidence            999999988653

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.08  E-value=5.9e-10  Score=85.45  Aligned_cols=97  Identities=20%  Similarity=0.251  Sum_probs=66.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHH-------HHHHHHHHHHHhcCCCC-cEEEEEeCCCCCCCcc-
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFN-------NVKQWLNEIDRYASDNV-NKLLVGNKCDLTANKV-   71 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~-p~ilv~nK~Dl~~~~~-   71 (144)
                      .|.||||+++|...+...+..+|++|+|+|+++ ..|+       ...+.+......   .+ ++++++||+|+.+... 
T Consensus        88 ~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNKmD~~~~~~~  163 (447)
T PLN00043         88 TVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFTL---GVKQMICCCNKMDATTPKYS  163 (447)
T ss_pred             EEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHHc---CCCcEEEEEEcccCCchhhh
Confidence            378999999999999999999999999999986 2232       222322222222   35 5688899999752110 


Q ss_pred             -----cCHHHHHHHHHHcC-----CcEEEeecCCCCCHHH
Q 032243           72 -----VSYETAKAFADEIG-----IPFMETSAKDSTNVEQ  101 (144)
Q Consensus        72 -----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  101 (144)
                           ...+++..+++..+     ++++++||.+|.|+.+
T Consensus       164 ~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        164 KARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence                 01334555566555     5799999999999854

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.07  E-value=8.7e-10  Score=85.11  Aligned_cols=100  Identities=19%  Similarity=0.164  Sum_probs=62.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH----H
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE----T   76 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~----~   76 (144)
                      .||||||+++|...+..-+..+|++++|+|++....-.. ...+.......  ..++++++||+|+.+.......    +
T Consensus       110 ~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt-~~~~~l~~~lg--~~~iIvvvNKiD~~~~~~~~~~~i~~~  186 (474)
T PRK05124        110 IIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT-RRHSFIATLLG--IKHLVVAVNKMDLVDYSEEVFERIRED  186 (474)
T ss_pred             EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc-hHHHHHHHHhC--CCceEEEEEeeccccchhHHHHHHHHH
Confidence            379999999997766666799999999999875321111 11111111111  2478999999998632211111    2


Q ss_pred             HHHHHHHcC----CcEEEeecCCCCCHHHHH
Q 032243           77 AKAFADEIG----IPFMETSAKDSTNVEQAF  103 (144)
Q Consensus        77 ~~~~~~~~~----~~~~~~Sa~~~~~i~~l~  103 (144)
                      ...+....+    .+++++||++|.|+.++-
T Consensus       187 l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~  217 (474)
T PRK05124        187 YLTFAEQLPGNLDIRFVPLSALEGDNVVSQS  217 (474)
T ss_pred             HHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence            222233333    579999999999998653

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=99.06  E-value=1.6e-09  Score=80.97  Aligned_cols=95  Identities=26%  Similarity=0.379  Sum_probs=68.7

Q ss_pred             hhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHH----HHHHH
Q 032243            8 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK----AFADE   83 (144)
Q Consensus         8 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~----~~~~~   83 (144)
                      .++|..+...++++++++++|+|+.+..     ..|...+..... ..|+++|+||+|+.+. ........    ++++.
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence            4678888999999999999999997653     123333333322 4799999999999653 22233333    33555


Q ss_pred             cCC---cEEEeecCCCCCHHHHHHHHHHH
Q 032243           84 IGI---PFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        84 ~~~---~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      .++   .++.+||++|.|++++++.|...
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            666   48999999999999999998764

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=3.9e-09  Score=81.10  Aligned_cols=103  Identities=20%  Similarity=0.142  Sum_probs=75.0

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA   81 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~   81 (144)
                      |.||||+.-|..|+..=..-+|.+++|+..+|--.-.    -...+.+....++|+++.+||+|.+..   +.+...+..
T Consensus       205 FLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQ----T~EaIkhAk~A~VpiVvAinKiDkp~a---~pekv~~eL  277 (683)
T KOG1145|consen  205 FLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQ----TLEAIKHAKSANVPIVVAINKIDKPGA---NPEKVKREL  277 (683)
T ss_pred             EecCCcHHHHHHHHhccCccccEEEEEEEccCCccHh----HHHHHHHHHhcCCCEEEEEeccCCCCC---CHHHHHHHH
Confidence            6899999999999999888899999999988732111    222344444447999999999997432   233332232


Q ss_pred             HHcC---------CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           82 DEIG---------IPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        82 ~~~~---------~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ...|         .+++++||++|.|++.|.+.+.....
T Consensus       278 ~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae  316 (683)
T KOG1145|consen  278 LSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAE  316 (683)
T ss_pred             HHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHH
Confidence            2332         47999999999999999998776653

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.04  E-value=1.3e-09  Score=82.45  Aligned_cols=105  Identities=24%  Similarity=0.280  Sum_probs=75.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +++||||+-.|.--....+.-|-++++|+|++.----..+.+.+..+.    .+.-++-|+||+||+....  .....+.
T Consensus        79 nlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Adp--ervk~eI  152 (603)
T COG0481          79 NLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAADP--ERVKQEI  152 (603)
T ss_pred             EEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCCH--HHHHHHH
Confidence            478999999887766666788999999999975322233334333332    2467888999999964332  3333444


Q ss_pred             HHHcCC---cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           81 ADEIGI---PFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        81 ~~~~~~---~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ..-.|+   ..+.+||++|.|++++++.|+..+.
T Consensus       153 e~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP  186 (603)
T COG0481         153 EDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIP  186 (603)
T ss_pred             HHHhCCCcchheeEecccCCCHHHHHHHHHhhCC
Confidence            445565   5799999999999999999998874

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.02  E-value=2e-09  Score=81.70  Aligned_cols=99  Identities=20%  Similarity=0.215  Sum_probs=63.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH----HH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY----ET   76 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~----~~   76 (144)
                      .||||||+++|...+...+..+|++++|+|+.....-. ....+..+....  ..++++++||+|+.+......    ++
T Consensus        83 ~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~i~~~  159 (406)
T TIGR02034        83 IVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRRHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFENIKKD  159 (406)
T ss_pred             EEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHHHHHHHHHcC--CCcEEEEEEecccccchHHHHHHHHHH
Confidence            37999999999877667788999999999987532111 111111122211  246889999999864221101    12


Q ss_pred             HHHHHHHcC---CcEEEeecCCCCCHHHH
Q 032243           77 AKAFADEIG---IPFMETSAKDSTNVEQA  102 (144)
Q Consensus        77 ~~~~~~~~~---~~~~~~Sa~~~~~i~~l  102 (144)
                      ...+.+..+   .+++++||.+|.|+.+.
T Consensus       160 ~~~~~~~~~~~~~~iipiSA~~g~ni~~~  188 (406)
T TIGR02034       160 YLAFAEQLGFRDVTFIPLSALKGDNVVSR  188 (406)
T ss_pred             HHHHHHHcCCCCccEEEeecccCCCCccc
Confidence            222334444   47999999999999863

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>COG2262 HflX GTPases [General function prediction only]

Probab=99.02  E-value=9.3e-09  Score=76.60  Aligned_cols=98  Identities=17%  Similarity=0.159  Sum_probs=69.7

Q ss_pred             HHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEE
Q 032243           10 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFM   89 (144)
Q Consensus        10 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~   89 (144)
                      -|.+..+. ...+|++++|+|++++.....+......+....-...|+++|.||+|+.....     ....+....-..+
T Consensus       261 AFksTLEE-~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v  334 (411)
T COG2262         261 AFKSTLEE-VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPV  334 (411)
T ss_pred             HHHHHHHH-hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeE
Confidence            35555555 56899999999999997666655555555554434689999999999754322     1112211111589


Q ss_pred             EeecCCCCCHHHHHHHHHHHHHHh
Q 032243           90 ETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        90 ~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      .+||++|.|++.+++.|...+...
T Consensus       335 ~iSA~~~~gl~~L~~~i~~~l~~~  358 (411)
T COG2262         335 FISAKTGEGLDLLRERIIELLSGL  358 (411)
T ss_pred             EEEeccCcCHHHHHHHHHHHhhhc
Confidence            999999999999999999988754

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.02  E-value=4.8e-09  Score=81.90  Aligned_cols=63  Identities=17%  Similarity=0.170  Sum_probs=47.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      ++|||||+.+|......++..+|++|+|+|+++... .....++.....   .++|+++++||+|+.
T Consensus        82 nliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~iPiiv~iNK~D~~  144 (526)
T PRK00741         82 NLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCRL---RDTPIFTFINKLDRD  144 (526)
T ss_pred             EEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHHh---cCCCEEEEEECCccc
Confidence            489999999999888888999999999999876421 122333333322   258999999999974

>PRK12735 elongation factor Tu; Reviewed

Probab=99.02  E-value=3e-09  Score=80.50  Aligned_cols=104  Identities=14%  Similarity=0.208  Sum_probs=67.5

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCccc---CHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKL-LVGNKCDLTANKVV---SYETA   77 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~---~~~~~   77 (144)
                      |+||||+++|.......+..+|++++|+|+.+... ......+..+...   .+|.+ +++||+|+.+....   ...++
T Consensus        79 ~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~~---gi~~iivvvNK~Dl~~~~~~~~~~~~ei  154 (396)
T PRK12735         79 HVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEV  154 (396)
T ss_pred             EEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCeEEEEEEecCCcchHHHHHHHHHHH
Confidence            79999999998777777889999999999876321 1122333333222   46755 57999998642221   11234


Q ss_pred             HHHHHHcC-----CcEEEeecCCCC----------CHHHHHHHHHHH
Q 032243           78 KAFADEIG-----IPFMETSAKDST----------NVEQAFMAMAAS  109 (144)
Q Consensus        78 ~~~~~~~~-----~~~~~~Sa~~~~----------~i~~l~~~i~~~  109 (144)
                      ..+.+..+     ++++++||.+|.          ++..+++.|...
T Consensus       155 ~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~  201 (396)
T PRK12735        155 RELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY  201 (396)
T ss_pred             HHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence            44454443     578999999984          556666665554

>PRK13351 elongation factor G; Reviewed

Probab=99.01  E-value=4.7e-09  Score=84.52  Aligned_cols=64  Identities=23%  Similarity=0.312  Sum_probs=50.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~   68 (144)
                      +||||||+.+|...+..++..+|++++|+|.++......... +..+...   .+|+++++||+|+..
T Consensus        76 ~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~-~~~~~~~---~~p~iiviNK~D~~~  139 (687)
T PRK13351         76 NLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETV-WRQADRY---GIPRLIFINKMDRVG  139 (687)
T ss_pred             EEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHHHHhc---CCCEEEEEECCCCCC
Confidence            489999999999999999999999999999987655544333 3333322   589999999999853

>cd04169 RF3 RF3 subfamily

Probab=99.01  E-value=4.6e-09  Score=75.57  Aligned_cols=64  Identities=17%  Similarity=0.178  Sum_probs=47.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~   68 (144)
                      ++|||||+.+|......++..+|++++|+|+++... .....++.....   .++|+++++||+|+..
T Consensus        74 ~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~---~~~P~iivvNK~D~~~  137 (267)
T cd04169          74 NLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL---RGIPIITFINKLDREG  137 (267)
T ss_pred             EEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence            489999999998877888999999999999976422 122233333322   2589999999999854

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=98.96  E-value=7e-09  Score=75.67  Aligned_cols=96  Identities=20%  Similarity=0.306  Sum_probs=70.9

Q ss_pred             hcCCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEE-ee
Q 032243           19 YRGAHGIIIVYDVTDQE---SFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFME-TS   92 (144)
Q Consensus        19 ~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~S   92 (144)
                      ++++.++++|+|++..+   ..+++..+...+..+.+  ...|.+||+||+|+....+........+.+..++..+. +|
T Consensus       235 IERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~IS  314 (369)
T COG0536         235 IERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLIS  314 (369)
T ss_pred             HHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeee
Confidence            78899999999988544   57777777788877754  37899999999996443332222333444455554333 99


Q ss_pred             cCCCCCHHHHHHHHHHHHHHhh
Q 032243           93 AKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        93 a~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      |.++.|++++...+...+....
T Consensus       315 a~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         315 ALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             hhcccCHHHHHHHHHHHHHHhh
Confidence            9999999999999999987765

>COG1160 Predicted GTPases [General function prediction only]

Probab=98.96  E-value=5.3e-09  Score=78.83  Aligned_cols=113  Identities=22%  Similarity=0.191  Sum_probs=74.5

Q ss_pred             ceeccchhHHhhh-----------hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 032243            2 QWDTAGQERFRTI-----------TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK   70 (144)
Q Consensus         2 i~Dt~G~~~~~~~-----------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~   70 (144)
                      +.||+|..+-...           .-..++.+|.+++|+|.+..-+-.+ ......+...   ..++++++||.|+..+.
T Consensus       230 liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD-~~ia~~i~~~---g~~~vIvvNKWDl~~~~  305 (444)
T COG1160         230 LIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQD-LRIAGLIEEA---GRGIVIVVNKWDLVEED  305 (444)
T ss_pred             EEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHH-HHHHHHHHHc---CCCeEEEEEccccCCch
Confidence            6899997542211           1233678999999999998755443 2333333332   57999999999987653


Q ss_pred             ccCHHHHHHHHHH----cC-CcEEEeecCCCCCHHHHHHHHHHHHHHhhccCC
Q 032243           71 VVSYETAKAFADE----IG-IPFMETSAKDSTNVEQAFMAMAASIKDRMASQP  118 (144)
Q Consensus        71 ~~~~~~~~~~~~~----~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~  118 (144)
                      ....++.......    .+ .+++.+||++|.++..+|+.+...........+
T Consensus       306 ~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~  358 (444)
T COG1160         306 EATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRRIS  358 (444)
T ss_pred             hhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhccccC
Confidence            3333333222222    22 489999999999999999988887665444333

>cd01858 NGP_1 NGP-1

Probab=98.95  E-value=5.1e-09  Score=69.52  Aligned_cols=89  Identities=19%  Similarity=0.225  Sum_probs=57.1

Q ss_pred             hhcCCCEEEEEEeCCCHHH--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCC
Q 032243           18 YYRGAHGIIIVYDVTDQES--FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD   95 (144)
Q Consensus        18 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~   95 (144)
                      .++++|++++|+|+.++..  ...+..++.   . .....|+++|+||+|+.++... ......+.+......+++||+.
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~-~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~   79 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK---K-EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN   79 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHHHH---h-ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence            4789999999999988632  222333222   2 2224799999999999643221 1112222222222357899999


Q ss_pred             CCCHHHHHHHHHHHHH
Q 032243           96 STNVEQAFMAMAASIK  111 (144)
Q Consensus        96 ~~~i~~l~~~i~~~~~  111 (144)
                      +.|++++++.+...+.
T Consensus        80 ~~~~~~L~~~l~~~~~   95 (157)
T cd01858          80 PFGKGSLIQLLRQFSK   95 (157)
T ss_pred             cccHHHHHHHHHHHHh
Confidence            9999999999987654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=98.94  E-value=2.3e-09  Score=82.60  Aligned_cols=120  Identities=24%  Similarity=0.268  Sum_probs=87.3

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhcC--CCCcEEEEEeCCCCCCCcccCHHH-H
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYET-A   77 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~-~   77 (144)
                      |.||+....-+...+.-++++|++.++|+.+++.+++.+.. |+-.+++...  ..+|+|+||||.|.......+.+. .
T Consensus        60 ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~  139 (625)
T KOG1707|consen   60 IVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNT  139 (625)
T ss_pred             EEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHH
Confidence            46776554444445667899999999999999999999964 8888877663  479999999999986544332222 3


Q ss_pred             HHHHHHcC-C-cEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCC
Q 032243           78 KAFADEIG-I-PFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN  121 (144)
Q Consensus        78 ~~~~~~~~-~-~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~  121 (144)
                      ..+...+. + ..++|||++..++.++|....+++.+.-.+...++
T Consensus       140 ~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKaVihPt~PLyda~  185 (625)
T KOG1707|consen  140 LPIMIAFAEIETCIECSALTLANVSELFYYAQKAVIHPTSPLYDAE  185 (625)
T ss_pred             HHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhheeeccCccccccc
Confidence            33333332 2 67999999999999999998888876555444433

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=98.93  E-value=6.5e-09  Score=78.59  Aligned_cols=103  Identities=17%  Similarity=0.126  Sum_probs=70.3

Q ss_pred             CceeccchhHHhh--------hhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243            1 MQWDTAGQERFRT--------ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         1 qi~Dt~G~~~~~~--------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      .+.||+|.++-..        -....++.+|.+++|+|.+.+.+-.+... +.    ....+.|+++|.||.|+......
T Consensus       268 ~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~-~~----~~~~~~~~i~v~NK~DL~~~~~~  342 (454)
T COG0486         268 RLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLAL-IE----LLPKKKPIIVVLNKADLVSKIEL  342 (454)
T ss_pred             EEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHH-HH----hcccCCCEEEEEechhccccccc
Confidence            3789999754222        13455789999999999998522222111 11    22336899999999999654332


Q ss_pred             CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      .     ......+.+++.+|+++|.|++.+.+.|...+...
T Consensus       343 ~-----~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         343 E-----SEKLANGDAIISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             c-----hhhccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence            1     11112345799999999999999999999988754

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=98.93  E-value=1.5e-08  Score=74.79  Aligned_cols=114  Identities=23%  Similarity=0.290  Sum_probs=81.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHH-------HHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES-------FNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~   69 (144)
                      .++|+|||...++-|.+++++++++|||+++++-+.       -+.+.+.+..+.....    .+.+++|++||.||..+
T Consensus       198 ~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeE  277 (354)
T KOG0082|consen  198 RMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFEE  277 (354)
T ss_pred             EEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHH
Confidence            378999999999999999999999999999886442       2344444444444332    36899999999999532


Q ss_pred             cc---------------cCHHHHHHHHHHc----------CCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           70 KV---------------VSYETAKAFADEI----------GIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        70 ~~---------------~~~~~~~~~~~~~----------~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      +.               -..+++..+....          .+.+..++|.+-.++..+|..+.+.+....
T Consensus       278 Ki~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n  347 (354)
T KOG0082|consen  278 KIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN  347 (354)
T ss_pred             HhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence            11               1223333332211          235667899999999999999999987654

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=98.91  E-value=5.2e-09  Score=73.64  Aligned_cols=109  Identities=18%  Similarity=0.364  Sum_probs=69.0

Q ss_pred             CceeccchhHHhh-----hhhhhhcCCCEEEEEEeCCCHHH---HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243            1 MQWDTAGQERFRT-----ITSSYYRGAHGIIIVYDVTDQES---FNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         1 qi~Dt~G~~~~~~-----~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      ++||+|||..+..     .....++++.++|||+|+.+.+-   +..+...+..+..+++ +..+.+++.|+|+..+..-
T Consensus        51 ~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp-~~~v~vfiHK~D~l~~~~r  129 (232)
T PF04670_consen   51 NIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSP-NIKVFVFIHKMDLLSEDER  129 (232)
T ss_dssp             EEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHST-T-EEEEEEE-CCCS-HHHH
T ss_pred             EEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCC-CCeEEEEEeecccCCHHHH
Confidence            5899999975433     35777899999999999984443   3334445555566664 6889999999998643211


Q ss_pred             --C----HHHHHHHHHHcC---CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           73 --S----YETAKAFADEIG---IPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        73 --~----~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                        .    .+.+...+...+   +.++.||.-+ +.+.+.|..|+..+.
T Consensus       130 ~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~Li  176 (232)
T PF04670_consen  130 EEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLI  176 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHc
Confidence              0    112233334445   6788999887 677777777776654

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK12740 elongation factor G; Reviewed

Probab=98.90  E-value=1.8e-08  Score=81.02  Aligned_cols=63  Identities=17%  Similarity=0.164  Sum_probs=48.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      +||||||+.+|...+..++..+|++++|+|.+........ ..+..+..   .+.|+++++||+|+.
T Consensus        63 ~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~---~~~p~iiv~NK~D~~  125 (668)
T PRK12740         63 NLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK---YGVPRIIFVNKMDRA  125 (668)
T ss_pred             EEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH---cCCCEEEEEECCCCC
Confidence            4899999999988888899999999999999876544432 22333322   258999999999985

>PRK00049 elongation factor Tu; Reviewed

Probab=98.89  E-value=2.4e-08  Score=75.64  Aligned_cols=92  Identities=15%  Similarity=0.220  Sum_probs=60.3

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCCCcccC---HHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKL-LVGNKCDLTANKVVS---YETA   77 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~~~~~~---~~~~   77 (144)
                      |.||||+.+|.......+..+|++++|+|+.+... ......+..+...   ..|.+ +++||+|+.+.....   ..++
T Consensus        79 ~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i  154 (396)
T PRK00049         79 HVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEV  154 (396)
T ss_pred             EEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHH
Confidence            78999999988877777899999999999876422 2222333333322   47875 589999986422210   1233


Q ss_pred             HHHHHHcC-----CcEEEeecCCCC
Q 032243           78 KAFADEIG-----IPFMETSAKDST   97 (144)
Q Consensus        78 ~~~~~~~~-----~~~~~~Sa~~~~   97 (144)
                      ..+....+     ++++++||.++.
T Consensus       155 ~~~l~~~~~~~~~~~iv~iSa~~g~  179 (396)
T PRK00049        155 RELLSKYDFPGDDTPIIRGSALKAL  179 (396)
T ss_pred             HHHHHhcCCCccCCcEEEeeccccc
Confidence            33444332     589999999875

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.88  E-value=1.3e-08  Score=81.31  Aligned_cols=98  Identities=22%  Similarity=0.222  Sum_probs=62.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH----HH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY----ET   76 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~----~~   76 (144)
                      .|+||||+++|.......+..+|++++|+|++....-. ....+..+....  ..++++++||+|+.+......    .+
T Consensus       107 ~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~~~~~--~~~iivvvNK~D~~~~~~~~~~~i~~~  183 (632)
T PRK05506        107 IVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIASLLG--IRHVVLAVNKMDLVDYDQEVFDEIVAD  183 (632)
T ss_pred             EEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHHHHhC--CCeEEEEEEecccccchhHHHHHHHHH
Confidence            37999999998876666788999999999986532111 111111122221  257889999999864211101    12


Q ss_pred             HHHHHHHcCC---cEEEeecCCCCCHHH
Q 032243           77 AKAFADEIGI---PFMETSAKDSTNVEQ  101 (144)
Q Consensus        77 ~~~~~~~~~~---~~~~~Sa~~~~~i~~  101 (144)
                      ...+.+..++   +++++||++|.|+.+
T Consensus       184 i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        184 YRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHcCCCCccEEEEecccCCCccc
Confidence            2233344453   699999999999984

>CHL00071 tufA elongation factor Tu

Probab=98.88  E-value=2.2e-08  Score=76.21  Aligned_cols=94  Identities=16%  Similarity=0.146  Sum_probs=62.5

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcccC---HHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVVS---YETA   77 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~---~~~~   77 (144)
                      |.||||+.+|.......+..+|++++|+|+..... ......+..+...   .+| +++++||+|+.+.....   .+++
T Consensus        79 ~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l  154 (409)
T CHL00071         79 HVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEV  154 (409)
T ss_pred             EEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHH
Confidence            78999999988877777889999999999875321 1222333333222   467 67889999986432211   1234


Q ss_pred             HHHHHHcC-----CcEEEeecCCCCCH
Q 032243           78 KAFADEIG-----IPFMETSAKDSTNV   99 (144)
Q Consensus        78 ~~~~~~~~-----~~~~~~Sa~~~~~i   99 (144)
                      ..+.+..+     ++++++||.+|.++
T Consensus       155 ~~~l~~~~~~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        155 RELLSKYDFPGDDIPIVSGSALLALEA  181 (409)
T ss_pred             HHHHHHhCCCCCcceEEEcchhhcccc
Confidence            44444443     58999999998743

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.87  E-value=1.7e-08  Score=77.54  Aligned_cols=98  Identities=18%  Similarity=0.188  Sum_probs=62.8

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHH---HH---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCC--C--
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SF---NNVKQWLNEIDRYASDNVN-KLLVGNKCDLTA--N--   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~--~--   69 (144)
                      .|+||||+.+|...+...+..+|++++|+|++.-.   .|   ....+.+......   .+| +++++||+|...  -  
T Consensus        88 ~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~~~~~~  164 (446)
T PTZ00141         88 TIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKTVNYSQ  164 (446)
T ss_pred             EEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEccccccchhhH
Confidence            37999999999888888889999999999987531   01   1122222222222   355 678999999531  1  


Q ss_pred             ccc--CHHHHHHHHHHcC-----CcEEEeecCCCCCHHH
Q 032243           70 KVV--SYETAKAFADEIG-----IPFMETSAKDSTNVEQ  101 (144)
Q Consensus        70 ~~~--~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  101 (144)
                      ...  ..+++..+....+     ++++++|+.+|.|+.+
T Consensus       165 ~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        165 ERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            110  1223333333333     5799999999999864

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=98.85  E-value=2.4e-08  Score=72.04  Aligned_cols=106  Identities=17%  Similarity=0.208  Sum_probs=67.7

Q ss_pred             ceeccch------hH------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243            2 QWDTAGQ------ER------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         2 i~Dt~G~------~~------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   69 (144)
                      |+||||.      .+      +....+..+.++|.+++|+|+++....-. ...+..+..+.  .+|-++|.||.|....
T Consensus       124 f~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~k~  200 (379)
T KOG1423|consen  124 FYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKLKQ  200 (379)
T ss_pred             EecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcchh
Confidence            7999994      11      12233556789999999999986322211 22344455555  5899999999998643


Q ss_pred             cc-------------cCHHHHHHHHHHc-------------CC----cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           70 KV-------------VSYETAKAFADEI-------------GI----PFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        70 ~~-------------~~~~~~~~~~~~~-------------~~----~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +.             ++.. ...+.++.             ||    .+|.+||++|.|++++-++|...+.
T Consensus       201 k~~Ll~l~~~Lt~g~l~~~-kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~  271 (379)
T KOG1423|consen  201 KRLLLNLKDLLTNGELAKL-KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP  271 (379)
T ss_pred             hhHHhhhHHhccccccchh-hhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence            22             1110 11122211             12    4899999999999999998887654

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.84  E-value=2.6e-08  Score=66.04  Aligned_cols=84  Identities=18%  Similarity=0.127  Sum_probs=54.1

Q ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHH
Q 032243           23 HGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQA  102 (144)
Q Consensus        23 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  102 (144)
                      |++++|+|+.++.+...  .++.. ......+.|+++|+||+|+.+...+ ..-...+.+..+..++.+||+++.|++++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            78999999988654432  22221 1111235899999999998543211 11111232233457899999999999999


Q ss_pred             HHHHHHHH
Q 032243          103 FMAMAASI  110 (144)
Q Consensus       103 ~~~i~~~~  110 (144)
                      ++.+...+
T Consensus        77 ~~~i~~~~   84 (155)
T cd01849          77 ESAFTKQT   84 (155)
T ss_pred             HHHHHHHh
Confidence            99887654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01899 Ygr210 Ygr210 subfamily

Probab=98.83  E-value=2.2e-08  Score=73.70  Aligned_cols=54  Identities=13%  Similarity=0.087  Sum_probs=38.5

Q ss_pred             CCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-CCcEEEeecCCCCCHHHHHH-HHHHHHH
Q 032243           54 NVNKLLVGNKCDLTANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAFM-AMAASIK  111 (144)
Q Consensus        54 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~-~i~~~~~  111 (144)
                      ..|+++++||.|+.....    ....+.... ...++++||+.+.++.++.+ .+...+.
T Consensus       214 ~KPvI~VlNK~Dl~~~~~----~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lP  269 (318)
T cd01899         214 SKPMVIAANKADIPDAEN----NISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDP  269 (318)
T ss_pred             CCcEEEEEEHHHccChHH----HHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCC
Confidence            479999999999743222    111222233 45799999999999999998 5888774

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.83  E-value=1.6e-08  Score=66.77  Aligned_cols=106  Identities=20%  Similarity=0.262  Sum_probs=79.0

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      -+|.+|+..-+..|+.|+..+|++++++|+.|...|.+.+.-+..+.... ....|+++.+||+|....  .++++....
T Consensus        68 t~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a--~se~~l~~~  145 (193)
T KOG0077|consen   68 TFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA--ASEDELRFH  145 (193)
T ss_pred             EEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc--ccHHHHHHH
Confidence            47999999999999999999999999999999999888776666554432 247999999999998543  234443222


Q ss_pred             HH---Hc-----------C---CcEEEeecCCCCCHHHHHHHHHHH
Q 032243           81 AD---EI-----------G---IPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        81 ~~---~~-----------~---~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      .-   ..           +   +.++.+|...+.|..+.|.|+...
T Consensus       146 l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  146 LGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             HHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence            11   11           1   247888999999988888877654

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=98.83  E-value=3.5e-08  Score=71.16  Aligned_cols=64  Identities=27%  Similarity=0.314  Sum_probs=47.8

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~   68 (144)
                      +||||||+.+|...+..+++.+|++++|+|..+...-. ....+..+...   +.|+++++||+|+.+
T Consensus        67 ~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~~---~~p~ivviNK~D~~~  130 (270)
T cd01886          67 NIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADRY---NVPRIAFVNKMDRTG  130 (270)
T ss_pred             EEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHHc---CCCEEEEEECCCCCC
Confidence            37999999999988999999999999999987632111 12333333322   489999999999854

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.82  E-value=2.4e-08  Score=65.16  Aligned_cols=76  Identities=16%  Similarity=0.241  Sum_probs=51.1

Q ss_pred             hhhcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecC
Q 032243           17 SYYRGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAK   94 (144)
Q Consensus        17 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~   94 (144)
                      ..++++|++++|+|+.++.+..  .+..++...   . .+.|+++++||+|+.++..  ........+..+..++++||.
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~   80 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSAL   80 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEec
Confidence            4488999999999998865433  333333322   1 3579999999999854322  223344455566789999999


Q ss_pred             CCCC
Q 032243           95 DSTN   98 (144)
Q Consensus        95 ~~~~   98 (144)
                      ++.+
T Consensus        81 ~~~~   84 (141)
T cd01857          81 KENA   84 (141)
T ss_pred             CCCc
Confidence            8753

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.82  E-value=1.8e-08  Score=68.24  Aligned_cols=70  Identities=30%  Similarity=0.410  Sum_probs=47.8

Q ss_pred             CceeccchhHHhhhhhh---hhcCCCEEEEEEeCCC-HHHHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCc
Q 032243            1 MQWDTAGQERFRTITSS---YYRGAHGIIIVYDVTD-QESFNNVKQWLNEIDRYA---SDNVNKLLVGNKCDLTANK   70 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~---~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~   70 (144)
                      +++|+||+.+.+.....   +..++.++|||+|++. ...+.++.+++..+....   ...+|++|+.||.|+....
T Consensus        52 ~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~  128 (181)
T PF09439_consen   52 RLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK  128 (181)
T ss_dssp             CEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred             EEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence            47999999987764333   4788999999999974 456667766666664332   2479999999999997543

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd01856 YlqF YlqF

Probab=98.81  E-value=3.6e-08  Score=66.39  Aligned_cols=95  Identities=19%  Similarity=0.120  Sum_probs=63.7

Q ss_pred             hHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcE
Q 032243            9 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPF   88 (144)
Q Consensus         9 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~   88 (144)
                      .+........++++|.+++|+|++++....+ ..+...+     ...|+++|+||+|+.+...  .....++.+..+..+
T Consensus         7 ~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~v   78 (171)
T cd01856           7 AKALRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKV   78 (171)
T ss_pred             HHHHHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeE
Confidence            4556666777999999999999976532211 1112211     1368999999999853321  111212333334578


Q ss_pred             EEeecCCCCCHHHHHHHHHHHHH
Q 032243           89 METSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        89 ~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +.+||+++.|++++.+.+...+.
T Consensus        79 i~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          79 LFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             EEEECCCcccHHHHHHHHHHHHH
Confidence            99999999999999999988763

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PLN03126 Elongation factor Tu; Provisional

Probab=98.80  E-value=8.1e-08  Score=74.29  Aligned_cols=93  Identities=16%  Similarity=0.140  Sum_probs=62.1

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcccC---HHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVVS---YETA   77 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~---~~~~   77 (144)
                      ||||||+++|.......+..+|++++|+|+.+-.. ....+++..+...   .+| +++++||+|+.+.....   .+++
T Consensus       148 liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i  223 (478)
T PLN03126        148 HVDCPGHADYVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEV  223 (478)
T ss_pred             EEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHH
Confidence            79999999998877777889999999999875322 1223333333322   467 67899999986532210   1234


Q ss_pred             HHHHHHc-----CCcEEEeecCCCCC
Q 032243           78 KAFADEI-----GIPFMETSAKDSTN   98 (144)
Q Consensus        78 ~~~~~~~-----~~~~~~~Sa~~~~~   98 (144)
                      ..+.+..     .++++++|+.++.+
T Consensus       224 ~~~l~~~g~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        224 RELLSSYEFPGDDIPIISGSALLALE  249 (478)
T ss_pred             HHHHHhcCCCcCcceEEEEEcccccc
Confidence            4444443     35799999998753

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.80  E-value=6e-08  Score=70.16  Aligned_cols=100  Identities=23%  Similarity=0.203  Sum_probs=65.7

Q ss_pred             cchh-HHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc
Q 032243            6 AGQE-RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI   84 (144)
Q Consensus         6 ~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~   84 (144)
                      ||+. +..+.....++.+|++++|+|+.++.+... ..+...+     ...|+++|+||+|+.+...  ........+..
T Consensus         5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~-~~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~   76 (276)
T TIGR03596         5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN-PMIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEEK   76 (276)
T ss_pred             hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC-hhHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHHc
Confidence            4553 344455667899999999999976543221 1111111     1479999999999854221  11112223334


Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           85 GIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        85 ~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      +.+++.+||+++.|++++++.+...+...
T Consensus        77 ~~~vi~iSa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        77 GIKALAINAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence            56789999999999999999998887543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=98.79  E-value=9.2e-08  Score=68.84  Aligned_cols=93  Identities=17%  Similarity=0.230  Sum_probs=59.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||||..+|...+..++..+|++++|+|.++...... ...+..+..   ...|.++++||+|+.... . ......+
T Consensus        67 ~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~~~---~~~p~iivvNK~D~~~~~-~-~~~~~~l  140 (268)
T cd04170          67 NLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGT-EKLWEFADE---AGIPRIIFINKMDRERAD-F-DKTLAAL  140 (268)
T ss_pred             EEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCccCCCC-H-HHHHHHH
Confidence            489999999998888899999999999999987543332 222222322   258999999999985431 1 2233334


Q ss_pred             HHHcCCcEEEee--cCCCCCH
Q 032243           81 ADEIGIPFMETS--AKDSTNV   99 (144)
Q Consensus        81 ~~~~~~~~~~~S--a~~~~~i   99 (144)
                      ....+.++++++  ..++.++
T Consensus       141 ~~~~~~~~~~~~ip~~~~~~~  161 (268)
T cd04170         141 QEAFGRPVVPLQLPIGEGDDF  161 (268)
T ss_pred             HHHhCCCeEEEEecccCCCce
Confidence            444555444443  3444443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.78  E-value=1.2e-07  Score=65.35  Aligned_cols=106  Identities=14%  Similarity=0.136  Sum_probs=63.9

Q ss_pred             CceeccchhHHhhhhhh-----hhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCccc--
Q 032243            1 MQWDTAGQERFRTITSS-----YYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKVV--   72 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--   72 (144)
                      .+|||+|........+.     .+.++|+++++.+. .   |...+ .++..+...   ..|+++|+||+|+..+...  
T Consensus        55 ~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~-~---~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~  127 (197)
T cd04104          55 TLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST-R---FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRS  127 (197)
T ss_pred             eEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC-C---CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhcc
Confidence            37999997533222222     25678999888542 2   33332 344444443   4789999999998432110  


Q ss_pred             -----CHH----HHHHHHH----HcC---CcEEEeecC--CCCCHHHHHHHHHHHHHHh
Q 032243           73 -----SYE----TAKAFAD----EIG---IPFMETSAK--DSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        73 -----~~~----~~~~~~~----~~~---~~~~~~Sa~--~~~~i~~l~~~i~~~~~~~  113 (144)
                           ..+    +..+.+.    ..+   -++|.+|+.  .+.|+..+.+.|...+..+
T Consensus       128 ~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~  186 (197)
T cd04104         128 KPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH  186 (197)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence                 011    1111111    212   278999998  5799999999999988753

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>COG0218 Predicted GTPase [General function prediction only]

Probab=98.77  E-value=1.4e-07  Score=64.40  Aligned_cols=105  Identities=12%  Similarity=0.190  Sum_probs=72.6

Q ss_pred             ceeccc----------hhHHhhhhhhhhcC---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243            2 QWDTAG----------QERFRTITSSYYRG---AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA   68 (144)
Q Consensus         2 i~Dt~G----------~~~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~   68 (144)
                      |.|.||          ++.+..+...|++.   ..++++++|+.....-.+. +++..+...   .+|+++++||+|..+
T Consensus        74 lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~---~i~~~vv~tK~DKi~  149 (200)
T COG0218          74 LVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL---GIPVIVVLTKADKLK  149 (200)
T ss_pred             EEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc---CCCeEEEEEccccCC
Confidence            688998          57788888888853   6889999999876433332 223333322   599999999999876


Q ss_pred             CcccCHHHHHHHHHHcC----Cc--EEEeecCCCCCHHHHHHHHHHHHH
Q 032243           69 NKVVSYETAKAFADEIG----IP--FMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        69 ~~~~~~~~~~~~~~~~~----~~--~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ..+. ........+.+.    +.  ++.+|+.++.|++++.+.|...+.
T Consensus       150 ~~~~-~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         150 KSER-NKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             hhHH-HHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence            4332 222233333332    23  788999999999999999988775

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.76  E-value=6.3e-08  Score=68.59  Aligned_cols=107  Identities=21%  Similarity=0.253  Sum_probs=55.9

Q ss_pred             ceeccchhHHhhhhhhhh--------cCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 032243            2 QWDTAGQERFRTITSSYY--------RGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK   70 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~   70 (144)
                      |+|||||.++-..|...-        ...-++++++|...   +..|-.  .++..+........|.+.|+||+|+....
T Consensus        95 l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s--~~L~s~s~~~~~~lP~vnvlsK~Dl~~~~  172 (238)
T PF03029_consen   95 LFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVS--SLLLSLSIMLRLELPHVNVLSKIDLLSKY  172 (238)
T ss_dssp             EEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHH--HHHHHHHHHHHHTSEEEEEE--GGGS-HH
T ss_pred             EEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHH--HHHHHHHHHhhCCCCEEEeeeccCcccch
Confidence            689999988766554443        45678999999753   333432  22222221111258999999999996521


Q ss_pred             c------------cC-------HHHHHHHHHH---cC-C-cEEEeecCCCCCHHHHHHHHHHHH
Q 032243           71 V------------VS-------YETAKAFADE---IG-I-PFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        71 ~------------~~-------~~~~~~~~~~---~~-~-~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      .            ..       ..-...+++.   .+ . .++++|+.++.|+.+++..+-+++
T Consensus       173 ~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  173 LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            0            00       0000111221   12 2 799999999999999999887765

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PLN03127 Elongation factor Tu; Provisional

Probab=98.76  E-value=7.5e-08  Score=73.96  Aligned_cols=105  Identities=18%  Similarity=0.169  Sum_probs=63.1

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcccCH---HHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVVSY---ETA   77 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~---~~~   77 (144)
                      |.||||+.+|......-+..+|++++|+|.++... ......+..+...   .+| +++++||+|+.+......   .+.
T Consensus       128 ~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i  203 (447)
T PLN03127        128 HVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMEL  203 (447)
T ss_pred             EEECCCccchHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHH
Confidence            78999999887766666778999999999875321 1122223333222   478 478899999864322111   122


Q ss_pred             HHHHHHc-----CCcEEEeecC---CCCC-------HHHHHHHHHHHH
Q 032243           78 KAFADEI-----GIPFMETSAK---DSTN-------VEQAFMAMAASI  110 (144)
Q Consensus        78 ~~~~~~~-----~~~~~~~Sa~---~~~~-------i~~l~~~i~~~~  110 (144)
                      ..+....     .++++++||.   ++.|       +..+++.+...+
T Consensus       204 ~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        204 RELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             HHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence            2333322     2578888876   4444       556666555543

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.74  E-value=2.4e-07  Score=63.68  Aligned_cols=107  Identities=22%  Similarity=0.304  Sum_probs=73.2

Q ss_pred             ceeccchhHHhhhhhhhhc---CCCEEEEEEeCCC-HHHHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCCCcccC-
Q 032243            2 QWDTAGQERFRTITSSYYR---GAHGIIIVYDVTD-QESFNNVKQWLNEIDRYA---SDNVNKLLVGNKCDLTANKVVS-   73 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~---~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~~~~~-   73 (144)
                      ++|.||+.|.+.-...++.   ++-+++||+|+.. .....++.+++..+....   ...+|+++.-||+|+...+... 
T Consensus        86 LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~  165 (238)
T KOG0090|consen   86 LVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEK  165 (238)
T ss_pred             EEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHH
Confidence            6899999999888777776   7999999999764 344566666666664443   3578999999999996543211 


Q ss_pred             -----HHHHHHHHH--------------------------------HcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           74 -----YETAKAFAD--------------------------------EIGIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        74 -----~~~~~~~~~--------------------------------~~~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                           +.++..+.+                                ...+.+.+.|++++ +++++.+||.++
T Consensus       166 Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  166 IRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             HHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                 011110000                                01124778888887 899999998765

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.70  E-value=1.5e-07  Score=68.42  Aligned_cols=100  Identities=24%  Similarity=0.272  Sum_probs=65.4

Q ss_pred             cchh-HHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc
Q 032243            6 AGQE-RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI   84 (144)
Q Consensus         6 ~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~   84 (144)
                      ||+. +-.......++.+|++++|+|+.++.+...  .++.....    ..|+++|+||+|+.+...  ......+.+..
T Consensus         8 pgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~----~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~   79 (287)
T PRK09563          8 PGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG----NKPRLLILNKSDLADPEV--TKKWIEYFEEQ   79 (287)
T ss_pred             HHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC----CCCEEEEEEchhcCCHHH--HHHHHHHHHHc
Confidence            4553 333445666889999999999977543221  11111211    479999999999853211  11222223344


Q ss_pred             CCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           85 GIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        85 ~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      +.+++.+||+++.|++++++.+...+...
T Consensus        80 ~~~vi~vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         80 GIKALAINAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            56789999999999999999998887643

>COG1084 Predicted GTPase [General function prediction only]

Probab=98.70  E-value=2.1e-07  Score=67.73  Aligned_cols=108  Identities=19%  Similarity=0.163  Sum_probs=71.9

Q ss_pred             Cceeccchh-----HHhhh---hhhhh-cCCCEEEEEEeCCCHH--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQE-----RFRTI---TSSYY-RGAHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~~-----~~~~~---~~~~~-~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   69 (144)
                      |++||||.-     +.+..   .-..+ +=.++++|+||.+...  +.+.-..++..+....  ..|+++|+||+|+.+.
T Consensus       218 QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~  295 (346)
T COG1084         218 QVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADE  295 (346)
T ss_pred             EEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccch
Confidence            789999962     12211   11222 2378999999998765  4444445666776665  3799999999998644


Q ss_pred             cccCHHHHHHHHHH-cCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           70 KVVSYETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        70 ~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      ...  +++...... .+...+.+++..+.+++.+.+.+.....+
T Consensus       296 e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~a~~  337 (346)
T COG1084         296 EKL--EEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTALE  337 (346)
T ss_pred             hHH--HHHHHHHHhhccccccceeeeehhhHHHHHHHHHHHhhc
Confidence            333  233223333 34468899999999999998888877544

>PRK12739 elongation factor G; Reviewed

Probab=98.69  E-value=2.6e-07  Score=74.63  Aligned_cols=64  Identities=22%  Similarity=0.294  Sum_probs=47.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~   68 (144)
                      .||||||+.+|...+...+..+|++++|+|..+.....+ ...+..+...   ..|+++++||+|+..
T Consensus        76 ~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~~---~~p~iv~iNK~D~~~  139 (691)
T PRK12739         76 NIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADKY---GVPRIVFVNKMDRIG  139 (691)
T ss_pred             EEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHHc---CCCEEEEEECCCCCC
Confidence            379999999998888888999999999999876432222 2333333322   479999999999863

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.69  E-value=1e-07  Score=76.86  Aligned_cols=90  Identities=20%  Similarity=0.260  Sum_probs=59.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||||+.+|...+..++..+|+++||+|..+.....+ ..++..+...   ..|+++++||+|+.... . ......+
T Consensus        78 ~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~---~~p~ivviNK~D~~~~~-~-~~~~~~i  151 (689)
T TIGR00484        78 NIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQANRY---EVPRIAFVNKMDKTGAN-F-LRVVNQI  151 (689)
T ss_pred             EEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHHHHc---CCCEEEEEECCCCCCCC-H-HHHHHHH
Confidence            489999999988888899999999999999987543332 2333333322   48999999999986432 1 2223334


Q ss_pred             HHHcCC----cEEEeecCCC
Q 032243           81 ADEIGI----PFMETSAKDS   96 (144)
Q Consensus        81 ~~~~~~----~~~~~Sa~~~   96 (144)
                      ...++.    ..+++|+..+
T Consensus       152 ~~~l~~~~~~~~ipis~~~~  171 (689)
T TIGR00484       152 KQRLGANAVPIQLPIGAEDN  171 (689)
T ss_pred             HHHhCCCceeEEeccccCCC
Confidence            344442    2456666554

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=98.68  E-value=9.1e-08  Score=75.36  Aligned_cols=105  Identities=17%  Similarity=0.147  Sum_probs=74.3

Q ss_pred             CceeccchhH------Hhhhhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243            1 MQWDTAGQER------FRTITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         1 qi~Dt~G~~~------~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      ++.|+||--.      -....+.|+  ++.|+++-|+|+++-+.      -+....+..+-+.|+++++|+.|...++.+
T Consensus        53 ~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeR------nLyltlQLlE~g~p~ilaLNm~D~A~~~Gi  126 (653)
T COG0370          53 EIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLER------NLYLTLQLLELGIPMILALNMIDEAKKRGI  126 (653)
T ss_pred             EEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHH------HHHHHHHHHHcCCCeEEEeccHhhHHhcCC
Confidence            3789998522      223345665  35799999999987321      111111222225899999999998655554


Q ss_pred             CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                       .-+..++.+.+|+|++++||++|.|++++.+.+.+....
T Consensus       127 -~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~~  165 (653)
T COG0370         127 -RIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAES  165 (653)
T ss_pred             -cccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhccc
Confidence             445667888999999999999999999999998876543

>TIGR00503 prfC peptide chain release factor 3

Probab=98.67  E-value=1.2e-07  Score=74.15  Aligned_cols=64  Identities=17%  Similarity=0.154  Sum_probs=47.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~   68 (144)
                      +||||||+.+|......++..+|++|+|+|+++.. ......++.....   ...|+++++||+|+..
T Consensus        83 nliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~---~~~PiivviNKiD~~~  146 (527)
T TIGR00503        83 NLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL---RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             EEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence            48999999999887777899999999999987631 1122333333322   2589999999999853

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK01889 GTPase RsgA; Reviewed

Probab=98.65  E-value=1.8e-07  Score=70.01  Aligned_cols=83  Identities=16%  Similarity=0.234  Sum_probs=58.9

Q ss_pred             hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HcCCcEEEeecCCCC
Q 032243           19 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFAD-EIGIPFMETSAKDST   97 (144)
Q Consensus        19 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~   97 (144)
                      ..|+|.+++|++++.+-....++.++......   +++.++|+||+||.+..   ......+.. ..+.+++.+|++++.
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~  183 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGE  183 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCc
Confidence            47899999999997544445566666666554   46779999999996431   111222222 346799999999999


Q ss_pred             CHHHHHHHHH
Q 032243           98 NVEQAFMAMA  107 (144)
Q Consensus        98 ~i~~l~~~i~  107 (144)
                      |++++..++.
T Consensus       184 gl~~L~~~L~  193 (356)
T PRK01889        184 GLDVLAAWLS  193 (356)
T ss_pred             cHHHHHHHhh
Confidence            9999988774

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.65  E-value=1.8e-07  Score=59.20  Aligned_cols=99  Identities=27%  Similarity=0.250  Sum_probs=68.0

Q ss_pred             ceeccch----hHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHH
Q 032243            2 QWDTAGQ----ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA   77 (144)
Q Consensus         2 i~Dt~G~----~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~   77 (144)
                      .+||||-    .++.+..-....++|++++|...+++.+.-.     ..+....  ..|+|-+++|.||.....  ....
T Consensus        41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~-----p~f~~~~--~k~vIgvVTK~DLaed~d--I~~~  111 (148)
T COG4917          41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFP-----PGFLDIG--VKKVIGVVTKADLAEDAD--ISLV  111 (148)
T ss_pred             ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCC-----ccccccc--ccceEEEEecccccchHh--HHHH
Confidence            4689985    3343334444678999999999988743211     1111222  467999999999964333  3344


Q ss_pred             HHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHH
Q 032243           78 KAFADEIGI-PFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        78 ~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      .++..+.|. ++|.+|+.++.|++++++.+...
T Consensus       112 ~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~~  144 (148)
T COG4917         112 KRWLREAGAEPIFETSAVDNQGVEELVDYLASL  144 (148)
T ss_pred             HHHHHHcCCcceEEEeccCcccHHHHHHHHHhh
Confidence            556666665 89999999999999999987654

>PRK13796 GTPase YqeH; Provisional

Probab=98.64  E-value=4.7e-07  Score=67.97  Aligned_cols=94  Identities=24%  Similarity=0.385  Sum_probs=61.1

Q ss_pred             hHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHH----HHHHHc
Q 032243            9 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK----AFADEI   84 (144)
Q Consensus         9 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~----~~~~~~   84 (144)
                      +.|.......-...+.+++|+|+.+..     ..|...+..... +.|+++|+||+|+.+. ....+...    .+++..
T Consensus        57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         57 DDFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL  129 (365)
T ss_pred             HHHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence            345555555433344999999987743     123333333222 4789999999999653 22233332    334455


Q ss_pred             CC---cEEEeecCCCCCHHHHHHHHHHH
Q 032243           85 GI---PFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        85 ~~---~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      ++   .++.+||+++.|++++++.|.+.
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            65   68999999999999999998664

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=2.3e-07  Score=73.80  Aligned_cols=106  Identities=19%  Similarity=0.260  Sum_probs=73.1

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC------ccc
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN------KVV   72 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------~~~   72 (144)
                      ++||||++.|..++......||.+|+|+|+..   +.+.+.    ++.++..   +.|+||.+||+|-+-+      ..+
T Consensus       544 vIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiES----i~lLR~r---ktpFivALNKiDRLYgwk~~p~~~i  616 (1064)
T KOG1144|consen  544 VIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIES----INLLRMR---KTPFIVALNKIDRLYGWKSCPNAPI  616 (1064)
T ss_pred             EecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHH----HHHHHhc---CCCeEEeehhhhhhcccccCCCchH
Confidence            58999999999999999999999999999865   333333    3334443   5899999999996411      110


Q ss_pred             CH------------------HHHHHHHHH-c-----------C--CcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           73 SY------------------ETAKAFADE-I-----------G--IPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        73 ~~------------------~~~~~~~~~-~-----------~--~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      -.                  ..+.+|++. +           +  +.++++||.+|+||-+|+-+|+....-..
T Consensus       617 ~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m  690 (1064)
T KOG1144|consen  617 VEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM  690 (1064)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence            00                  001112111 0           1  24789999999999999999988775443

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.62  E-value=2.9e-07  Score=66.67  Aligned_cols=97  Identities=21%  Similarity=0.254  Sum_probs=72.5

Q ss_pred             HHhhhhhhhhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcE
Q 032243           10 RFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPF   88 (144)
Q Consensus        10 ~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~   88 (144)
                      |-+.+.+.-+.+.|-+++++++.+|+ +...++.++......   .+..++++||+||.+..+...++........++++
T Consensus        68 Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v  144 (301)
T COG1162          68 RKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPV  144 (301)
T ss_pred             ccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeE
Confidence            44555566677788888888888775 556667766666554   36678889999997655443345666777889999


Q ss_pred             EEeecCCCCCHHHHHHHHHHH
Q 032243           89 METSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        89 ~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      +.+|++++.+++++.+.+...
T Consensus       145 ~~~s~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         145 LFVSAKNGDGLEELAELLAGK  165 (301)
T ss_pred             EEecCcCcccHHHHHHHhcCC
Confidence            999999999999999877655

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.61  E-value=2.8e-07  Score=69.73  Aligned_cols=110  Identities=21%  Similarity=0.212  Sum_probs=73.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHH----------HHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCC-
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE----------SFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTA-   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~-   68 (144)
                      .++|+|||...++-|.+++++++++|||+++++.+          .+.+-..++..+... .-...|++|++||.|++. 
T Consensus       239 ~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~~  318 (389)
T PF00503_consen  239 RLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLFEE  318 (389)
T ss_dssp             EEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHHH
T ss_pred             ceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHHHH
Confidence            37999999999999999999999999999986533          223223333333222 113689999999999731 


Q ss_pred             -----C-----------c-ccCHHHHHHHHHHc------------CCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           69 -----N-----------K-VVSYETAKAFADEI------------GIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        69 -----~-----------~-~~~~~~~~~~~~~~------------~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                           +           . +-..+.+..+....            .+.++.++|.+..++..+|+.+.+.+
T Consensus       319 Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  319 KLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             HTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             HccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence                 1           1 02234444444321            12456888998889999988887653

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=98.59  E-value=2.6e-07  Score=70.20  Aligned_cols=108  Identities=15%  Similarity=0.195  Sum_probs=73.8

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC-HHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS-YETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-~~~~~~   79 (144)
                      +|.||||+..|.--.+..+...|++++++|+.+-+-.. .+-.+.....   ...+.|||+||+|....+... .++...
T Consensus        71 NIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQ-TrFVlkKAl~---~gL~PIVVvNKiDrp~Arp~~Vvd~vfD  146 (603)
T COG1217          71 NIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQ-TRFVLKKALA---LGLKPIVVINKIDRPDARPDEVVDEVFD  146 (603)
T ss_pred             EEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCc-hhhhHHHHHH---cCCCcEEEEeCCCCCCCCHHHHHHHHHH
Confidence            58999999999998999999999999999987632111 1121222222   235668899999986543311 233344


Q ss_pred             HHHH-------cCCcEEEeecCCC----------CCHHHHHHHHHHHHHH
Q 032243           80 FADE-------IGIPFMETSAKDS----------TNVEQAFMAMAASIKD  112 (144)
Q Consensus        80 ~~~~-------~~~~~~~~Sa~~~----------~~i~~l~~~i~~~~~~  112 (144)
                      +.-.       +++|++..|++.|          .++..||+.|++++..
T Consensus       147 Lf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~  196 (603)
T COG1217         147 LFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPA  196 (603)
T ss_pred             HHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCC
Confidence            4333       3469999999987          4678889888888743

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.57  E-value=3.8e-07  Score=67.11  Aligned_cols=94  Identities=21%  Similarity=0.234  Sum_probs=66.0

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH--HHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC----HH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK--QWLNEIDRYASDNVNKLLVGNKCDLTANKVVS----YE   75 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~----~~   75 (144)
                      +-||||++.|.+.+..=...||++|+++|... .-++..+  .++..+..    -..+++..||+||.+-.+--    ..
T Consensus        90 iADTPGHeQYTRNMaTGASTadlAIlLVDAR~-Gvl~QTrRHs~I~sLLG----IrhvvvAVNKmDLvdy~e~~F~~I~~  164 (431)
T COG2895          90 IADTPGHEQYTRNMATGASTADLAILLVDARK-GVLEQTRRHSFIASLLG----IRHVVVAVNKMDLVDYSEEVFEAIVA  164 (431)
T ss_pred             EecCCcHHHHhhhhhcccccccEEEEEEecch-hhHHHhHHHHHHHHHhC----CcEEEEEEeeecccccCHHHHHHHHH
Confidence            56999999999888777888999999999843 2222222  23333333    25688889999996533211    23


Q ss_pred             HHHHHHHHcCC---cEEEeecCCCCCHH
Q 032243           76 TAKAFADEIGI---PFMETSAKDSTNVE  100 (144)
Q Consensus        76 ~~~~~~~~~~~---~~~~~Sa~~~~~i~  100 (144)
                      +...+++.+++   .++++||..|+|+-
T Consensus       165 dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         165 DYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHcCCCcceEEechhccCCccc
Confidence            44566777774   78999999999886

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.55  E-value=1.3e-06  Score=65.92  Aligned_cols=106  Identities=16%  Similarity=0.156  Sum_probs=72.3

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA   81 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~   81 (144)
                      |.|+||++++-+.+-.-+...|.++||++.++--.... .+-+..+....  -...++++||+|..++..+ .+...+..
T Consensus        54 fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qt-gEhL~iLdllg--i~~giivltk~D~~d~~r~-e~~i~~Il  129 (447)
T COG3276          54 FIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQT-GEHLLILDLLG--IKNGIIVLTKADRVDEARI-EQKIKQIL  129 (447)
T ss_pred             EeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhh-HHHHHHHHhcC--CCceEEEEeccccccHHHH-HHHHHHHH
Confidence            68999999998877777889999999999965321111 11111121111  2345999999998654322 22333333


Q ss_pred             HHc---CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           82 DEI---GIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        82 ~~~---~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ...   ..+++.+|+++|+||+++.+.|.++..
T Consensus       130 ~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         130 ADLSLANAKIFKTSAKTGRGIEELKNELIDLLE  162 (447)
T ss_pred             hhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence            333   358899999999999999999999984

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.54  E-value=3.4e-07  Score=66.70  Aligned_cols=105  Identities=22%  Similarity=0.356  Sum_probs=71.3

Q ss_pred             ceeccchhHHhhhhhhhhcC---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc--CHHH
Q 032243            2 QWDTAGQERFRTITSSYYRG---AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYET   76 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~   76 (144)
                      |.|.||++-..   ...+.+   .|++++|++.+.+..--...+-+..+....  -..++++-||+|+.+....  +.++
T Consensus        90 fVDaPGHe~LM---ATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~q  164 (415)
T COG5257          90 FVDAPGHETLM---ATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQ  164 (415)
T ss_pred             EeeCCchHHHH---HHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHH
Confidence            78999998544   333444   599999999988643333333233332222  3578999999999764332  2333


Q ss_pred             HHHHHHHc---CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           77 AKAFADEI---GIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        77 ~~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +.+|.+..   +.|++++||..+.||+.+++.|.+.+.
T Consensus       165 Ik~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip  202 (415)
T COG5257         165 IKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP  202 (415)
T ss_pred             HHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence            44444422   469999999999999999999998874

>TIGR00101 ureG urease accessory protein UreG

Probab=98.46  E-value=1e-06  Score=60.90  Aligned_cols=80  Identities=21%  Similarity=0.156  Sum_probs=53.2

Q ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcE--EEEEeCCCCCCCcccCHHHHHHHHHH--cCCcEEEeecCCCC
Q 032243           22 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK--LLVGNKCDLTANKVVSYETAKAFADE--IGIPFMETSAKDST   97 (144)
Q Consensus        22 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~--ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~   97 (144)
                      +|.+|.|+|..+-.+...  ....        .+..  ++++||.|+.+.............+.  .+.+++++||++|.
T Consensus       113 ~~~~i~vvD~~~~~~~~~--~~~~--------qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~  182 (199)
T TIGR00101       113 ADLTIFVIDVAAGDKIPR--KGGP--------GITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKE  182 (199)
T ss_pred             hCcEEEEEEcchhhhhhh--hhHh--------HhhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            688999999986544221  1111        2333  89999999964212223333334443  34699999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 032243           98 NVEQAFMAMAASIK  111 (144)
Q Consensus        98 ~i~~l~~~i~~~~~  111 (144)
                      |++++|+++.+.++
T Consensus       183 gi~el~~~i~~~~~  196 (199)
T TIGR00101       183 GLDTVIDWIEHYAL  196 (199)
T ss_pred             CHHHHHHHHHhhcC
Confidence            99999999987653

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.45  E-value=8e-07  Score=66.57  Aligned_cols=101  Identities=18%  Similarity=0.190  Sum_probs=64.9

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHH---HHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH---
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY---   74 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~---   74 (144)
                      |.|+||++.|-..+-.-...+|++|||+|+.+.+   .|..- +.--..+......-...++.+||+|+.+-.+.-.   
T Consensus        89 IiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf~ei  168 (428)
T COG5256          89 IIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERFEEI  168 (428)
T ss_pred             EeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHHHHHH
Confidence            6899999999987777788999999999988753   11100 0001111222222356788899999864222111   


Q ss_pred             -HHHHHHHHHcCC-----cEEEeecCCCCCHHHH
Q 032243           75 -ETAKAFADEIGI-----PFMETSAKDSTNVEQA  102 (144)
Q Consensus        75 -~~~~~~~~~~~~-----~~~~~Sa~~~~~i~~l  102 (144)
                       .++..+.+..|+     +|+++|+..|.|+.+.
T Consensus       169 ~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         169 VSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             HHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence             233344555554     6999999999998753

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.41  E-value=5.7e-06  Score=61.31  Aligned_cols=100  Identities=12%  Similarity=0.094  Sum_probs=61.1

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc--CHHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETAKA   79 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~   79 (144)
                      |.||+|...-.   ......+|.++++.+....+   +++.....+..     ..-++|+||.|+.+....  ...+...
T Consensus       153 iieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd---~iq~~k~gi~E-----~aDIiVVNKaDl~~~~~a~~~~~el~~  221 (332)
T PRK09435        153 LVETVGVGQSE---TAVAGMVDFFLLLQLPGAGD---ELQGIKKGIME-----LADLIVINKADGDNKTAARRAAAEYRS  221 (332)
T ss_pred             EEECCCCccch---hHHHHhCCEEEEEecCCchH---HHHHHHhhhhh-----hhheEEeehhcccchhHHHHHHHHHHH
Confidence            67888865222   12466799999997644333   33222221211     234899999998643321  1122222


Q ss_pred             HHHH-------cCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           80 FADE-------IGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        80 ~~~~-------~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      ....       +..+++.+||.++.|++++++.|...+..
T Consensus       222 ~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~  261 (332)
T PRK09435        222 ALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA  261 (332)
T ss_pred             HHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            2221       11389999999999999999999998763

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=98.34  E-value=4.1e-06  Score=61.13  Aligned_cols=51  Identities=24%  Similarity=0.182  Sum_probs=40.3

Q ss_pred             CCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           54 NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        54 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      .+|.++|.||+|+..     .++...+.+..  ..+++||..+.|++++.+.|.+.+.
T Consensus       239 Y~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         239 YKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             eeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence            489999999999854     23333343333  7899999999999999999999985

>PRK09602 translation-associated GTPase; Reviewed

Probab=98.30  E-value=8.5e-06  Score=61.84  Aligned_cols=53  Identities=21%  Similarity=0.229  Sum_probs=36.2

Q ss_pred             CCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHHH-HHHHHHHHH
Q 032243           54 NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ-AFMAMAASI  110 (144)
Q Consensus        54 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~-l~~~i~~~~  110 (144)
                      ..|+++|+||.|+....    .....+.+..+..++++||..+.++.+ +++.+.+.+
T Consensus       217 ~KPvI~VlNK~D~~~~~----~~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~l  270 (396)
T PRK09602        217 SKPMVIAANKADLPPAE----ENIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYI  270 (396)
T ss_pred             CCCEEEEEEchhcccch----HHHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhC
Confidence            48999999999974321    112222222345789999999999988 666666654

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.27  E-value=8.5e-06  Score=56.51  Aligned_cols=56  Identities=23%  Similarity=0.229  Sum_probs=40.7

Q ss_pred             CcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           55 VNKLLVGNKCDLTANKVVSYETAKAFADEIG--IPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        55 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      .|.++++||.|+.+.............+..+  .+++++||+++.|++++|+++....
T Consensus       149 ~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~  206 (207)
T TIGR00073       149 EADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV  206 (207)
T ss_pred             hCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            5789999999996432222233443444433  7999999999999999999998753

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=98.26  E-value=8.4e-06  Score=62.65  Aligned_cols=110  Identities=14%  Similarity=0.115  Sum_probs=70.1

Q ss_pred             CceeccchhHH-------hhh--hhhhhcCCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQERF-------RTI--TSSYYRGAHGIIIVYDVTDQESF--NNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~~~~-------~~~--~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   69 (144)
                      |+.||||..+-       -.|  .....+=-.++++++|++....+  .+--.++..+.-.. .+.|+|+|+||+|+..+
T Consensus       218 QViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~  296 (620)
T KOG1490|consen  218 QVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRP  296 (620)
T ss_pred             eecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCc
Confidence            67899996321       111  12223345788999999876433  32223444443333 26899999999999877


Q ss_pred             cccCHHHH--HHH-HHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           70 KVVSYETA--KAF-ADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        70 ~~~~~~~~--~~~-~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ..++.+..  .+. ....+++++.+|+.+.+|+.++....-+.+.
T Consensus       297 edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~LL  341 (620)
T KOG1490|consen  297 EDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEALL  341 (620)
T ss_pred             cccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHHHH
Confidence            77765442  222 3333479999999999999987776555544

>PRK00007 elongation factor G; Reviewed

Probab=98.25  E-value=8.4e-06  Score=66.01  Aligned_cols=90  Identities=22%  Similarity=0.320  Sum_probs=57.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +|.||||+.+|.......+..+|++++|+|...-....+ ...+..+...   ..|.++++||+|+.... . .....++
T Consensus        78 ~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~~---~~p~iv~vNK~D~~~~~-~-~~~~~~i  151 (693)
T PRK00007         78 NIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADKY---KVPRIAFVNKMDRTGAD-F-YRVVEQI  151 (693)
T ss_pred             EEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHHc---CCCEEEEEECCCCCCCC-H-HHHHHHH
Confidence            378999999887767777889999999999875432222 2233333333   47899999999986432 1 2333344


Q ss_pred             HHHcCC----cEEEeecCCC
Q 032243           81 ADEIGI----PFMETSAKDS   96 (144)
Q Consensus        81 ~~~~~~----~~~~~Sa~~~   96 (144)
                      .+.++.    ..+++|+..+
T Consensus       152 ~~~l~~~~~~~~ipisa~~~  171 (693)
T PRK00007        152 KDRLGANPVPIQLPIGAEDD  171 (693)
T ss_pred             HHHhCCCeeeEEecCccCCc
Confidence            444442    3456666554

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.21  E-value=1e-05  Score=57.62  Aligned_cols=118  Identities=24%  Similarity=0.212  Sum_probs=76.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHH-------HHHHHHHHHHHH---HHh-cCCCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE-------SFNNVKQWLNEI---DRY-ASDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~---~~~-~~~~~p~ilv~nK~Dl~~~   69 (144)
                      +++|+|||...+.-|-.++++.-++|||+..++.+       +-+.+++.+..+   +.. -...+.+|+++||.|+..+
T Consensus       205 hMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDllae  284 (379)
T KOG0099|consen  205 HMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAE  284 (379)
T ss_pred             eeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHHHHH
Confidence            47999999999999999999999999999876532       233343333333   221 1135788999999998422


Q ss_pred             cccC------------------------------HHHHHHHHHHc--------C-----CcEEEeecCCCCCHHHHHHHH
Q 032243           70 KVVS------------------------------YETAKAFADEI--------G-----IPFMETSAKDSTNVEQAFMAM  106 (144)
Q Consensus        70 ~~~~------------------------------~~~~~~~~~~~--------~-----~~~~~~Sa~~~~~i~~l~~~i  106 (144)
                      +...                              ...+..+....        +     +....++|.+-++|..+|+..
T Consensus       285 Ki~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrVFnDc  364 (379)
T KOG0099|consen  285 KILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDC  364 (379)
T ss_pred             HHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHHHHHH
Confidence            1000                              00011111110        0     234678888889999999999


Q ss_pred             HHHHHHhhccCC
Q 032243          107 AASIKDRMASQP  118 (144)
Q Consensus       107 ~~~~~~~~~~~~  118 (144)
                      .+++..-...+.
T Consensus       365 rdiIqr~hlrqy  376 (379)
T KOG0099|consen  365 RDIIQRMHLRQY  376 (379)
T ss_pred             HHHHHHHHHHHh
Confidence            999876555443

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.17  E-value=2.7e-06  Score=69.08  Aligned_cols=63  Identities=24%  Similarity=0.231  Sum_probs=45.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      +||||||+.+|.......+..+|++++|+|..+.-.... ...+.....   ...|+++++||+|..
T Consensus        89 ~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~---~~~p~ivviNKiD~~  151 (720)
T TIGR00490        89 NLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK---ENVKPVLFINKVDRL  151 (720)
T ss_pred             EEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH---cCCCEEEEEEChhcc
Confidence            489999999998888888999999999999876321121 122222222   246889999999984

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.16  E-value=1.2e-05  Score=58.89  Aligned_cols=99  Identities=15%  Similarity=0.139  Sum_probs=59.7

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH--HH---
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY--ET---   76 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~---   76 (144)
                      |.||+|.-...   ...++.+|.++++.+...   .+++..+...+.     ..|.++++||+|+........  ..   
T Consensus       131 iidT~G~~~~e---~~i~~~aD~i~vv~~~~~---~~el~~~~~~l~-----~~~~ivv~NK~Dl~~~~~~~~~~~~~~~  199 (300)
T TIGR00750       131 IVETVGVGQSE---VDIANMADTFVVVTIPGT---GDDLQGIKAGLM-----EIADIYVVNKADGEGATNVTIARLMLAL  199 (300)
T ss_pred             EEeCCCCchhh---hHHHHhhceEEEEecCCc---cHHHHHHHHHHh-----hhccEEEEEcccccchhHHHHHHHHHHH
Confidence            67888753211   234667888888865432   233333333221     367899999999864322100  00   


Q ss_pred             -HHHHHHH-cC--CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           77 -AKAFADE-IG--IPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        77 -~~~~~~~-~~--~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                       ...+... .+  .+++++||+++.|+++++++|...+.
T Consensus       200 ~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       200 ALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             HHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence             0111111 12  36899999999999999999998754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd01850 CDC_Septin CDC/Septin

Probab=98.16  E-value=6.1e-06  Score=59.76  Aligned_cols=70  Identities=13%  Similarity=0.184  Sum_probs=43.1

Q ss_pred             CCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHHcCCcEEEeecCC
Q 032243           21 GAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETAKAFADEIGIPFMETSAKD   95 (144)
Q Consensus        21 ~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~   95 (144)
                      ++|+++++++.+... +... ...+..+..    .+|+++|+||+|+....+.  ......+.+...+++++......
T Consensus       114 rvh~~ly~i~~~~~~-l~~~D~~~lk~l~~----~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         114 RVHACLYFIEPTGHG-LKPLDIEFMKRLSK----RVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             ceEEEEEEEeCCCCC-CCHHHHHHHHHHhc----cCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence            478888888876422 1111 222333321    4899999999998653332  23445666777788888876543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=98.11  E-value=3.1e-05  Score=54.29  Aligned_cols=67  Identities=24%  Similarity=0.390  Sum_probs=48.8

Q ss_pred             CceeccchhHHhhh-----hhhhhcCCCEEEEEEeCCCHHHH---HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243            1 MQWDTAGQERFRTI-----TSSYYRGAHGIIIVYDVTDQESF---NNVKQWLNEIDRYASDNVNKLLVGNKCDLTA   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~~-----~~~~~~~~d~~i~v~d~~~~~s~---~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~   68 (144)
                      ++||+|||+.|.+.     ....+.+.+++++|||+...+-.   ...+.-+..+.++++ ...+++.+.|.|+..
T Consensus        56 nlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP-~AkiF~l~hKmDLv~  130 (295)
T KOG3886|consen   56 NLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSP-EAKIFCLLHKMDLVQ  130 (295)
T ss_pred             ehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCC-cceEEEEEeechhcc
Confidence            47999999876442     34567889999999999876533   334445556666654 577899999999954

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=98.10  E-value=7.3e-05  Score=51.29  Aligned_cols=109  Identities=14%  Similarity=0.186  Sum_probs=64.4

Q ss_pred             ceeccchhHH-------hh-h---hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCC
Q 032243            2 QWDTAGQERF-------RT-I---TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD--NVNKLLVGNKCDLTA   68 (144)
Q Consensus         2 i~Dt~G~~~~-------~~-~---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~   68 (144)
                      ++||||....       .. +   +.....+.|+++||+++.+. +-.+ ...+..+......  -.++++++|+.|...
T Consensus        53 viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~-t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~  130 (196)
T cd01852          53 VIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRF-TEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLE  130 (196)
T ss_pred             EEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCc-CHHH-HHHHHHHHHHhChHhHhcEEEEEECccccC
Confidence            7899995322       11 1   12234678999999998762 2121 2333333333221  257899999999765


Q ss_pred             CcccC------HHHHHHHHHHcCCcEEEee-----cCCCCCHHHHHHHHHHHHHH
Q 032243           69 NKVVS------YETAKAFADEIGIPFMETS-----AKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        69 ~~~~~------~~~~~~~~~~~~~~~~~~S-----a~~~~~i~~l~~~i~~~~~~  112 (144)
                      +..+.      ......+.+..+-.++.++     +..+.++.+|++.|.+++.+
T Consensus       131 ~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         131 GGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             CCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            43211      1334445555454454444     45678899999998888864

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>COG3596 Predicted GTPase [General function prediction only]

Probab=98.07  E-value=2.9e-05  Score=55.67  Aligned_cols=109  Identities=15%  Similarity=0.231  Sum_probs=72.0

Q ss_pred             CceeccchhH-------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc---
Q 032243            1 MQWDTAGQER-------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK---   70 (144)
Q Consensus         1 qi~Dt~G~~~-------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~---   70 (144)
                      .||||||...       ++.....++...|.++++.+..|+.---+. ..+..+..... +.++++++|..|...+.   
T Consensus        90 ~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~~-~~~~i~~VtQ~D~a~p~~~W  167 (296)
T COG3596          90 VLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDE-DFLRDVIILGL-DKRVLFVVTQADRAEPGREW  167 (296)
T ss_pred             EEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCH-HHHHHHHHhcc-CceeEEEEehhhhhcccccc
Confidence            3899998533       777888889999999999999887522221 22333333221 37899999999974331   


Q ss_pred             ----ccCHHHHHHHHH----Hc------CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           71 ----VVSYETAKAFAD----EI------GIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        71 ----~~~~~~~~~~~~----~~------~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                          ........++.+    ..      -.|++.++...+.|++.+...++.++.
T Consensus       168 ~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp  222 (296)
T COG3596         168 DSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALP  222 (296)
T ss_pred             ccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence                111111111211    11      137888899999999999999999885

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=98.07  E-value=8.9e-05  Score=53.33  Aligned_cols=109  Identities=17%  Similarity=0.227  Sum_probs=60.9

Q ss_pred             ceeccchhH---H---hhh-hhhhh-cCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 032243            2 QWDTAGQER---F---RTI-TSSYY-RGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK   70 (144)
Q Consensus         2 i~Dt~G~~~---~---~~~-~~~~~-~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~   70 (144)
                      ++|||||-+   |   ... ...+. ...-++++++|...   +.+|-  .+++..-........|++++.||.|+.+..
T Consensus       120 liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFM--SNMlYAcSilyktklp~ivvfNK~Dv~d~~  197 (366)
T KOG1532|consen  120 LIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFM--SNMLYACSILYKTKLPFIVVFNKTDVSDSE  197 (366)
T ss_pred             EEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHH--HHHHHHHHHHHhccCCeEEEEecccccccH
Confidence            689999853   1   111 22222 22456778888543   33332  222222212222358999999999985431


Q ss_pred             ccC--------HHHHHH---------HHHH---------cCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           71 VVS--------YETAKA---------FADE---------IGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        71 ~~~--------~~~~~~---------~~~~---------~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      -..        .+++..         +...         .++..+.+|+.+|.|.+++|..+-..+.+
T Consensus       198 fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE  265 (366)
T KOG1532|consen  198 FALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE  265 (366)
T ss_pred             HHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence            100        011111         0000         13578999999999999999988776643

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=98.00  E-value=3.6e-05  Score=60.08  Aligned_cols=92  Identities=20%  Similarity=0.290  Sum_probs=67.5

Q ss_pred             cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC-cEEEeecCCCCC
Q 032243           20 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTN   98 (144)
Q Consensus        20 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~   98 (144)
                      ..+|+++++||++++.+|.-+..........  ...|+++|++|+|+....+.......+++..+++ +.+.+|.++.-.
T Consensus       494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s  571 (625)
T KOG1707|consen  494 AACDVACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS  571 (625)
T ss_pred             ceeeeEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC
Confidence            4589999999999999998776655554433  4699999999999954332222222678888887 456667665334


Q ss_pred             HHHHHHHHHHHHHHhh
Q 032243           99 VEQAFMAMAASIKDRM  114 (144)
Q Consensus        99 i~~l~~~i~~~~~~~~  114 (144)
                       .++|..|+.+...+.
T Consensus       572 -~~lf~kL~~~A~~Ph  586 (625)
T KOG1707|consen  572 -NELFIKLATMAQYPH  586 (625)
T ss_pred             -chHHHHHHHhhhCCC
Confidence             899999999988655

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=97.98  E-value=3.5e-05  Score=48.39  Aligned_cols=76  Identities=25%  Similarity=0.305  Sum_probs=53.9

Q ss_pred             hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecC
Q 032243           15 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAK   94 (144)
Q Consensus        15 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~   94 (144)
                      ...+.+.++.++++++.++..+++.+  |...+......+.|.++++||.|+........+..        ..++++|++
T Consensus        40 ~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~  109 (124)
T smart00010       40 DPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAK  109 (124)
T ss_pred             cccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCC
Confidence            45567789999999999999988765  66666554445688999999999843223322222        245578888


Q ss_pred             CCCCHH
Q 032243           95 DSTNVE  100 (144)
Q Consensus        95 ~~~~i~  100 (144)
                      ++.|+.
T Consensus       110 ~~~~~~  115 (124)
T smart00010      110 TPEEGE  115 (124)
T ss_pred             Ccchhh
Confidence            988874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=97.90  E-value=0.00017  Score=54.12  Aligned_cols=103  Identities=17%  Similarity=0.157  Sum_probs=63.3

Q ss_pred             ceeccchhHHhhh-hhhhh-cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC--HHHH
Q 032243            2 QWDTAGQERFRTI-TSSYY-RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETA   77 (144)
Q Consensus         2 i~Dt~G~~~~~~~-~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~   77 (144)
                      |.||.|+++|.+. .+..+ ...|..++++.+++-.+-- .++-+.....   -..|+|++.||+|+.+.....  .+++
T Consensus       205 fVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~a---~~lPviVvvTK~D~~~ddr~~~v~~ei  280 (527)
T COG5258         205 FVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIALA---MELPVIVVVTKIDMVPDDRFQGVVEEI  280 (527)
T ss_pred             EEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhhh---hcCCEEEEEEecccCcHHHHHHHHHHH
Confidence            7899999998764 33333 5689999999887743211 1221111111   158999999999996542210  1111


Q ss_pred             HHH--------------------HH--HcC---CcEEEeecCCCCCHHHHHHHHHH
Q 032243           78 KAF--------------------AD--EIG---IPFMETSAKDSTNVEQAFMAMAA  108 (144)
Q Consensus        78 ~~~--------------------~~--~~~---~~~~~~Sa~~~~~i~~l~~~i~~  108 (144)
                      ..+                    +.  ..+   .|+|.+|+.+|+|++-+.+.+..
T Consensus       281 ~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~  336 (527)
T COG5258         281 SALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL  336 (527)
T ss_pred             HHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence            111                    11  111   38999999999999877665543

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=97.90  E-value=2.7e-05  Score=59.71  Aligned_cols=111  Identities=22%  Similarity=0.222  Sum_probs=66.9

Q ss_pred             ceeccchhH-Hhh--------hhhhhhcCCCEEEEEEeCC--CHHHHHHHHHHHHHHHHh------cCCCCcEEEEEeCC
Q 032243            2 QWDTAGQER-FRT--------ITSSYYRGAHGIIIVYDVT--DQESFNNVKQWLNEIDRY------ASDNVNKLLVGNKC   64 (144)
Q Consensus         2 i~Dt~G~~~-~~~--------~~~~~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~------~~~~~p~ilv~nK~   64 (144)
                      +.||+|..+ -+.        -.+.-++.+|+++||+|+.  +..+-..+.+.+.....-      .....+++++.||.
T Consensus       320 L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~  399 (531)
T KOG1191|consen  320 LSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKS  399 (531)
T ss_pred             EEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechh
Confidence            679999765 111        1244467899999999993  333333333444443221      11247899999999


Q ss_pred             CCCCC-cccCHHHHHHHHHHcC---Cc-EEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           65 DLTAN-KVVSYETAKAFADEIG---IP-FMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        65 Dl~~~-~~~~~~~~~~~~~~~~---~~-~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      |+... .+..... ..+....+   .+ +.++|+++++|++.+.+.+...+...
T Consensus       400 D~~s~~~~~~~~~-~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~  452 (531)
T KOG1191|consen  400 DLVSKIPEMTKIP-VVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERL  452 (531)
T ss_pred             hccCccccccCCc-eeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence            98644 1111101 11111122   34 45599999999999999998887643

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.90  E-value=0.00011  Score=54.46  Aligned_cols=105  Identities=20%  Similarity=0.198  Sum_probs=59.0

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCccc---CHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDLTANKVV---SYETA   77 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~---~~~~~   77 (144)
                      ++|+||+...-+..-.-..=.|..++|+|..--..-....- ++..+  .   ....++|+||+|..++..-   -.+..
T Consensus        74 lvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~--~---c~klvvvinkid~lpE~qr~ski~k~~  148 (522)
T KOG0461|consen   74 LVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL--L---CKKLVVVINKIDVLPENQRASKIEKSA  148 (522)
T ss_pred             EEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh--h---ccceEEEEeccccccchhhhhHHHHHH
Confidence            68999997544333222333689999999764322222222 11112  1   2456888999998654321   11222


Q ss_pred             HHH---HHHcC----CcEEEeecCCC----CCHHHHHHHHHHHHH
Q 032243           78 KAF---ADEIG----IPFMETSAKDS----TNVEQAFMAMAASIK  111 (144)
Q Consensus        78 ~~~---~~~~~----~~~~~~Sa~~~----~~i~~l~~~i~~~~~  111 (144)
                      .++   .+..+    .|++++||..|    ++|.++.+.+...+.
T Consensus       149 kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if  193 (522)
T KOG0461|consen  149 KKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIF  193 (522)
T ss_pred             HHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence            222   23332    59999999999    556666555555543

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=97.89  E-value=3.1e-05  Score=64.06  Aligned_cols=63  Identities=19%  Similarity=0.257  Sum_probs=46.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      +|+||||+.+|.......+..+|++|+|+|+.+--.... ...+.....   .+.|+++++||+|..
T Consensus       101 nliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~---~~~p~i~~iNK~D~~  163 (843)
T PLN00116        101 NLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG---ERIRPVLTVNKMDRC  163 (843)
T ss_pred             EEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH---CCCCEEEEEECCccc
Confidence            378999999998888888899999999999876422221 223333322   258999999999985

>PTZ00416 elongation factor 2; Provisional

Probab=97.87  E-value=2.8e-05  Score=64.21  Aligned_cols=62  Identities=19%  Similarity=0.269  Sum_probs=46.7

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      |.||||+.+|.......+..+|++|+|+|+.+.-... ....+..+...   +.|+++++||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~~---~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQE---RIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHHc---CCCEEEEEEChhhh
Confidence            7899999999888888899999999999987642222 22333333332   47999999999985

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=97.87  E-value=0.0001  Score=46.13  Aligned_cols=56  Identities=27%  Similarity=0.305  Sum_probs=36.1

Q ss_pred             ceeccchhH----------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 032243            2 QWDTAGQER----------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNK   63 (144)
Q Consensus         2 i~Dt~G~~~----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK   63 (144)
                      |+||||...          +....+. +..+|++++|+|.++... .....++..+.    ...|+++|+||
T Consensus        51 ~vDtpG~~~~~~~~~~~~~~~~~~~~-~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   51 LVDTPGINDGESQDNDGKEIRKFLEQ-ISKSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             EEESSSCSSSSHHHHHHHHHHHHHHH-HCTESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             EEeCCCCcccchhhHHHHHHHHHHHH-HHHCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            799999521          2223344 488999999999877321 22233334442    35899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01882 BMS1 Bms1

Probab=97.83  E-value=0.00017  Score=50.73  Aligned_cols=89  Identities=13%  Similarity=0.082  Sum_probs=50.7

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCcccCH---HHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK-LLVGNKCDLTANKVVSY---ETA   77 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~~~~~---~~~   77 (144)
                      ++||||..  ..+. ...+.+|++++|+|.+......+ ..++..+...   ..|. ++|+||.|+......-.   ..+
T Consensus        87 ~vDtPg~~--~~~l-~~ak~aDvVllviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l  159 (225)
T cd01882          87 FIECPNDI--NAMI-DIAKVADLVLLLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRL  159 (225)
T ss_pred             EEeCCchH--HHHH-HHHHhcCEEEEEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHH
Confidence            67999864  3333 34678999999999875432222 2233333322   3564 55999999864321101   111


Q ss_pred             HH-HHHH--cCCcEEEeecCCCC
Q 032243           78 KA-FADE--IGIPFMETSAKDST   97 (144)
Q Consensus        78 ~~-~~~~--~~~~~~~~Sa~~~~   97 (144)
                      .. +...  .+.+++.+||++..
T Consensus       160 ~~~~~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         160 KHRFWTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             HHHHHHhhCCCCcEEEEeeccCC
Confidence            11 2211  13589999999873

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PRK07560 elongation factor EF-2; Reviewed

Probab=97.79  E-value=3.7e-05  Score=62.69  Aligned_cols=62  Identities=26%  Similarity=0.249  Sum_probs=45.0

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      |+||||+.+|.......+..+|++++|+|....-... ....+......   ..|.++++||+|..
T Consensus        91 liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~~---~~~~iv~iNK~D~~  152 (731)
T PRK07560         91 LIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALRE---RVKPVLFINKVDRL  152 (731)
T ss_pred             EEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHHc---CCCeEEEEECchhh
Confidence            7899999999888888899999999999987642222 22223322222   36789999999974

>smart00053 DYNc Dynamin, GTPase

Probab=97.78  E-value=0.00012  Score=51.93  Aligned_cols=90  Identities=12%  Similarity=0.179  Sum_probs=51.0

Q ss_pred             ceeccchh-------------HHhhhhhhhhcC-CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            2 QWDTAGQE-------------RFRTITSSYYRG-AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         2 i~Dt~G~~-------------~~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      |+||||..             ....+...|+++ .+.+++|+|++..-.-.+...+...+.   ....++++|+||.|..
T Consensus       129 LIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK~D~~  205 (240)
T smart00053      129 LIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITKLDLM  205 (240)
T ss_pred             EEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEECCCCC
Confidence            68999863             234467778884 569999998764221112222222222   2358999999999986


Q ss_pred             CCcccCHHHHHHHHHH----cCCcEEEeecCCCCC
Q 032243           68 ANKVVSYETAKAFADE----IGIPFMETSAKDSTN   98 (144)
Q Consensus        68 ~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~   98 (144)
                      .+..    +...+...    ++..|+.+--.....
T Consensus       206 ~~~~----~~~~~~~~~~~~l~~g~~~v~nr~~~d  236 (240)
T smart00053      206 DEGT----DARDILENKLLPLRRGYIGVVNRSQKD  236 (240)
T ss_pred             CccH----HHHHHHhCCccccCCCEEEEECCChHH
Confidence            4321    13333332    234566665544433

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=97.75  E-value=3.1e-05  Score=60.38  Aligned_cols=99  Identities=19%  Similarity=0.210  Sum_probs=63.1

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHH---HHH---HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc---
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SFN---NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV---   72 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~---   72 (144)
                      |.|+||+..|.+.+-.-...+|++++|+|++--.   .|+   .+++ ...+.+... -...+|.+||.|+..=.+-   
T Consensus       259 liDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~Lg-i~qlivaiNKmD~V~Wsq~RF~  336 (603)
T KOG0458|consen  259 LIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRSLG-ISQLIVAINKMDLVSWSQDRFE  336 (603)
T ss_pred             EecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHH-HHHHHHHcC-cceEEEEeecccccCccHHHHH
Confidence            6899999999887766677899999999986421   222   1122 122222221 3567889999998642111   


Q ss_pred             -CHHHHHHHH-HHcC-----CcEEEeecCCCCCHHHH
Q 032243           73 -SYETAKAFA-DEIG-----IPFMETSAKDSTNVEQA  102 (144)
Q Consensus        73 -~~~~~~~~~-~~~~-----~~~~~~Sa~~~~~i~~l  102 (144)
                       -...+..+. +..|     +.|+++|+.+|+|+...
T Consensus       337 eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  337 EIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             HHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence             122334444 4444     37999999999988754

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.73  E-value=3.7e-05  Score=56.04  Aligned_cols=105  Identities=15%  Similarity=0.222  Sum_probs=67.5

Q ss_pred             ceeccchhHHhhhhhhhhcC---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC--HHH
Q 032243            2 QWDTAGQERFRTITSSYYRG---AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YET   76 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~   76 (144)
                      |.|+||++-..   ...+.+   .|++++++..+++.+--...+-+..+....  -..++++-||+||..+....  .++
T Consensus       129 fVDCPGHDiLM---aTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--LkhiiilQNKiDli~e~~A~eq~e~  203 (466)
T KOG0466|consen  129 FVDCPGHDILM---ATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLIKESQALEQHEQ  203 (466)
T ss_pred             eccCCchHHHH---HHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hceEEEEechhhhhhHHHHHHHHHH
Confidence            68999987543   333333   488888888776432222222233332222  25689999999996544321  223


Q ss_pred             HHHHHHHc---CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           77 AKAFADEI---GIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        77 ~~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ++.|....   +.|++++||.-++||+.+.+.|...+.
T Consensus       204 I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP  241 (466)
T KOG0466|consen  204 IQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP  241 (466)
T ss_pred             HHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence            34444432   469999999999999999999998874

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=97.73  E-value=0.00011  Score=53.35  Aligned_cols=90  Identities=18%  Similarity=0.213  Sum_probs=57.4

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcccC---HHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVVS---YETA   77 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~---~~~~   77 (144)
                      ..|+||+..|-+.+-.-....|+.|+|++++|-+--.. .+-+-..++.   ..| +++++||.|+.+..+..   ..+.
T Consensus        79 hVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqT-rEHiLlarqv---Gvp~ivvflnK~Dmvdd~ellelVemEv  154 (394)
T COG0050          79 HVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV---GVPYIVVFLNKVDMVDDEELLELVEMEV  154 (394)
T ss_pred             eccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcc-hhhhhhhhhc---CCcEEEEEEecccccCcHHHHHHHHHHH
Confidence            36999999998876666677899999999987432121 1111111122   244 56679999997644321   2355


Q ss_pred             HHHHHHcCC-----cEEEeecCC
Q 032243           78 KAFADEIGI-----PFMETSAKD   95 (144)
Q Consensus        78 ~~~~~~~~~-----~~~~~Sa~~   95 (144)
                      +.+...+++     |++.-||..
T Consensus       155 reLLs~y~f~gd~~Pii~gSal~  177 (394)
T COG0050         155 RELLSEYGFPGDDTPIIRGSALK  177 (394)
T ss_pred             HHHHHHcCCCCCCcceeechhhh
Confidence            667777764     677777664

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.72  E-value=0.00021  Score=39.12  Aligned_cols=45  Identities=24%  Similarity=0.279  Sum_probs=27.5

Q ss_pred             cCCCEEEEEEeCCCHHH--HHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 032243           20 RGAHGIIIVYDVTDQES--FNNVKQWLNEIDRYASDNVNKLLVGNKCD   65 (144)
Q Consensus        20 ~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ilv~nK~D   65 (144)
                      +=.++++|++|++....  .++-..++..++.... +.|+++|.||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence            34799999999998653  3443445666665553 589999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=97.69  E-value=0.00014  Score=56.13  Aligned_cols=80  Identities=19%  Similarity=0.271  Sum_probs=51.9

Q ss_pred             hHHhhhhhhhhcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCC
Q 032243            9 ERFRTITSSYYRGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGI   86 (144)
Q Consensus         9 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~   86 (144)
                      +-|+.+|+- ++++|+||.++|+.++--|.  ++..+...+.    +..-.+|++||+||.++...  ..-..+....++
T Consensus       163 E~WRQLWRV-lErSDivvqIVDARnPllfr~~dLe~Yvke~d----~~K~~~LLvNKaDLl~~~qr--~aWa~YF~~~ni  235 (562)
T KOG1424|consen  163 EIWRQLWRV-LERSDIVVQIVDARNPLLFRSPDLEDYVKEVD----PSKANVLLVNKADLLPPEQR--VAWAEYFRQNNI  235 (562)
T ss_pred             HHHHHHHHH-HhhcceEEEEeecCCccccCChhHHHHHhccc----cccceEEEEehhhcCCHHHH--HHHHHHHHhcCc
Confidence            345666665 89999999999999875443  3333333332    23567999999999753221  122223445568


Q ss_pred             cEEEeecCC
Q 032243           87 PFMETSAKD   95 (144)
Q Consensus        87 ~~~~~Sa~~   95 (144)
                      +++..||..
T Consensus       236 ~~vf~SA~~  244 (562)
T KOG1424|consen  236 PVVFFSALA  244 (562)
T ss_pred             eEEEEeccc
Confidence            999999886

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=97.69  E-value=0.0001  Score=49.05  Aligned_cols=60  Identities=23%  Similarity=0.266  Sum_probs=41.4

Q ss_pred             ceeccchhH----HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 032243            2 QWDTAGQER----FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKC   64 (144)
Q Consensus         2 i~Dt~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~   64 (144)
                      |+||||...    ...++..|+..+|++|+|.+.+...+-.+...+.......   ...+++|.||+
T Consensus       105 lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  105 LVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             EEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             EEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            789999632    3467888999999999999998854444444444444333   34589999985

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=97.63  E-value=0.00015  Score=49.57  Aligned_cols=53  Identities=25%  Similarity=0.253  Sum_probs=41.9

Q ss_pred             EEEEeCCCCCCCcccCHHHHHHHHHHcC--CcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           58 LLVGNKCDLTANKVVSYETAKAFADEIG--IPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        58 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      ++|+||.||.+.-....+...+-++..+  .+++.+|+++|+|++++++++....
T Consensus       146 llVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         146 LLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             EEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            8999999997655555565555555554  7999999999999999999887653

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=97.63  E-value=6.8e-05  Score=52.74  Aligned_cols=114  Identities=21%  Similarity=0.221  Sum_probs=75.7

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHH-------HHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCc
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES-------FNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTANK   70 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~   70 (144)
                      +.|+|||...++-|-+++++.-.++|++.++.-+.       -+.+.+....+...-.    .+.++|+++||.|+..++
T Consensus       203 mvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDlLEek  282 (359)
T KOG0085|consen  203 MVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEK  282 (359)
T ss_pred             eeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhhhhhh
Confidence            68999999999999999999999999987654321       1222232333322211    267899999999986432


Q ss_pred             c----------------cCHHHHHHHHHHc----C------CcEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243           71 V----------------VSYETAKAFADEI----G------IPFMETSAKDSTNVEQAFMAMAASIKDRMA  115 (144)
Q Consensus        71 ~----------------~~~~~~~~~~~~~----~------~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~  115 (144)
                      .                -..+.++.++..+    +      +.-..++|.+-+||.-+|..+.+.+.+...
T Consensus       283 I~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L  353 (359)
T KOG0085|consen  283 ILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL  353 (359)
T ss_pred             hhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence            1                1122233333222    2      234678899999999999999998876544

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.57  E-value=0.00021  Score=52.06  Aligned_cols=54  Identities=24%  Similarity=0.229  Sum_probs=38.6

Q ss_pred             CcEEEEEeCCCCCCCcccCHHHHHHHHHHc--CCcEEEeecCCCCCHHHHHHHHHH
Q 032243           55 VNKLLVGNKCDLTANKVVSYETAKAFADEI--GIPFMETSAKDSTNVEQAFMAMAA  108 (144)
Q Consensus        55 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~i~~  108 (144)
                      ..-++|+||+|+.+......+......+..  ..+++++||++|+|+++++++|..
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~  286 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET  286 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            566999999999642221123333333333  468999999999999999999876

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=97.57  E-value=0.0003  Score=53.58  Aligned_cols=80  Identities=19%  Similarity=0.206  Sum_probs=51.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +|.||||++.|..-....+.-+|.+++|+|+..-- -.....++. +-  ...++|++=++||.|-....+  .+-+.++
T Consensus        84 NLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGi-E~qT~KLfe-Vc--rlR~iPI~TFiNKlDR~~rdP--~ELLdEi  157 (528)
T COG4108          84 NLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGI-EPQTLKLFE-VC--RLRDIPIFTFINKLDREGRDP--LELLDEI  157 (528)
T ss_pred             eccCCCCccccchhHHHHHHhhheeeEEEecccCc-cHHHHHHHH-HH--hhcCCceEEEeeccccccCCh--HHHHHHH
Confidence            57899999999988888888899999999986310 011111111 22  223699999999999644333  3333334


Q ss_pred             HHHcCC
Q 032243           81 ADEIGI   86 (144)
Q Consensus        81 ~~~~~~   86 (144)
                      .+.+++
T Consensus       158 E~~L~i  163 (528)
T COG4108         158 EEELGI  163 (528)
T ss_pred             HHHhCc
Confidence            444443

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=97.53  E-value=0.00011  Score=58.47  Aligned_cols=62  Identities=24%  Similarity=0.348  Sum_probs=47.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL   66 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl   66 (144)
                      +|.||||+-.|..-....+.-+|++++|+|..+--.++. ..++.+.-.   ...|+++++||.|.
T Consensus       200 nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhaiq---~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  200 NILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAIQ---NRLPIVVVINKVDR  261 (971)
T ss_pred             eeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHHh---ccCcEEEEEehhHH
Confidence            588999999998877788899999999999987655553 333333322   25899999999996

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=97.51  E-value=0.00037  Score=56.44  Aligned_cols=63  Identities=24%  Similarity=0.301  Sum_probs=46.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      +|+||||+-+|..-....++=+|++++|+|..+--... ....|.....+   .+|.++++||.|..
T Consensus        79 NlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~Q-TEtv~rqa~~~---~vp~i~fiNKmDR~  141 (697)
T COG0480          79 NLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQ-TETVWRQADKY---GVPRILFVNKMDRL  141 (697)
T ss_pred             EEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeec-HHHHHHHHhhc---CCCeEEEEECcccc
Confidence            58999999999998888899999999999987531111 12223333333   58999999999974

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.40  E-value=0.0028  Score=42.74  Aligned_cols=80  Identities=19%  Similarity=0.275  Sum_probs=54.2

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA   81 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~   81 (144)
                      |+|||+...  ......+..+|.+++++..+. .+...+..++..+...   +.++.+|+||.|....   ...+...++
T Consensus        97 iiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~~~~~~~  167 (179)
T cd03110          97 IIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAEEIEDYC  167 (179)
T ss_pred             EEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHHHHHHHH
Confidence            689996542  233456788999999998874 3555666666655543   3678999999996432   245566677


Q ss_pred             HHcCCcEEE
Q 032243           82 DEIGIPFME   90 (144)
Q Consensus        82 ~~~~~~~~~   90 (144)
                      +..+++++.
T Consensus       168 ~~~~~~vl~  176 (179)
T cd03110         168 EEEGIPILG  176 (179)
T ss_pred             HHcCCCeEE
Confidence            777877653

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.39  E-value=0.00051  Score=46.37  Aligned_cols=44  Identities=30%  Similarity=0.209  Sum_probs=27.4

Q ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243           23 HGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA   68 (144)
Q Consensus        23 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~   68 (144)
                      |++++|+|+.++.+..+ ..+...+. ....+.|+++|+||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence            78999999987532211 12222211 1122479999999999954

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=97.35  E-value=0.01  Score=44.02  Aligned_cols=59  Identities=19%  Similarity=0.274  Sum_probs=46.0

Q ss_pred             CcEEEEEeCCCCC----CCccc-------CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           55 VNKLLVGNKCDLT----ANKVV-------SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        55 ~p~ilv~nK~Dl~----~~~~~-------~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      +|++||.+|+|..    .+.+.       -...++.||..+|..++.+|++...|++-+...|...+...
T Consensus       223 i~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG~  292 (473)
T KOG3905|consen  223 IPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYGF  292 (473)
T ss_pred             CcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcCc
Confidence            8999999999982    22221       12345777888899999999999999999999998887643

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.31  E-value=0.0012  Score=49.66  Aligned_cols=100  Identities=17%  Similarity=0.215  Sum_probs=61.9

Q ss_pred             ceeccchhHHhhhhhhhhc--CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc-------
Q 032243            2 QWDTAGQERFRTITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV-------   72 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-------   72 (144)
                      |.|.+|+.+|....-+-+.  ..|.+++|++++.--... ..+-+..+...   ++|++++.+|+|+..+..+       
T Consensus       253 fiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~AL---~iPfFvlvtK~Dl~~~~~~~~tv~~l  328 (591)
T KOG1143|consen  253 FIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAAL---NIPFFVLVTKMDLVDRQGLKKTVKDL  328 (591)
T ss_pred             EeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHHh---CCCeEEEEEeeccccchhHHHHHHHH
Confidence            6899999999876544443  368888888876432211 22223333333   5999999999999654221       


Q ss_pred             -----------------CHHHHHHHHHHc---C-CcEEEeecCCCCCHHHHHHH
Q 032243           73 -----------------SYETAKAFADEI---G-IPFMETSAKDSTNVEQAFMA  105 (144)
Q Consensus        73 -----------------~~~~~~~~~~~~---~-~~~~~~Sa~~~~~i~~l~~~  105 (144)
                                       +..++...+...   + .|+|.+|..+|+|+.-+...
T Consensus       329 ~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f  382 (591)
T KOG1143|consen  329 SNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF  382 (591)
T ss_pred             HHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence                             112222222221   2 38999999999998765543

>PTZ00258 GTP-binding protein; Provisional

Probab=97.20  E-value=0.0039  Score=47.40  Aligned_cols=43  Identities=19%  Similarity=0.176  Sum_probs=28.2

Q ss_pred             CCcEEEEEeCC--CC-CCCcccCHHHHHHHHHHc-CCcEEEeecCCCC
Q 032243           54 NVNKLLVGNKC--DL-TANKVVSYETAKAFADEI-GIPFMETSAKDST   97 (144)
Q Consensus        54 ~~p~ilv~nK~--Dl-~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~   97 (144)
                      ..|+++++|+.  |+ ..... ..+.+..++... +.+++.+||+-..
T Consensus       220 ~KP~iyv~N~~E~D~~~~~~~-~~~~l~~~~~~~~~~~~v~~sa~~E~  266 (390)
T PTZ00258        220 AKPMIYLVNMSEKDFIRQKNK-WLAKIKEWVGEKGGGPIIPYSAEFEE  266 (390)
T ss_pred             cCCEEEEEECchhhhcccchH-HHHHHHHHHHhcCCCeEEEeeHHHHH
Confidence            48999999999  76 22221 234445555555 4789999986554

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=97.19  E-value=0.002  Score=47.83  Aligned_cols=89  Identities=19%  Similarity=0.188  Sum_probs=56.2

Q ss_pred             eeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc---CHHHHHH
Q 032243            3 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV---SYETAKA   79 (144)
Q Consensus         3 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~---~~~~~~~   79 (144)
                      .|+||+..|-+.+-.-...-|++|+|+..+|-.--. .++-+...++..  -..+++++||.|+.+..+.   -+-++++
T Consensus       122 ~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQ-TrEHlLLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RE  198 (449)
T KOG0460|consen  122 TDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQ-TREHLLLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRE  198 (449)
T ss_pred             CCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcc-hHHHHHHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHH
Confidence            489999988876655556689999999998843211 222111122222  2457888999999744331   1335566


Q ss_pred             HHHHcCC-----cEEEeecC
Q 032243           80 FADEIGI-----PFMETSAK   94 (144)
Q Consensus        80 ~~~~~~~-----~~~~~Sa~   94 (144)
                      +...+++     |++.-||.
T Consensus       199 lLse~gf~Gd~~PvI~GSAL  218 (449)
T KOG0460|consen  199 LLSEFGFDGDNTPVIRGSAL  218 (449)
T ss_pred             HHHHcCCCCCCCCeeecchh
Confidence            7777764     78877654

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=97.14  E-value=0.0025  Score=46.87  Aligned_cols=72  Identities=13%  Similarity=0.093  Sum_probs=39.4

Q ss_pred             CceeccchhHHhh-------hhhhhh--cCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCC--CCcEEEEEeCCCCCC
Q 032243            1 MQWDTAGQERFRT-------ITSSYY--RGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASD--NVNKLLVGNKCDLTA   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~-------~~~~~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~   68 (144)
                      ++|||||..+...       ....++  .+.|+++||..++... +... ...+..+......  -.+++|++|+.|..+
T Consensus        89 ~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~  167 (313)
T TIGR00991        89 NIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP  167 (313)
T ss_pred             EEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence            4899999754321       122222  2689999996654321 1111 2233333332211  256899999999765


Q ss_pred             CcccC
Q 032243           69 NKVVS   73 (144)
Q Consensus        69 ~~~~~   73 (144)
                      +...+
T Consensus       168 pd~~~  172 (313)
T TIGR00991       168 PDGLE  172 (313)
T ss_pred             CCCCC
Confidence            44333

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.10  E-value=0.0096  Score=40.07  Aligned_cols=91  Identities=10%  Similarity=0.092  Sum_probs=70.4

Q ss_pred             CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHH
Q 032243           21 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVE  100 (144)
Q Consensus        21 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  100 (144)
                      +.|.++|++|.+..-++..++.-+..+....--.. +.++.+-........+...++.+++..++.|++.+.-.+.++..
T Consensus        64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~fflGK-VCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~  142 (176)
T PF11111_consen   64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFFLGK-VCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRT  142 (176)
T ss_pred             eeEEEEEEEecCCcccHHHHHHHHhhCChhhhccc-eEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHH
Confidence            47999999999999999999887777733222223 34444444444556677889999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 032243          101 QAFMAMAASIKD  112 (144)
Q Consensus       101 ~l~~~i~~~~~~  112 (144)
                      .+-+.+.+.++.
T Consensus       143 ~lAqRLL~~lqi  154 (176)
T PF11111_consen  143 SLAQRLLRMLQI  154 (176)
T ss_pred             HHHHHHHHHHHH
Confidence            998888888764

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=97.09  E-value=0.0078  Score=46.88  Aligned_cols=59  Identities=15%  Similarity=0.202  Sum_probs=44.6

Q ss_pred             CcEEEEEeCCCCCC----Ccc-------cCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           55 VNKLLVGNKCDLTA----NKV-------VSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        55 ~p~ilv~nK~Dl~~----~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      +|++||.+|.|...    ...       .-.+.++.++-.+|..+|.+|++...+++.++..|...+...
T Consensus       197 ipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~  266 (472)
T PF05783_consen  197 IPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGF  266 (472)
T ss_pred             cceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccC
Confidence            79999999999631    111       112345667778889999999999999999998887777643

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.08  E-value=0.0026  Score=49.93  Aligned_cols=99  Identities=22%  Similarity=0.453  Sum_probs=72.5

Q ss_pred             hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCC--CCcccCHHHHHHHHHHc-CCcEEE
Q 032243           15 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLT--ANKVVSYETAKAFADEI-GIPFME   90 (144)
Q Consensus        15 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~   90 (144)
                      -..|...+|++||||.+.+..+|..+..+...+..+.. ..+|+++++++.-..  ..+.+.....+.+...+ ...+|+
T Consensus        89 ~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~e  168 (749)
T KOG0705|consen   89 DAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYE  168 (749)
T ss_pred             hhhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceee
Confidence            35677889999999999999999988776666644432 357888888865431  23334444555554444 578999


Q ss_pred             eecCCCCCHHHHHHHHHHHHHHh
Q 032243           91 TSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        91 ~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      +++.+|.++...|+.+...+...
T Consensus       169 t~atyGlnv~rvf~~~~~k~i~~  191 (749)
T KOG0705|consen  169 TCATYGLNVERVFQEVAQKIVQL  191 (749)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999998887654

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.08  E-value=0.0022  Score=47.60  Aligned_cols=95  Identities=26%  Similarity=0.298  Sum_probs=61.7

Q ss_pred             cch-hHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc
Q 032243            6 AGQ-ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI   84 (144)
Q Consensus         6 ~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~   84 (144)
                      +|+ .++.......+..+|+++-|+|+.++.+...     ..+..... ..+.++|+||.||.+... ..+-...+....
T Consensus        18 ~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v~-~k~~i~vlNK~DL~~~~~-~~~W~~~~~~~~   90 (322)
T COG1161          18 PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIVK-EKPKLLVLNKADLAPKEV-TKKWKKYFKKEE   90 (322)
T ss_pred             CCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHHc-cCCcEEEEehhhcCCHHH-HHHHHHHHHhcC
Confidence            454 4677777888899999999999998754332     11112221 356699999999965433 222333333334


Q ss_pred             CCcEEEeecCCCCCHHHHHHHHH
Q 032243           85 GIPFMETSAKDSTNVEQAFMAMA  107 (144)
Q Consensus        85 ~~~~~~~Sa~~~~~i~~l~~~i~  107 (144)
                      +...+.+++..+.+...+...+.
T Consensus        91 ~~~~~~v~~~~~~~~~~i~~~~~  113 (322)
T COG1161          91 GIKPIFVSAKSRQGGKKIRKALE  113 (322)
T ss_pred             CCccEEEEeecccCccchHHHHH
Confidence            66778899998888887775333

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.98  E-value=0.00077  Score=50.55  Aligned_cols=65  Identities=18%  Similarity=0.236  Sum_probs=45.3

Q ss_pred             ceeccchhH-----------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243            2 QWDTAGQER-----------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         2 i~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   69 (144)
                      |+||||.-.           |.....=|.+++|.++++||..--+--++....+..++.+.   -.+-||+||+|..+.
T Consensus       151 iVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~E---dkiRVVLNKADqVdt  226 (532)
T KOG1954|consen  151 IVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHE---DKIRVVLNKADQVDT  226 (532)
T ss_pred             eeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCc---ceeEEEeccccccCH
Confidence            789999522           44456777899999999999754333344455556665544   457889999998653

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=96.98  E-value=0.002  Score=51.04  Aligned_cols=63  Identities=24%  Similarity=0.294  Sum_probs=44.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      +++||||+-.|..-.+..++-.|++++++|...--- ......+....++   ++|.+.++||.|-.
T Consensus       107 NiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVq-sQt~tV~rQ~~ry---~vP~i~FiNKmDRm  169 (721)
T KOG0465|consen  107 NIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVE-SQTETVWRQMKRY---NVPRICFINKMDRM  169 (721)
T ss_pred             EEecCCCceeEEEEehhhhhhccCeEEEEEccccee-hhhHHHHHHHHhc---CCCeEEEEehhhhc
Confidence            579999999988877888888999999998654210 0111223334444   48999999999963

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.98  E-value=0.0058  Score=43.53  Aligned_cols=109  Identities=19%  Similarity=0.275  Sum_probs=62.2

Q ss_pred             CceeccchhHHh-hh--hhhhhcCCCEEEEEEeCCCHH--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc-ccCH
Q 032243            1 MQWDTAGQERFR-TI--TSSYYRGAHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK-VVSY   74 (144)
Q Consensus         1 qi~Dt~G~~~~~-~~--~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~   74 (144)
                      ++||.|||..|- +.  ....++++-+++||+|+.+..  .+..+..........+ +++.+=|.+.|.|=.... .+..
T Consensus        78 ~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvN-p~in~EVfiHKvDGLsdd~kiet  156 (347)
T KOG3887|consen   78 QVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVN-PNINFEVFIHKVDGLSDDFKIET  156 (347)
T ss_pred             EEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecC-CCceEEEEEEeccCCchhhhhhh
Confidence            589999996532 21  356678999999999987642  2222222222223333 467788889999954321 1111


Q ss_pred             -HH----HHHHHHHcC-----CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           75 -ET----AKAFADEIG-----IPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        75 -~~----~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                       ..    ...-....|     +.++.+|.. ...|.+.|..++..+.
T Consensus       157 qrdI~qr~~d~l~d~gle~v~vsf~LTSIy-DHSIfEAFSkvVQkLi  202 (347)
T KOG3887|consen  157 QRDIHQRTNDELADAGLEKVQVSFYLTSIY-DHSIFEAFSKVVQKLI  202 (347)
T ss_pred             HHHHHHHhhHHHHhhhhccceEEEEEeeec-chHHHHHHHHHHHHHh
Confidence             01    111112223     245566655 4788888887776654

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=96.90  E-value=0.026  Score=43.44  Aligned_cols=89  Identities=9%  Similarity=0.165  Sum_probs=54.8

Q ss_pred             hhhhc-CCCEEEEEE-eCC----CHHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcE
Q 032243           16 SSYYR-GAHGIIIVY-DVT----DQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPF   88 (144)
Q Consensus        16 ~~~~~-~~d~~i~v~-d~~----~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~   88 (144)
                      +..+. ++|..|+|. |.+    .+..+.+. ..++..+...   ++|+++++||.|-..+.  .......+.+.++.++
T Consensus       138 ~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpv  212 (492)
T TIGR02836       138 RKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPV  212 (492)
T ss_pred             HHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCce
Confidence            44455 899999998 764    11223333 3566666655   48999999999932221  2333445666778888


Q ss_pred             EEeecCC--CCCHHHHHHHHHHH
Q 032243           89 METSAKD--STNVEQAFMAMAAS  109 (144)
Q Consensus        89 ~~~Sa~~--~~~i~~l~~~i~~~  109 (144)
                      +.+|+..  ..+|..+++.++-.
T Consensus       213 l~v~c~~l~~~DI~~il~~vL~E  235 (492)
T TIGR02836       213 LAMDVESMRESDILSVLEEVLYE  235 (492)
T ss_pred             EEEEHHHcCHHHHHHHHHHHHhc
Confidence            8888765  24555555544433

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=96.89  E-value=0.0013  Score=48.51  Aligned_cols=92  Identities=15%  Similarity=0.170  Sum_probs=59.2

Q ss_pred             HHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCc----EEEEEeCCCCCCCcccCHHHHHHHHHHcC
Q 032243           10 RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN----KLLVGNKCDLTANKVVSYETAKAFADEIG   85 (144)
Q Consensus        10 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p----~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~   85 (144)
                      -|....+. +..+|.++.|.|++.|.--......+.-+....-...|    ++=|-||+|..+....        .+.. 
T Consensus       247 AF~ATLee-VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e--------~E~n-  316 (410)
T KOG0410|consen  247 AFQATLEE-VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE--------EEKN-  316 (410)
T ss_pred             HHHHHHHH-HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc--------cccC-
Confidence            35544454 56799999999999987554444444444444322222    3556788886433221        1112 


Q ss_pred             CcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           86 IPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        86 ~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                       ..+.+||.+|+|++++.+.+-..+..
T Consensus       317 -~~v~isaltgdgl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  317 -LDVGISALTGDGLEELLKAEETKVAS  342 (410)
T ss_pred             -CccccccccCccHHHHHHHHHHHhhh
Confidence             25789999999999999988887754

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=96.76  E-value=0.02  Score=41.92  Aligned_cols=90  Identities=18%  Similarity=0.156  Sum_probs=54.0

Q ss_pred             hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-------cCC--cEE
Q 032243           19 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADE-------IGI--PFM   89 (144)
Q Consensus        19 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~--~~~   89 (144)
                      .+-+|.+++|.-..--   ++++-+..-+..     +-=++|+||+|... ......++......       .+|  +++
T Consensus       162 ~~~aDt~~~v~~pg~G---D~~Q~iK~GimE-----iaDi~vINKaD~~~-A~~a~r~l~~al~~~~~~~~~~~W~ppv~  232 (323)
T COG1703         162 ANMADTFLVVMIPGAG---DDLQGIKAGIME-----IADIIVINKADRKG-AEKAARELRSALDLLREVWRENGWRPPVV  232 (323)
T ss_pred             hhhcceEEEEecCCCC---cHHHHHHhhhhh-----hhheeeEeccChhh-HHHHHHHHHHHHHhhcccccccCCCCcee
Confidence            4457888877754322   233333333322     23488999999532 22112222222221       133  899


Q ss_pred             EeecCCCCCHHHHHHHHHHHHHHhhccC
Q 032243           90 ETSAKDSTNVEQAFMAMAASIKDRMASQ  117 (144)
Q Consensus        90 ~~Sa~~~~~i~~l~~~i~~~~~~~~~~~  117 (144)
                      .+||..|+|++++++.|.++......+.
T Consensus       233 ~t~A~~g~Gi~~L~~ai~~h~~~~~~sg  260 (323)
T COG1703         233 TTSALEGEGIDELWDAIEDHRKFLTESG  260 (323)
T ss_pred             EeeeccCCCHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999987554443

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=96.64  E-value=0.019  Score=39.96  Aligned_cols=92  Identities=12%  Similarity=0.219  Sum_probs=53.2

Q ss_pred             hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCCcccC-------HHHHHHHHHHcCCcEE
Q 032243           19 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD--NVNKLLVGNKCDLTANKVVS-------YETAKAFADEIGIPFM   89 (144)
Q Consensus        19 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~~~   89 (144)
                      ..+.|+++||+...... -.+ ...+..+....+.  -..++|++|..|...+..+.       ......+.+..+-.++
T Consensus        81 ~~g~ha~llVi~~~r~t-~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~  158 (212)
T PF04548_consen   81 SPGPHAFLLVIPLGRFT-EED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH  158 (212)
T ss_dssp             TT-ESEEEEEEETTB-S-HHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred             cCCCeEEEEEEecCcch-HHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence            45789999999988332 111 2223333332221  24588889988875544321       1123445555666777


Q ss_pred             EeecC------CCCCHHHHHHHHHHHHHH
Q 032243           90 ETSAK------DSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        90 ~~Sa~------~~~~i~~l~~~i~~~~~~  112 (144)
                      .++.+      ....+.+|++.|-.++.+
T Consensus       159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~  187 (212)
T PF04548_consen  159 VFNNKTKDKEKDESQVSELLEKIEEMVQE  187 (212)
T ss_dssp             ECCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeccccchhhhHHHHHHHHHHHHHHHHH
Confidence            77766      335677888888777764

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>KOG2484 consensus GTPase [General function prediction only]

Probab=96.47  E-value=0.01  Score=44.90  Aligned_cols=57  Identities=21%  Similarity=0.218  Sum_probs=39.4

Q ss_pred             hHHhhhhhhhhcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243            9 ERFRTITSSYYRGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         9 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   69 (144)
                      .-|..-.+..++.+|++|-|+|+.||.+-.  ++..++..    ..++...|+|+||+||.+.
T Consensus       134 kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~----~~gnKkLILVLNK~DLVPr  192 (435)
T KOG2484|consen  134 KAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQ----AHGNKKLILVLNKIDLVPR  192 (435)
T ss_pred             HHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHh----ccCCceEEEEeehhccCCH
Confidence            346666677788999999999999986432  33333221    2234678999999999653

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=96.44  E-value=0.024  Score=42.95  Aligned_cols=105  Identities=14%  Similarity=0.110  Sum_probs=50.0

Q ss_pred             ceeccchhHHhhhhhhh-----hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC-------CCC
Q 032243            2 QWDTAGQERFRTITSSY-----YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL-------TAN   69 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl-------~~~   69 (144)
                      +||.||.-........|     +..-|.+|++.+-.    |..-+.++..-....  +.|+++|-||.|.       ..+
T Consensus        90 lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~r----f~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p  163 (376)
T PF05049_consen   90 LWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSER----FTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERRRKP  163 (376)
T ss_dssp             EEEE--GGGSS--HHHHHHHTTGGG-SEEEEEESSS------HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHCC-S
T ss_pred             EEeCCCCCCCCCCHHHHHHHccccccCEEEEEeCCC----CchhhHHHHHHHHHc--CCcEEEEEecccccHhhhhccCC
Confidence            79999963322222333     45679888877632    433333333333333  5799999999995       122


Q ss_pred             cccCHHHHHHH----HH----HcCC---cEEEeecCCC--CCHHHHHHHHHHHHHH
Q 032243           70 KVVSYETAKAF----AD----EIGI---PFMETSAKDS--TNVEQAFMAMAASIKD  112 (144)
Q Consensus        70 ~~~~~~~~~~~----~~----~~~~---~~~~~Sa~~~--~~i~~l~~~i~~~~~~  112 (144)
                      +..+.++..+.    +.    ..++   ++|-+|..+-  .+...+.+.+.+.+..
T Consensus       164 ~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~  219 (376)
T PF05049_consen  164 RTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPA  219 (376)
T ss_dssp             TT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-G
T ss_pred             cccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHH
Confidence            22322222222    21    1233   6889998764  5677788877776654

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=96.29  E-value=0.036  Score=42.25  Aligned_cols=92  Identities=15%  Similarity=0.119  Sum_probs=53.3

Q ss_pred             hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCC
Q 032243           17 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDS   96 (144)
Q Consensus        17 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~   96 (144)
                      ..+..+|++|-|+|+.|+..-. . ..+........+....|+|+||+||.+- -+...=+.-+.+.+.---|..|..+.
T Consensus       209 KViDSSDVvvqVlDARDPmGTr-c-~~ve~ylkke~phKHli~vLNKvDLVPt-wvt~~Wv~~lSkeyPTiAfHAsi~ns  285 (572)
T KOG2423|consen  209 KVIDSSDVVVQVLDARDPMGTR-C-KHVEEYLKKEKPHKHLIYVLNKVDLVPT-WVTAKWVRHLSKEYPTIAFHASINNS  285 (572)
T ss_pred             HhhcccceeEEeeeccCCcccc-c-HHHHHHHhhcCCcceeEEEeeccccccH-HHHHHHHHHHhhhCcceeeehhhcCc
Confidence            3357899999999999874221 1 1222233333345788999999999542 22222222233333223456677777


Q ss_pred             CCHHHHHHHHHHHHH
Q 032243           97 TNVEQAFMAMAASIK  111 (144)
Q Consensus        97 ~~i~~l~~~i~~~~~  111 (144)
                      .|-..+++.+....+
T Consensus       286 fGKgalI~llRQf~k  300 (572)
T KOG2423|consen  286 FGKGALIQLLRQFAK  300 (572)
T ss_pred             cchhHHHHHHHHHHh
Confidence            787777775554443

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=96.22  E-value=0.047  Score=44.08  Aligned_cols=89  Identities=19%  Similarity=0.317  Sum_probs=55.8

Q ss_pred             ceeccchh---HHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243            2 QWDTAGQE---RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK   78 (144)
Q Consensus         2 i~Dt~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~   78 (144)
                      +.|.||..   ........+..++|++|||..+.+.-+..+ ...+...   ...+..++++-||.|....++-..+.+.
T Consensus       210 liDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~v---s~~KpniFIlnnkwDasase~ec~e~V~  285 (749)
T KOG0448|consen  210 LIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKV---SEEKPNIFILNNKWDASASEPECKEDVL  285 (749)
T ss_pred             eccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHh---hccCCcEEEEechhhhhcccHHHHHHHH
Confidence            56888853   455566777889999999998876544333 2233333   3235678888999998654443344444


Q ss_pred             HHHHHcCC--------cEEEeecC
Q 032243           79 AFADEIGI--------PFMETSAK   94 (144)
Q Consensus        79 ~~~~~~~~--------~~~~~Sa~   94 (144)
                      .....++.        .++.|||+
T Consensus       286 ~Qi~eL~v~~~~eA~DrvfFVS~~  309 (749)
T KOG0448|consen  286 KQIHELSVVTEKEAADRVFFVSAK  309 (749)
T ss_pred             HHHHhcCcccHhhhcCeeEEEecc
Confidence            44444431        47888855

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=96.21  E-value=0.018  Score=41.26  Aligned_cols=69  Identities=13%  Similarity=0.077  Sum_probs=38.6

Q ss_pred             CceeccchhHHh----------hhhhhhhc--CCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCC--CCcEEEEEeCCC
Q 032243            1 MQWDTAGQERFR----------TITSSYYR--GAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASD--NVNKLLVGNKCD   65 (144)
Q Consensus         1 qi~Dt~G~~~~~----------~~~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~--~~p~ilv~nK~D   65 (144)
                      .+|||||.....          .....|+.  ..|++++|..++... ++.+ ...+..+......  -.++++|.||.|
T Consensus        82 ~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d  160 (249)
T cd01853          82 NIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAA  160 (249)
T ss_pred             EEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCc
Confidence            379999965331          01233443  578888887665431 2221 2333333332221  257999999999


Q ss_pred             CCCCc
Q 032243           66 LTANK   70 (144)
Q Consensus        66 l~~~~   70 (144)
                      ..++.
T Consensus       161 ~~~p~  165 (249)
T cd01853         161 SSPPD  165 (249)
T ss_pred             cCCCC
Confidence            86443

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=96.15  E-value=0.01  Score=42.52  Aligned_cols=85  Identities=16%  Similarity=0.228  Sum_probs=48.0

Q ss_pred             hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc-----C--CcEEEe
Q 032243           19 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI-----G--IPFMET   91 (144)
Q Consensus        19 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~--~~~~~~   91 (144)
                      ..-+|.+++|+...--+....++   .-+..     +.=++|+||.|... ......+........     +  .+++.+
T Consensus       140 ~~~aD~~v~v~~Pg~GD~iQ~~K---aGimE-----iaDi~vVNKaD~~g-A~~~~~~l~~~l~l~~~~~~~W~ppV~~t  210 (266)
T PF03308_consen  140 ADMADTVVLVLVPGLGDEIQAIK---AGIME-----IADIFVVNKADRPG-ADRTVRDLRSMLHLLREREDGWRPPVLKT  210 (266)
T ss_dssp             HTTSSEEEEEEESSTCCCCCTB----TTHHH-----H-SEEEEE--SHHH-HHHHHHHHHHHHHHCSTSCTSB--EEEEE
T ss_pred             HHhcCeEEEEecCCCccHHHHHh---hhhhh-----hccEEEEeCCChHH-HHHHHHHHHHHHhhccccccCCCCCEEEE
Confidence            44578888888764332222211   11111     23488999999522 111122333333221     1  389999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHH
Q 032243           92 SAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        92 Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      ||.++.|++++++.|.++...
T Consensus       211 sA~~~~Gi~eL~~~i~~~~~~  231 (266)
T PF03308_consen  211 SALEGEGIDELWEAIDEHRDY  231 (266)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999887643

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=96.04  E-value=0.069  Score=37.91  Aligned_cols=59  Identities=27%  Similarity=0.293  Sum_probs=37.6

Q ss_pred             ceec-cchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243            2 QWDT-AGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL   66 (144)
Q Consensus         2 i~Dt-~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl   66 (144)
                      +.|| +|.+.|.   +...+++|.+|.|+|.+-+ ++...... ..+..... -.++++|+||.|-
T Consensus       138 ivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~~-sl~taeri-~~L~~elg-~k~i~~V~NKv~e  197 (255)
T COG3640         138 IVDTEAGIEHFG---RGTIEGVDLVIVVVDPSYK-SLRTAERI-KELAEELG-IKRIFVVLNKVDE  197 (255)
T ss_pred             EEecccchhhhc---cccccCCCEEEEEeCCcHH-HHHHHHHH-HHHHHHhC-CceEEEEEeeccc
Confidence            3455 3777666   5677899999999998643 34433332 22222221 2689999999995

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=96.03  E-value=0.12  Score=39.14  Aligned_cols=41  Identities=20%  Similarity=0.082  Sum_probs=27.2

Q ss_pred             CcEEEEEeCCCCC-CCcccCHHHHHHHHHHcCCcEEEeecCC
Q 032243           55 VNKLLVGNKCDLT-ANKVVSYETAKAFADEIGIPFMETSAKD   95 (144)
Q Consensus        55 ~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~   95 (144)
                      .|+++++|+.|.. .......+.+..++...+.+++++||.-
T Consensus       200 KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~  241 (364)
T PRK09601        200 KPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAKI  241 (364)
T ss_pred             CCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHHH
Confidence            8999999999851 1111123455556656678899999753

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=96.02  E-value=0.0098  Score=48.37  Aligned_cols=58  Identities=26%  Similarity=0.329  Sum_probs=42.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCH---HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ---ESFNNVKQWLNEIDRYASDNVNKLLVGNKCD   65 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D   65 (144)
                      +++|+||+-.|.+.......-+|++++++|..+-   .++.-+++    .+..   ...+++|+||+|
T Consensus        75 nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq----~~~~---~~~~~lvinkid  135 (887)
T KOG0467|consen   75 NLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQ----AWIE---GLKPILVINKID  135 (887)
T ss_pred             EEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHH----HHHc---cCceEEEEehhh
Confidence            4799999999999888888889999999998652   23222222    1111   246789999999

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=95.98  E-value=0.068  Score=38.78  Aligned_cols=72  Identities=17%  Similarity=0.128  Sum_probs=45.4

Q ss_pred             CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHH
Q 032243           21 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVE  100 (144)
Q Consensus        21 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  100 (144)
                      ..|..++|+|.+..  .+.+.. ...+....   .+.-+|+||.|....    .-.+..+....+.|+..++  +|++++
T Consensus       190 ~~~~~~LVl~a~~~--~~~~~~-~~~f~~~~---~~~g~IlTKlDe~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~  257 (272)
T TIGR00064       190 APDEVLLVLDATTG--QNALEQ-AKVFNEAV---GLTGIILTKLDGTAK----GGIILSIAYELKLPIKFIG--VGEKID  257 (272)
T ss_pred             CCceEEEEEECCCC--HHHHHH-HHHHHhhC---CCCEEEEEccCCCCC----ccHHHHHHHHHCcCEEEEe--CCCChH
Confidence            38999999998742  233322 22222222   356888999997432    2234455556789999988  778887


Q ss_pred             HHHH
Q 032243          101 QAFM  104 (144)
Q Consensus       101 ~l~~  104 (144)
                      ++..
T Consensus       258 dl~~  261 (272)
T TIGR00064       258 DLAP  261 (272)
T ss_pred             hCcc
Confidence            7654

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PHA02518 ParA-like protein; Provisional

Probab=95.74  E-value=0.1  Score=35.80  Aligned_cols=62  Identities=10%  Similarity=0.074  Sum_probs=36.7

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHH--HHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCC
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVN-KLLVGNKCDL   66 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl   66 (144)
                      |+||||..  .......+..+|.+|+++..+..+  ....+..++..+..... ..+ ..++.|+.+.
T Consensus        81 iiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~n~~~~  145 (211)
T PHA02518         81 VVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTD-GLPKFAFIISRAIK  145 (211)
T ss_pred             EEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCC-CCceEEEEEeccCC
Confidence            78999863  345567788999999999876432  22233333333322222 233 4566777653

>cd01900 YchF YchF subfamily

Probab=95.71  E-value=0.084  Score=38.37  Aligned_cols=42  Identities=24%  Similarity=0.136  Sum_probs=25.3

Q ss_pred             CcEEEEEeCCCCC-CCcccCHHHHHHHHHHcCCcEEEeecCCC
Q 032243           55 VNKLLVGNKCDLT-ANKVVSYETAKAFADEIGIPFMETSAKDS   96 (144)
Q Consensus        55 ~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~   96 (144)
                      .|+++++|+.|.. .............+...+.+++++||.-.
T Consensus       196 KP~i~v~N~~e~d~~~~~~~~~~~~~~~~~~~~~~i~~sa~~E  238 (274)
T cd01900         196 KPVLYVANVSEDDLANGNNKVLKVREIAAKEGAEVIPISAKIE  238 (274)
T ss_pred             CCceeecccCHHHhccccHHHHHHHHHHhcCCCeEEEeeHHHH
Confidence            7999999998831 11111122333444455778999998643

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=95.63  E-value=0.012  Score=42.61  Aligned_cols=101  Identities=20%  Similarity=0.249  Sum_probs=56.9

Q ss_pred             ceeccc----------hhHHhhhhhhhhcC---CCEEEEEEeCCCHH--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243            2 QWDTAG----------QERFRTITSSYYRG---AHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCDL   66 (144)
Q Consensus         2 i~Dt~G----------~~~~~~~~~~~~~~---~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl   66 (144)
                      +.|.||          -..+..+...|+-+   .--+.+++|.+.+-  .-.....|+...      ++|+.+|+||+|.
T Consensus       187 ~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~------~VP~t~vfTK~DK  260 (320)
T KOG2486|consen  187 EVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGEN------NVPMTSVFTKCDK  260 (320)
T ss_pred             EEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhc------CCCeEEeeehhhh
Confidence            467777          24466666777632   34455566665431  112222333222      6999999999997


Q ss_pred             CCCc------cc-CHHH-HHHH---HHHcCCcEEEeecCCCCCHHHHHHHHHH
Q 032243           67 TANK------VV-SYET-AKAF---ADEIGIPFMETSAKDSTNVEQAFMAMAA  108 (144)
Q Consensus        67 ~~~~------~~-~~~~-~~~~---~~~~~~~~~~~Sa~~~~~i~~l~~~i~~  108 (144)
                      ....      .. +... ...+   ......||+.+|+.++.|++.++-.|..
T Consensus       261 ~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  261 QKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             hhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence            4211      11 1111 1111   1122358899999999999998766554

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=95.62  E-value=0.077  Score=40.33  Aligned_cols=99  Identities=19%  Similarity=0.177  Sum_probs=55.9

Q ss_pred             ceeccchhHHhhhhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHH---
Q 032243            2 QWDTAGQERFRTITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYET---   76 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~---   76 (144)
                      |+|.+|+++|....-.-+  +-.|...+++-.+-- -..-.++-+......   .+|+++|.+|+|+-+.+.+ .+.   
T Consensus       223 FIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLALaL---~VPVfvVVTKIDMCPANiL-qEtmKl  297 (641)
T KOG0463|consen  223 FIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLALAL---HVPVFVVVTKIDMCPANIL-QETMKL  297 (641)
T ss_pred             EEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhhhh---cCcEEEEEEeeccCcHHHH-HHHHHH
Confidence            689999999877432222  235777777765421 111111111111121   5899999999998544332 222   


Q ss_pred             HHHHHHHcC--------------------------CcEEEeecCCCCCHHHHHHH
Q 032243           77 AKAFADEIG--------------------------IPFMETSAKDSTNVEQAFMA  105 (144)
Q Consensus        77 ~~~~~~~~~--------------------------~~~~~~Sa~~~~~i~~l~~~  105 (144)
                      +.++.+..+                          +|+|.+|-.+|.|+.-+...
T Consensus       298 l~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF  352 (641)
T KOG0463|consen  298 LTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF  352 (641)
T ss_pred             HHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence            222222211                          36899999999999765543

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=95.17  E-value=0.13  Score=44.56  Aligned_cols=49  Identities=22%  Similarity=0.319  Sum_probs=34.0

Q ss_pred             CCCEEEEEEeCCCH-----HHH----HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243           21 GAHGIIIVYDVTDQ-----ESF----NNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus        21 ~~d~~i~v~d~~~~-----~s~----~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   69 (144)
                      ..+++|+++|+.+-     ...    ..+..-+..+.....-..|+.|++||+|+..+
T Consensus       201 plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G  258 (1169)
T TIGR03348       201 PLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG  258 (1169)
T ss_pred             CCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence            48999999997542     111    23344555555555557999999999999765

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=95.15  E-value=0.2  Score=36.26  Aligned_cols=63  Identities=22%  Similarity=0.403  Sum_probs=46.0

Q ss_pred             hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEE
Q 032243           17 SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFM   89 (144)
Q Consensus        17 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~   89 (144)
                      ..+.++|.+|+|-..+- ..+.+++..+..+.+.   ++|..+|+||.++..     . +...+++..+++++
T Consensus       181 ~sl~~aD~ai~VTEPTp-~glhD~kr~~el~~~f---~ip~~iViNr~~~g~-----s-~ie~~~~e~gi~il  243 (284)
T COG1149         181 ASLKGADLAILVTEPTP-FGLHDLKRALELVEHF---GIPTGIVINRYNLGD-----S-EIEEYCEEEGIPIL  243 (284)
T ss_pred             HhhccCCEEEEEecCCc-cchhHHHHHHHHHHHh---CCceEEEEecCCCCc-----h-HHHHHHHHcCCCee
Confidence            44789999999988763 3566777666666555   499999999996532     2 66778888877654

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=95.15  E-value=0.17  Score=37.56  Aligned_cols=73  Identities=23%  Similarity=0.195  Sum_probs=45.8

Q ss_pred             CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHH
Q 032243           21 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVE  100 (144)
Q Consensus        21 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  100 (144)
                      ..+..++|+|++..  .+.+... ..+...   -.+.-+|+||.|....    .-.+.......++|+..++  +|++++
T Consensus       232 ~p~~~~LVl~a~~g--~~~~~~a-~~f~~~---~~~~giIlTKlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~  299 (318)
T PRK10416        232 APHEVLLVLDATTG--QNALSQA-KAFHEA---VGLTGIILTKLDGTAK----GGVVFAIADELGIPIKFIG--VGEGID  299 (318)
T ss_pred             CCceEEEEEECCCC--hHHHHHH-HHHHhh---CCCCEEEEECCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChh
Confidence            46889999998843  2333321 222211   1355789999995322    2234455667799999999  788888


Q ss_pred             HHHHH
Q 032243          101 QAFMA  105 (144)
Q Consensus       101 ~l~~~  105 (144)
                      ++...
T Consensus       300 Dl~~~  304 (318)
T PRK10416        300 DLQPF  304 (318)
T ss_pred             hCccC
Confidence            77543

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=94.97  E-value=0.19  Score=34.61  Aligned_cols=88  Identities=19%  Similarity=0.140  Sum_probs=50.1

Q ss_pred             ceeccchhHHh----hhhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243            2 QWDTAGQERFR----TITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE   75 (144)
Q Consensus         2 i~Dt~G~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~   75 (144)
                      |+||+|.....    ..+..++  ...+-+++|+|++...  +.+.. ...+....   .+-=+|+||.|....    .-
T Consensus        88 lIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~~-~~~~~~~~---~~~~lIlTKlDet~~----~G  157 (196)
T PF00448_consen   88 LIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLEQ-ALAFYEAF---GIDGLILTKLDETAR----LG  157 (196)
T ss_dssp             EEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHHH-HHHHHHHS---STCEEEEESTTSSST----TH
T ss_pred             EEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHHH-HHHHhhcc---cCceEEEEeecCCCC----cc
Confidence            68999953221    1122222  1578899999987643  33332 22222222   234677999996322    33


Q ss_pred             HHHHHHHHcCCcEEEeecCCCCCHHH
Q 032243           76 TAKAFADEIGIPFMETSAKDSTNVEQ  101 (144)
Q Consensus        76 ~~~~~~~~~~~~~~~~Sa~~~~~i~~  101 (144)
                      .+..+....+.|+-.++  +|+++++
T Consensus       158 ~~l~~~~~~~~Pi~~it--~Gq~V~D  181 (196)
T PF00448_consen  158 ALLSLAYESGLPISYIT--TGQRVDD  181 (196)
T ss_dssp             HHHHHHHHHTSEEEEEE--SSSSTTG
T ss_pred             cceeHHHHhCCCeEEEE--CCCChhc
Confidence            45667778888888887  5555543

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=94.96  E-value=0.14  Score=33.05  Aligned_cols=61  Identities=15%  Similarity=0.182  Sum_probs=40.9

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL   66 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl   66 (144)
                      ++|+++..  .......+..+|.++++++.+. .++..+...+..+.... ...++.+++|+.+-
T Consensus        49 IiD~p~~~--~~~~~~~l~~aD~vviv~~~~~-~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~  109 (139)
T cd02038          49 IIDTGAGI--SDNVLDFFLAADEVIVVTTPEP-TSITDAYALIKKLAKQL-RVLNFRVVVNRAES  109 (139)
T ss_pred             EEECCCCC--CHHHHHHHHhCCeEEEEcCCCh-hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCC
Confidence            68998753  3334567889999999998864 44555555555554333 24577899999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK14974 cell division protein FtsY; Provisional

Probab=94.93  E-value=0.42  Score=35.85  Aligned_cols=92  Identities=17%  Similarity=0.086  Sum_probs=54.5

Q ss_pred             ceeccchhHH----hhhhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243            2 QWDTAGQERF----RTITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE   75 (144)
Q Consensus         2 i~Dt~G~~~~----~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~   75 (144)
                      |+||+|....    ..-++.+.  -+.|.+++|+|+....   +.......+....   ..--+|+||.|....-    =
T Consensus       227 LIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~~---~~~giIlTKlD~~~~~----G  296 (336)
T PRK14974        227 LIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEAV---GIDGVILTKVDADAKG----G  296 (336)
T ss_pred             EEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhcC---CCCEEEEeeecCCCCc----c
Confidence            6899997431    11122222  2578999999986432   2222222232211   3457889999974322    2


Q ss_pred             HHHHHHHHcCCcEEEeecCCCCCHHHHHHH
Q 032243           76 TAKAFADEIGIPFMETSAKDSTNVEQAFMA  105 (144)
Q Consensus        76 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  105 (144)
                      .+..++...+.|+..++  +|++++++...
T Consensus       297 ~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~  324 (336)
T PRK14974        297 AALSIAYVIGKPILFLG--VGQGYDDLIPF  324 (336)
T ss_pred             HHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence            33445556789999988  78999877653

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=94.86  E-value=0.36  Score=34.92  Aligned_cols=50  Identities=22%  Similarity=0.220  Sum_probs=38.2

Q ss_pred             CcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           55 VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        55 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ++++.|.||+|.     ++.++..++++..+-  +.+|+.-+-|++.+++.|-+.+.
T Consensus       239 ~~ClYvYnKID~-----vs~eevdrlAr~Pns--vViSC~m~lnld~lle~iWe~l~  288 (364)
T KOG1486|consen  239 IKCLYVYNKIDQ-----VSIEEVDRLARQPNS--VVISCNMKLNLDRLLERIWEELN  288 (364)
T ss_pred             EEEEEEeeccce-----ecHHHHHHHhcCCCc--EEEEeccccCHHHHHHHHHHHhc
Confidence            678888899985     346677777765543  56778888999999998888875

>PF14331 ImcF-related_N: ImcF-related N-terminal domain

Probab=94.75  E-value=0.26  Score=35.61  Aligned_cols=93  Identities=20%  Similarity=0.342  Sum_probs=49.2

Q ss_pred             CCCEEEEEEeCCC-----HH--HHH----HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHH--HHHHHHcCCc
Q 032243           21 GAHGIIIVYDVTD-----QE--SFN----NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA--KAFADEIGIP   87 (144)
Q Consensus        21 ~~d~~i~v~d~~~-----~~--s~~----~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~--~~~~~~~~~~   87 (144)
                      ..+|+|+++|+.+     ..  .+.    .+..-+..+.....-..|+.|++||+|+.++-..-....  ....+.+|+.
T Consensus        25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~GF~ef~~~L~~~~r~q~lG~t  104 (266)
T PF14331_consen   25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLPGFDEFFSDLSEEEREQVLGFT  104 (266)
T ss_pred             CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCcccCHHHHHHhCCHHHHhCCcccc
Confidence            3699999999643     11  111    223334444444555799999999999976632111110  1112233443


Q ss_pred             EEEeecCCCCC---HHHHHHHHHHHHHHh
Q 032243           88 FMETSAKDSTN---VEQAFMAMAASIKDR  113 (144)
Q Consensus        88 ~~~~Sa~~~~~---i~~l~~~i~~~~~~~  113 (144)
                      +-.-....+..   +.+.|+.+...+...
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~  133 (266)
T PF14331_consen  105 FPYDEDADGDAWAWFDEEFDELVARLNAR  133 (266)
T ss_pred             cCCccccccchHHHHHHHHHHHHHHHHHH
Confidence            22222223333   667777766666544

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=94.67  E-value=0.41  Score=33.70  Aligned_cols=62  Identities=13%  Similarity=0.095  Sum_probs=39.1

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL   66 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl   66 (144)
                      |+|||+.  ........+..+|.+++++..+ ..++..+...+..+........+..++.|+.|.
T Consensus       119 iiD~pp~--~~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~  180 (246)
T TIGR03371       119 LIDVPRG--PSPITRQALAAADLVLVVVNAD-AACYATLHQQALALFAGSGPRIGPHFLINQFDP  180 (246)
T ss_pred             EEECCCC--chHHHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhcccccccceEEeeccCc
Confidence            6799984  3344567778899999999875 345555553222222211223457789999985

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=94.62  E-value=0.22  Score=30.70  Aligned_cols=59  Identities=17%  Similarity=0.095  Sum_probs=39.1

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCcEEEEEeC
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD-NVNKLLVGNK   63 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK   63 (144)
                      +.|||+....  .....+..+|.++++++.+ ..++..+..++..+...... ...+.+|+|+
T Consensus        47 IiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          47 VVDLGRSLDE--VSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             EEeCCCCcCH--HHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            6899876432  2345678899999999765 44566666666666554432 3466777775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=94.49  E-value=0.27  Score=38.07  Aligned_cols=81  Identities=15%  Similarity=0.048  Sum_probs=44.5

Q ss_pred             ceeccchhHHhh-h---hhhh--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243            2 QWDTAGQERFRT-I---TSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE   75 (144)
Q Consensus         2 i~Dt~G~~~~~~-~---~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~   75 (144)
                      |+||+|...... +   ...+  ..+.|.++||+|++--.  + .......+...   -.+.-+|+||.|-....    =
T Consensus       187 iIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq--~-a~~~a~~F~~~---~~~~g~IlTKlD~~arg----G  256 (429)
T TIGR01425       187 IVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ--A-AEAQAKAFKDS---VDVGSVIITKLDGHAKG----G  256 (429)
T ss_pred             EEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccCh--h-HHHHHHHHHhc---cCCcEEEEECccCCCCc----c
Confidence            789999643221 1   1111  23568899999976321  1 11222333222   24678899999963221    1


Q ss_pred             HHHHHHHHcCCcEEEee
Q 032243           76 TAKAFADEIGIPFMETS   92 (144)
Q Consensus        76 ~~~~~~~~~~~~~~~~S   92 (144)
                      .+.......+.|+..++
T Consensus       257 ~aLs~~~~t~~PI~fig  273 (429)
T TIGR01425       257 GALSAVAATKSPIIFIG  273 (429)
T ss_pred             HHhhhHHHHCCCeEEEc
Confidence            23445556677776666

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=94.47  E-value=0.56  Score=31.13  Aligned_cols=81  Identities=9%  Similarity=0.051  Sum_probs=48.4

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA   81 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~   81 (144)
                      |+||++.....  ....+..+|.++++++.+. .++..+..++..+....  .....+++|+.+....  ...+....+.
T Consensus        67 iiD~p~~~~~~--~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~--~~~~~~~~~~  139 (179)
T cd02036          67 LIDSPAGIERG--FITAIAPADEALLVTTPEI-SSLRDADRVKGLLEALG--IKVVGVIVNRVRPDMV--EGGDMVEDIE  139 (179)
T ss_pred             EEECCCCCcHH--HHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHcC--CceEEEEEeCCccccc--chhhHHHHHH
Confidence            68998764332  3445678999999998764 34555555555554422  2456788999986322  1122234455


Q ss_pred             HHcCCcEE
Q 032243           82 DEIGIPFM   89 (144)
Q Consensus        82 ~~~~~~~~   89 (144)
                      +.++.+++
T Consensus       140 ~~~~~~v~  147 (179)
T cd02036         140 EILGVPLL  147 (179)
T ss_pred             HHhCCCEE
Confidence            55666654

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=94.46  E-value=1.3  Score=35.56  Aligned_cols=98  Identities=12%  Similarity=0.196  Sum_probs=58.1

Q ss_pred             hHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHH-HHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--
Q 032243            9 ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG--   85 (144)
Q Consensus         9 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~-~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--   85 (144)
                      +..-+|..+|+.+.+++|+++--.+   .+.-......+ ....+.....|+|++|.|+...+..++..+.++.+..-  
T Consensus       436 d~I~~msKayM~NPNAIILCIQDGS---VDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFP  512 (980)
T KOG0447|consen  436 ETIFSISKAYMQNPNAIILCIQDGS---VDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFP  512 (980)
T ss_pred             HHHHHHHHHHhcCCCeEEEEeccCC---cchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccc
Confidence            3456678999999999999984222   11111222223 33344567889999999997665666666666654321  


Q ss_pred             ---CcEEEeecCCC---CCHHHHHHHHHHH
Q 032243           86 ---IPFMETSAKDS---TNVEQAFMAMAAS  109 (144)
Q Consensus        86 ---~~~~~~Sa~~~---~~i~~l~~~i~~~  109 (144)
                         +.||.+-.-.|   +.|+++.+.=.+.
T Consensus       513 MKALGYfaVVTGrGnssdSIdaIR~YEE~F  542 (980)
T KOG0447|consen  513 MKALGYFAVVTGKGNSSESIEAIREYEEEF  542 (980)
T ss_pred             hhhcceeEEEecCCCcchhHHHHHHHHHHH
Confidence               24555543333   4566665543333

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=94.37  E-value=0.33  Score=36.22  Aligned_cols=95  Identities=16%  Similarity=0.212  Sum_probs=52.4

Q ss_pred             ceeccchhHHhhhhhhhhc--------CCCEEEEEEeCCCHHHHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243            2 QWDTAGQERFRTITSSYYR--------GAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      +++|.|.....+.+..++.        ..|+++-|+|+..-..... +..........     -=+|++||.|+.+... 
T Consensus        89 vIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~-----AD~ivlNK~Dlv~~~~-  162 (323)
T COG0523          89 VIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF-----ADVIVLNKTDLVDAEE-  162 (323)
T ss_pred             EEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh-----CcEEEEecccCCCHHH-
Confidence            3456665444343333332        3688999999876433222 22322222222     2388999999976543 


Q ss_pred             CHHHHHHHHHHcC--CcEEEeecCCCCCHHHHHH
Q 032243           73 SYETAKAFADEIG--IPFMETSAKDSTNVEQAFM  104 (144)
Q Consensus        73 ~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~  104 (144)
                       ........+.++  .+++.++. .+.+..+++.
T Consensus       163 -l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~  194 (323)
T COG0523         163 -LEALEARLRKLNPRARIIETSY-GDVDLAELLD  194 (323)
T ss_pred             -HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence             334444555544  58888887 3445444443

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=94.19  E-value=0.044  Score=41.82  Aligned_cols=103  Identities=17%  Similarity=0.135  Sum_probs=61.0

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCC---HHHHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCcc------
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWL-NEIDRYASDNVNKLLVGNKCDLTANKV------   71 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~-~~~~~~~~~~~p~ilv~nK~Dl~~~~~------   71 (144)
                      +.|++|+..|-+.+-.-...+|..++|+++.-   +..|+.--+-- ..+......-...|+++||.|-..-+-      
T Consensus       161 iLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~eRy~  240 (501)
T KOG0459|consen  161 ILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYE  240 (501)
T ss_pred             eeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcchhhHH
Confidence            57899998888766555678999999998732   12232210100 111111112356788999999743211      


Q ss_pred             cCHHHHHHHHHHcC------CcEEEeecCCCCCHHHHHH
Q 032243           72 VSYETAKAFADEIG------IPFMETSAKDSTNVEQAFM  104 (144)
Q Consensus        72 ~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~~  104 (144)
                      -.......+....+      ..++++|..+|.++++...
T Consensus       241 E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  241 ECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             HHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            11223334444443      3689999999999987654

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.03  E-value=0.072  Score=38.28  Aligned_cols=49  Identities=20%  Similarity=0.442  Sum_probs=36.9

Q ss_pred             hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243           19 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus        19 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   69 (144)
                      .+..-++++|||++....+..++.|+.+-....-  -..+.|+||.|-.++
T Consensus        76 a~pl~a~vmvfdlse~s~l~alqdwl~htdinsf--dillcignkvdrvph  124 (418)
T KOG4273|consen   76 AEPLQAFVMVFDLSEKSGLDALQDWLPHTDINSF--DILLCIGNKVDRVPH  124 (418)
T ss_pred             ccceeeEEEEEeccchhhhHHHHhhccccccccc--hhheecccccccccc
Confidence            3456789999999999999999999887644331  234677999997543

>cd03112 CobW_like The function of this protein family is unkown

Probab=93.99  E-value=0.2  Score=33.16  Aligned_cols=59  Identities=17%  Similarity=0.193  Sum_probs=32.3

Q ss_pred             ceeccchhHHhhhhhh--------hhcCCCEEEEEEeCCCHHHHH-HHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243            2 QWDTAGQERFRTITSS--------YYRGAHGIIIVYDVTDQESFN-NVKQWLNEIDRYASDNVNKLLVGNKCDL   66 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl   66 (144)
                      |.||+|-.+-......        .....|.+++++|......+. ....+...+. .     -=++|+||+|+
T Consensus        91 ~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~-~-----ad~ivlnk~dl  158 (158)
T cd03112          91 VIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIA-F-----ADRILLNKTDL  158 (158)
T ss_pred             EEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHH-H-----CCEEEEecccC
Confidence            5788886433332222        123589999999976543222 1111222221 1     23678999996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK13505 formate--tetrahydrofolate ligase; Provisional

Probab=93.98  E-value=0.81  Score=36.47  Aligned_cols=56  Identities=16%  Similarity=0.155  Sum_probs=42.9

Q ss_pred             CCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEee--cCCCCCHHHHHHHHHHHHH
Q 032243           54 NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETS--AKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        54 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~l~~~i~~~~~  111 (144)
                      .+|++|++||+|...+.+  .+.+.+++++.++++..+.  ++-|.|--++-+.+.+.+.
T Consensus       372 GvPvVVAINKFd~DTe~E--i~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~  429 (557)
T PRK13505        372 GVPVVVAINKFVTDTDAE--IAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIE  429 (557)
T ss_pred             CCCEEEEEeCCCCCCHHH--HHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHh
Confidence            699999999999744322  5667889999999876444  4556788888888888775

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=93.86  E-value=0.02  Score=43.92  Aligned_cols=63  Identities=19%  Similarity=0.157  Sum_probs=46.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      +++||||+-.|+--.+.+++-.|+++.|||.+---.-..+..    +++....++|-..++||+|..
T Consensus       105 nlidtpghvdf~leverclrvldgavav~dasagve~qtltv----wrqadk~~ip~~~finkmdk~  167 (753)
T KOG0464|consen  105 NLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTV----WRQADKFKIPAHCFINKMDKL  167 (753)
T ss_pred             eeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeee----ehhccccCCchhhhhhhhhhh
Confidence            478999999999888999999999999999864211111212    233334478999999999974

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=93.67  E-value=0.5  Score=36.72  Aligned_cols=82  Identities=20%  Similarity=0.106  Sum_probs=45.9

Q ss_pred             ceeccchhHHhhh----hhhh--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243            2 QWDTAGQERFRTI----TSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE   75 (144)
Q Consensus         2 i~Dt~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~   75 (144)
                      |+||+|.......    +..+  +..+|.+++|+|++...  + .......+....   ...-+|+||.|-...    .=
T Consensus       180 IIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--~-av~~a~~F~~~l---~i~gvIlTKlD~~a~----~G  249 (437)
T PRK00771        180 IVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--Q-AKNQAKAFHEAV---GIGGIIITKLDGTAK----GG  249 (437)
T ss_pred             EEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH--H-HHHHHHHHHhcC---CCCEEEEecccCCCc----cc
Confidence            6899997543211    1111  33689999999986532  2 212222222211   234678999996322    12


Q ss_pred             HHHHHHHHcCCcEEEeec
Q 032243           76 TAKAFADEIGIPFMETSA   93 (144)
Q Consensus        76 ~~~~~~~~~~~~~~~~Sa   93 (144)
                      .+..+....+.|+..++.
T Consensus       250 ~~ls~~~~~~~Pi~fig~  267 (437)
T PRK00771        250 GALSAVAETGAPIKFIGT  267 (437)
T ss_pred             HHHHHHHHHCcCEEEEec
Confidence            345566677888777763

>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]

Probab=93.14  E-value=0.86  Score=34.49  Aligned_cols=63  Identities=24%  Similarity=0.352  Sum_probs=50.0

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      ++|.|  .-+.+..+.++..+|-+++|++.+- .+....++++..++.......+..+++||.+..
T Consensus       222 V~Dlp--~~~~~~t~~vL~~Sd~iviv~e~sl-~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~  284 (366)
T COG4963         222 VVDLP--NIWTDWTRQVLSGSDEIVIVAEPSL-ASLRNAKELLDELKRLRPNDPKPILVLNRVGVP  284 (366)
T ss_pred             EEcCC--CccchHHHHHHhcCCeEEEEecccH-HHHHHHHHHHHHHHHhCCCCCCceEEeeecCCC
Confidence            56766  3345556888999999999999764 467777888888888877778889999999864

>TIGR00959 ffh signal recognition particle protein

Probab=93.11  E-value=1  Score=34.98  Aligned_cols=82  Identities=17%  Similarity=0.091  Sum_probs=46.3

Q ss_pred             ceeccchhHHhh----hhhhh--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243            2 QWDTAGQERFRT----ITSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE   75 (144)
Q Consensus         2 i~Dt~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~   75 (144)
                      |+||+|......    ....+  .-..|.++||+|....   .+...+...+....   ...=+|.||.|-....    -
T Consensus       187 IIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v---~i~giIlTKlD~~~~~----G  256 (428)
T TIGR00959       187 IVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL---GLTGVVLTKLDGDARG----G  256 (428)
T ss_pred             EEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC---CCCEEEEeCccCcccc----c
Confidence            689999532211    11111  2357899999998643   23333333333222   2346779999953221    1


Q ss_pred             HHHHHHHHcCCcEEEeec
Q 032243           76 TAKAFADEIGIPFMETSA   93 (144)
Q Consensus        76 ~~~~~~~~~~~~~~~~Sa   93 (144)
                      .+..+....++|+..++.
T Consensus       257 ~~lsi~~~~~~PI~fi~~  274 (428)
T TIGR00959       257 AALSVRSVTGKPIKFIGV  274 (428)
T ss_pred             HHHHHHHHHCcCEEEEeC
Confidence            256677778888777764

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=93.11  E-value=1.6  Score=34.89  Aligned_cols=84  Identities=17%  Similarity=0.175  Sum_probs=49.3

Q ss_pred             ceeccchhHHhhh-------hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH
Q 032243            2 QWDTAGQERFRTI-------TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY   74 (144)
Q Consensus         2 i~Dt~G~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~   74 (144)
                      |+||+|.......       +...  .....++|++.+.  ++.++...+..+...    .+.-+|+||.|...    ..
T Consensus       433 LIDTaG~s~~D~~l~eeL~~L~aa--~~~a~lLVLpAts--s~~Dl~eii~~f~~~----~~~gvILTKlDEt~----~l  500 (559)
T PRK12727        433 LIDTAGMGQRDRALAAQLNWLRAA--RQVTSLLVLPANA--HFSDLDEVVRRFAHA----KPQGVVLTKLDETG----RF  500 (559)
T ss_pred             EecCCCcchhhHHHHHHHHHHHHh--hcCCcEEEEECCC--ChhHHHHHHHHHHhh----CCeEEEEecCcCcc----ch
Confidence            7899996432211       1111  1245677777664  344444444444332    46789999999632    23


Q ss_pred             HHHHHHHHHcCCcEEEeecCCCCCH
Q 032243           75 ETAKAFADEIGIPFMETSAKDSTNV   99 (144)
Q Consensus        75 ~~~~~~~~~~~~~~~~~Sa~~~~~i   99 (144)
                      -.+..+....++++..++  +|..+
T Consensus       501 G~aLsv~~~~~LPI~yvt--~GQ~V  523 (559)
T PRK12727        501 GSALSVVVDHQMPITWVT--DGQRV  523 (559)
T ss_pred             hHHHHHHHHhCCCEEEEe--CCCCc
Confidence            455667777888888887  55555

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=92.99  E-value=1  Score=37.04  Aligned_cols=67  Identities=13%  Similarity=0.069  Sum_probs=38.7

Q ss_pred             ceeccchhHH----------hhhhhhhhc--CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCC
Q 032243            2 QWDTAGQERF----------RTITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD--NVNKLLVGNKCDLT   67 (144)
Q Consensus         2 i~Dt~G~~~~----------~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~   67 (144)
                      ++||||....          ......++.  ..|++|+|+.++.......-..++..+......  -..+||++|..|..
T Consensus       170 VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~l  249 (763)
T TIGR00993       170 VIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASA  249 (763)
T ss_pred             EEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccC
Confidence            7899996532          111233444  489999999876432211112344444333322  24679999999986


Q ss_pred             C
Q 032243           68 A   68 (144)
Q Consensus        68 ~   68 (144)
                      +
T Consensus       250 p  250 (763)
T TIGR00993       250 P  250 (763)
T ss_pred             C
Confidence            5

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG3929 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.78  E-value=0.34  Score=35.14  Aligned_cols=36  Identities=17%  Similarity=0.350  Sum_probs=21.7

Q ss_pred             CceeccchhHHhhhhhhhhc----CCCEEEEEEeCCCHHH
Q 032243            1 MQWDTAGQERFRTITSSYYR----GAHGIIIVYDVTDQES   36 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~----~~d~~i~v~d~~~~~s   36 (144)
                      ++|+.||...-..+..-=+.    ..=.+|+|+|++.++.
T Consensus        95 N~WELGgg~~~~~LLsVPit~~~l~~~slIL~LDls~p~~  134 (363)
T KOG3929|consen   95 NFWELGGGTSLLDLLSVPITGDTLRTFSLILVLDLSKPND  134 (363)
T ss_pred             HHHHhcCCccHHHHhcCcccccchhhhhheeeeecCChHH
Confidence            47888887654443221111    1346788999998763

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=92.55  E-value=1.7  Score=28.91  Aligned_cols=79  Identities=15%  Similarity=0.079  Sum_probs=42.6

Q ss_pred             ceeccchhH----Hhhhhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243            2 QWDTAGQER----FRTITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE   75 (144)
Q Consensus         2 i~Dt~G~~~----~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~   75 (144)
                      |.||+|...    .......+.  ...+.+++|+|.....  + .......+....  . ..-+|.||.|....    .-
T Consensus        87 iiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~--~-~~~~~~~~~~~~--~-~~~viltk~D~~~~----~g  156 (173)
T cd03115          87 IVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ--D-AVNQAKAFNEAL--G-ITGVILTKLDGDAR----GG  156 (173)
T ss_pred             EEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh--H-HHHHHHHHHhhC--C-CCEEEEECCcCCCC----cc
Confidence            679998632    222222222  3489999999986432  2 222333333222  1 35677899997432    22


Q ss_pred             HHHHHHHHcCCcEEE
Q 032243           76 TAKAFADEIGIPFME   90 (144)
Q Consensus        76 ~~~~~~~~~~~~~~~   90 (144)
                      .....+...++|+..
T Consensus       157 ~~~~~~~~~~~p~~~  171 (173)
T cd03115         157 AALSIRAVTGKPIKF  171 (173)
T ss_pred             hhhhhHHHHCcCeEe
Confidence            233366666776544

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=91.95  E-value=1.1  Score=33.27  Aligned_cols=88  Identities=16%  Similarity=0.104  Sum_probs=46.6

Q ss_pred             hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecC
Q 032243           15 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAK   94 (144)
Q Consensus        15 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~   94 (144)
                      ....+...|.+|=|-|+.-|-|-..  ..   +..... ..|-++|.||.||.+..+. ..-++.+.......++..++.
T Consensus        40 i~~~l~~~D~iiEvrDaRiPLssrn--~~---~~~~~~-~k~riiVlNK~DLad~~~~-k~~iq~~~~~~~~~~~~~~c~  112 (335)
T KOG2485|consen   40 IQNRLPLVDCIIEVRDARIPLSSRN--EL---FQDFLP-PKPRIIVLNKMDLADPKEQ-KKIIQYLEWQNLESYIKLDCN  112 (335)
T ss_pred             HHhhcccccEEEEeeccccCCcccc--HH---HHHhcC-CCceEEEEecccccCchhh-hHHHHHHHhhcccchhhhhhh
Confidence            4455677999999999765532221  11   112222 4788999999999764332 333333333333344444443


Q ss_pred             CCCC--HHHHHHHHHHH
Q 032243           95 DSTN--VEQAFMAMAAS  109 (144)
Q Consensus        95 ~~~~--i~~l~~~i~~~  109 (144)
                      ...+  +..++..+...
T Consensus       113 ~~~~~~v~~l~~il~~~  129 (335)
T KOG2485|consen  113 KDCNKQVSPLLKILTIL  129 (335)
T ss_pred             hhhhhccccHHHHHHHH
Confidence            3333  44554443333

>cd03114 ArgK-like The function of this protein family is unkown

Probab=91.95  E-value=0.52  Score=30.93  Aligned_cols=53  Identities=17%  Similarity=0.186  Sum_probs=32.4

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD   65 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D   65 (144)
                      |.||+|.....   ..++..+|.++++...+--+.+--+   ...+..     .-=++++||+|
T Consensus        96 iIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~D~y~~~---k~~~~~-----~~~~~~~~k~~  148 (148)
T cd03114          96 IVETVGVGQSE---VDIASMADTTVVVMAPGAGDDIQAI---KAGIME-----IADIVVVNKAD  148 (148)
T ss_pred             EEECCccChhh---hhHHHhCCEEEEEECCCchhHHHHh---hhhHhh-----hcCEEEEeCCC
Confidence            68998865322   3578889999999987633322211   111111     23488899997

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK10867 signal recognition particle protein; Provisional

Probab=91.83  E-value=2.2  Score=33.20  Aligned_cols=82  Identities=16%  Similarity=0.078  Sum_probs=44.7

Q ss_pred             ceeccchhHHhh----hhhhh--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243            2 QWDTAGQERFRT----ITSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE   75 (144)
Q Consensus         2 i~Dt~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~   75 (144)
                      |+||+|......    ....+  +-..+.+++|+|....   .+.......+....   ...-+|+||.|-....    =
T Consensus       188 IIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~---~i~giIlTKlD~~~rg----G  257 (433)
T PRK10867        188 IVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL---GLTGVILTKLDGDARG----G  257 (433)
T ss_pred             EEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC---CCCEEEEeCccCcccc----c
Confidence            689999542211    11111  1256788999997642   22223333333221   2346778999953221    1


Q ss_pred             HHHHHHHHcCCcEEEeec
Q 032243           76 TAKAFADEIGIPFMETSA   93 (144)
Q Consensus        76 ~~~~~~~~~~~~~~~~Sa   93 (144)
                      .+.......+.|+..++.
T Consensus       258 ~alsi~~~~~~PI~fig~  275 (433)
T PRK10867        258 AALSIRAVTGKPIKFIGT  275 (433)
T ss_pred             HHHHHHHHHCcCEEEEeC
Confidence            255666777888777764

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=91.73  E-value=0.32  Score=32.77  Aligned_cols=63  Identities=14%  Similarity=0.051  Sum_probs=43.7

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      |.|||+.....  ....+..+|.+|++++.+. .+...+..++..+.........+.+|.|+.+..
T Consensus        99 iiD~~~~~~~~--~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~  161 (195)
T PF01656_consen   99 IIDTPPGLSDP--VRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLGKKLKIIGVVINRVDPG  161 (195)
T ss_dssp             EEEECSSSSHH--HHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSC
T ss_pred             eecccccccHH--HHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhccccceEEEEEeeeCCC
Confidence            67888754333  4566789999999999865 446667777766665542213568889999864

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.89  E-value=2.2  Score=37.24  Aligned_cols=50  Identities=26%  Similarity=0.345  Sum_probs=33.2

Q ss_pred             cCCCEEEEEEeCCCH----HHH-----HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243           20 RGAHGIIIVYDVTDQ----ESF-----NNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus        20 ~~~d~~i~v~d~~~~----~s~-----~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   69 (144)
                      +..++||+.+|+.+-    ...     ..+..=+.++.....-..|++|++||.|+..+
T Consensus       213 ~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G  271 (1188)
T COG3523         213 RPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG  271 (1188)
T ss_pred             CCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence            347999999997541    111     12233345555555557999999999999765

>TIGR01968 minD_bact septum site-determining protein MinD

Probab=90.79  E-value=2.6  Score=29.75  Aligned_cols=60  Identities=10%  Similarity=-0.022  Sum_probs=39.5

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL   66 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl   66 (144)
                      |+|+|+....  .....+..+|.+++++..+ ..++..+...+..+....  ..++.+++|+.+.
T Consensus       116 iiD~p~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~iviN~~~~  175 (261)
T TIGR01968       116 IIDCPAGIES--GFRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEAKG--IEKIHLIVNRLRP  175 (261)
T ss_pred             EEeCCCCcCH--HHHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHHcC--CCceEEEEeCcCc
Confidence            6899875422  2345567899999999875 445666666555554433  2367788999874

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=90.70  E-value=1.7  Score=33.41  Aligned_cols=87  Identities=17%  Similarity=0.174  Sum_probs=48.6

Q ss_pred             ceeccchhHH----hhhhhhhhc--CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243            2 QWDTAGQERF----RTITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE   75 (144)
Q Consensus         2 i~Dt~G~~~~----~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~   75 (144)
                      |+||+|....    ...+..+..  ..+.+++|++...  ...++...+..+   . .-.+--+|+||.|-...    .=
T Consensus       290 LIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f---~-~l~i~glI~TKLDET~~----~G  359 (407)
T PRK12726        290 LIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKL---A-EIPIDGFIITKMDETTR----IG  359 (407)
T ss_pred             EEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhc---C-cCCCCEEEEEcccCCCC----cc
Confidence            6899997322    222222332  3467777877642  223333333332   2 12345788999996322    23


Q ss_pred             HHHHHHHHcCCcEEEeecCCCCCHH
Q 032243           76 TAKAFADEIGIPFMETSAKDSTNVE  100 (144)
Q Consensus        76 ~~~~~~~~~~~~~~~~Sa~~~~~i~  100 (144)
                      .+..+....++|+..++  +|+++.
T Consensus       360 ~~Lsv~~~tglPIsylt--~GQ~Vp  382 (407)
T PRK12726        360 DLYTVMQETNLPVLYMT--DGQNIT  382 (407)
T ss_pred             HHHHHHHHHCCCEEEEe--cCCCCC
Confidence            45567778888888887  445544

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=90.37  E-value=3.8  Score=31.84  Aligned_cols=90  Identities=18%  Similarity=0.220  Sum_probs=52.1

Q ss_pred             ceeccchhHHh----hhhhhhhc---CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH
Q 032243            2 QWDTAGQERFR----TITSSYYR---GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY   74 (144)
Q Consensus         2 i~Dt~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~   74 (144)
                      |+||+|.....    .....++.   .-+-+.+|++.+-.  ..++...+..+...    .+--+|+||.|-...    .
T Consensus       304 lIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~----~~~~vI~TKlDet~~----~  373 (424)
T PRK05703        304 LIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL----PLDGLIFTKLDETSS----L  373 (424)
T ss_pred             EEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC----CCCEEEEeccccccc----c
Confidence            68999964322    22333333   33567788887643  23344434444221    233688999996322    3


Q ss_pred             HHHHHHHHHcCCcEEEeecCCCCCH-HHHH
Q 032243           75 ETAKAFADEIGIPFMETSAKDSTNV-EQAF  103 (144)
Q Consensus        75 ~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~  103 (144)
                      -.+..+....++|+..++  +|.++ +++.
T Consensus       374 G~i~~~~~~~~lPv~yit--~Gq~VpdDl~  401 (424)
T PRK05703        374 GSILSLLIESGLPISYLT--NGQRVPDDIK  401 (424)
T ss_pred             cHHHHHHHHHCCCEEEEe--CCCCChhhhh
Confidence            356677888899988888  55664 4443

>CHL00175 minD septum-site determining protein; Validated

Probab=89.92  E-value=3.1  Score=30.05  Aligned_cols=60  Identities=12%  Similarity=-0.005  Sum_probs=38.6

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL   66 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl   66 (144)
                      |+|||+...  ......+..+|.+++|++.+ ..++..+..++..+....  .....+++|+.+.
T Consensus       131 IiDtpp~~~--~~~~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~~~--~~~~~lvvN~~~~  190 (281)
T CHL00175        131 LIDCPAGID--VGFINAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEANG--IYNVKLLVNRVRP  190 (281)
T ss_pred             EEeCCCCCC--HHHHHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHHcC--CCceEEEEeccCh
Confidence            689987642  23345567799999998765 455666666555555433  2345678899874

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=89.68  E-value=0.3  Score=38.66  Aligned_cols=60  Identities=23%  Similarity=0.323  Sum_probs=41.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHH--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCDL   66 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl   66 (144)
                      +++|.||+-.|.+-....++=.|+++.|+|.-+--  .-+.+   +   ++.....+.-+++.||.|-
T Consensus       101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETV---L---rQA~~ERIkPvlv~NK~DR  162 (842)
T KOG0469|consen  101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETV---L---RQAIAERIKPVLVMNKMDR  162 (842)
T ss_pred             EeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHH---H---HHHHHhhccceEEeehhhH
Confidence            47899999999998888889999999999975421  11111   1   1111113455788999994

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=89.26  E-value=4  Score=29.68  Aligned_cols=86  Identities=15%  Similarity=0.113  Sum_probs=49.4

Q ss_pred             ceeccchhH-----Hhhhhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH
Q 032243            2 QWDTAGQER-----FRTITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY   74 (144)
Q Consensus         2 i~Dt~G~~~-----~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~   74 (144)
                      |+||+|...     ...+ ..++  ...+-++||+|++..  .+++..++..+..    -.+-=+|+||.|-...    .
T Consensus       159 iIDt~Gr~~~~~~~l~el-~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~----~~~~~~I~TKlDet~~----~  227 (270)
T PRK06731        159 LIDTAGKNYRASETVEEM-IETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD----IHIDGIVFTKFDETAS----S  227 (270)
T ss_pred             EEECCCCCcCCHHHHHHH-HHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC----CCCCEEEEEeecCCCC----c
Confidence            689999642     1222 2222  245678999997642  2333344444432    2345788999996432    2


Q ss_pred             HHHHHHHHHcCCcEEEeecCCCCCHH
Q 032243           75 ETAKAFADEIGIPFMETSAKDSTNVE  100 (144)
Q Consensus        75 ~~~~~~~~~~~~~~~~~Sa~~~~~i~  100 (144)
                      =.+..+....+.|+..++  +|+++-
T Consensus       228 G~~l~~~~~~~~Pi~~it--~Gq~vp  251 (270)
T PRK06731        228 GELLKIPAVSSAPIVLMT--DGQDVK  251 (270)
T ss_pred             cHHHHHHHHHCcCEEEEe--CCCCCC
Confidence            244566667788887777  444443

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=88.92  E-value=9.3  Score=32.08  Aligned_cols=94  Identities=12%  Similarity=0.054  Sum_probs=52.8

Q ss_pred             ceeccchhH----Hhhhhhhh--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243            2 QWDTAGQER----FRTITSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE   75 (144)
Q Consensus         2 i~Dt~G~~~----~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~   75 (144)
                      |+||+|...    ........  ....+-.++|+|.+..  .+++.+....+..... ..+-=+|+||.|-...    .=
T Consensus       268 LIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~-~~i~glIlTKLDEt~~----~G  340 (767)
T PRK14723        268 LIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAG-EDVDGCIITKLDEATH----LG  340 (767)
T ss_pred             EEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhccc-CCCCEEEEeccCCCCC----cc
Confidence            789999422    11111111  2245678899998743  2333333333332211 0234678999996432    22


Q ss_pred             HHHHHHHHcCCcEEEeecCCCCCH-HHHHH
Q 032243           76 TAKAFADEIGIPFMETSAKDSTNV-EQAFM  104 (144)
Q Consensus        76 ~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~~  104 (144)
                      .+..+....++|+..++  +|+++ +++..
T Consensus       341 ~iL~i~~~~~lPI~yit--~GQ~VPdDL~~  368 (767)
T PRK14723        341 PALDTVIRHRLPVHYVS--TGQKVPEHLEL  368 (767)
T ss_pred             HHHHHHHHHCCCeEEEe--cCCCChhhccc
Confidence            44566777889988888  66777 55544

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=88.70  E-value=2.6  Score=25.35  Aligned_cols=41  Identities=15%  Similarity=0.174  Sum_probs=27.8

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLN   45 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~   45 (144)
                      ++|+|+....  .....+..+|.++++++.+ ..++..+..++.
T Consensus        44 iiD~p~~~~~--~~~~~l~~ad~viv~~~~~-~~s~~~~~~~~~   84 (104)
T cd02042          44 IIDTPPSLGL--LTRNALAAADLVLIPVQPS-PLDLDGLEKLLE   84 (104)
T ss_pred             EEeCcCCCCH--HHHHHHHHCCEEEEeccCC-HHHHHHHHHHHH
Confidence            6899886432  2336677899999999874 445666666555

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases

Probab=88.43  E-value=5.9  Score=26.74  Aligned_cols=86  Identities=20%  Similarity=0.301  Sum_probs=57.8

Q ss_pred             hcCCCEEEEEEeCCCH-------HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEe
Q 032243           19 YRGAHGIIIVYDVTDQ-------ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMET   91 (144)
Q Consensus        19 ~~~~d~~i~v~d~~~~-------~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~   91 (144)
                      ++....=.+++|.++-       .-..++..|+..++..... ..+++|-|-.=..+  .....++..+.+.++++++.-
T Consensus        36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~-~~v~IvSNsaGs~~--d~~~~~a~~~~~~lgIpvl~h  112 (168)
T PF09419_consen   36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGK-DRVLIVSNSAGSSD--DPDGERAEALEKALGIPVLRH  112 (168)
T ss_pred             hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCC-CeEEEEECCCCccc--CccHHHHHHHHHhhCCcEEEe
Confidence            4555555667776541       2235678899988876532 24788888753322  234678888889999999999


Q ss_pred             ecCCCCCHHHHHHHHH
Q 032243           92 SAKDSTNVEQAFMAMA  107 (144)
Q Consensus        92 Sa~~~~~i~~l~~~i~  107 (144)
                      +++...+..+++..+.
T Consensus       113 ~~kKP~~~~~i~~~~~  128 (168)
T PF09419_consen  113 RAKKPGCFREILKYFK  128 (168)
T ss_pred             CCCCCccHHHHHHHHh
Confidence            8888877776666553

All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=88.41  E-value=1.3  Score=29.72  Aligned_cols=32  Identities=19%  Similarity=0.219  Sum_probs=21.9

Q ss_pred             HHHHHHHHcCCcEEEeecCCCCCHHHHHHHHH
Q 032243           76 TAKAFADEIGIPFMETSAKDSTNVEQAFMAMA  107 (144)
Q Consensus        76 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~  107 (144)
                      +.....+.++++++.+|++++.|++++.+.+.
T Consensus         3 ~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~   34 (161)
T PF03193_consen    3 ELLEQYEKLGYPVFFISAKTGEGIEELKELLK   34 (161)
T ss_dssp             HHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHT
T ss_pred             HHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhc
Confidence            34556667777888888888888887777554

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=88.14  E-value=7  Score=28.00  Aligned_cols=78  Identities=17%  Similarity=0.157  Sum_probs=42.6

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcE-EEEEeCCCCCCCcccCHHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNK-LLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~-ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      |+||+|...... ....+.-+|.+|+++.. +..++..+...+..+.... ....++ -++.|+.+.       ......
T Consensus       122 iIDt~g~~~~~~-~~~~l~~AD~viip~~~-~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-------~~~~~~  192 (270)
T PRK13185        122 LFDVLGDVVCGG-FAAPLQYADYALIVTAN-DFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-------TDLIDK  192 (270)
T ss_pred             EEecCCCcccCc-ccchhhhCcEEEEEecC-chhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh-------HHHHHH
Confidence            578876532221 22335678999998865 4455555555555443221 224554 478899763       233344


Q ss_pred             HHHHcCCcE
Q 032243           80 FADEIGIPF   88 (144)
Q Consensus        80 ~~~~~~~~~   88 (144)
                      +.+..+.++
T Consensus       193 ~~~~~g~~v  201 (270)
T PRK13185        193 FNEAVGLKV  201 (270)
T ss_pred             HHHHcCCCE
Confidence            555555443

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=88.05  E-value=5.1  Score=30.78  Aligned_cols=91  Identities=14%  Similarity=0.101  Sum_probs=52.1

Q ss_pred             ceeccchhHHhh----hhhhhhcC---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH
Q 032243            2 QWDTAGQERFRT----ITSSYYRG---AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY   74 (144)
Q Consensus         2 i~Dt~G~~~~~~----~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~   74 (144)
                      |.||+|....+.    -...++..   .+-.++|+|++..  .+++...+..+...    .+-=+|+||.|-...    .
T Consensus       259 LIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~----~~~~~I~TKlDet~~----~  328 (388)
T PRK12723        259 LVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF----SYKTVIFTKLDETTC----V  328 (388)
T ss_pred             EEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC----CCCEEEEEeccCCCc----c
Confidence            689999643221    12233332   2368899998764  34444433333211    245788999996322    2


Q ss_pred             HHHHHHHHHcCCcEEEeecCCCCCH-HHHHH
Q 032243           75 ETAKAFADEIGIPFMETSAKDSTNV-EQAFM  104 (144)
Q Consensus        75 ~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~~  104 (144)
                      =.+..+....++|+..++  +|+++ +++..
T Consensus       329 G~~l~~~~~~~~Pi~yit--~Gq~vPeDl~~  357 (388)
T PRK12723        329 GNLISLIYEMRKEVSYVT--DGQIVPHNISI  357 (388)
T ss_pred             hHHHHHHHHHCCCEEEEe--CCCCChhhhhh
Confidence            344566777788887777  56666 44433

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=87.95  E-value=6.2  Score=27.91  Aligned_cols=61  Identities=8%  Similarity=0.063  Sum_probs=38.7

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHH---hcCCCCcEEEEEeCCC
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR---YASDNVNKLLVGNKCD   65 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~p~ilv~nK~D   65 (144)
                      |+||||...  ......+..+|.+|+.+..+. .++......+..+..   ......+..++.|..+
T Consensus        88 iID~pp~~~--~~~~~al~~aD~vliP~~ps~-~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~  151 (231)
T PRK13849         88 LADTHGGSS--ELNNTIIASSNLLLIPTMLTP-LDIDEALSTYRYVIELLLSENLAIPTAILRQRVP  151 (231)
T ss_pred             EEeCCCCcc--HHHHHHHHHCCEEEEeccCcH-HHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence            789999653  344566778999998887643 334444444333322   2233577889999986

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=87.48  E-value=4.6  Score=31.98  Aligned_cols=91  Identities=15%  Similarity=0.109  Sum_probs=50.5

Q ss_pred             ceeccchhHHhh---hhhhhhcC---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243            2 QWDTAGQERFRT---ITSSYYRG---AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE   75 (144)
Q Consensus         2 i~Dt~G~~~~~~---~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~   75 (144)
                      ++||+|......   .....+..   ..-.++|+|.+-.  ...+.+....+..    ....-+|+||.|-..    ..-
T Consensus       339 LIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~--~~~l~~i~~~f~~----~~~~g~IlTKlDet~----~~G  408 (484)
T PRK06995        339 LIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH--GDTLNEVVQAYRG----PGLAGCILTKLDEAA----SLG  408 (484)
T ss_pred             EeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc--HHHHHHHHHHhcc----CCCCEEEEeCCCCcc----cch
Confidence            689999432221   11111222   2336788887643  2333333333322    234567799999532    234


Q ss_pred             HHHHHHHHcCCcEEEeecCCCCCH-HHHHH
Q 032243           76 TAKAFADEIGIPFMETSAKDSTNV-EQAFM  104 (144)
Q Consensus        76 ~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~~  104 (144)
                      .+..+....++++..++  +|+++ +++..
T Consensus       409 ~~l~i~~~~~lPI~yvt--~GQ~VPeDL~~  436 (484)
T PRK06995        409 GALDVVIRYKLPLHYVS--NGQRVPEDLHL  436 (484)
T ss_pred             HHHHHHHHHCCCeEEEe--cCCCChhhhcc
Confidence            55667778889988888  66777 55544

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=87.42  E-value=6.4  Score=30.62  Aligned_cols=80  Identities=14%  Similarity=0.080  Sum_probs=46.5

Q ss_pred             ceeccchhH-----Hhhhhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH
Q 032243            2 QWDTAGQER-----FRTITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY   74 (144)
Q Consensus         2 i~Dt~G~~~-----~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~   74 (144)
                      |+||+|...     ...+ ..++  ...+.++||+|++-.  ..++..++..+...    ..-=+|+||.|-...    .
T Consensus       325 LIDTaGRs~kd~~lm~EL-~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~----~idglI~TKLDET~k----~  393 (436)
T PRK11889        325 LIDTAGKNYRASETVEEM-IETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI----HIDGIVFTKFDETAS----S  393 (436)
T ss_pred             EEeCccccCcCHHHHHHH-HHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC----CCCEEEEEcccCCCC----c
Confidence            689999733     2222 2323  235778899987532  23334444444321    244778999996432    2


Q ss_pred             HHHHHHHHHcCCcEEEee
Q 032243           75 ETAKAFADEIGIPFMETS   92 (144)
Q Consensus        75 ~~~~~~~~~~~~~~~~~S   92 (144)
                      =.+..++...++|+..++
T Consensus       394 G~iLni~~~~~lPIsyit  411 (436)
T PRK11889        394 GELLKIPAVSSAPIVLMT  411 (436)
T ss_pred             cHHHHHHHHHCcCEEEEe
Confidence            244566677788877776

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=86.86  E-value=6.9  Score=25.86  Aligned_cols=83  Identities=13%  Similarity=0.171  Sum_probs=47.7

Q ss_pred             ceeccchhHHhhhhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----ccc-C
Q 032243            2 QWDTAGQERFRTITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN-----KVV-S   73 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-----~~~-~   73 (144)
                      |.|||+...  ......+  ..+|.++++...+ ..++..+..++..+....  ....-++.|+.+...+     ... .
T Consensus        72 IiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~~--~~~~gvv~N~~~~~~~~~~~~~~~~~  146 (169)
T cd02037          72 VIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKVN--IPILGVVENMSYFVCPHCGKKIYIFG  146 (169)
T ss_pred             EEeCCCCCc--HHHHHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhcC--CCeEEEEEcCCcccCCCCCCcccccC
Confidence            678887532  1112222  5789999999765 456777777777776653  2334678999874211     111 1


Q ss_pred             HHHHHHHHHHcCCcEE
Q 032243           74 YETAKAFADEIGIPFM   89 (144)
Q Consensus        74 ~~~~~~~~~~~~~~~~   89 (144)
                      ......+.+..+.+++
T Consensus       147 ~~~~~~~~~~~~~~~~  162 (169)
T cd02037         147 KGGGEKLAEELGVPLL  162 (169)
T ss_pred             CccHHHHHHHcCCCEE
Confidence            2344556666665443

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=86.81  E-value=4.2  Score=30.30  Aligned_cols=92  Identities=13%  Similarity=0.178  Sum_probs=46.9

Q ss_pred             ceeccchhHHhhhhhhhhc--------CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC
Q 032243            2 QWDTAGQERFRTITSSYYR--------GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS   73 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~   73 (144)
                      +.+|.|.....++...++.        ..++++.|+|..+.....+-....  ..+..   .-=+|++||.|+.+.    
T Consensus        95 vIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~--~~Qi~---~AD~IvlnK~Dl~~~----  165 (318)
T PRK11537         95 VIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIA--QSQVG---YADRILLTKTDVAGE----  165 (318)
T ss_pred             EEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHH--HHHHH---hCCEEEEeccccCCH----
Confidence            4566676554444444322        258999999987533221101111  11111   123788999998653    


Q ss_pred             HHHHHHHHHHcC--CcEEEeecCCCCCHHHHH
Q 032243           74 YETAKAFADEIG--IPFMETSAKDSTNVEQAF  103 (144)
Q Consensus        74 ~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~  103 (144)
                      .+.+....+..+  .+++.++ ........++
T Consensus       166 ~~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~  196 (318)
T PRK11537        166 AEKLRERLARINARAPVYTVV-HGDIDLSLLF  196 (318)
T ss_pred             HHHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence            234444555443  4666554 2234444444

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=86.57  E-value=8.5  Score=26.55  Aligned_cols=66  Identities=23%  Similarity=0.234  Sum_probs=38.9

Q ss_pred             cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CC-cEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEE
Q 032243           20 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD-NV-NKLLVGNKCDLTANKVVSYETAKAFADEIGIPFME   90 (144)
Q Consensus        20 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~-p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~   90 (144)
                      +-+|.++++++.+ ..++..+...+..+...... .. ...++.|+.+..    ........+.+..+.+++.
T Consensus       140 ~~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~----~~~~~~~~~~~~~~~~vl~  207 (212)
T cd02117         140 GKADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD----RETELIDAFAERLGTQVIH  207 (212)
T ss_pred             ccCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc----cHHHHHHHHHHHcCCCEEE
Confidence            3689999999774 44555555555555443221 22 345889999852    2234556666666765543

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=86.53  E-value=4.3  Score=31.32  Aligned_cols=86  Identities=17%  Similarity=0.250  Sum_probs=50.6

Q ss_pred             ceeccchhHHhh----hhhhhhc--CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243            2 QWDTAGQERFRT----ITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE   75 (144)
Q Consensus         2 i~Dt~G~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~   75 (144)
                      |+||+|...++.    -+..|+.  ...-+.||++++..  ..++...+..+....    .-=+|+||.|-..    +.=
T Consensus       286 LVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~----i~~~I~TKlDET~----s~G  355 (407)
T COG1419         286 LVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFP----IDGLIFTKLDETT----SLG  355 (407)
T ss_pred             EEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCC----cceeEEEcccccC----chh
Confidence            689999754333    2344443  34556677777654  455666555554332    2367899999532    233


Q ss_pred             HHHHHHHHcCCcEEEeecCCCCCH
Q 032243           76 TAKAFADEIGIPFMETSAKDSTNV   99 (144)
Q Consensus        76 ~~~~~~~~~~~~~~~~Sa~~~~~i   99 (144)
                      ....+....+.|+..++  +|+++
T Consensus       356 ~~~s~~~e~~~PV~YvT--~GQ~V  377 (407)
T COG1419         356 NLFSLMYETRLPVSYVT--NGQRV  377 (407)
T ss_pred             HHHHHHHHhCCCeEEEe--CCCCC
Confidence            45556667777777776  44444

>PRK10818 cell division inhibitor MinD; Provisional

Probab=86.49  E-value=7.9  Score=27.69  Aligned_cols=62  Identities=11%  Similarity=0.044  Sum_probs=38.4

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc----C--CCCcEEEEEeCCCC
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA----S--DNVNKLLVGNKCDL   66 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~--~~~p~ilv~nK~Dl   66 (144)
                      |.|+|+.....  ....+..+|.++++++.+. .++..+..++..+....    .  ......+++|..|.
T Consensus       118 iiD~p~~~~~~--~~~~l~~ad~vivv~~p~~-~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~  185 (270)
T PRK10818        118 VCDSPAGIETG--ALMALYFADEAIITTNPEV-SSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP  185 (270)
T ss_pred             EEeCCCCccHH--HHHHHHhCCeEEEEcCCCc-hHHHhHHHHHHHHHHhhccccccccccceEEEEeccCH
Confidence            67888765332  2344678999999998764 45555655555554221    1  12335778898885

>TIGR01969 minD_arch cell division ATPase MinD, archaeal

Probab=86.18  E-value=9.5  Score=26.74  Aligned_cols=60  Identities=10%  Similarity=-0.016  Sum_probs=36.0

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL   66 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl   66 (144)
                      |+|||+....  .....+..+|.++++++.+-. ++.++...+......  ......+++|+.+.
T Consensus       113 IiD~p~~~~~--~~~~~l~~ad~vliv~~~~~~-s~~~~~~~~~~~~~~--~~~~~~vv~N~~~~  172 (251)
T TIGR01969       113 LIDAPAGLER--DAVTALAAADELLLVVNPEIS-SITDALKTKIVAEKL--GTAILGVVLNRVTR  172 (251)
T ss_pred             EEeCCCccCH--HHHHHHHhCCeEEEEECCCCc-hHHHHHHHHHHHHhc--CCceEEEEEECCCc
Confidence            6899876432  334456679999999987643 444443333333222  12235688999985

This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=85.96  E-value=7  Score=29.89  Aligned_cols=85  Identities=12%  Similarity=0.031  Sum_probs=45.6

Q ss_pred             ceeccchhHHhh----hhhhh--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--C---CCcEEEEEeCCCCCCCc
Q 032243            2 QWDTAGQERFRT----ITSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--D---NVNKLLVGNKCDLTANK   70 (144)
Q Consensus         2 i~Dt~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~---~~p~ilv~nK~Dl~~~~   70 (144)
                      |+||+|....+.    ....+  ....+-.++|++.+...  +.+...+..+.....  .   ..+-=+|+||.|-... 
T Consensus       220 LIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~--~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~-  296 (374)
T PRK14722        220 LIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHG--DTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN-  296 (374)
T ss_pred             EEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccCh--HHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC-
Confidence            789999653222    12221  12345668899887532  223333333322210  0   0134677899996322 


Q ss_pred             ccCHHHHHHHHHHcCCcEEEee
Q 032243           71 VVSYETAKAFADEIGIPFMETS   92 (144)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~S   92 (144)
                         .=.+..+....++|+..++
T Consensus       297 ---~G~~l~~~~~~~lPi~yvt  315 (374)
T PRK14722        297 ---LGGVLDTVIRYKLPVHYVS  315 (374)
T ss_pred             ---ccHHHHHHHHHCcCeEEEe
Confidence               2345566777788877777

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=85.01  E-value=1.2  Score=31.39  Aligned_cols=108  Identities=16%  Similarity=0.228  Sum_probs=57.6

Q ss_pred             ceeccchhHH---hhhhhhhhc-----C-CCEEEEEEeCCC-HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 032243            2 QWDTAGQERF---RTITSSYYR-----G-AHGIIIVYDVTD-QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV   71 (144)
Q Consensus         2 i~Dt~G~~~~---~~~~~~~~~-----~-~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~   71 (144)
                      ++|+|||-+.   .+.++..++     + --.+++++|..= -++..-+...+..+...-.-.+|.|-|++|.||.... 
T Consensus       102 ifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk~~-  180 (273)
T KOG1534|consen  102 IFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLKDK-  180 (273)
T ss_pred             EEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhhhh-
Confidence            6899998542   222222222     1 234566666421 0122222222333322111258999999999986441 


Q ss_pred             cCHHHH-------------------------------HHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           72 VSYETA-------------------------------KAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        72 ~~~~~~-------------------------------~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                       +.+++                               .++....++ .+++....+.+.++.++..|-.+++
T Consensus       181 -~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQ  251 (273)
T KOG1534|consen  181 -NKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQ  251 (273)
T ss_pred             -hHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence             11111                               111222232 6788888888888888888877775

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=84.14  E-value=8.3  Score=27.45  Aligned_cols=98  Identities=7%  Similarity=0.152  Sum_probs=56.1

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESF--NNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      |.||.|....  +....+..+|.+|+=+-.+.-+.-  .....|+..+.......+|.-|+.|+..-.... ........
T Consensus        88 lvDleG~as~--~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~~~-~~~~~~~e  164 (231)
T PF07015_consen   88 LVDLEGGASE--LNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAARLT-RAQRIISE  164 (231)
T ss_pred             EEeCCCCCch--hHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcchhh-HHHHHHHH
Confidence            6788775422  124456679999988766533221  122344555544444579999999998742111 11112222


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHH
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFM  104 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~  104 (144)
                      +.+  ++|++.+.-.......+++.
T Consensus       165 ~~~--~lpvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  165 QLE--SLPVLDTELHERDAFRAMFS  187 (231)
T ss_pred             HHh--cCCccccccccHHHHHHHHH
Confidence            332  48888888777666666665

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=83.51  E-value=18  Score=28.22  Aligned_cols=91  Identities=11%  Similarity=0.023  Sum_probs=52.5

Q ss_pred             ceeccchhHH----hhhhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243            2 QWDTAGQERF----RTITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE   75 (144)
Q Consensus         2 i~Dt~G~~~~----~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~   75 (144)
                      +.||+|....    ......+.  ...+-.++|+|.+..  .+++..++..+..    -..-=+|+||.|-...    .=
T Consensus       274 LIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~----~~~~~~I~TKlDEt~~----~G  343 (420)
T PRK14721        274 LIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQG----HGIHGCIITKVDEAAS----LG  343 (420)
T ss_pred             EecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcC----CCCCEEEEEeeeCCCC----cc
Confidence            6899996432    12222222  124567889988743  2334444444322    1344678999996322    23


Q ss_pred             HHHHHHHHcCCcEEEeecCCCCCH-HHHHH
Q 032243           76 TAKAFADEIGIPFMETSAKDSTNV-EQAFM  104 (144)
Q Consensus        76 ~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~~  104 (144)
                      .+..+....++|+..++  +|.++ +++..
T Consensus       344 ~~l~~~~~~~lPi~yvt--~Gq~VP~Dl~~  371 (420)
T PRK14721        344 IALDAVIRRKLVLHYVT--NGQKVPEDLHE  371 (420)
T ss_pred             HHHHHHHHhCCCEEEEE--CCCCchhhhhh
Confidence            45567777888888888  66666 44443

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=83.44  E-value=15  Score=27.75  Aligned_cols=90  Identities=21%  Similarity=0.149  Sum_probs=50.5

Q ss_pred             ceeccchhH-------HhhhhhhhhcCCC-----EEEEEEeCCC-HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243            2 QWDTAGQER-------FRTITSSYYRGAH-----GIIIVYDVTD-QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA   68 (144)
Q Consensus         2 i~Dt~G~~~-------~~~~~~~~~~~~d-----~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~   68 (144)
                      |.||+|...       ...-....+...+     -+++++|.+- .+.+...+.    +....   .--=+|+||.|-..
T Consensus       226 liDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~----F~eav---~l~GiIlTKlDgtA  298 (340)
T COG0552         226 LIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKI----FNEAV---GLDGIILTKLDGTA  298 (340)
T ss_pred             EEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHH----HHHhc---CCceEEEEecccCC
Confidence            689999632       1111223333333     3777779764 344444332    22211   23367899999532


Q ss_pred             CcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHH
Q 032243           69 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  104 (144)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  104 (144)
                      .-.    .+..++..+++|+..+.  -|+++++|..
T Consensus       299 KGG----~il~I~~~l~~PI~fiG--vGE~~~DL~~  328 (340)
T COG0552         299 KGG----IILSIAYELGIPIKFIG--VGEGYDDLRP  328 (340)
T ss_pred             Ccc----eeeeHHHHhCCCEEEEe--CCCChhhccc
Confidence            211    23456778889998888  5677777754

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=83.37  E-value=14  Score=26.40  Aligned_cols=63  Identities=19%  Similarity=0.127  Sum_probs=34.6

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcE-EEEEeCCCC
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNK-LLVGNKCDL   66 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~-ilv~nK~Dl   66 (144)
                      |.||+|...... ....+..+|.+|++...+ ..++..+...+..+.... ....++ .+|.|+.+.
T Consensus       120 IIDt~g~~~~~~-~~~al~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~  184 (267)
T cd02032         120 LFDVLGDVVCGG-FAAPLNYADYALIVTDND-FDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK  184 (267)
T ss_pred             EEeCCCCccccc-chhhhhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence            578876532221 122367799999988764 334444444444333221 123443 467999884

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=82.74  E-value=12  Score=28.26  Aligned_cols=95  Identities=16%  Similarity=0.248  Sum_probs=49.1

Q ss_pred             ceeccchhHHhhhhhhhh-------cCCCEEEEEEeCCCHHH--H-------H-------------HHHHHHHHHHHhcC
Q 032243            2 QWDTAGQERFRTITSSYY-------RGAHGIIIVYDVTDQES--F-------N-------------NVKQWLNEIDRYAS   52 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~-------~~~d~~i~v~d~~~~~s--~-------~-------------~~~~~~~~~~~~~~   52 (144)
                      +.+|.|.....++...+.       -..|+++.|+|..+-..  +       .             .+..++..  +.. 
T Consensus        97 vIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Qi~-  173 (341)
T TIGR02475        97 LIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFED--QLA-  173 (341)
T ss_pred             EEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHH--HHH-
Confidence            456777655555444431       14689999999864321  0       0             01111111  111 


Q ss_pred             CCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-cC-C-cEEEeecCCCCCHHHHHH
Q 032243           53 DNVNKLLVGNKCDLTANKVVSYETAKAFADE-IG-I-PFMETSAKDSTNVEQAFM  104 (144)
Q Consensus        53 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~-~-~~~~~Sa~~~~~i~~l~~  104 (144)
                        .-=+|++||.|+.+...  ........+. .. . +++.++ ....+...++.
T Consensus       174 --~AD~IvlnK~Dl~~~~~--l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~  223 (341)
T TIGR02475       174 --CADLVILNKADLLDAAG--LARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG  223 (341)
T ss_pred             --hCCEEEEeccccCCHHH--HHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence              22488899999875433  2334444444 33 2 455554 33466666665

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>TIGR01007 eps_fam capsular exopolysaccharide family

Probab=82.51  E-value=6  Score=27.05  Aligned_cols=62  Identities=19%  Similarity=0.142  Sum_probs=36.3

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      |+|||..... .........+|.+|+|.+... .+...+...+..+....  ....-+|+||.|..
T Consensus       132 iiD~pp~~~~-~~~~~~~~~~D~vilV~~~~~-~~~~~~~~~~~~l~~~~--~~~~gvVlN~~~~~  193 (204)
T TIGR01007       132 IIDTPPIGTV-TDAAIIARACDASILVTDAGE-IKKRDVQKAKEQLEQTG--SNFLGVVLNKVDIS  193 (204)
T ss_pred             EEeCCCcccc-chHHHHHHhCCeEEEEEECCC-CCHHHHHHHHHHHHhCC--CCEEEEEEeCcccc
Confidence            5788753211 112234567899999998753 34455555555554332  23457789999864

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=82.16  E-value=7.3  Score=23.42  Aligned_cols=45  Identities=18%  Similarity=0.210  Sum_probs=25.0

Q ss_pred             CcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHH
Q 032243           55 VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM  106 (144)
Q Consensus        55 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i  106 (144)
                      .-+||+.+-.=  .+  .....+...++..+.|++.+...   |+..+.+.|
T Consensus        49 aD~VIv~t~~v--sH--~~~~~vk~~akk~~ip~~~~~~~---~~~~l~~~l   93 (97)
T PF10087_consen   49 ADLVIVFTDYV--SH--NAMWKVKKAAKKYGIPIIYSRSR---GVSSLERAL   93 (97)
T ss_pred             CCEEEEEeCCc--Ch--HHHHHHHHHHHHcCCcEEEECCC---CHHHHHHHH
Confidence            35566655442  21  12456677777888877777544   444444443

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=82.02  E-value=6.1  Score=30.10  Aligned_cols=42  Identities=17%  Similarity=0.097  Sum_probs=29.6

Q ss_pred             CCcEEEEEeCCCCCCCcccC--HHHHHHHHHHcCCcEEEeecCCC
Q 032243           54 NVNKLLVGNKCDLTANKVVS--YETAKAFADEIGIPFMETSAKDS   96 (144)
Q Consensus        54 ~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~   96 (144)
                      ..|+++++||.|...... +  .+.+..++...+.+++++||.-.
T Consensus       206 ~KP~lyvaN~~e~~~~~~-n~~~~~i~~~~~~~~~~vV~~sA~~E  249 (372)
T COG0012         206 AKPMLYVANVSEDDLANL-NEYVKRLKELAAKENAEVVPVSAAIE  249 (372)
T ss_pred             cCCeEEEEECCcccccch-hHHHHHHHHHhhhcCCcEEEeeHHHH
Confidence            589999999999743222 2  34455566666778999998743

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=81.91  E-value=13  Score=29.07  Aligned_cols=82  Identities=18%  Similarity=0.130  Sum_probs=45.4

Q ss_pred             ceeccchhH----Hhhhhhhhhc-----CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243            2 QWDTAGQER----FRTITSSYYR-----GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         2 i~Dt~G~~~----~~~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      |+||+|...    ....+..++.     ..+-.+||+|++-..  +++......+..    -.+-=+|+||.|-...   
T Consensus       304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~----~~~~glIlTKLDEt~~---  374 (432)
T PRK12724        304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYES----LNYRRILLTKLDEADF---  374 (432)
T ss_pred             EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcC----CCCCEEEEEcccCCCC---
Confidence            689999632    1111222222     234688899987542  233333333311    1345788999996322   


Q ss_pred             CHHHHHHHHHHcCCcEEEeec
Q 032243           73 SYETAKAFADEIGIPFMETSA   93 (144)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~Sa   93 (144)
                       .=.+..+....++|+..++.
T Consensus       375 -~G~il~i~~~~~lPI~ylt~  394 (432)
T PRK12724        375 -LGSFLELADTYSKSFTYLSV  394 (432)
T ss_pred             -ccHHHHHHHHHCCCEEEEec
Confidence             22355667778888777763

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=80.70  E-value=21  Score=28.12  Aligned_cols=82  Identities=12%  Similarity=0.268  Sum_probs=49.9

Q ss_pred             CCEEEEEEeCC--C--HHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCC-
Q 032243           22 AHGIIIVYDVT--D--QESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD-   95 (144)
Q Consensus        22 ~d~~i~v~d~~--~--~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-   95 (144)
                      .-++++--|.+  +  ++.|.+.. +.+..+...   +.|+++++|-.+=.  ..-+.+.+..+.+.++.+++++++.. 
T Consensus       146 TIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~i---gKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~l  220 (492)
T PF09547_consen  146 TIGIVVTTDGSITDIPRENYVEAEERVIEELKEI---GKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQL  220 (492)
T ss_pred             ceeEEEecCCCccCCChHHHHHHHHHHHHHHHHh---CCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHHc
Confidence            45666666643  2  34555443 355556555   48999999988732  22234556667778899999998765 


Q ss_pred             -CCCHHHHHHHHHH
Q 032243           96 -STNVEQAFMAMAA  108 (144)
Q Consensus        96 -~~~i~~l~~~i~~  108 (144)
                       ..+|..+++.++-
T Consensus       221 ~~~DI~~Il~~vLy  234 (492)
T PF09547_consen  221 REEDITRILEEVLY  234 (492)
T ss_pred             CHHHHHHHHHHHHh
Confidence             2345555544443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.63  E-value=14  Score=29.51  Aligned_cols=88  Identities=17%  Similarity=0.213  Sum_probs=50.5

Q ss_pred             ceeccchhHHhh-h---hhhh--hcCCCEEEEEEeC-CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH
Q 032243            2 QWDTAGQERFRT-I---TSSY--YRGAHGIIIVYDV-TDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY   74 (144)
Q Consensus         2 i~Dt~G~~~~~~-~---~~~~--~~~~d~~i~v~d~-~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~   74 (144)
                      +.||+|...-+. +   ...+  +...|.++||-.+ -..++.+.+...-..+.....+...--++++|+|..+...   
T Consensus       471 LiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk~dtv~d~v---  547 (587)
T KOG0781|consen  471 LIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLTKFDTVDDKV---  547 (587)
T ss_pred             EEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEeccchhhHH---
Confidence            689999753222 1   1222  3468999999753 3345666666666666555433333467899999753221   


Q ss_pred             HHHHHHHHHcCCcEEEee
Q 032243           75 ETAKAFADEIGIPFMETS   92 (144)
Q Consensus        75 ~~~~~~~~~~~~~~~~~S   92 (144)
                      -.+..+....+.|++.+.
T Consensus       548 g~~~~m~y~~~~pi~fvg  565 (587)
T KOG0781|consen  548 GAAVSMVYITGKPILFVG  565 (587)
T ss_pred             HHHhhheeecCCceEEEe
Confidence            122233334467877775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	144
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		5e-55
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		1e-54
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		2e-54
4fmc_B	171	Espg-Rab1 Complex Length = 171		2e-54
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		2e-54
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		3e-54
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		2e-53
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		6e-52
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		2e-51
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		3e-51
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		2e-49
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		4e-48
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		8e-45
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		1e-44
4fmc_F	117	Espg-Rab1 Complex Length = 117		9e-34
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		7e-33
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		8e-33
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		1e-32
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		1e-32
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		2e-32
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		3e-32
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		4e-32
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		1e-31
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		8e-31
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		1e-30
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-30
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		2e-30
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		4e-29
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		2e-28
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		5e-28
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		5e-28
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		5e-28
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		8e-28
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		1e-27
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		1e-27
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		3e-27
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		3e-27
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		3e-27
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		4e-27
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		7e-27
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		9e-27
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		1e-26
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		1e-26
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		1e-26
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		1e-26
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		1e-26
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		1e-26
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		1e-26
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		1e-26
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		2e-26
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		4e-26
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		4e-26
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		7e-26
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		8e-26
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		9e-26
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		1e-25
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		1e-25
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		1e-25
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		2e-25
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		2e-25
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		3e-25
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		9e-25
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		2e-24
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		6e-24
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		2e-23
2efc_B	181	Ara7-GdpATVPS9A Length = 181		2e-23
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		2e-23
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		3e-23
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		4e-23
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		1e-22
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		2e-22
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		6e-22
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		1e-21
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-21
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		1e-21
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		2e-21
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-21
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		3e-21
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		7e-21
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		1e-20
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		2e-20
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		3e-20
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		3e-20
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		4e-20
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		4e-20
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		9e-20
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		1e-19
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		2e-19
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		2e-19
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		6e-19
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		3e-18
4q21_A	189	Molecular Switch For Signal Transduction: Structura		1e-17
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		4e-17
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		5e-17
1vg1_A	185	Gdp-bound Rab7 Length = 185		6e-17
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		7e-17
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		7e-17
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		7e-17
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		7e-17
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		7e-17
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		8e-17
6q21_A	171	Molecular Switch For Signal Transduction: Structura		8e-17
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		8e-17
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		8e-17
1wq1_R	166	Ras-Rasgap Complex Length = 166		8e-17
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		8e-17
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-17
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		8e-17
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		8e-17
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		8e-17
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		8e-17
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		8e-17
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		9e-17
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		9e-17
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		9e-17
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		9e-17
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		9e-17
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		1e-16
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		1e-16
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		2e-16
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		2e-16
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		2e-16
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		3e-16
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-16
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-16
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		3e-16
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		4e-16
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		5e-16
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		6e-16
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		7e-16
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		7e-16
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		7e-16
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		8e-16
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		8e-16
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		9e-16
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		1e-15
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		1e-15
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		1e-15
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-15
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		1e-15
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		1e-15
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-15
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		2e-15
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		2e-15
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		3e-15
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		3e-15
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		4e-15
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		9e-15
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		1e-14
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		1e-14
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		1e-14
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		2e-14
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		5e-14
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		5e-14
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		5e-14
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		6e-14
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		7e-14
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		7e-14
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		8e-14
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		6e-13
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		6e-13
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		9e-13
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		1e-12
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		2e-12
1byu_A	216	Canine Gdp-Ran Length = 216		2e-12
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		3e-12
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		3e-12
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		3e-12
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		3e-12
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		3e-12
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		3e-12
2bku_A	177	Kap95p:rangtp Complex Length = 177		4e-12
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		5e-12
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		7e-12
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		8e-12
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		2e-11
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		2e-11
3icq_B	171	Karyopherin Nuclear State Length = 171		2e-11
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		3e-11
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		3e-11
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		8e-11
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		9e-11
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		9e-11
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		1e-10
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		1e-10
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		1e-10
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		1e-10
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		4e-10
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		5e-10
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		3e-09
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		4e-09
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		4e-09
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		1e-08
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		2e-08
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		3e-08
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		3e-08
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		3e-08
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		3e-08
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		4e-08
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		4e-08
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		4e-08
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		9e-08
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		9e-08
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		1e-07
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		2e-07
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		2e-07
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		2e-07
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		2e-07
1s1c_A	183	Crystal Structure Of The Complex Between The Human		2e-07
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		2e-07
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		2e-07
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		3e-07
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		3e-07
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		3e-07
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		3e-07
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		4e-07
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		5e-07
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		5e-07
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		5e-07
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		6e-07
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		6e-07
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		6e-07
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		6e-07
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		6e-07
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		6e-07
1mh1_A	186	Small G-Protein Length = 186		6e-07
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		7e-07
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		7e-07
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		8e-07
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		9e-07
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		9e-07
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		9e-07
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		9e-07
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		1e-06
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		1e-06
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-06
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		2e-06
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		2e-06
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		2e-06
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-06
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		2e-06
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-06
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		2e-06
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		2e-06
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		3e-06
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		3e-06
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		4e-06
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		4e-06
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		4e-06
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		4e-06
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		4e-06
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		5e-06
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		5e-06
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		7e-06
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		7e-06
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		9e-06
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		9e-06
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		9e-06
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		1e-05
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		1e-05
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		1e-05
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		1e-05
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-05
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-05
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		1e-05
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		1e-05
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		1e-05
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		2e-05
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		2e-05
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		5e-05
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		6e-05
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		6e-05
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		6e-05
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		6e-05
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		7e-05
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		1e-04
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		1e-04
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		1e-04
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		1e-04
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		1e-04
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		1e-04
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		1e-04
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		1e-04
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		1e-04
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		1e-04
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		1e-04
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		1e-04
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		2e-04
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		2e-04
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		2e-04
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		2e-04
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		2e-04
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		2e-04
2kb0_A	178	Cdc42(T35a) Length = 178		2e-04
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		2e-04
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		2e-04
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		2e-04
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		2e-04
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		4e-04
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		5e-04
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		5e-04
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		8e-04
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		9e-04

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  209 bits (532), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 97/127 (76%), Positives = 106/127 (83%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 70  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           KCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +   
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 189
Query: 123 ARPPTVQ 129
           A    V+
Sbjct: 190 AEKSNVK 196

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  207 bits (528), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 95/112 (84%), Positives = 102/112 (91%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 53  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 112
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
           KCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM
Sbjct: 113 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 164

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  207 bits (526), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 95/112 (84%), Positives = 102/112 (91%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 60  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 119
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
           KCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM
Sbjct: 120 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  207 bits (526), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 95/112 (84%), Positives = 102/112 (91%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 60  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 119
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
           KCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM
Sbjct: 120 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  207 bits (526), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 95/113 (84%), Positives = 102/113 (90%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 79  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 138
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 115
           KCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM 
Sbjct: 139 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 191

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  206 bits (525), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 95/112 (84%), Positives = 102/112 (91%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 70  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
           KCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  203 bits (517), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 94/113 (83%), Positives = 101/113 (89%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVG 
Sbjct: 62  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGI 121
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 115
           KCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM 
Sbjct: 122 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 174

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  199 bits (505), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 92/113 (81%), Positives = 99/113 (87%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 87  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 146
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 115
           KCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+F   AA IK R  
Sbjct: 147 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKKRXG 199

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  197 bits (500), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 92/113 (81%), Positives = 99/113 (87%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGII+VYDVTDQES+ NVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 63  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGN 122
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 115
           K DLT  KVV   TAK FAD +GIPF+ETSAK++TNVEQAFM MAA IK RM 
Sbjct: 123 KSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 175

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  196 bits (499), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 92/113 (81%), Positives = 99/113 (87%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGII+VYDVTDQES+ NVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 63  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGN 122
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 115
           K DLT  KVV   TAK FAD +GIPF+ETSAK++TNVEQAFM MAA IK RM 
Sbjct: 123 KSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 175

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  190 bits (483), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 93/145 (64%), Positives = 105/145 (72%), Gaps = 6/145 (4%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRG+HGIIIVYDVTDQESFN VK WL EIDRYA+  V KLLVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           KCDL   +VV Y+ AK FAD   +PF+ETSA DSTNVE AF+ MA  IK+ M SQ ++N 
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESM-SQQNLNE 180
Query: 123 ARPP-----TVQIKGQPVAQKSGCC 142
                     V +KGQ +    GCC
Sbjct: 181 TTQKKEDKGNVNLKGQSLTNTGGCC 205

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  186 bits (472), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 92/145 (63%), Positives = 104/145 (71%), Gaps = 6/145 (4%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRG+HGIIIVYDVTDQESFN VK WL EIDRYA+  V KLLVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           KCDL   +VV Y+ AK FAD   +PF+ETSA DSTNVE AF+ MA  IK+ M SQ ++N 
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESM-SQQNLNE 180
Query: 123 ARPP-----TVQIKGQPVAQKSGCC 142
                     V +KGQ +    G C
Sbjct: 181 TTQKKEDKGNVNLKGQSLTNTGGGC 205

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  175 bits (443), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 82/110 (74%), Positives = 90/110 (81%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRG+HGIIIVYDVTDQESFN VK WL EIDRYA+  V KLLVGN
Sbjct: 75  WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 134
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112
           KCDL   +VV Y+ AK FAD   +PF+ETSA DSTNVE AF+ MA  IK+
Sbjct: 135 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 184

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  175 bits (443), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 80/112 (71%), Positives = 94/112 (83%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGIIIVYDVTD++SF+NVKQW+ EIDRYA +NVNKLLVGN
Sbjct: 63  WDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGN 122
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
           KCDL + +VV+ +  +  AD  GI F+ETSAK++ NVEQAF  MA  IK R+
Sbjct: 123 KCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRV 174

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  138 bits (348), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 62/66 (93%), Positives = 64/66 (96%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 52  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 111
Query: 63  KCDLTA 68
           KCDLT 
Sbjct: 112 KCDLTT 117

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  135 bits (341), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 60/112 (53%), Positives = 85/112 (75%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GN
Sbjct: 60  WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 119
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
           KCD+   + VS E  +  A + GI FMETSAK + NVE AF  +A  IK +M
Sbjct: 120 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  135 bits (340), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 60/112 (53%), Positives = 85/112 (75%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GN
Sbjct: 62  WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 121
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
           KCD+   + VS E  +  A + GI FMETSAK + NVE AF  +A  IK +M
Sbjct: 122 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  135 bits (339), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 60/114 (52%), Positives = 85/114 (74%), Gaps = 1/114 (0%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW   ++ +A+D    LLVGN
Sbjct: 74  WDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGN 133
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116
           K D+   +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +A  I++++ S
Sbjct: 134 KSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 186

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  134 bits (338), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 60/114 (52%), Positives = 85/114 (74%), Gaps = 1/114 (0%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW   ++ +A+D    LLVGN
Sbjct: 61  WDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGN 120
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116
           K D+   +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +A  I++++ S
Sbjct: 121 KSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 173

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  134 bits (336), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 59/114 (51%), Positives = 85/114 (74%), Gaps = 1/114 (0%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTIT++YYRGA GII+VYD+TD+ +F N+KQW   ++ +A+D    LLVGN
Sbjct: 57  WDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGN 116
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116
           K D+   +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +A  I++++ S
Sbjct: 117 KSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  133 bits (335), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 60/114 (52%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW   ++ +A+D    LLVGN
Sbjct: 57  WDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGN 116
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116
           K D    +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +A  I++++ S
Sbjct: 117 KSD-XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  133 bits (334), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 59/114 (51%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTIT++YYRGA GII+VYD+TD+ +F N+KQW   ++ +A+D    LLVGN
Sbjct: 57  WDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGN 116
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116
           K D    +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +A  I++++ S
Sbjct: 117 KSD-XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  131 bits (329), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 58/116 (50%), Positives = 79/116 (68%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR++T +YYR AH ++++YDVT++ SF+N++ WL EI  YA  +V  +L+GN
Sbjct: 65  WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGN 124
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 118
           K D    +VV  E  +  A E G+PFMETSAK   NV+ AF A+A  +K R    P
Sbjct: 125 KVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKAP 180

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  129 bits (323), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 66/119 (55%), Positives = 84/119 (70%), Gaps = 5/119 (4%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITS+YYRG HG+I+VYDVT  ESF NVK+WL+EI++   D+V ++LVGN
Sbjct: 63  WDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ-NCDDVCRILVGN 121
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI----KDRMASQ 117
           K D    KVV  E A  FA ++GI   ETSAK++ NVE+ F  +   +    KD +A Q
Sbjct: 122 KNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 180

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  128 bits (321), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 58/108 (53%), Positives = 76/108 (70%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ DN   LLVGN
Sbjct: 59  WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 118
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           KCD+   +VVS E  +  AD +G  F E SAKD+ NV+Q F  +   I
Sbjct: 119 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/132 (46%), Positives = 83/132 (62%), Gaps = 2/132 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAG ER+RTIT++YYRGA G I+ YD+T++ESFN V+ W  +I  Y+ DN   LLVGN
Sbjct: 62  WDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 121
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           KCD    +VVS E  +  AD +G  F E SAKD+ NV+Q F  +   I ++ +   S++ 
Sbjct: 122 KCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSE--SLDT 179
Query: 123 ARPPTVQIKGQP 134
           A P     K  P
Sbjct: 180 ADPAVTGAKQGP 191

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  127 bits (319), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 81/113 (71%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ DN   +LVGN
Sbjct: 77  WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGN 136
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 115
           KCD+   +VV  E  +  A+++G  F E SAK++ +V QAF  +  +I D+M+
Sbjct: 137 KCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  123 bits (308), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 77/112 (68%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+RTIT++YYRGA G +++YD+ +QESF  V+ W  +I  Y+ DN   +LVGN
Sbjct: 76  WDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGN 135
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
           KCDL   +VV  E  +  AD++G  F E SAK++ NV+Q F  +   I ++M
Sbjct: 136 KCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKM 187

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  121 bits (303), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/108 (51%), Positives = 78/108 (72%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  +++S N+  +L+GN
Sbjct: 75  WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGN 134
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL + + V  E  +AFA E G+ FMETSAK + NVE+AF+  A  I
Sbjct: 135 KSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  119 bits (299), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 55/108 (50%), Positives = 76/108 (70%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGN
Sbjct: 83  WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL   + V  + A+AFA++ G+ F+ETSA DSTNVE AF  +   I
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  119 bits (299), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 55/108 (50%), Positives = 76/108 (70%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGN
Sbjct: 74  WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 133
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL   + V  + A+AFA++ G+ F+ETSA DSTNVE AF  +   I
Sbjct: 134 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 181

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  119 bits (298), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 54/111 (48%), Positives = 81/111 (72%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQE FR+IT SYYRGA G ++VYD+T +++FN++  WL +  ++++ N+  +L+GN
Sbjct: 64  WDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGN 123
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           K DL + + V  E  +AFA E G+ FMETSAK ++NVE+AF+  A  I ++
Sbjct: 124 KSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEK 174

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  119 bits (297), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 56/121 (46%), Positives = 82/121 (67%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR+IT SYYR A+ +I+ YD+T +ESF  + +WL EI++YAS+ V  +LVGN
Sbjct: 80  WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGN 139
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           K DL   + VS + A+ F++   + ++ETSAK+S NVE+ F+ +A  +         +NN
Sbjct: 140 KIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNN 199
Query: 123 A 123
Sbjct: 200 V 200

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  118 bits (296), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 81/113 (71%), Gaps = 1/113 (0%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERF +ITS+YYR A GII+VYD+T +E+F+++ +W+  ID+YAS++   LLVGN
Sbjct: 80  WDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGN 139
Query: 63  KCDLTANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
           K D   ++ ++ +  + FA +I G+ F E SAKD+ NV++ F+ +   I  +M
Sbjct: 140 KLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  118 bits (295), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/118 (48%), Positives = 81/118 (68%), Gaps = 1/118 (0%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGN
Sbjct: 59  WDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 118
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSM 120
           K DL   + V  + A+AFA++  + F+ETSA DSTNVE+AF  +   I  R+ SQ  +
Sbjct: 119 KSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY-RIVSQKQI 175

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  117 bits (293), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 54/108 (50%), Positives = 73/108 (67%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR +T SYYRGA G ++VYD+T + ++N++  WL +     + N   +L+GN
Sbjct: 69  WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGN 128
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL A + V+YE AK FA+E G+ F+E SAK   NVE AF+  A  I
Sbjct: 129 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  117 bits (292), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 54/108 (50%), Positives = 75/108 (69%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAG ER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGN
Sbjct: 83  WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL   + V  + A+AFA++ G+ F+ETSA DSTNVE AF  +   I
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  116 bits (291), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/124 (46%), Positives = 83/124 (66%), Gaps = 9/124 (7%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTIT SYYR A+G I+ YD+T + SF +V  W+ ++ +YA  N+ +LL+GN
Sbjct: 83  WDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGN 142
Query: 63  KCDLTANKVVSYETAKAFADEIGIP-FMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 121
           K DL+  + VS   A++ A+   I   +ETSAKDS+NVE+AF+        R+A++  M 
Sbjct: 143 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFL--------RVATELIMR 194
Query: 122 NARP 125
           +  P
Sbjct: 195 HGGP 198

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  116 bits (291), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 54/108 (50%), Positives = 75/108 (69%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAG ER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGN
Sbjct: 62  WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 121
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL   + V  + A+AFA++ G+ F+ETSA DSTNVE AF  +   I
Sbjct: 122 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 169

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  115 bits (289), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 52/108 (48%), Positives = 73/108 (67%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+ ++   YYRGA   I+VYD+T+QE+F   K W+ E+ R AS ++   L GN
Sbjct: 62  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGN 121
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL   ++V YE A+A+AD+  + FMETSAK + NV   F+A+A  +
Sbjct: 122 KADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  115 bits (288), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 54/108 (50%), Positives = 74/108 (68%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAG ER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+   LVGN
Sbjct: 59  WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGN 118
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL   + V  + A+AFA++ G+ F+ETSA DSTNVE AF  +   I
Sbjct: 119 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 166

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/108 (50%), Positives = 74/108 (68%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAG ER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+   LVGN
Sbjct: 65  WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGN 124
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL   + V  + A+AFA++ G+ F+ETSA DSTNVE AF  +   I
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 52/108 (48%), Positives = 73/108 (67%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+ ++   YYRGA   I+VYD+T++ESF   K W+ E+ R AS N+   L GN
Sbjct: 61  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 120
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL   + V ++ A+++AD+  + FMETSAK S NV + FMA+A  +
Sbjct: 121 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 52/108 (48%), Positives = 73/108 (67%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+ ++   YYRGA   I+VYD+T++ESF   K W+ E+ R AS N+   L GN
Sbjct: 60  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 119
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL   + V ++ A+++AD+  + FMETSAK S NV + FMA+A  +
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 52/108 (48%), Positives = 73/108 (67%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+ ++   YYRGA   I+VYD+T++ESF   K W+ E+ R AS N+   L GN
Sbjct: 60  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 119
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL   + V ++ A+++AD+  + FMETSAK S NV + FMA+A  +
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 52/108 (48%), Positives = 73/108 (67%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+ ++   YYRGA   I+VYD+T++ESF   K W+ E+ R AS N+   L GN
Sbjct: 60  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 119
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL   + V ++ A+++AD+  + FMETSAK S NV + FMA+A  +
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 52/108 (48%), Positives = 73/108 (67%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+ ++   YYRGA   I+VYD+T++ESF   K W+ E+ R AS N+   L GN
Sbjct: 60  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 119
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL   + V ++ A+++AD+  + FMETSAK S NV + FMA+A  +
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 52/108 (48%), Positives = 73/108 (67%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+ ++   YYRGA   I+VYD+T++ESF   K W+ E+ R AS N+   L GN
Sbjct: 60  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 119
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL   + V ++ A+++AD+  + FMETSAK S NV + FMA+A  +
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 52/108 (48%), Positives = 73/108 (67%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+ ++   YYRGA   I+VYD+T++ESF   K W+ E+ R AS N+   L GN
Sbjct: 60  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 119
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL   + V ++ A+++AD+  + FMETSAK S NV + FMA+A  +
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/108 (49%), Positives = 72/108 (66%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQ RFR +T SYYRGA G ++VYD+T + ++N++  WL +     + N   +L+GN
Sbjct: 84  WDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGN 143
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL A + V+YE AK FA+E G+ F+E SAK   NVE AF+  A  I
Sbjct: 144 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 191

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  113 bits (283), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 73/108 (67%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+ ++   YYRGA   I+VYD+T+ ++F   K W+ E+ R AS N+   L GN
Sbjct: 59  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGN 118
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL + + V ++ A+A+AD+  + FMETSAK + NV + FMA+A  +
Sbjct: 119 KADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  113 bits (282), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 73/108 (67%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+ ++   YYRGA   I+VYD+T+ ++F   K W+ E+ R AS N+   L GN
Sbjct: 57  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGN 116
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL + + V ++ A+A+AD+  + FMETSAK + NV + FMA+A  +
Sbjct: 117 KADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  112 bits (280), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 54/114 (47%), Positives = 77/114 (67%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR++T SYYRGA G ++VYD+T +E++N +  WL +    AS N+  +L GN
Sbjct: 64  WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 123
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116
           K DL A++ V++  A  FA E  + F+ETSA    NVE+AF+  A  I +++ S
Sbjct: 124 KKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES 177

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  112 bits (280), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 51/108 (47%), Positives = 72/108 (66%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAG ER+ ++   YYRGA   I+VYD+T++ESF   K W+ E+ R AS N+   L GN
Sbjct: 59  WDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 118
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL   + V ++ A+++AD+  + FMETSAK S NV + FMA+A  +
Sbjct: 119 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  112 bits (279), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 56/120 (46%), Positives = 79/120 (65%), Gaps = 1/120 (0%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+R ITS+YYRGA G ++VYD+T + SF N+++WL E+   A  N+  LLVGN
Sbjct: 62  WDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGN 121
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD-RMASQPSMN 121
           K DL   +V++   A  +A +  + F+ETSA ++TNVE AF  +   I + R   Q + N
Sbjct: 122 KSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNVRQKKQATKN 181

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  111 bits (278), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/114 (46%), Positives = 77/114 (67%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR++T SYYRGA G ++VYD+T +E++N++  WL +    AS N+  +L GN
Sbjct: 79  WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGN 138
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116
           K DL   + V++  A  FA E  + F+ETSA    NVE+AF+  A +I +++ S
Sbjct: 139 KKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDS 192

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  111 bits (278), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 78/115 (67%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAG ER+R ITS+YYRGA G ++V+D+T  +++  V++WL E+  +A   +  +LVGN
Sbjct: 79  WDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGN 138
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 117
           K DL+  + V  E A+ FA+  G+ F+ETSA DSTNVE AF  +   I  +++ Q
Sbjct: 139 KSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  111 bits (278), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 78/115 (67%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAG ER+R ITS+YYRGA G ++V+D+T  +++  V++WL E+  +A   +  +LVGN
Sbjct: 64  WDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGN 123
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 117
           K DL+  + V  E A+ FA+  G+ F+ETSA DSTNVE AF  +   I  +++ Q
Sbjct: 124 KSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/115 (46%), Positives = 74/115 (64%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+R ITS+YYRGA G +IVYD++   S+ N   WL+E+   A DNV   L+GN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGN 126
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 117
           K DL   + V  E +K FA E  + F ETSA +S NV++AF  +  +I  +++  
Sbjct: 127 KSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKH 181

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  110 bits (275), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 49/108 (45%), Positives = 72/108 (66%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAG ER+ ++   YYRGA   I+VYD+T+ ++F   K W+ E+ R AS N+   L GN
Sbjct: 59  WDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGN 118
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL + + V ++ A+A+AD+  + FMETSAK + NV + FMA+A  +
Sbjct: 119 KADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  110 bits (274), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 71/108 (65%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+ ++   YYRGA   I+VYD+T++ESF   K W+ E+ R AS N+   L GN
Sbjct: 61  WDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 120
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL   + V ++ A+++AD+  + F ETSAK S NV + F A+A  +
Sbjct: 121 KADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  108 bits (271), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 52/111 (46%), Positives = 75/111 (67%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR++T SYYRGA G ++VYD+T +E++N +  WL +    AS N+  +L GN
Sbjct: 65  WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 124
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           K DL A++ V++  A  FA E  + F+ETSA    +VE+AF+  A  I ++
Sbjct: 125 KKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 175

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 73/110 (66%)
Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLV 60
           + WDTAGQERF ++   YYRG+   +IVYD+T Q+SF  +K+W+ E+  +  +N+   + 
Sbjct: 75  LIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIA 134
Query: 61  GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           GNKCDL+  + V  + AK +A+ IG   +ETSAK++ N+E+ F  ++  I
Sbjct: 135 GNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  105 bits (263), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 51/111 (45%), Positives = 74/111 (66%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAG ERFR++T SYYRGA G ++VYD+T +E++N +  WL +    AS N+  +L GN
Sbjct: 62  WDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 121
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           K DL A++ V++  A  FA E  + F+ETSA    +VE+AF+  A  I ++
Sbjct: 122 KKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILNK 172

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  104 bits (259), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/108 (49%), Positives = 69/108 (63%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAG ER+R ITS+YYRGA G +IVYD++   S+ N   WL E+   A DNV   L+GN
Sbjct: 64  WDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGN 123
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL   + V  + AK FA E  + F ETSA +S NV++AF  +  +I
Sbjct: 124 KSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAI 171

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 69/105 (65%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+ ++   YYRGA   IIV+DVT+Q SF   K+W+ E+    + N+   L GN
Sbjct: 66  WDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGN 125
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 107
           K DL   + V+ E A+ +A E G+ FMETSAK +TNV++ F  +A
Sbjct: 126 KSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIA 170

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 72/110 (65%)
Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLV 60
           + WDTAGQERFR +   YYRG+   IIVYD+T +E+F+ +K W+ E+ ++   ++   + 
Sbjct: 57  LIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIA 116
Query: 61  GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           GNKCDLT  + V    AK +AD I   F+ETSAK++ N+ + F+ ++  I
Sbjct: 117 GNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  103 bits (257), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 76/113 (67%), Gaps = 1/113 (0%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
           WDTAGQERFR++T++++R A G ++++D+T Q+SF NV+ W++++   A  +N + +L+G
Sbjct: 89  WDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIG 148
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
           NK DL   + V+   A+  AD+ GIP+ ETSA    NVE+A   +   I  RM
Sbjct: 149 NKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 201

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  103 bits (256), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 77/113 (68%), Gaps = 1/113 (0%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
           WDTAG ERFR++T++++R A G ++++D+T+++SF NV+ W++++  +A S+N + +L G
Sbjct: 75  WDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCG 134
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
           NK DL   + V  E A+  A++ GIP+ ETSA + TN+  A   +   I  RM
Sbjct: 135 NKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRM 187

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  101 bits (252), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 71/110 (64%)
Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLV 60
           + WDTAG ERFR +   YYRG+   IIVYD+T +E+F+ +K W+ E+ ++   ++   + 
Sbjct: 58  LIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIA 117
Query: 61  GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           GNKCDLT  + V    AK +AD I   F+ETSAK++ N+ + F+ ++  I
Sbjct: 118 GNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  100 bits (250), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/117 (41%), Positives = 73/117 (62%), Gaps = 6/117 (5%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR+I  SY+R A G++++YDVT ++SF N+++W++ I+  A + V  +LVGN
Sbjct: 82  WDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGN 141
Query: 63  KCDL------TANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           K D+         K V     +  A   G  F ETSAKD +N+ +A + +A  +K R
Sbjct: 142 KADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 99.4 bits (246), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 48/114 (42%), Positives = 74/114 (64%), Gaps = 5/114 (4%)
Query: 3   WDTAGQERFR-TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLV 60
           WDTAGQERFR ++   YYR  H ++ VYD+T+  SF+++  W+ E  ++  ++++ ++LV
Sbjct: 74  WDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILV 133
Query: 61  GNKCDLTANKVVSYETAKAFADEIGIPFMETSAK---DSTNVEQAFMAMAASIK 111
           GNKCDL +   V  + A+ FAD   +P  ETSAK   D+ +VE  FM +A  +K
Sbjct: 134 GNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 67/105 (63%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERF  +   YYR ++G I+VYD+TD++SF  VK W+ E+ +   + +   +VGN
Sbjct: 74  WDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGN 133
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 107
           K DL   + VS + A+++A+ +G     TSAK +  +E+ F+ + 
Sbjct: 134 KIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 178

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 86/147 (58%), Gaps = 8/147 (5%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
           WDTAG ERFR++T++++R A G ++++D+T Q+SF NV+ W++++   A  +N + +L+G
Sbjct: 75  WDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIG 134
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 121
           NK DL   + V+   A+  A++ GIP+ ETSA    NVE++   +   I  RM       
Sbjct: 135 NKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEKCVEKT 194
Query: 122 NARPPTV------QIKGQPVAQKSGCC 142
              P TV      ++ G+  A+K   C
Sbjct: 195 QV-PDTVNGGNSGKLDGEKPAEKKCAC 220

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 67/105 (63%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERF  +   YYR ++G I+VYD+TD++SF  VK W+ E+ +   + +   +VGN
Sbjct: 60  WDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGN 119
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 107
           K DL   + VS + A+++A+ +G     TSAK +  +E+ F+ + 
Sbjct: 120 KIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 164

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 67/105 (63%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERF  +   YYR ++G I+VYD+TD++SF  VK W+ E+ +   + +   +VGN
Sbjct: 60  WDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGN 119
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 107
           K DL   + VS + A+++A+ +G     TSAK +  +E+ F+ + 
Sbjct: 120 KIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 164

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 75/113 (66%), Gaps = 1/113 (0%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
           WDTAG ERFR++T++++R A G ++++D+T Q+SF NV+ W++++   A  +N + +L+G
Sbjct: 75  WDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIG 134
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
           NK DL   + V+   A+  A++ GIP+ ETSA    NVE++   +   I  RM
Sbjct: 135 NKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRM 187

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/109 (46%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDN-VNKLLVG 61
           WDTAGQERFRT+T SYYRGA G+I+VYDVT +++F  +  WLNE++ Y + N +   LVG
Sbjct: 69  WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVG 128
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           NK D   N+ V       FA +    F+E SAK    V+ AF  +   I
Sbjct: 129 NKID-KENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 95.9 bits (237), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 54/146 (36%), Positives = 84/146 (57%), Gaps = 10/146 (6%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAG ERFR++  SY R +   ++VYD+T+  SF    +W++++      +V  +LVGN
Sbjct: 67  WDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGN 126
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           K DL   + VS E  +  A E+ + F+ETSAK   NV+Q F  +AA++    ++Q   + 
Sbjct: 127 KTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQ---DR 183
Query: 123 ARPPTVQIK-----GQPVAQKSGCCS 143
           +R   + IK      QPV++  G CS
Sbjct: 184 SREDMIDIKLEKPQEQPVSE--GGCS 207

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 71/114 (62%), Gaps = 5/114 (4%)
Query: 3   WDTAGQERFR-TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLV 60
           WDTAGQERFR ++   YYR  H ++ VYD T+  SF+++  W+ E  ++  ++++ ++LV
Sbjct: 83  WDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILV 142
Query: 61  GNKCDLTANKVVSYETAKAFADEIGIPFMETSAK---DSTNVEQAFMAMAASIK 111
           GNKCDL +   V  + A+ FAD    P  ETSAK   D+ +VE  F  +A  +K
Sbjct: 143 GNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKLK 196

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 83/145 (57%), Gaps = 9/145 (6%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAG ERFR++  SY R +   ++VYD+T+  SF    +W++++      +V  +LVGN
Sbjct: 70  WDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGN 129
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           K DL   + VS E  +  A E+ + F+ETSAK   NV+Q F  +AA++    ++Q   + 
Sbjct: 130 KTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQ---DR 186
Query: 123 ARPPTVQIK-----GQPVAQKSGCC 142
           +R   + IK      QPV++  GC 
Sbjct: 187 SREDMIDIKLEKPQEQPVSE-GGCL 210

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 70/108 (64%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR++  SY R +   ++VYD+T+  SF+   +W++++      +V  +LVGN
Sbjct: 68  WDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGN 127
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL+  + VS E  +  A E+ + F+ETSAK   NV+Q F  +AA++
Sbjct: 128 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 68/108 (62%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR++  SY R +   ++VYD+T+  SF    +W++++      +V  +LVGN
Sbjct: 60  WDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGN 119
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL   + VS E  +  A E+ + F+ETSAK   NV+Q F  +AA++
Sbjct: 120 KTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
           WDTAG ERFR++T++++R A G ++ +D+T Q+SF NV+ W +++   A  +N + +L+G
Sbjct: 75  WDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIG 134
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           NK DL   + V+   A+  A++ GIP+ ETSA    NVE++   +   I  R
Sbjct: 135 NKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKR 186

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
           WDTAG ERFR++T++++R A G ++ +D+T Q+SF NV+ W +++   A  +N + +L+G
Sbjct: 75  WDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIG 134
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           NK DL   + V+   A+  A++ GIP+ ETSA    NVE++   +   I  R
Sbjct: 135 NKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKR 186

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 92.0 bits (227), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 68/108 (62%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR++  SY R +   ++VYD+T+  SF    +W++++      +V  +LVGN
Sbjct: 55  WDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGN 114
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL   + VS E  +  A E+ + F+ETSAK   NV+Q F  +AA++
Sbjct: 115 KTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERF ++   YYR A   ++VYDVT  +SF   + W+ E+   AS ++   LVGN
Sbjct: 57  WDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGN 116
Query: 63  KCDLT---ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K D       + V+ E  +  A+E G+ F ETSAK   NV   F+ +   I
Sbjct: 117 KIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 76/129 (58%), Gaps = 3/129 (2%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAG ERFR++  SY R +   ++VYD+T+  SF    +W++++      +V  +LVGN
Sbjct: 60  WDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGN 119
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           K DL   + VS E  +  A E+ + F+ETSAK   NV+Q F  +AA++    ++Q   + 
Sbjct: 120 KTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQ---DR 176
Query: 123 ARPPTVQIK 131
           +R   + IK
Sbjct: 177 SREDMIDIK 185

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 68/108 (62%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR++  SY R +   ++VYD+T+  SF    +W++++      +V  +LVGN
Sbjct: 56  WDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGN 115
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL   + ++ E  +  A E+ + F+ETSAK   NV+Q F  +A+++
Sbjct: 116 KTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 163

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 89.7 bits (221), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 74/115 (64%), Gaps = 10/115 (8%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK----- 57
           WDTAGQERF+++  ++YRGA   ++VYDVT+  SF N+K W +E   +A  NVN      
Sbjct: 63  WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHA--NVNSPETFP 120
Query: 58  -LLVGNKCDL-TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAAS 109
            +++GNK D   + K+VS ++A+  A  +G IP   TSAK++ NV+ AF  +A S
Sbjct: 121 FVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARS 175

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 63/108 (58%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR++  SY R +   I+VYD+T+++SF N  +W+ +I      +V   LVGN
Sbjct: 55  WDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGN 114
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL   + V+YE     A E    F ETSAK   N++  F   A+ +
Sbjct: 115 KTDLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 67/125 (53%), Gaps = 7/125 (5%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 121
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+     Q  + 
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR-----QHKLR 169
Query: 122 NARPP 126
              PP
Sbjct: 170 KLNPP 174

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 83.6 bits (205), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 71/110 (64%), Gaps = 6/110 (5%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKL 58
           WDTAGQERF+++  ++YRGA   ++V+DVT   +F  +  W +E    AS    +N   +
Sbjct: 62  WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 59  LVGNKCDLTANKVVSYETAKAFA-DEIGIPFMETSAKDSTNVEQAFMAMA 107
           ++GNK DL  N+ V+ + A+A+   +  IP+ ETSAK++ NVEQAF  +A
Sbjct: 122 VLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 83.2 bits (204), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 6/106 (5%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKL 58
           WDTAGQERFR++ + +YRG+   ++ + V D +SF N+  W  E   YA     ++   +
Sbjct: 65  WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 124
Query: 59  LVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
           ++GNK D+   + VS E A+A+  + G  P+ ETSAKDSTNV  AF
Sbjct: 125 ILGNKTDIKERQ-VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAF 169

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 82.8 bits (203), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 71/110 (64%), Gaps = 6/110 (5%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKL 58
           WDTAGQERF+++  ++YRGA   ++V+DVT   +F  +  W +E    AS    +N   +
Sbjct: 62  WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 59  LVGNKCDLTANKVVSYETAKAFA-DEIGIPFMETSAKDSTNVEQAFMAMA 107
           ++GNK DL  N+ V+ + A+A+   +  IP+ ETSAK++ NVEQAF  +A
Sbjct: 122 VLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 82.8 bits (203), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLV 60
           M WDTAGQE F  IT +YYRGA   ++V+  TD+ESF  +  W  ++     D +   LV
Sbjct: 57  MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGD-IPTALV 115
Query: 61  GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 107
            NK DL  +  +  E A+  A  + + F  TS K+  NV + F  +A
Sbjct: 116 QNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA 162

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 82.8 bits (203), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 62  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 121
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 122 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 170

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 82.4 bits (202), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 61  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 120
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 121 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 169

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 82.4 bits (202), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 61  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 120
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 121 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 169

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 82.4 bits (202), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 6/106 (5%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKL 58
           WDTAGQERFR++ + +YRG+   ++ + V D +SF N+  W  E   YA     ++   +
Sbjct: 63  WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 122
Query: 59  LVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
           ++GNK D++  + VS E A+A+  + G  P+ ETSAKD+TNV  AF
Sbjct: 123 ILGNKIDISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 167

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 6/106 (5%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKL 58
           WDTAGQERFR++ + +YRG+   ++ + V D +SF N+  W  E   YA     ++   +
Sbjct: 61  WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 120
Query: 59  LVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
           ++GNK D++  + VS E A+A+  + G  P+ ETSAKD+TNV  AF
Sbjct: 121 ILGNKIDISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 165

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 63  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 122
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 123 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 171

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 82.4 bits (202), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 82.4 bits (202), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 82.4 bits (202), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 82.0 bits (201), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 82.0 bits (201), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 70/110 (63%), Gaps = 6/110 (5%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKL 58
           WDTAGQERF+++  ++YRGA   ++V+DVT   +F  +  W +E    AS    +N   +
Sbjct: 62  WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 59  LVGNKCDLTANKVVSYETAKAFA-DEIGIPFMETSAKDSTNVEQAFMAMA 107
           ++GNK D   N+ V+ + A+A+   +  IP+ ETSAK++ NVEQAF  +A
Sbjct: 122 VLGNKIDF-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A + V    A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKCDL-AGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           N+CDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NRCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DT GQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 70/110 (63%), Gaps = 6/110 (5%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKL 58
           WDTAG ERF+++  ++YRGA   ++V+DVT   +F  +  W +E    AS    +N   +
Sbjct: 62  WDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121
Query: 59  LVGNKCDLTANKVVSYETAKAFA-DEIGIPFMETSAKDSTNVEQAFMAMA 107
           ++GNK DL  N+ V+ + A+A+   +  IP+ ETSAK++ NVEQAF  +A
Sbjct: 122 VLGNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAG+E +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAG E +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DT GQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +    +
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREFR 164

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE    +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 79.7 bits (195), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAG E +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 61  LDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 120
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 121 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 169

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAG E +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAG E +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 79.3 bits (194), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD-NVNKLLVGN 62
           DTAGQE +  I  +Y+R   G + V+ +T+ ESF     +  +I R   D NV  LLVGN
Sbjct: 58  DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 117
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           K DL   + VS E AK  AD+  + ++ETSAK   NV++ F  +   I+ R
Sbjct: 118 KSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAG E +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAG E +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 79.0 bits (193), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 66/106 (62%), Gaps = 6/106 (5%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKL 58
           WDTAGQERF+++ + +YRGA   ++ + V D++SF N+  W  E   YA     ++   +
Sbjct: 61  WDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFV 120
Query: 59  LVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
           ++GNK D   ++ V+ E A+ +  E G  P++ETSAKD TNV  AF
Sbjct: 121 VLGNKVD-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAF 165

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAG E +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVG 61
           DTAG E +  I  +Y+R   G ++V+ +T+ ESF    ++  +I R  +  D +  L+VG
Sbjct: 61  DTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVG 120
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 117
           NK DL   + V  E A++ A+E G+ ++ETSAK   NV++ F  +   I+ +  S+
Sbjct: 121 NKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSE 176

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVG 61
           DTAG E +  I  +Y+R   G ++V+ +T+ ESF    ++  +I R  +  D +  L+VG
Sbjct: 57  DTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVG 116
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 117
           NK DL   + V  E A++ A+E G+ ++ETSAK   NV++ F  +   I+ +  S+
Sbjct: 117 NKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSE 172

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVG 61
            DTAGQE F  +   Y R  HG ++V+ + D++SFN V +   +I R    D+   +LVG
Sbjct: 62  LDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG 121
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NK DL + + V    A AF     + + E SAK   NV++AF  +  +++
Sbjct: 122 NKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 171

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NK DL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKSDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD-NVNKLLVGN 62
           DTAGQE +  I  +Y+R   G + V+ +T+ ESF     +  +I R   D NV  LLVGN
Sbjct: 68  DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 127
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           K DL   + VS E AK  A++  + ++ETSAK   NV++ F  +   I+ R
Sbjct: 128 KSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 178

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   SD+V  +LVG
Sbjct: 74  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVG 133
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL   + V  + A   A   GIPF+ETSAK    VE AF  +   I+
Sbjct: 134 NKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 182

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD-NVNKLLVGN 62
           DTAGQE +  I  +Y+R   G + V+ +T+ ESF     +  +I R   D NV  LLVGN
Sbjct: 72  DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 131
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           K DL   + VS E AK  A++  + ++ETSAK   NV++ F  +   I+ R
Sbjct: 132 KSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD-NVNKLLVGN 62
           DTAGQE +  I  +Y+R   G + V+ +T+ ESF     +  +I R   D NV  LLVGN
Sbjct: 60  DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 119
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           K DL   + VS E AK  A++  + ++ETSAK   NV++ F  +   I+ R
Sbjct: 120 KSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGN 62
           DTAG E+F ++   Y +   G I+VY + +Q+SF ++K   ++I R    + V  +LVGN
Sbjct: 57  DTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGN 116
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 103
           K DL + + VS    +A A+E G PFMETSAK  T V++ F
Sbjct: 117 KVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELF 157

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVG 61
            DTAGQE F  +   Y R   G ++V+ VTD+ SF  + ++  +I R    D    +L+G
Sbjct: 58  LDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIG 117
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NK DL   + V+ E  +  A ++ + +ME SAK   NV+QAF  +   I+
Sbjct: 118 NKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 167

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVG
Sbjct: 57  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL  ++ V  + A+  A   GIPF+ETSAK    V+ AF  +   I+
Sbjct: 117 NKCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 75.5 bits (184), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+ +I   YYRGA   I+V+D+++  + +  K W+N++    S N   +LV N
Sbjct: 98  WDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK--ISSNYIIILVAN 155
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K D    +V   E  K +A +  + F++TSAK  TN++  F  +A  I
Sbjct: 156 KIDKNKFQVDILEVQK-YAQDNNLLFIQTSAKTGTNIKNIFYMLAEEI 202

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTA QE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NK DL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKXDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTA QE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NK DL A  V S + A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKXDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAG E +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVG
Sbjct: 74  LDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 133
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL  ++ V  + A+  A   GIPF+ETSAK    V+ AF  +   I+
Sbjct: 134 NKCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 182

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD-NVNKLLVGN 62
           DTAG E +  I  +Y+R   G + V+ +T+ ESF     +  +I R   D NV  LLVGN
Sbjct: 60  DTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGN 119
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           K DL   + VS E AK  A++  + ++ETSAK   NV++ F  +   I+ R
Sbjct: 120 KSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 170

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 73.2 bits (178), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Query: 2   QW------DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DN 54
           QW      DTAGQE F  +   Y R   G +IVY VTD+ SF +V ++   I R    ++
Sbjct: 64  QWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES 123
Query: 55  VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD-STNVEQAFMAMAASIK 111
              +LV NK DL   + V+ +  K  A +  IP++ETSAKD   NV++ F  +   I+
Sbjct: 124 FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 181

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 73.2 bits (178), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Query: 2   QW------DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DN 54
           QW      DTAGQE F  +   Y R   G +IVY VTD+ SF +V ++   I R    ++
Sbjct: 59  QWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES 118
Query: 55  VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD-STNVEQAFMAMAASIK 111
              +LV NK DL   + V+ +  K  A +  IP++ETSAKD   NV++ F  +   I+
Sbjct: 119 FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 176

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 73.2 bits (178), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Query: 2   QW------DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DN 54
           QW      DTAGQE F  +   Y R   G +IVY VTD+ SF +V ++   I R    ++
Sbjct: 64  QWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES 123
Query: 55  VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD-STNVEQAFMAMAASIK 111
              +LV NK DL   + V+ +  K  A +  IP++ETSAKD   NV++ F  +   I+
Sbjct: 124 FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 181

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Query: 2   QW------DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DN 54
           QW      DTAGQE F  +   Y R   G +IVY VTD+ SF +V ++   I R    ++
Sbjct: 64  QWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES 123
Query: 55  VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD-STNVEQAFMAMAASIK 111
              +LV NK DL   + V+ +  K  A +  IP++ETSAKD   NV++ F  +   I+
Sbjct: 124 FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 181

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 72.8 bits (177), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVG
Sbjct: 57  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NK DL  ++ V  + A+  A   GIPF+ETSAK    V+ AF  +   I+
Sbjct: 117 NKSDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 72.8 bits (177), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVG
Sbjct: 57  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NK DL  ++ V  + A+  A   GIPF+ETSAK    V+ AF  +   I+
Sbjct: 117 NKSDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 72.4 bits (176), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVG
Sbjct: 57  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NK DL  ++ V  + A+  A   GIPF+ETSAK    V+ AF  +   I+
Sbjct: 117 NKSDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGN 62
           DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +D+V  +LVGN
Sbjct: 57  DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGN 116
Query: 63  KCDLTANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAFMAMAASI 110
           KCDL   +VV  E  +  A +     F+E+SAK   NV + F  +   I
Sbjct: 117 KCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGN 62
           DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +D+V  +LVGN
Sbjct: 59  DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGN 118
Query: 63  KCDLTANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAFMAMAASI 110
           KCDL   +VV  E  +  A +     F+E+SAK   NV + F  +   I
Sbjct: 119 KCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 68.9 bits (167), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGN 62
           DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVGN
Sbjct: 57  DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 116
Query: 63  KCDLTANKVVSYETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAASI 110
           KCDL   +VV  E  +  A +     F+E+SAK   NV + F  +   I
Sbjct: 117 KCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGN 62
           DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVGN
Sbjct: 57  DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 116
Query: 63  KCDLTANKVVSYETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAASI 110
           KCDL   +VV  E  +  A +     F+E+SAK   NV + F  +   I
Sbjct: 117 KCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQE+F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GN
Sbjct: 57  WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 115
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMN 121
           K D+   KV +   +  F  +  + + + SAK + N E+ F+ +A   I D      +M 
Sbjct: 116 KVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 173
Query: 122 NARPPTV 128
              PP V
Sbjct: 174 ALAPPEV 180

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQE+F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GN
Sbjct: 64  WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 122
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMN 121
           K D+   KV +   +  F  +  + + + SAK + N E+ F+ +A   I D      +M 
Sbjct: 123 KVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180
Query: 122 NARPPTV 128
              PP V
Sbjct: 181 ALAPPEV 187

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQE+F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GN
Sbjct: 64  WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 122
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMN 121
           K D+   KV +   +  F  +  + + + SAK + N E+ F+ +A   I D      +M 
Sbjct: 123 KVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180
Query: 122 NARPPTV 128
              PP V
Sbjct: 181 ALAPPEV 187

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQE+F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GN
Sbjct: 64  WDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 122
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMN 121
           K D+   KV +   +  F  +  + + + SAK + N E+ F+ +A   I D      +M 
Sbjct: 123 KVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180
Query: 122 NARPPTV 128
              PP V
Sbjct: 181 ALAPPEV 187

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQE+F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GN
Sbjct: 69  WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 127
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMN 121
           K D+   KV +   +  F  +  + + + SAK + N E+ F+ +A   I D      +M 
Sbjct: 128 KVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 185
Query: 122 NARPPTV 128
              PP V
Sbjct: 186 ALAPPEV 192

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQE+F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GN
Sbjct: 64  WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 122
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMN 121
           K D+   KV +   +  F  +  + + + SAK + N E+ F+ +A   I D      +M 
Sbjct: 123 KVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180
Query: 122 NARPPTV 128
              PP V
Sbjct: 181 CLAPPEV 187

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQE+F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GN
Sbjct: 69  WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 127
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMN 121
           K D+   KV +   +  F  +  + + + SAK + N E+ F+ +A   I D      +M 
Sbjct: 128 KVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 185
Query: 122 NARPPTV 128
              PP V
Sbjct: 186 ALAPPEV 192

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 12/136 (8%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAG E+F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GN
Sbjct: 66  WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGN 124
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           K D+   KV +      F  +  + + + SAK + N E+ F+ +A     ++A  P +  
Sbjct: 125 KVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR----KLAGNPQLEF 178
Query: 123 A-----RPPTVQIKGQ 133
                  PP VQ+  Q
Sbjct: 179 VASPALAPPEVQVDEQ 194

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQE+F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GN
Sbjct: 64  WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 122
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K D+   KV +   +  F  +  + + + SAK + N E+ F+ +A  +
Sbjct: 123 KVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQE+F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GN
Sbjct: 64  WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 122
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K D+   KV +   +  F  +  + + + SAK + N E+ F+ +A  +
Sbjct: 123 KVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 66.2 bits (160), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 4/127 (3%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQE++  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GN
Sbjct: 64  WDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 122
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMN 121
           K D+   KV +   +  F  +  + + + SAK + N E+ F+ +A   I D      +M 
Sbjct: 123 KVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180
Query: 122 NARPPTV 128
              PP V
Sbjct: 181 ALAPPEV 187

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQE+F  +   YY  A   II +DVT + ++ NV  W  ++ R   +N+  +L GN
Sbjct: 64  WDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 122
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K D+   KV +   +  F  +  + + + SAK + N E+ F+ +A  +
Sbjct: 123 KVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAG E+F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GN
Sbjct: 64  WDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 122
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS-IKDRMASQPSMN 121
           K D+   KV +   +  F  +  + + + SAK + N E+ F+ +A   I D      +M 
Sbjct: 123 KVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180
Query: 122 NARPPTVQIKGQPVAQ 137
              PP V +     AQ
Sbjct: 181 ALAPPEVVMDPALAAQ 196

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 7/118 (5%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAG E+F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GN
Sbjct: 59  WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGN 117
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSM 120
           K D+   KV +      F  +  + + + SAK + N E+ F+ +A     ++A  P +
Sbjct: 118 KVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR----KLAGNPQL 169

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 7/118 (5%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAG E+F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GN
Sbjct: 58  WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGN 116
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSM 120
           K D+   KV +      F  +  + + + SAK + N E+ F+ +A     ++A  P +
Sbjct: 117 KVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLAR----KLAGNPQL 168

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAG E+F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GN
Sbjct: 66  WDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 124
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K D+   KV +   +  F  +  + + + SAK + N E+ F+ +A  +
Sbjct: 125 KVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAG E+F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GN
Sbjct: 60  WDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGN 118
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K D+   KV +   +  F  +  + + + SAK + N E+ F+ +A  +
Sbjct: 119 KVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 4   DTAGQERFRTI-TSSYYRGAHGIIIVYDVTDQESFNNV---KQWLNEIDRYASDNVNKLL 59
           DTAGQE   TI    + R   G ++VYD+TD+ SF  V   K  L+EI +    NV  +L
Sbjct: 82  DTAGQED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK--PKNVTLIL 137
Query: 60  VGNKCDLTANKVVSYETAKAFADEIGIPFMETSA-KDSTNVEQAFMAMAASIKDRMASQ 117
           VGNK DL  ++ VS E  +  A E+   F E SA     N+ + F  +   ++ R   Q
Sbjct: 138 VGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMVQ 196

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGN 62
           DTAGQ+ +     +Y    +G I+VY VT  +SF  +K    ++ D      +  +LVGN
Sbjct: 60  DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 103
           K DL   +V+SYE  KA A+     F+E+SAK++      F
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGN 62
           DTAGQ+ +  +  S+  G HG ++VY VT   SF  ++    ++ + +    V  +LVGN
Sbjct: 78  DTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGN 137
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL+  + V     K  A+  G  FME+SA+++   +  F  +   I
Sbjct: 138 KADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGN 62
           DTAGQ+ +     +Y    +G I+VY VT  +SF  +K    ++ D      +  +LVGN
Sbjct: 60  DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 103
           K DL   +V+SYE  KA A+     F+E+SAK++      F
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGN 62
           DTAGQ+ +     +Y    +G I+VY VT  +SF  +K    ++ D      +  +LVGN
Sbjct: 58  DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 117
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 103
           K DL   +V+SYE  KA A+     F+E+SAK++      F
Sbjct: 118 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 158

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGN 62
           DTAGQ+ +     +Y    +G I+VY VT  +SF  +K    ++ D      +  +LVGN
Sbjct: 55  DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 114
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 103
           K DL   +V+SYE  KA A+     F+E+SAK++      F
Sbjct: 115 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 155

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LL 59
           WD  GQ     +   Y  GA G+++VYD+T+ +SF N++ W   + + + ++  +    L
Sbjct: 61  WDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVAL 120
Query: 60  VGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           VGNK DL   + +  E    F  E G      SAK   +V   F  +AA I
Sbjct: 121 VGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    YRGA   ++ + +  + S+ NV K+W+ E+ R+A  NV  +LVG
Sbjct: 62  WDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVG 120
Query: 62  NKCDLTANK--------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K        V++    +    +IG   ++E S+K   NV+  F
Sbjct: 121 TKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD--NVNKLLVG 61
           DT G  +F  +        H  I+VY +T ++S   +K    +I     D  ++  +LVG
Sbjct: 57  DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVG 116
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116
           NKCD + ++ V    A+A A      FMETSAK + NV++ F  +    K R  S
Sbjct: 117 NKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVS 171

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 51/111 (45%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQE+   +   YY GA G I+ +DVT + +  N+ +W+ E      +    ++  N
Sbjct: 66  WDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCAN 125
Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           K D+   + +S +            + E SAK + N    F+ +A     R
Sbjct: 126 KIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGR 176

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 18/128 (14%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG
Sbjct: 61  WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVG 119
Query: 62  NKCDLTANK----------VVSYETAKAFADEIGIP-FMETSAKDSTNVEQAFMAMAASI 110
            K DL  +K           ++    +     IG P ++E S+K   NV+  F A     
Sbjct: 120 TKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAI--- 176
Query: 111 KDRMASQP 118
             R+  QP
Sbjct: 177 --RVVLQP 182

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 13/115 (11%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    YRGA   I+ + +  + S+ NV K+W+ E+  YA   V  +LVG
Sbjct: 59  WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP-GVPIILVG 117
Query: 62  NKCDLTANK----------VVSYETAKAFADEIGIP-FMETSAKDSTNVEQAFMA 105
            K DL  +K           ++    +     IG P ++E S+K   NV+  F A
Sbjct: 118 TKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDA 172

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 13/113 (11%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    YRGA   ++ + +  + S+ N+ K+WL E+  YA   +  +LVG
Sbjct: 59  WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAP-GIPIVLVG 117
Query: 62  NKCDLTANK--------VVSYETAKA--FADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K          S  TA+       IG + ++E S+K   NV+  F
Sbjct: 118 TKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 15/119 (12%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDTAGQ+ +  +   +Y  A  +++ +DVT   SF+N+  +W  E++ +    V  ++VG
Sbjct: 87  WDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVG 145
Query: 62  NKCDLTANKV------------VSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMA 107
            K DL  +K             V+Y   +  A  +G + ++E SA+   NV   F   A
Sbjct: 146 CKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAA 204

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY--ASDNVNKLLVG 61
           DT G  +F  +        H  I+V+ VT ++S   +      I +   + +++  +LVG
Sbjct: 62  DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVG 121
Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAM 106
           NKCD T  +V + E A+A A E    FMETSAK + NV++ F  +
Sbjct: 122 NKCDETQREVDTRE-AQAVAQEWKCAFMETSAKMNYNVKELFQEL 165

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVG
Sbjct: 58  WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 116
Query: 62  NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
           NK DL  ++    E AK              A+ IG   +ME SAK    V + F MA  
Sbjct: 117 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
Query: 108 ASIKDRMASQPS 119
           A+++ R   + S
Sbjct: 177 AALQARRGKKKS 188

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVG
Sbjct: 60  WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 118
Query: 62  NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
           NK DL  ++    E AK              A+ IG   +ME SAK    V + F MA  
Sbjct: 119 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
Query: 108 ASIKDRMASQPS 119
           A+++ R   + S
Sbjct: 179 AALQARRGKKKS 190

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVG
Sbjct: 58  WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 116
Query: 62  NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
           NK DL  ++    E AK              A+ IG   +ME SAK    V + F MA  
Sbjct: 117 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
Query: 108 ASIKDRMASQPS 119
           A+++ R   + S
Sbjct: 177 AALQARRGKKKS 188

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVG
Sbjct: 58  WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 116
Query: 62  NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
           NK DL  ++    E AK              A+ IG   +ME SAK    V + F MA  
Sbjct: 117 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
Query: 108 ASIKDRMASQPS 119
           A+++ R   + S
Sbjct: 177 AALQARRGKKKS 188

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVG
Sbjct: 61  WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 119
Query: 62  NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
           NK DL  ++    E AK              A+ IG   +ME SAK    V + F MA  
Sbjct: 120 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179
Query: 108 ASIKDRMASQPS 119
           A+++ R   + S
Sbjct: 180 AALQARRGKKKS 191

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVG
Sbjct: 60  WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 118
Query: 62  NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
           NK DL  ++    E AK              A+ IG   +ME SAK    V + F MA  
Sbjct: 119 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
Query: 108 ASIKDRMASQPS 119
           A+++ R   + S
Sbjct: 179 AALQARRGKKKS 190

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 26  IIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI 84
           +IVY VTD+ SF    +   ++ R   +D+V  +LVGNK DL  ++ VS +  +A A   
Sbjct: 82  VIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF 141
Query: 85  GIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS 119
              F+ETSA    NV+  F  +   I+ R  S+ +
Sbjct: 142 DCKFIETSAALHHNVQALFEGVVRQIRLRRDSKEA 176

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 26  IIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI 84
           +IVY VTD+ SF    +   ++ R   +D+V  +LVGNK DL  ++ VS +  +A A   
Sbjct: 82  VIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF 141
Query: 85  GIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 117
              F+ETSA    NV+  F  +   I+ R  S+
Sbjct: 142 DCKFIETSAALHHNVQALFEGVVRQIRLRRDSK 174

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 26  IIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI 84
           +IVY VTD+ SF    +   ++ R   +D+V  +LVGNK DL  ++ VS +  +A A   
Sbjct: 77  VIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVF 136
Query: 85  GIPFMETSAKDSTNVEQAFMAMAASIKDR 113
              F+ETSA    NV+  F  +   I+ R
Sbjct: 137 DCKFIETSAALHHNVQALFEGVVRQIRLR 165

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVG
Sbjct: 62  WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 120
Query: 62  NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
           NK DL  ++    E AK              A+ IG   +ME SAK    V + F MA  
Sbjct: 121 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 180
Query: 108 ASIK 111
           A+++
Sbjct: 181 AALQ 184

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVG
Sbjct: 56  WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 114
Query: 62  NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
           NK DL  ++    E AK              A+ IG   +ME SAK    V + F MA  
Sbjct: 115 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 174
Query: 108 ASIK 111
           A+++
Sbjct: 175 AALQ 178

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVG
Sbjct: 58  WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 116
Query: 62  NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
           NK DL  ++    E AK              A+ IG   +ME SAK    V + F MA  
Sbjct: 117 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
Query: 108 ASIK 111
           A+++
Sbjct: 177 AALQ 180

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVG
Sbjct: 59  WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 117
Query: 62  NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
           NK DL  ++    E AK              A+ IG   +ME SAK    V + F MA  
Sbjct: 118 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177
Query: 108 ASIK 111
           A+++
Sbjct: 178 AALQ 181

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVG
Sbjct: 60  WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 118
Query: 62  NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
           NK DL  ++    E AK              A+ IG   +ME SAK    V + F MA  
Sbjct: 119 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
Query: 108 ASIK 111
           A+++
Sbjct: 179 AALQ 182

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVG
Sbjct: 59  WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 117
Query: 62  NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
           NK DL  ++    E AK              A+ IG   +ME SAK    V + F MA  
Sbjct: 118 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177
Query: 108 ASIK 111
           A+++
Sbjct: 178 AALQ 181

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 16/123 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVG
Sbjct: 56  WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 114
Query: 62  NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
           NK DL  ++    E AK              A+ IG   +ME SAK    V + F MA  
Sbjct: 115 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 174
Query: 108 ASI 110
           A++
Sbjct: 175 AAL 177

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 17  SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYE 75
           S  +G    +IVY + D+ SF +  +   ++ R + +D+V  +LVGNK DL   + VS E
Sbjct: 73  SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVE 132
Query: 76  TAKAFADEIGIPFMETSAKDSTNVEQAF 103
             +A A      F+ETSA    NV + F
Sbjct: 133 EGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG
Sbjct: 56  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 114
Query: 62  NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG
Sbjct: 56  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 114
Query: 62  NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 16/130 (12%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y     I++ + V   +S  N+ ++W+ E+  +   NV  +LV 
Sbjct: 78  WDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVA 136
Query: 62  NKCDLTANKVVSYETA------------KAFADEI-GIPFMETSAKDSTNVEQAF-MAMA 107
           NK DL +++ V  E A            +A A  I    ++E SAK    V + F  A  
Sbjct: 137 NKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATR 196
Query: 108 ASIKDRMASQ 117
           A+++ R  SQ
Sbjct: 197 AALQKRYGSQ 206

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +       Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVG
Sbjct: 58  WDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 116
Query: 62  NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
           NK DL  ++  + E AK              A+ IG   +ME SAK    V + F MA  
Sbjct: 117 NKKDLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
Query: 108 ASIK 111
           A+++
Sbjct: 177 AALQ 180

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG
Sbjct: 56  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 114
Query: 62  NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG
Sbjct: 56  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 114
Query: 62  NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG
Sbjct: 56  WDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 114
Query: 62  NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG
Sbjct: 56  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 114
Query: 62  NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG
Sbjct: 56  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 114
Query: 62  NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG
Sbjct: 83  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 141
Query: 62  NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 142 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG
Sbjct: 83  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 141
Query: 62  NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 142 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG
Sbjct: 75  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 133
Query: 62  NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 134 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG
Sbjct: 63  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 121
Query: 62  NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 122 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG
Sbjct: 58  WDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 116
Query: 62  NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 117 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG
Sbjct: 60  WDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 118
Query: 62  NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 119 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG
Sbjct: 56  WDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 114
Query: 62  NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVG
Sbjct: 58  WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 116
Query: 62  NKCDLTANKVVSYETAKAFADEI-------------GIPFMETSAKDSTNVEQAF-MAMA 107
           NK DL  ++    E AK   + +                ++E SAK    V + F MA  
Sbjct: 117 NKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 176
Query: 108 ASIKDR 113
           A ++ R
Sbjct: 177 AGLQVR 182

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y      +I + +    SF NV+ +W  E+ R+   +   LLVG
Sbjct: 57  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVG 115
Query: 62  NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 116 TKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG
Sbjct: 66  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 124
Query: 62  NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 125 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y      +I + +    SF NV+ +W  E+ R+   +   LLVG
Sbjct: 56  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVG 114
Query: 62  NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 115 TKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 169

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y      +I + +    SF NV+ +W  E+ R+   +   LLVG
Sbjct: 57  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVG 115
Query: 62  NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 116 TKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 170

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 16/124 (12%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDTAG E +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVG
Sbjct: 61  WDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 119
Query: 62  NKCDLTANKVVSYETAKA------------FADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
           NK DL  ++    E AK              A+ IG   +ME SAK    V + F MA  
Sbjct: 120 NKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179
Query: 108 ASIK 111
           A+++
Sbjct: 180 AALQ 183

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           +DTAGQE +  +    Y      +I + V +  SF NVK +W+ E+  YA  NV  LL+G
Sbjct: 71  YDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIG 129
Query: 62  NKCDL------------TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            + DL               K +  E  +  A EIG   ++E SA     ++  F
Sbjct: 130 TQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 26  IIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI 84
           +IVY +TD+ SF    +   ++ R   ++++  +LVGNK DL   + VS    +A A   
Sbjct: 85  LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVF 144
Query: 85  GIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 118
              F+ETSA    NV++ F  +   ++ R  S+ 
Sbjct: 145 DXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 178

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAG E +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG
Sbjct: 56  WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 114
Query: 62  NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 18/136 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y      +I + +    S+ NV+ +W  E+ R+   +   +LVG
Sbjct: 56  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVG 114
Query: 62  NKCDLTANK------------VVSYETAKAFADEI-GIPFMETSAKDSTNVEQAFMAMAA 108
            K DL  +K             ++Y    A A EI  + ++E SA     ++  F     
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF---DE 171
Query: 109 SIKDRMASQPSMNNAR 124
           +I+  +  QP+    R
Sbjct: 172 AIRAVLCPQPTRQQKR 187

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAG E +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG
Sbjct: 56  WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 114
Query: 62  NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWL-NEIDRYASDNVNKLLVG 61
           WD  GQ RFR++   Y RG   I+ + D  DQE     K  L N +D+     +  L++G
Sbjct: 72  WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLG 131
Query: 62  NKCDL 66
           NK DL
Sbjct: 132 NKRDL 136

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 16/124 (12%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVG
Sbjct: 78  WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 136
Query: 62  NKCDLTANKVVSYETAKAFADEI-------------GIPFMETSAKDSTNVEQAF-MAMA 107
           NK DL  ++    E AK   + +                ++E SAK    V + F MA  
Sbjct: 137 NKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196
Query: 108 ASIK 111
           A ++
Sbjct: 197 AGLQ 200

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 26  IIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI 84
           +IVY +TD+ SF    +   ++ R   ++++  +LVGNK DL   + VS    +A A   
Sbjct: 85  LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVF 144
Query: 85  GIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 118
              F+ETSA    NV++ F  +   ++ R  S+ 
Sbjct: 145 DCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 178

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDN---VNKLLV 60
           DTAG + ++   S Y+ G +  I+V+DV+  ESF + K W   +     D    +  +LV
Sbjct: 79  DTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLV 138
Query: 61  GNKCDLTANK-VVSYETAKAFADEIGIPFMETSA-KDSTNVEQAFMAMAASI 110
            NK DL   +  V  + A+ +A    + F + SA     + +  F+++A + 
Sbjct: 139 ANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTF 190

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 16/124 (12%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y     I++ + +   +S  N+ ++W  E+  +   NV  +LVG
Sbjct: 78  WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXP-NVPIILVG 136
Query: 62  NKCDLTANKVVSYETAKAFADEI-------------GIPFMETSAKDSTNVEQAF-MAMA 107
           NK DL  ++    E AK   + +                ++E SAK    V + F MA  
Sbjct: 137 NKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196
Query: 108 ASIK 111
           A ++
Sbjct: 197 AGLQ 200

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWL-NEIDRYASDNVNKLLVG 61
           WD  GQ RFR++   Y RG   I+ + D  DQE     K  L N +D+     +  L++G
Sbjct: 81  WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLG 140
Query: 62  NKCDL 66
           NK DL
Sbjct: 141 NKRDL 145

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAG E +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG
Sbjct: 59  WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 117
Query: 62  NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 118 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 25  IIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADE 83
            +IV+ VTD+ SF+ V + L  +       ++  +LVGNK DL  ++ VS E  +  A  
Sbjct: 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT 159
Query: 84  IGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           +    +ETSA    N  + F      I+ R
Sbjct: 160 LSCKHIETSAALHHNTRELFEGAVRQIRLR 189

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y  ++ ++I + +   +S  NV++ W+ E+  +    V  +LVG
Sbjct: 63  WDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQ-GVPIILVG 121
Query: 62  NKCDL------------TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMA 105
            K DL               + V+ +  ++ AD+IG   + E SAK    V + F A
Sbjct: 122 CKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEA 178

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 26  IIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI 84
           +IVY +TD+ SF    +   ++ R   ++++  +LVGNK DL   + VS    +A A   
Sbjct: 85  LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF 144
Query: 85  GIPFMETSAKDSTNVEQAFMAMAASIKDR 113
              F+ETSA    NV++ F  +   ++ R
Sbjct: 145 DCKFIETSAAVQHNVKELFEGIVRQVRLR 173

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAG E +  +    Y      +I + +    SF NV+ +W  E+ R+   N   +LVG
Sbjct: 83  WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVG 141
Query: 62  NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 142 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 26  IIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI 84
           +IVY +TD+ SF    +   ++ R   ++++  +LVGNK DL   + VS    +A A   
Sbjct: 116 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVF 175
Query: 85  GIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 118
              F+ETSA    NV++ F  +   ++ R  S+ 
Sbjct: 176 DCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 209

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 25  IIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADE 83
            +IV+ VTD+ SF+ V + L  +       ++  +LVGNK DL  ++ VS E  +  A  
Sbjct: 79  FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT 138
Query: 84  IGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           +    +ETSA    N  + F      I+ R
Sbjct: 139 LSCKHIETSAALHHNTRELFEGAVRQIRLR 168

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 25  IIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAFADE 83
            +IV+ VTD+ SF+ V + L  +       ++  +LVGNK DL  ++ VS E  +  A  
Sbjct: 89  FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT 148
Query: 84  IGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           +    +ETSA    N  + F      I+ R
Sbjct: 149 LSCKHIETSAALHHNTRELFEGAVRQIRLR 178

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLV 60
           WD  GQ++ R +   YY G  G+I V D  D++  +  +Q L+ I  DR   D +  L+ 
Sbjct: 371 WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIF 429
Query: 61  GNKCDL 66
            NK DL
Sbjct: 430 ANKQDL 435

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWL-NEIDRYASDNVNKLLVG 61
           WD  GQ RFR++   Y RG + I+ + D  D+E     +  L N +D+     +  L++G
Sbjct: 72  WDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLG 131
Query: 62  NKCDL 66
           NK DL
Sbjct: 132 NKRDL 136

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 15/110 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDT+G   +  +    Y  +  ++I +D++  E+ ++V K+W  EI  +   N   LLVG
Sbjct: 81  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVG 139
Query: 62  NKCDLTAN------------KVVSYETAKAFADEIGIP-FMETSAKDSTN 98
            K DL  +              VSY+     A +IG   ++E SA  S N
Sbjct: 140 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLV 60
           WD  GQ++ R +   YY G  G+I V D  D++  +  +Q L+ I  DR   D +  L+ 
Sbjct: 62  WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIF 120
Query: 61  GNKCDL 66
            NK DL
Sbjct: 121 ANKQDL 126

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 15/110 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDT+G   +  +    Y  +  ++I +D++  E+ ++V K+W  EI  +   N   LLVG
Sbjct: 76  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVG 134
Query: 62  NKCDLTAN------------KVVSYETAKAFADEIGIP-FMETSAKDSTN 98
            K DL  +              VSY+     A +IG   ++E SA  S N
Sbjct: 135 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLV 60
           WD  GQ++ R +   YY G  G+I V D  D++  +  +Q L+ I  DR   D +  L+ 
Sbjct: 49  WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIF 107
Query: 61  GNKCDL 66
            NK DL
Sbjct: 108 ANKQDL 113

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLV 60
           WD  GQ++ R +   YY G  G+I V D  D++  +  +Q L+ I  DR   D +  L+ 
Sbjct: 61  WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIF 119
Query: 61  GNKCDL 66
            NK DL
Sbjct: 120 ANKQDL 125

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAG E +  +    Y      +I + +    SF++V+ +W  E+ R+   N   +LVG
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVG 266
Query: 62  NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLV 60
           WD  GQ++ R +   YY G  G+I V D  D++  +  +Q L+ I  DR   D +  L+ 
Sbjct: 49  WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIF 107
Query: 61  GNKCDL 66
            NK DL
Sbjct: 108 ANKQDL 113

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAG E +  +    Y      +I + +    SF++V+ +W  E+ R+   N   +LVG
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVG 266
Query: 62  NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAG E +  +    Y      +I + +    SF++V+ +W  E+ R+   N   +LVG
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVG 266
Query: 62  NKCDLTANK------------VVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL  +K             ++Y    A A EIG + ++E SA     ++  F
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLV 60
           WD  GQ++ R +   YY G  G+I V D  D++  +  +Q L+ I  DR   D +  L+ 
Sbjct: 49  WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAI-ILIF 107
Query: 61  GNKCDL 66
            NK DL
Sbjct: 108 ANKQDL 113

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 15/110 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDT+G   +  +    Y  +  ++I +D++  E+ ++V K+W  EI  +   N   LLVG
Sbjct: 60  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVG 118
Query: 62  NKCDLTAN------------KVVSYETAKAFADEIGIP-FMETSAKDSTN 98
            K DL  +              VSY+     A +IG   ++E SA  S N
Sbjct: 119 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y      +I + +    S+ NV+ +W  E+ R+   +   +LVG
Sbjct: 62  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVG 120
Query: 62  NKCDLTANK------------VVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
            K DL  +K             ++Y    A A EI  + ++E SA     ++  F
Sbjct: 121 TKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 175

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y      +I + +    S+ NV+ +W  E+ R+   +   +LVG
Sbjct: 63  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVG 121
Query: 62  NKCDLTANK------------VVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
            K DL  +K             ++Y    A A EI  + ++E SA     ++  F
Sbjct: 122 TKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGN 62
           DTAGQ+ F  +    Y      ++ + V    SF NV ++W+ EI R        +LVG 
Sbjct: 74  DTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEI-RCHCPKAPIILVGT 132
Query: 63  KCDLTAN------------KVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF-MAMAA 108
           + DL  +            K V  E AK  A+EI    ++E SA    N+++ F  A+ A
Sbjct: 133 QSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVA 192
Query: 109 SIK 111
            I+
Sbjct: 193 GIQ 195

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y  +  +++ + V ++ SF+N+  +W  EI  Y  D    +LVG
Sbjct: 76  WDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVG 134
Query: 62  NKCDL 66
            K DL
Sbjct: 135 LKVDL 139

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLV 60
           WD  G ++ R +   YY G  G+I V D  D++  +  +Q L+ I  DR   D +  L+ 
Sbjct: 52  WDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIF 110
Query: 61  GNKCDL 66
            NK DL
Sbjct: 111 ANKQDL 116

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLV 60
           WD  G ++ R +   YY G  G+I V D  D++  +  +Q L+ I  DR   D +  L+ 
Sbjct: 62  WDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIF 120
Query: 61  GNKCDL 66
            NK DL
Sbjct: 121 ANKQDL 126

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 34/134 (25%)
Query: 3   WDTAGQE---RFR------TITSSY-----YRG-----AHGIIIVYDVTDQESFNNVK-Q 42
           WDTAGQE   R R      T+  +Y      RG     A   +I + +    SF NV+ +
Sbjct: 58  WDTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAK 117
Query: 43  WLNEIDRYASDNVNKLLVGNKCDLTANK------------VVSYETAKAFADEIG-IPFM 89
           W  E+ R+   N   +LVG K DL  +K             ++Y    A A EIG + ++
Sbjct: 118 WYPEV-RHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 176
Query: 90  ETSAKDSTNVEQAF 103
           E SA     ++  F
Sbjct: 177 ECSALTQRGLKTVF 190

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNVNKLLV 60
           WD  G ++ R +   YY G  G+I V D  D++  +  +Q L+ I  DR   D +  L+ 
Sbjct: 51  WDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI-ILIF 109
Query: 61  GNKCDL 66
            NK DL
Sbjct: 110 ANKQDL 115

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y  +  +++ + V ++ SF+N+  +W  EI  Y  D    +LVG
Sbjct: 75  WDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVG 133
Query: 62  NKCDL 66
            K DL
Sbjct: 134 LKVDL 138

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASDNVNKLLVG 61
           WDT+G   +  +    Y  +  +++ +D++  E+ ++ +K+W  EI  Y   +   LL+G
Sbjct: 63  WDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIG 121
Query: 62  NKCDLTAN------------KVVSYETAKAFADEIGIP-FMETSA 93
            K DL  +              +SYE   A A ++G   ++E SA
Sbjct: 122 CKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 166

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASDNVNKLLVG 61
           WDT+G   +  +    Y  +  +++ +D++  E+ ++ +K+W  EI  Y   +   LL+G
Sbjct: 64  WDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIG 122
Query: 62  NKCDLTAN------------KVVSYETAKAFADEIGIP-FMETSA 93
            K DL  +              +SYE   A A ++G   ++E SA
Sbjct: 123 CKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 167

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
           +DTAGQE +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG
Sbjct: 59  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 117
Query: 62  NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
            + DL               K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 118 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
           +DTAGQE +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
Query: 62  NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
            + DL               K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
           +DTAGQE +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG
Sbjct: 58  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 116
Query: 62  NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
            + DL               K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 117 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
           +DTAGQE +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
Query: 62  NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
            + DL               K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
           +DTAGQE +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG
Sbjct: 57  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 115
Query: 62  NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
            + DL               K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 116 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 170

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
           +DTAGQE +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
Query: 62  NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
            + DL               K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
           +DTAGQE +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG
Sbjct: 66  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 124
Query: 62  NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
            + DL               K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 125 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 179

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
           +DTAGQE +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
Query: 62  NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
            + DL               K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASDNVNKLLVG 61
           WDT+G   +  +    Y  +  +++ +D++  E+ ++ +K+W  EI  Y   +   LL+G
Sbjct: 80  WDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIG 138
Query: 62  NKCDLTAN------------KVVSYETAKAFADEIGIP-FMETSA 93
            K DL  +              +SYE   A A ++G   ++E SA
Sbjct: 139 CKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 183

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
           +DTAGQE +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG
Sbjct: 59  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 117
Query: 62  NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
            + DL               K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 118 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
           +DTAGQE +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
Query: 62  NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
            + DL               K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
           +DTAGQE +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG
Sbjct: 63  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 121
Query: 62  NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
            + DL               K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 122 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
           +DTAGQE +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG
Sbjct: 63  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 121
Query: 62  NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
            + DL               K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 122 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
           +DTAGQE +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
Query: 62  NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
            + DL               K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
           +DTAGQE +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
Query: 62  NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
            + DL               K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
           +DTAGQE +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
Query: 62  NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
            + DL               K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
           +DTAGQE +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
Query: 62  NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
            + DL               K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
           +DTAGQE +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
Query: 62  NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
            + DL               K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
           +DTAGQE +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG
Sbjct: 60  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 118
Query: 62  NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
            + DL               K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 119 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
           +DTAGQE +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 114
Query: 62  NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
            + DL               K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 115 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
           +DTAGQE +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG
Sbjct: 58  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 116
Query: 62  NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
            + DL               K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 117 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 4   DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGN 62
           DTAGQE +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG 
Sbjct: 57  DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVGT 115
Query: 63  KCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
           + DL               K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE-IDRYASDNVNKLLVG 61
           WD  GQ+R R++   YYR   G+I V D  D+      ++ +   ++     N   L+  
Sbjct: 49  WDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFA 108
Query: 62  NKCDL 66
           NK DL
Sbjct: 109 NKQDL 113

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE-IDRYASDNVNKLLVG 61
           WD  GQ+R R++   YYR   G+I V D  D+      ++ +   ++     N   L+  
Sbjct: 66  WDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFA 125
Query: 62  NKCDL 66
           NK DL
Sbjct: 126 NKQDL 130

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE-IDRYASDNVNKLLVG 61
           WD  GQ+R R++   YYR   G+I V D  D+      ++ +   ++     N   L+  
Sbjct: 66  WDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFA 125
Query: 62  NKCDL 66
           NK DL
Sbjct: 126 NKQDL 130

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 38.9 bits (89), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 15/115 (13%)
Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
           +DTAG E +  +    Y      ++ + V    SF NVK+ W+ EI  +       LLVG
Sbjct: 60  FDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 118
Query: 62  NKCDL------------TANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAF 103
            + DL               K ++ ETA+  A ++  + ++E SA     ++  F
Sbjct: 119 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	144
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	2e-85
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	7e-83
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	4e-81
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	6e-81
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	3e-80
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	8e-80
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	2e-79
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	2e-79
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	3e-79
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	9e-79
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-78
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	3e-78
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	6e-78
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-77
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-77
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	2e-77
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	2e-77
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	4e-77
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	6e-77
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	6e-77
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	9e-77
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	2e-76
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	2e-76
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	7e-76
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	2e-75
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	3e-75
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	3e-75
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	7e-75
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	7e-75
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-74
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	2e-74
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	4e-74
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	4e-74
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	5e-74
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	2e-73
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	7e-72
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	8e-72
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	1e-70
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	5e-69
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	5e-69
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	4e-68
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	3e-67
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-66
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	2e-66
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	8e-65
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	3e-64
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	3e-64
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	8e-64
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	9e-64
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	1e-63
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	1e-63
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	5e-63
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	6e-63
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	5e-62
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	6e-62
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	6e-62
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	3e-61
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	8e-61
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	1e-60
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	3e-60
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	3e-60
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	5e-59
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-57
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	3e-57
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	1e-52
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	5e-52
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	5e-51
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	1e-50
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	9e-48
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	1e-46
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	2e-36
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	2e-35
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	1e-34
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	6e-34
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	7e-33
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	8e-33
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-32
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	3e-31
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	6e-31
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	7e-30
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	5e-29
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	9e-28
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	5e-27
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	3e-26
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	3e-22
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	8e-19
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	6e-14
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	3e-13
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	8e-13
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	9e-13
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	2e-12
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	3e-12
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	4e-12
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	4e-12
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	4e-12
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	6e-12
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	2e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-09
3llu_A	196	RAS-related GTP-binding protein C; structural geno	2e-09
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	2e-09
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	3e-09
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	7e-09
2ged_A	193	SR-beta, signal recognition particle receptor beta	6e-08
1nrj_B	218	SR-beta, signal recognition particle receptor beta	8e-08
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	3e-07
2fh5_B	214	SR-beta, signal recognition particle receptor beta	5e-07
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	2e-05
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	2e-05
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	1e-04
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	2e-04
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	3e-04

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  247 bits (633), Expect = 2e-85
 Identities = 91/144 (63%), Positives = 103/144 (71%), Gaps = 4/144 (2%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRG+HGIIIVYDVTDQESFN VK WL EIDRYA+  V KLLVGN
Sbjct: 62  WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 121

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ----P 118
           KCDL   +VV Y+ AK FAD   +PF+ETSA DSTNVE AF+ MA  IK+ M+ Q     
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 181

Query: 119 SMNNARPPTVQIKGQPVAQKSGCC 142
           +        V +KGQ +    GCC
Sbjct: 182 TQKKEDKGNVNLKGQSLTNTGGCC 205

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  240 bits (615), Expect = 7e-83
 Identities = 97/127 (76%), Positives = 106/127 (83%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 70  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 129

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           KCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM    +   
Sbjct: 130 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGG 189

Query: 123 ARPPTVQ 129
           A    V+
Sbjct: 190 AEKSNVK 196

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  236 bits (605), Expect = 4e-81
 Identities = 62/141 (43%), Positives = 85/141 (60%), Gaps = 6/141 (4%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAG ER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ DN   LLVGN
Sbjct: 62  WDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 121

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM------AS 116
           KCD+   +VVS E  +  AD +G  F E SAKD+ NV+Q F  +   I ++M      A 
Sbjct: 122 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTAD 181

Query: 117 QPSMNNARPPTVQIKGQPVAQ 137
                  + P +  +  P  Q
Sbjct: 182 PAVTGAKQGPQLTDQQAPPHQ 202

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  235 bits (601), Expect = 6e-81
 Identities = 58/116 (50%), Positives = 79/116 (68%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR++T +YYR AH ++++YDVT++ SF+N++ WL EI  YA  +V  +L+GN
Sbjct: 65  WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGN 124

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 118
           K D    +VV  E  +  A E G+PFMETSAK   NV+ AF A+A  +K R    P
Sbjct: 125 KVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMKAP 180

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  234 bits (600), Expect = 3e-80
 Identities = 62/141 (43%), Positives = 90/141 (63%), Gaps = 1/141 (0%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTIT++YYRGA GII+VYDVTD+ +F N+KQW   ++ +A+D    LLVGN
Sbjct: 74  WDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGN 133

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           K D+   +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +A  I++++ S   +  
Sbjct: 134 KSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGV 192

Query: 123 ARPPTVQIKGQPVAQKSGCCS 143
                  I     +  S   +
Sbjct: 193 GNGKEGNISINSGSGNSSKSN 213

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  232 bits (594), Expect = 8e-80
 Identities = 61/121 (50%), Positives = 86/121 (71%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GN
Sbjct: 62  WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 121

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           KCD+   + VS E  +  A + GI FMETSAK + NVE AF  +A  IK +M        
Sbjct: 122 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNWKATA 181

Query: 123 A 123
           A
Sbjct: 182 A 182

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  232 bits (593), Expect = 2e-79
 Identities = 95/113 (84%), Positives = 102/113 (90%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL EIDRYAS+NVNKLLVGN
Sbjct: 87  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 146

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 115
           KCDLT  KVV Y TAK FAD +GIPF+ETSAK++TNVEQ+FM MAA IK RM 
Sbjct: 147 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 199

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  232 bits (593), Expect = 2e-79
 Identities = 56/121 (46%), Positives = 82/121 (67%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR+IT SYYR A+ +I+ YD+T +ESF  + +WL EI++YAS+ V  +LVGN
Sbjct: 80  WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGN 139

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           K DL   + VS + A+ F++   + ++ETSAK+S NVE+ F+ +A  +         +NN
Sbjct: 140 KIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNN 199

Query: 123 A 123
            
Sbjct: 200 V 200

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  231 bits (591), Expect = 3e-79
 Identities = 56/113 (49%), Positives = 81/113 (71%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ DN   +LVGN
Sbjct: 77  WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGN 136

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA 115
           KCD+   +VV  E  +  A+++G  F E SAK++ +V QAF  +  +I D+M+
Sbjct: 137 KCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  231 bits (590), Expect = 9e-79
 Identities = 49/140 (35%), Positives = 74/140 (52%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAG ERFR++  SY R +   ++VYD+T+  SF    +W++++      +V  +LVGN
Sbjct: 70  WDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGN 129

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           K DL   + VS E  +  A E+ + F+ETSAK   NV+Q F  +AA++    ++Q     
Sbjct: 130 KTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSRE 189

Query: 123 ARPPTVQIKGQPVAQKSGCC 142
                   K Q      G C
Sbjct: 190 DMIDIKLEKPQEQPVSEGGC 209

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  229 bits (587), Expect = 1e-78
 Identities = 53/115 (46%), Positives = 78/115 (67%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAG ER+R ITS+YYRGA G ++V+D+T  +++  V++WL E+  +A   +  +LVGN
Sbjct: 79  WDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGN 138

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 117
           K DL+  + V  E A+ FA+  G+ F+ETSA DSTNVE AF  +   I  +++ Q
Sbjct: 139 KSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  228 bits (584), Expect = 3e-78
 Identities = 55/112 (49%), Positives = 77/112 (68%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+RTIT++YYRGA G +++YD+ +QESF  V+ W  +I  Y+ DN   +LVGN
Sbjct: 76  WDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGN 135

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
           KCDL   +VV  E  +  AD++G  F E SAK++ NV+Q F  +   I ++M
Sbjct: 136 KCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKM 187

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  227 bits (582), Expect = 6e-78
 Identities = 62/119 (52%), Positives = 80/119 (67%), Gaps = 1/119 (0%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITS+YYRG HG+I+VYDVT  ESF NVK+WL+EI++   D+V ++LVGN
Sbjct: 63  WDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGN 121

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 121
           K D    KVV  E A  FA ++GI   ETSAK++ NVE+ F  +   +        +  
Sbjct: 122 KNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 180

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  227 bits (581), Expect = 1e-77
 Identities = 53/113 (46%), Positives = 81/113 (71%), Gaps = 1/113 (0%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERF +ITS+YYR A GII+VYD+T +E+F+++ +W+  ID+YAS++   LLVGN
Sbjct: 80  WDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGN 139

Query: 63  KCDLTANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
           K D   ++ ++ +  + FA +I G+ F E SAKD+ NV++ F+ +   I  +M
Sbjct: 140 KLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  227 bits (581), Expect = 1e-77
 Identities = 56/115 (48%), Positives = 79/115 (68%), Gaps = 1/115 (0%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTIT SYYR A+G I+ YD+T + SF +V  W+ ++ +YA  N+ +LL+GN
Sbjct: 83  WDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGN 142

Query: 63  KCDLTANKVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKDRMAS 116
           K DL+  + VS   A++ A+   I   +ETSAKDS+NVE+AF+ +A  +  R   
Sbjct: 143 KSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGG 197

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  227 bits (580), Expect = 2e-77
 Identities = 55/121 (45%), Positives = 81/121 (66%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGN
Sbjct: 59  WDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 118

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           K DL   + V  + A+AFA++  + F+ETSA DSTNVE+AF  +   I   ++ +   + 
Sbjct: 119 KSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADR 178

Query: 123 A 123
           A
Sbjct: 179 A 179

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  227 bits (581), Expect = 2e-77
 Identities = 60/157 (38%), Positives = 84/157 (53%), Gaps = 17/157 (10%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+R ITS+YYRGA G +IVYD++   S+ N   WL+E+   A DNV   L+GN
Sbjct: 67  WDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGN 126

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP---- 118
           K DL   + V  E +K FA E  + F ETSA +S NV++AF  +  +I  +++       
Sbjct: 127 KSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLG 186

Query: 119 ---------SMNNARPPTVQIKGQPVAQK----SGCC 142
                      +    PT+ +   P   K    + CC
Sbjct: 187 DSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  225 bits (577), Expect = 4e-77
 Identities = 54/115 (46%), Positives = 77/115 (66%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR++T SYYRGA G ++VYD+T +E++N +  WL +    AS N+  +L GN
Sbjct: 64  WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 123

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 117
           K DL A++ V++  A  FA E  + F+ETSA    NVE+AF+  A  I +++ S 
Sbjct: 124 KKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESG 178

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  225 bits (576), Expect = 6e-77
 Identities = 54/108 (50%), Positives = 75/108 (69%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAG ER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGN
Sbjct: 83  WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL   + V  + A+AFA++ G+ F+ETSA DSTNVE AF  +   I
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  225 bits (576), Expect = 6e-77
 Identities = 56/114 (49%), Positives = 80/114 (70%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  +++S N+  +L+GN
Sbjct: 75  WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGN 134

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116
           K DL + + V  E  +AFA E G+ FMETSAK + NVE+AF+  A  I  ++  
Sbjct: 135 KSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 188

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  224 bits (573), Expect = 9e-77
 Identities = 59/114 (51%), Positives = 85/114 (74%), Gaps = 1/114 (0%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTIT++YYRGA GII+VYD+TD+ +F N+KQW   ++ +A+D    LLVGN
Sbjct: 57  WDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGN 116

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116
           K D+   +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +A  I++++ S
Sbjct: 117 KSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  224 bits (574), Expect = 2e-76
 Identities = 53/116 (45%), Positives = 77/116 (66%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR++T SYYRGA G ++VYD+T +E++N++  WL +    AS N+  +L GN
Sbjct: 79  WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGN 138

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 118
           K DL   + V++  A  FA E  + F+ETSA    NVE+AF+  A +I +++ S  
Sbjct: 139 KKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGE 194

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  225 bits (575), Expect = 2e-76
 Identities = 52/128 (40%), Positives = 80/128 (62%), Gaps = 2/128 (1%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
           WDTAGQERFR++T++++R A G ++++D+T Q+SF NV+ W++++   A  +N + +L+G
Sbjct: 89  WDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIG 148

Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 121
           NK DL   + V+   A+  AD+ GIP+ ETSA    NVE+A   +   I  RM  Q    
Sbjct: 149 NKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM-EQCVEK 207

Query: 122 NARPPTVQ 129
              P TV 
Sbjct: 208 TQIPDTVN 215

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  222 bits (569), Expect = 7e-76
 Identities = 46/118 (38%), Positives = 77/118 (65%), Gaps = 1/118 (0%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
           WDTAG ERFR++T++++R A G ++++D+T+++SF NV+ W++++  +A S+N + +L G
Sbjct: 75  WDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCG 134

Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS 119
           NK DL   + V  E A+  A++ GIP+ ETSA + TN+  A   +   I  RM     
Sbjct: 135 NKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMERSVD 192

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  220 bits (564), Expect = 2e-75
 Identities = 42/110 (38%), Positives = 69/110 (62%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERF  +   YYR ++G I+VYD+TD++SF  VK W+ E+ +   + +   +VGN
Sbjct: 60  WDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGN 119

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112
           K DL   + VS + A+++A+ +G     TSAK +  +E+ F+ +   + +
Sbjct: 120 KIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  222 bits (567), Expect = 3e-75
 Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 1/137 (0%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQE+   +   YY GA G I+ +DVT + +  N+ +W+ E      +    ++  N
Sbjct: 66  WDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCAN 125

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP-SMN 121
           K D+   + +S +            + E SAK + N    F+ +A     R      S  
Sbjct: 126 KIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNV 185

Query: 122 NARPPTVQIKGQPVAQK 138
           N  P  V        + 
Sbjct: 186 NLEPTEVNYDYHSPEES 202

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  220 bits (564), Expect = 3e-75
 Identities = 54/109 (49%), Positives = 73/109 (66%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR +T SYYRGA G ++VYD+T + ++N++  WL +     + N   +L+GN
Sbjct: 69  WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGN 128

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           K DL A + V+YE AK FA+E G+ F+E SAK   NVE AF+  A  I 
Sbjct: 129 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  220 bits (564), Expect = 7e-75
 Identities = 48/145 (33%), Positives = 74/145 (51%), Gaps = 4/145 (2%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKL 58
           WDTAGQERF+++  ++YRGA   ++V+DVT   +F  +  W +E    AS    +N   +
Sbjct: 62  WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 121

Query: 59  LVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 118
           ++GNK DL   +V +         +  IP+ ETSAK++ NVEQAF  +A +   +     
Sbjct: 122 VLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 181

Query: 119 SMNNARPPTVQIKGQPVAQKSGCCS 143
             N    P    K +     +  CS
Sbjct: 182 LYNEFPEPIKLDKNERAKASAESCS 206

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  220 bits (563), Expect = 7e-75
 Identities = 54/126 (42%), Positives = 73/126 (57%), Gaps = 2/126 (1%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDN-VNKLLVG 61
           WDTAGQERFRT+T SYYRGA G+I+VYDVT +++F  +  WLNE++ Y + N +  +LVG
Sbjct: 69  WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVG 128

Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 121
           NK D   N+ V       FA +  + F+E SAK    V+ AF  +   I        S N
Sbjct: 129 NKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESEN 187

Query: 122 NARPPT 127
               P+
Sbjct: 188 QNSGPS 193

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  219 bits (560), Expect = 1e-74
 Identities = 50/115 (43%), Positives = 72/115 (62%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+ ++   YYRGA   IIV+DVT+Q SF   K+W+ E+    + N+   L GN
Sbjct: 66  WDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGN 125

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 117
           K DL   + V+ E A+ +A E G+ FMETSAK +TNV++ F  +A  +     ++
Sbjct: 126 KSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  218 bits (558), Expect = 2e-74
 Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 1/111 (0%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQE F  IT +YYRGA   ++V+  TD+ESF  +  W  ++      ++   LV N
Sbjct: 59  WDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQN 117

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           K DL  +  +  E A+  A  + + F  TS K+  NV + F  +A     +
Sbjct: 118 KIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  217 bits (556), Expect = 4e-74
 Identities = 46/109 (42%), Positives = 70/109 (64%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAG ERFR +   YYRG+   IIVYD+T +E+F+ +K W+ E+ ++   ++   + GN
Sbjct: 60  WDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGN 119

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           KCDLT  + V    AK +AD I   F+ETSAK++ N+ + F+ ++  I 
Sbjct: 120 KCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  217 bits (556), Expect = 4e-74
 Identities = 52/109 (47%), Positives = 73/109 (66%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+ ++   YYRGA   I+VYD+T++ESF   K W+ E+ R AS N+   L GN
Sbjct: 60  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 119

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           K DL   + V ++ A+++AD+  + FMETSAK S NV + FMA+A  + 
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  218 bits (557), Expect = 5e-74
 Identities = 49/117 (41%), Positives = 73/117 (62%), Gaps = 6/117 (5%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR+I  SY+R A G++++YDVT ++SF N+++W++ I+  A + V  +LVGN
Sbjct: 82  WDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGN 141

Query: 63  KCDL------TANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           K D+         K V     +  A   G  F ETSAKD +N+ +A + +A  +K R
Sbjct: 142 KADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKR 198

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  216 bits (553), Expect = 2e-73
 Identities = 46/115 (40%), Positives = 73/115 (63%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERF ++   YYRG+   +IVYD+T Q+SF  +K+W+ E+  +  +N+   + GN
Sbjct: 77  WDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGN 136

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 117
           KCDL+  + V  + AK +A+ IG   +ETSAK++ N+E+ F  ++  I      +
Sbjct: 137 KCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHE 191

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  212 bits (543), Expect = 7e-72
 Identities = 49/114 (42%), Positives = 72/114 (63%), Gaps = 5/114 (4%)

Query: 3   WDTAGQERFR-TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDN-VNKLLV 60
           WDTAGQERFR ++   YYR  H ++ VYD+T+  SF+++  W+ E  ++   N + ++LV
Sbjct: 74  WDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILV 133

Query: 61  GNKCDLTANKVVSYETAKAFADEIGIPFMETSAK---DSTNVEQAFMAMAASIK 111
           GNKCDL +   V  + A+ FAD   +P  ETSAK   D+ +VE  FM +A  +K
Sbjct: 134 GNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  212 bits (541), Expect = 8e-72
 Identities = 45/108 (41%), Positives = 70/108 (64%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR++  SY R +   ++VYD+T+  SF+   +W++++      +V  +LVGN
Sbjct: 68  WDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGN 127

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL+  + VS E  +  A E+ + F+ETSAK   NV+Q F  +AA++
Sbjct: 128 KTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  208 bits (533), Expect = 1e-70
 Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 3/111 (2%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY---ASDNVNKLL 59
           WD  GQ     +   Y  GA G+++VYD+T+ +SF N++ W   + +    +       L
Sbjct: 61  WDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVAL 120

Query: 60  VGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           VGNK DL   + +  E    F  E G      SAK   +V   F  +AA I
Sbjct: 121 VGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  205 bits (523), Expect = 5e-69
 Identities = 47/120 (39%), Positives = 75/120 (62%), Gaps = 6/120 (5%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKL 58
           WDTAGQERF+++  ++YRGA   ++VYDVT+  SF N+K W +E   +A+    +    +
Sbjct: 63  WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFV 122

Query: 59  LVGNKCDL-TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116
           ++GNK D   + K+VS ++A+  A  +G IP   TSAK++ NV+ AF  +A S   +  +
Sbjct: 123 ILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQNQA 182

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  205 bits (523), Expect = 5e-69
 Identities = 44/117 (37%), Positives = 68/117 (58%), Gaps = 6/117 (5%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKL 58
           WDTAGQERFR++ + +YRG+   ++ + V D +SF N+  W  E   YA     ++   +
Sbjct: 61  WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 120

Query: 59  LVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIKDRM 114
           ++GNK D++  + VS E A+A+  + G  P+ ETSAKD+TNV  AF      +    
Sbjct: 121 ILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  204 bits (521), Expect = 4e-68
 Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 4/137 (2%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQE+F  +   YY  A   II++DVT + ++ NV  W  ++ R   +N+  +L GN
Sbjct: 69  WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGN 127

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           K D+   KV     +  F  +  + + + SAK + N E+ F+ +A  +      +     
Sbjct: 128 KVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 185

Query: 123 A-RPPTVQIKGQPVAQK 138
           A  PP V +     AQ 
Sbjct: 186 ALAPPEVVMDPALAAQY 202

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  201 bits (513), Expect = 3e-67
 Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 4/141 (2%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVG 61
            DTAGQE +  I  +Y+R   G + V+ +T+ ESF     +  +I R    +NV  LLVG
Sbjct: 67  LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 126

Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 121
           NK DL   + VS E AK  A++  + ++ETSAK   NV++ F  +   I+ R        
Sbjct: 127 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEK 186

Query: 122 NARPPTVQIKGQPVAQKSGCC 142
           N +      K      +  CC
Sbjct: 187 NGKKKR---KSLAKRIRERCC 204

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  200 bits (510), Expect = 1e-66
 Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 5/125 (4%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY---ASDNVNKLL 59
            DTAG + ++   S Y+ G +  I+V+DV+  ESF + K W   +          +  +L
Sbjct: 78  LDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVL 137

Query: 60  VGNKCDLTANK-VVSYETAKAFADEIGIPFMETSAK-DSTNVEQAFMAMAASIKDRMASQ 117
           V NK DL   +  V  + A+ +A    + F + SA     + +  F+++A +       +
Sbjct: 138 VANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYEDK 197

Query: 118 PSMNN 122
            +   
Sbjct: 198 VAAFQ 202

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  199 bits (508), Expect = 2e-66
 Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 3/114 (2%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+ +I   YYRGA   I+V+D+++  + +  K W+N++    S N   +LV N
Sbjct: 98  WDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK--ISSNYIIILVAN 155

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116
           K D      V     + +A +  + F++TSAK  TN++  F  +A  I   + +
Sbjct: 156 KIDK-NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNIIN 208

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  195 bits (497), Expect = 8e-65
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 2/119 (1%)

Query: 3   WDTAGQERFR-TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLV 60
           +D   Q      +     +     +IV+ VTD+ SF+ V + L  +       ++  +LV
Sbjct: 77  YDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILV 136

Query: 61  GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS 119
           GNK DL  ++ VS E  +  A  +    +ETSA    N  + F      I+ R     +
Sbjct: 137 GNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRNHA 195

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  192 bits (491), Expect = 3e-64
 Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 2/113 (1%)

Query: 3   WDTAGQERFR-TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLV 60
           +D   Q      +     +     +IV+ VTD+ SF+ V + L  +       ++  +LV
Sbjct: 56  YDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILV 115

Query: 61  GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           GNK DL  ++ VS E  +  A  +    +ETSA    N  + F      I+ R
Sbjct: 116 GNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  192 bits (491), Expect = 3e-64
 Identities = 44/112 (39%), Positives = 63/112 (56%), Gaps = 1/112 (0%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVG 61
            DTAGQE +  I  +Y+R   G + V+ +T+ ESF     +  +I R    +NV  LLVG
Sbjct: 57  LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 116

Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           NK DL   + VS E AK  AD+  + ++ETSAK   NV++ F  +   I+ R
Sbjct: 117 NKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  192 bits (490), Expect = 8e-64
 Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 1/116 (0%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVG 61
            DTAGQE +  I  +Y+R   G + V+ +T+ ESF     +  +I R    +NV  LLVG
Sbjct: 71  LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 130

Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 117
           NK DL   + VS E AK  A++  + ++ETSAK   NV++ F  +   I+ R    
Sbjct: 131 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMED 186

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  191 bits (487), Expect = 9e-64
 Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 1/112 (0%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVG 61
           +D   Q+  R +           +IVY VTD+ SF    +   ++ R   +D+V  +LVG
Sbjct: 54  YDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVG 113

Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           NK DL  ++ VS +  +A A      F+ETSA    NV+  F  +   I+ R
Sbjct: 114 NKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  191 bits (488), Expect = 1e-63
 Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 7/126 (5%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVG 61
            DTAGQE F  +   Y R  HG ++V+ + D++SFN V +   +I R    D+   +LVG
Sbjct: 62  LDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG 121

Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 121
           NK DL + + V    A AF     + + E SAK   NV++AF  +  +++          
Sbjct: 122 NKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY------QE 175

Query: 122 NARPPT 127
              PP+
Sbjct: 176 QELPPS 181

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  191 bits (487), Expect = 1e-63
 Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 2/116 (1%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA--SDNVNKLLV 60
            DT G  +F  +        H  I+VY +T ++S   +K    +I       +++  +LV
Sbjct: 56  TDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLV 115

Query: 61  GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116
           GNKCD + ++ V    A+A A      FMETSAK + NV++ F  +    K R  S
Sbjct: 116 GNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVS 171

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  190 bits (485), Expect = 5e-63
 Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY--ASDNVNKLLV 60
            DT G  +F  +        H  I+V+ VT ++S   +      I +   + +++  +LV
Sbjct: 61  TDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLV 120

Query: 61  GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSM 120
           GNKCD T  + V    A+A A E    FMETSAK + NV++ F  +      R  S    
Sbjct: 121 GNKCDET-QREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNID 179

Query: 121 NNARPPTVQIKGQPVAQKSGCCS 143
                     K +   +  G C+
Sbjct: 180 GKRSG-----KQKRTDRVKGKCT 197

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  189 bits (483), Expect = 6e-63
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 1/122 (0%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVG 61
            DTAGQ+ +     +Y    +G I+VY VT  +SF  +K    ++        +  +LVG
Sbjct: 59  VDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVG 118

Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 121
           NK DL   +V+SYE  KA A+     F+E+SAK++      F  +    +    +     
Sbjct: 119 NKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGACSQGK 178

Query: 122 NA 123
           ++
Sbjct: 179 SS 180

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  188 bits (479), Expect = 5e-62
 Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 1/117 (0%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVG 61
            DTAGQ+ +  +  S+  G HG ++VY VT   SF  ++    ++   +    V  +LVG
Sbjct: 77  VDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVG 136

Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 118
           NK DL+  + V     K  A+  G  FME+SA+++   +  F  +   I     S  
Sbjct: 137 NKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENSYG 193

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  187 bits (477), Expect = 6e-62
 Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 12/142 (8%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVG
Sbjct: 57  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVG 116

Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMN 121
           NKCDL  ++ V  + A+  A   GIPF+ETSAK    V+ AF  +   I+          
Sbjct: 117 NKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDG 175

Query: 122 NARPPTVQIKGQPVAQKSGCCS 143
             +            +    C 
Sbjct: 176 KKKKK----------KSKTKCV 187

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  186 bits (476), Expect = 6e-62
 Identities = 42/110 (38%), Positives = 64/110 (58%), Gaps = 1/110 (0%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVG 61
            DTAG E+F ++   Y +   G I+VY + +Q+SF ++K   ++I R    + V  +LVG
Sbjct: 56  LDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVG 115

Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NK DL + + VS    +A A+E G PFMETSAK  T V++ F  +   + 
Sbjct: 116 NKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  185 bits (472), Expect = 3e-61
 Identities = 42/113 (37%), Positives = 62/113 (54%), Gaps = 2/113 (1%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE F  +   Y R   G +IVY VTD+ SF +V ++   I R    ++   +LV 
Sbjct: 71  LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130

Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDST-NVEQAFMAMAASIKDR 113
           NK DL   + V+ +  K  A +  IP++ETSAKD   NV++ F  +   I+ +
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  184 bits (469), Expect = 8e-61
 Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 3/118 (2%)

Query: 3   WDTAGQERFRTITS--SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLL 59
            DT   E+     S  S  +G    +IVY + D+ SF +  +   ++ R + +D+V  +L
Sbjct: 57  VDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIIL 116

Query: 60  VGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 117
           VGNK DL   + VS E  +A A      F+ETSA    NV + F  +   ++ R    
Sbjct: 117 VGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRDS 174

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  184 bits (469), Expect = 1e-60
 Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 2/118 (1%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   SD+V  +LVG
Sbjct: 74  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVG 133

Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS 119
           NKCDL   + V  + A   A   GIPF+ETSAK    VE AF  +   I+     + +
Sbjct: 134 NKCDLP-TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLN 190

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  182 bits (465), Expect = 3e-60
 Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   SD+V  +LVG
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115

Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NK DL   + V    A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 116 NKSDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  183 bits (467), Expect = 3e-60
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 3/117 (2%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVG 61
           W+  G+  +  +     +     +IVY +TD+ SF    +   ++ R   ++++  +LVG
Sbjct: 95  WENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 152

Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 118
           NK DL   + VS    +A A      F+ETSA    NV++ F  +   ++ R  S+ 
Sbjct: 153 NKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 209

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  179 bits (456), Expect = 5e-59
 Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 2/111 (1%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVG 61
            DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVG
Sbjct: 56  LDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVG 115

Query: 62  NKCDLTANKVVSYETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NKCDL   +VV  E  +  A +     F+E+SAK   NV + F  +   I 
Sbjct: 116 NKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  176 bits (448), Expect = 2e-57
 Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 3/118 (2%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVG 61
           W+  G+  +  +     +     +IVY +TD+ SF    +   ++ R   ++++  +LVG
Sbjct: 64  WENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVG 121

Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS 119
           NK DL   + VS    +A A      F+ETSA    NV++ F  +   ++ R  S+  
Sbjct: 122 NKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEK 179

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  175 bits (447), Expect = 3e-57
 Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 3/117 (2%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVG 61
            DTAGQE        + R   G ++VYD+TD+ SF  V    N +D      NV  +LVG
Sbjct: 81  LDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVG 139

Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDS-TNVEQAFMAMAASIKDRMASQ 117
           NK DL  ++ VS E  +  A E+   F E SA     N+ + F  +   ++ R   Q
Sbjct: 140 NKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMVQ 196

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  163 bits (416), Expect = 1e-52
 Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 9/116 (7%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
            D  G    +     +      ++ V+ + D+ SF  V  +   +  +  +  V  +LVG
Sbjct: 72  RDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVG 126

Query: 62  NKCDLTAN--KVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIKDRM 114
            +  ++A   +V+    A+  + ++    + ET A    NVE+ F  +A  +    
Sbjct: 127 TQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALR 182

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  161 bits (411), Expect = 5e-52
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 5/113 (4%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD---NVNKLL 59
            DTA  +  R     Y   AH  ++VY V  ++SF++   +L  +  +A +   ++  LL
Sbjct: 74  MDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALL 132

Query: 60  VGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDS-TNVEQAFMAMAASIK 111
           +GNK D+   + V+     A A   G  F E SA     +V+  F       +
Sbjct: 133 LGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  159 bits (403), Expect = 5e-51
 Identities = 45/114 (39%), Positives = 63/114 (55%), Gaps = 3/114 (2%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERF ++   YYR A   ++VYDVT  +SF   + W+ E+   AS ++   LVGN
Sbjct: 57  WDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGN 116

Query: 63  KCDLT---ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           K D       + V+ E  +  A+E G+ F ETSAK   NV   F+ +   I  +
Sbjct: 117 KIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  158 bits (402), Expect = 1e-50
 Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 6/120 (5%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES-FNNVKQWLNEIDRYASDNVNKLLVG 61
           WD AG+E F +    +       + VYD++  ++  + +K WL  I   AS +   +LVG
Sbjct: 61  WDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSP-VILVG 119

Query: 62  NKCDLTANK---VVSYETAKAFADEIGIPF-METSAKDSTNVEQAFMAMAASIKDRMASQ 117
              D++  K       +  K   ++ G P   +    ++T    A   +  +I +   + 
Sbjct: 120 THLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF 179

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  160 bits (406), Expect = 9e-48
 Identities = 24/141 (17%), Positives = 52/141 (36%), Gaps = 8/141 (5%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WD  GQE        +   +   +++ D     + +N   WL  I++Y   +   ++V N
Sbjct: 103 WDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYGGKSP-VIVVMN 158

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNN 122
           K D   +  +  +        I   F   S K+   VE    ++ +++   +        
Sbjct: 159 KIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAV---LHPDSIYGT 215

Query: 123 ARPPT-VQIKGQPVAQKSGCC 142
              P+ +++K + V   +   
Sbjct: 216 PLAPSWIKVKEKLVEATTAQR 236

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  148 bits (375), Expect = 1e-46
 Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 11/121 (9%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY---ASDNVNKLL 59
            + AG    +     +   A  +I V+ + D+ SF  V +   ++          +   L
Sbjct: 59  REEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALAL 113

Query: 60  VG--NKCDLTANKVVSYETAKAF-ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116
           VG  ++   ++ +VV    A+A  AD     + ET A    NV++ F  +A  +      
Sbjct: 114 VGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQ 173

Query: 117 Q 117
           Q
Sbjct: 174 Q 174

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  122 bits (308), Expect = 2e-36
 Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 6/116 (5%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y  +  +++ + V ++ SF+N+  +W  EI  Y  D    +LVG
Sbjct: 76  WDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVG 134

Query: 62  NKCDL--TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF-MAMAASIKDR 113
            K DL    +  V+ +       ++G + ++E S+     + + F  ++     ++
Sbjct: 135 LKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNK 190

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  119 bits (301), Expect = 2e-35
 Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 18/128 (14%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    YRGA   I+ + +  + S+ NV  +W+ E+  YA   V  +LVG
Sbjct: 61  WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVG 119

Query: 62  NKCDL----------TANKVVSYETAKAFADEIGIP-FMETSAKDSTNVEQAFMAMAASI 110
            K DL               ++    +     IG P ++E S+K   NV+  F A     
Sbjct: 120 TKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAI--- 176

Query: 111 KDRMASQP 118
             R+  QP
Sbjct: 177 --RVVLQP 182

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  118 bits (297), Expect = 1e-34
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 16/130 (12%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y     I++ + V   +S  N+  +W+ E+  +   NV  +LV 
Sbjct: 78  WDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVA 136

Query: 62  NKCDL------------TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
           NK DL               + V  +  +A A  I    ++E SAK    V + F  A  
Sbjct: 137 NKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATR 196

Query: 108 ASIKDRMASQ 117
           A+++ R  SQ
Sbjct: 197 AALQKRYGSQ 206

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  117 bits (294), Expect = 6e-34
 Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 16/126 (12%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQ+ +  +   +Y  A  +++ +DVT   SF+N+  +W  E++ +    V  ++VG
Sbjct: 87  WDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVG 145

Query: 62  NKCDL------------TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
            K DL               + V+Y   +  A  +G + ++E SA+   NV   F  A  
Sbjct: 146 CKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205

Query: 108 ASIKDR 113
            ++  R
Sbjct: 206 VALSSR 211

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  114 bits (286), Expect = 7e-33
 Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 16/124 (12%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y     I++ + +   +S  N+  +W  E+  +   NV  +LVG
Sbjct: 78  WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVG 136

Query: 62  NKCDL------------TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
           NK DL               + V  E  +  A+ I    ++E SAK    V + F MA  
Sbjct: 137 NKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196

Query: 108 ASIK 111
           A ++
Sbjct: 197 AGLQ 200

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  115 bits (289), Expect = 8e-33
 Identities = 23/148 (15%), Positives = 48/148 (32%), Gaps = 41/148 (27%)

Query: 4   DTAGQERFRTITSSYYRGA-------------------------------------HGII 26
           D   Q    T    Y + A                                      G +
Sbjct: 108 DQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFL 167

Query: 27  IVYDVT--DQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKAFADE 83
           +  DV+     +F++  ++++ +    +      ++V  KCD    + +      A + +
Sbjct: 168 LGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKK 227

Query: 84  IGIPFMETSAKDSTNVEQAFMAMAASIK 111
             +  +ETSA+ + NV+ AF  +   I 
Sbjct: 228 -NLQVVETSARSNVNVDLAFSTLVQLID 254

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  113 bits (285), Expect = 1e-32
 Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 23/151 (15%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    YRGA   ++ + +  + S+ NV  +W+ E+ R+ + NV  +LVG
Sbjct: 62  WDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRF-APNVPIVLVG 120

Query: 62  NKCDLTAN--------KVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF-MAMAASIK 111
            K DL  +         V++    +    +IG   ++E S+K   NV+  F  A+   ++
Sbjct: 121 TKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 180

Query: 112 DRMASQPSMNNARPPTVQIKGQPVAQKSGCC 142
                +                   ++SGC 
Sbjct: 181 PPRRKEVPRRRKNH-----------RRSGCS 200

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  109 bits (275), Expect = 3e-31
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 17/125 (13%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDT+G   +  +    Y  +  ++I +D++  E+ ++V  +W  EI  +   N   LLVG
Sbjct: 81  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVG 139

Query: 62  NKCDL------------TANKVVSYETAKAFADEIG-IPFMETSAKDSTN-VEQAF-MAM 106
            K DL                 VSY+     A +IG   ++E SA  S N V   F +A 
Sbjct: 140 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVAT 199

Query: 107 AASIK 111
            A + 
Sbjct: 200 LACVN 204

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  108 bits (272), Expect = 6e-31
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 17/125 (13%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDT+G   +  +    Y  +  ++I +D++  E+ ++V  +W  EI  +   N   LLVG
Sbjct: 60  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVG 118

Query: 62  NKCDL------------TANKVVSYETAKAFADEIG-IPFMETSAKDSTN-VEQAF-MAM 106
            K DL                 VSY+     A +IG   ++E SA  S N V   F +A 
Sbjct: 119 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVAT 178

Query: 107 AASIK 111
            A + 
Sbjct: 179 LACVN 183

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  106 bits (266), Expect = 7e-30
 Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 15/115 (13%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y      +I + +    SF NV+ +W  E+  +   N   +LVG
Sbjct: 83  WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVG 141

Query: 62  NKCDL------------TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL                 ++Y    A A EIG + ++E SA     ++  F
Sbjct: 142 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  103 bits (259), Expect = 5e-29
 Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 15/115 (13%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           WDTAGQE +  +    Y      +I + +    SF NV+ +W  E+  +   N   +LVG
Sbjct: 58  WDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVG 116

Query: 62  NKCDL------------TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            K DL                 ++Y    A A EIG + ++E SA     ++  F
Sbjct: 117 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  100 bits (252), Expect = 9e-28
 Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 15/115 (13%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
            DTAGQ+ F  +    Y      ++ + V    SF NV  +W+ EI  +       +LVG
Sbjct: 73  CDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH-CPKAPIILVG 131

Query: 62  NKCDL------------TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            + DL               K V  E AK  A+EI    ++E SA    N+++ F
Sbjct: 132 TQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 99.2 bits (247), Expect = 5e-27
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 16/116 (13%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVG 61
           WDT+G   +  +    Y  +  +++ +D++  E+ ++  K+W  EI  Y   +   LL+G
Sbjct: 80  WDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIG 138

Query: 62  NKCDL------------TANKVVSYETAKAFADEIG-IPFMETSAKDS-TNVEQAF 103
            K DL                 +SYE   A A ++G   ++E SA  S  ++   F
Sbjct: 139 CKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIF 194

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 96.8 bits (241), Expect = 3e-26
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 15/115 (13%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVG 61
           +DTAGQE +  +    Y      +I + V +  SF NVK +W+ E+  Y + NV  LL+G
Sbjct: 71  YDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIG 129

Query: 62  NKCDL------------TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF 103
            + DL               K +  E  +  A EIG   ++E SA     ++  F
Sbjct: 130 TQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 88.9 bits (220), Expect = 3e-22
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 16/124 (12%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVG 61
           WDTAG E +  +    Y      +I + +    SF++V+  W  E+  +   N   +LVG
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVG 266

Query: 62  NKCDL------------TANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAF-MAMA 107
            K DL                 ++Y    A A EIG + ++E SA     ++  F  A+ 
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 326

Query: 108 ASIK 111
           A + 
Sbjct: 327 AVLC 330

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 77.5 bits (191), Expect = 8e-19
 Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 6/119 (5%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK----L 58
           +   GQ  +        RG  GI+ V D        N +   N  +  A   +      +
Sbjct: 79  YTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPI 138

Query: 59  LVG-NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116
           ++  NK DL  + +           E   P +E  A +   V +    ++  +  R+A 
Sbjct: 139 VIQVNKRDL-PDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVAG 196

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 64.6 bits (158), Expect = 6e-14
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 10/123 (8%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK--LLV 60
           WD  GQE  R+  ++YY     +I+V D TD+E  +  ++ L ++   A +++ K  LL+
Sbjct: 65  WDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM--LAHEDLRKAGLLI 122

Query: 61  -GNKCDLTANKVVSYETAKAFA-DEIG---IPFMETSAKDSTNVEQAFMAMAASIKDRMA 115
             NK D+    +   E ++      I           A     + Q    M + +K R+ 
Sbjct: 123 FANKQDV-KECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRLE 181

Query: 116 SQP 118
              
Sbjct: 182 HHH 184

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 62.7 bits (153), Expect = 3e-13
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 8/118 (6%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI---DRYASDNVNKLL 59
           +D +GQ R+R +   YY+    II V D +D+      K+ L+ +          +  L 
Sbjct: 72  FDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILF 131

Query: 60  VGNKCDLTANKVVSYETAKAFA-DEIG---IPFMETSAKDSTNVEQAFMAMAASIKDR 113
             NK DL  + V S + ++    + I         + A     +++    +   I+  
Sbjct: 132 FANKMDL-RDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQTV 188

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 61.0 bits (149), Expect = 8e-13
 Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 12/119 (10%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LL 59
           WD  GQ++ R +   Y++   G+I V D  D+E  N  ++   E+ R  +++  +   LL
Sbjct: 49  WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDELRDAVLL 105

Query: 60  V-GNKCDLTANKVVSYETAKAFA-DEIG---IPFMETSAKDSTNVEQAFMAMAASIKDR 113
           V  NK DL  N + + E         +         T A     + +    ++  ++++
Sbjct: 106 VFANKQDL-PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 163

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 61.5 bits (150), Expect = 9e-13
 Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 10/118 (8%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK--LLV 60
           WD  GQ++ R +   Y++   G+I V D  D+E        L ++     D +    LLV
Sbjct: 78  WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKM--LQEDELRDAVLLV 135

Query: 61  -GNKCDLTANKVVSYETAKAFA-DEIG---IPFMETSAKDSTNVEQAFMAMAASIKDR 113
             NK D+  N +   E         +         T A   T +      ++  +  R
Sbjct: 136 FANKQDM-PNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 60.3 bits (147), Expect = 2e-12
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 12/119 (10%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LL 59
           WD  G    R     YY     +I V D  D++     K    E+     +   +   L+
Sbjct: 56  WDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS---ELVAMLEEEELRKAILV 112

Query: 60  V-GNKCDLTANKVVSYETAKAFA-DEIG---IPFMETSAKDSTNVEQAFMAMAASIKDR 113
           V  NK D+    + S E A +     +        +TSA   T +++A   +  ++K R
Sbjct: 113 VFANKQDM-EQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 170

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 60.0 bits (146), Expect = 3e-12
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 10/118 (8%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK--LLV 60
           WD  GQ   R     YY     +I V D TD++  +   + L+ +     + +    LLV
Sbjct: 67  WDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLM--LQEEELQDAALLV 124

Query: 61  -GNKCDLTANKVVSYETAKAFA-DEIG---IPFMETSAKDSTNVEQAFMAMAASIKDR 113
             NK D     + + E +K     E+       + +SA     + +    +   IK+ 
Sbjct: 125 FANKQDQ-PGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 59.6 bits (145), Expect = 4e-12
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 12/120 (10%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LL 59
           WD  GQ+  R+   +Y+    G+I V D  D++   + ++   E+     +       LL
Sbjct: 67  WDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQR---ELQSLLVEERLAGATLL 123

Query: 60  V-GNKCDLTANKVVSYETAKAFA-DEIG---IPFMETSAKDSTNVEQAFMAMAASIKDRM 114
           +  NK DL    +      +A   D I          SA    ++      +   I  R+
Sbjct: 124 IFANKQDL-PGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSRV 182

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 59.5 bits (145), Expect = 4e-12
 Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 10/118 (8%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK--LLV 60
           WD  GQ + R    SY+     +I V D  D++ F    Q L E+     + ++   +L+
Sbjct: 65  WDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTEL--LEEEKLSCVPVLI 122

Query: 61  -GNKCDLTANKVVSYETAKAFA-DEIG---IPFMETSAKDSTNVEQAFMAMAASIKDR 113
             NK DL      + E A+      I          SA     V+     +  ++  +
Sbjct: 123 FANKQDL-LTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 179

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 59.5 bits (145), Expect = 4e-12
 Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 10/118 (8%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVG 61
           WD  GQ RFR++   Y RG   I+ + D  DQE     K  L+ +        +  L++G
Sbjct: 72  WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLG 131

Query: 62  NKCDLTANKVVSYETAKAFA-DEIG-----IPFMETSAKDSTNVEQAFMAMAASIKDR 113
           NK DL    +   E  +      I            S K+  N++     +    K R
Sbjct: 132 NKRDL-PGALDEKELIEKMNLSAIQDREICC--YSISCKEKDNIDITLQWLIQHSKSR 186

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 59.2 bits (144), Expect = 6e-12
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 12/119 (10%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LL 59
           WD  GQ   R     Y+     +I V D TD++     K    E+     ++  +   LL
Sbjct: 71  WDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKH---ELYALLDEDELRKSLLL 127

Query: 60  V-GNKCDLTANKVVSYETAKAFA-DEIG---IPFMETSAKDSTNVEQAFMAMAASIKDR 113
           +  NK DL  +     E A+      I       +++S+K    + +    +   ++++
Sbjct: 128 IFANKQDL-PDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 10/115 (8%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK--LLV 60
           WD  GQE  R+  ++YY     +I+V D TD+E  +  ++ L ++   A +++ K  LL+
Sbjct: 70  WDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM--LAHEDLRKAGLLI 127

Query: 61  -GNKCDLTANKVVSYETAKAFA-DEIG---IPFMETSAKDSTNVEQAFMAMAASI 110
             NK D+    +   E ++      I           A     + Q    M + +
Sbjct: 128 FANKQDV-KECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 52.7 bits (126), Expect = 2e-09
 Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 18/117 (15%)

Query: 3   WDTAGQERFRTITS---SYYRGAHGIIIVYDVTDQ--ESFNNVKQWLNEIDRYASDNVNK 57
           WD  GQ  F   T      +RG   +I V D  D   E+   +   +++  +  + ++N 
Sbjct: 74  WDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNF 132

Query: 58  LLVGNKCDLTAN-----------KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAF 103
            +  +K D  ++           +  + + A A  +++ + F  TS  D + + +AF
Sbjct: 133 EVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHS-IFEAF 188

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LL 59
           +D  G  + R +  +Y    +GI+ + D  D E     K+   E+D   +D       +L
Sbjct: 74  FDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKE---ELDSLMTDETIANVPIL 130

Query: 60  V-GNKCDL 66
           + GNK D 
Sbjct: 131 ILGNKIDR 138

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 51.8 bits (125), Expect = 3e-09
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LL 59
           +D  G  + R +   Y+   +GI+ + D  D E F+  +    E+D   +    K    +
Sbjct: 72  FDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARV---ELDALFNIAELKDVPFV 128

Query: 60  V-GNKCDL 66
           + GNK D 
Sbjct: 129 ILGNKIDA 136

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 51.8 bits (124), Expect = 7e-09
 Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 12/119 (10%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK---LL 59
           WD  GQ++ R +   Y++   G+I V D  D+E  N  ++   E+ R  +++  +   LL
Sbjct: 214 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE---ELMRMLAEDELRDAVLL 270

Query: 60  V-GNKCDLTANKVVSYETAKAFA-DEIG---IPFMETSAKDSTNVEQAFMAMAASIKDR 113
           V  NK DL  N + + E         +         T A     + +    ++  ++++
Sbjct: 271 VFANKQDL-PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 328

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 48.6 bits (116), Expect = 6e-08
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 3   WDTAGQERFRTITSSYYR----GAHGIIIVYD-VTDQESFNNVKQWLNEI----DRYASD 53
            D  G  + R   S Y +       G+I + D   D +      ++L +I    +    +
Sbjct: 96  VDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCEN 155

Query: 54  NVNKLLVGNKCDL 66
            ++ L+  NK +L
Sbjct: 156 GIDILIACNKSEL 168

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 48.2 bits (115), Expect = 8e-08
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 3   WDTAGQERFRTITSSYY----RGAHGIIIVYD-VTDQESFNNVKQWLNEI----DRYASD 53
            D  G  + R   S Y     +   G+I + D   D +      ++L +I    +    +
Sbjct: 60  VDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCEN 119

Query: 54  NVNKLLVGNKCDL 66
            ++ L+  NK +L
Sbjct: 120 GIDILIACNKSEL 132

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 47.3 bits (112), Expect = 3e-07
 Identities = 22/136 (16%), Positives = 46/136 (33%), Gaps = 20/136 (14%)

Query: 3   WDTAGQERF-----RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI--DRYASDNV 55
           WD  GQ+ F            ++    +I V+DV   E   +++ +   +   R  S + 
Sbjct: 57  WDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDA 116

Query: 56  NKLLVGNKCDLTANKVVS------YETAKAFADEIGIP---FMETSAKDSTNVEQAFMAM 106
              ++ +K DL              +     + E G P      TS  D +     + A 
Sbjct: 117 KIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESL----YKAW 172

Query: 107 AASIKDRMASQPSMNN 122
           +  +   + +  +  +
Sbjct: 173 SQIVCSLIPNMSNHQS 188

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 45.9 bits (109), Expect = 5e-07
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 3   WDTAGQERFR-TITSSYYRGAHGIIIVYDVTD-QESFNNVKQWLNEI--DRYASDNVNKL 58
            D  G E  R  +   +   A  ++ V D    Q    +V ++L ++  D  A  N   L
Sbjct: 59  IDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSL 118

Query: 59  LV-GNKCDL 66
           L+  NK D+
Sbjct: 119 LIACNKQDI 127

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 16/99 (16%), Positives = 45/99 (45%), Gaps = 8/99 (8%)

Query: 25  IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK--LLVGNKCDLTANKVVSYETAKAFAD 82
           II ++D ++   F  +++ ++  +    +  +   L+V NK D+   + +  +  + F  
Sbjct: 250 IIYIFDPSEHCGFP-LEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENI--KRLEKFVK 306

Query: 83  EIGIPFMETSAKDSTNVEQ---AFMAMAASIKDRMASQP 118
           E G+  ++ SA   T ++      +     + +++A + 
Sbjct: 307 EKGLNPIKISALKGTGIDLVKEEIIKTLRPLAEKVAREK 345

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 15/111 (13%), Positives = 39/111 (35%), Gaps = 17/111 (15%)

Query: 3   WDTAGQERFR---TITSSYYRGAHGIIIVYDVTDQ--ESFNNVKQWLNEIDRYASDNVNK 57
            +  GQ  +      +   ++    ++ V D  D+   +  N+   +    +  + ++N 
Sbjct: 51  MELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINI 109

Query: 58  LLVGNKCDLTAN-----------KVVSYETAKAFADEIGIPFMETSAKDST 97
            ++ +K D  +            +    E  +   D + + F  TS  D +
Sbjct: 110 EVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDHS 160

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 8/84 (9%)

Query: 25  IIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK--LLVGNKCDLTANKVVSYETA---KA 79
           I+ + D+++Q      +Q +N      S   NK  ++  NK D      +S +     K 
Sbjct: 112 ILFIIDISEQCGLTIKEQ-INLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQ 170

Query: 80  FADEI--GIPFMETSAKDSTNVEQ 101
             D +   I F   S      VEQ
Sbjct: 171 ILDNVKNPIKFSSFSTLTGVGVEQ 194

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 14/106 (13%), Positives = 32/106 (30%), Gaps = 8/106 (7%)

Query: 22  AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA 81
           A  I+ + D+  +   + + +       +       L V NK D  AN            
Sbjct: 313 ADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALIRAIADGT 370

Query: 82  DEIGIPFMETSAKDSTNV---EQAFMAMAASIKDRMASQPSMNNAR 124
                  +  SA +   +   +Q    +  ++     +   + + R
Sbjct: 371 GT---EVIGISALNGDGIDTLKQHMGDLVKNLDKLHEASVLVTSLR 413

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 12/98 (12%)

Query: 22  AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA 81
           A  ++ + D T  ++  +  +   E        +   +V NK D+T   +   E      
Sbjct: 84  ADRVLFMVDGTTTDA-VDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVN---- 138

Query: 82  DEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS 119
              G   +  SA+    V+     +   +K  M    +
Sbjct: 139 ---GHALIRLSARTGEGVDV----LRNHLKQSMGFDTN 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	144
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.95
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.94
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.93
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.93
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.92
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.92
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.92
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.92
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.92
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.92
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.92
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.92
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.92
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.92
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.91
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.91
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.91
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.91
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.91
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.91
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.91
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.91
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.91
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.91
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.91
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.91
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.91
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.91
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.91
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.91
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.9
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.9
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.9
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.9
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.9
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.9
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.9
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.9
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.9
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.9
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.9
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.9
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.9
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.9
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.9
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.9
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.89
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.89
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.89
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.89
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.89
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.89
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.89
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.89
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.89
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.89
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.89
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.89
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.89
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.89
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.89
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.89
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.89
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.88
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.88
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.88
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.88
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.88
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.88
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.88
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.88
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.88
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.88
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.88
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.87
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.87
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.87
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.87
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.87
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.87
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.86
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.86
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.86
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.86
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.86
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.86
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.85
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.85
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.85
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.84
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.84
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.84
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.84
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.84
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.84
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.83
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.73
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.82
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.82
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.82
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.81
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.81
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.81
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.81
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.8
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.8
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.8
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.78
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.77
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.77
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.77
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.77
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.76
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.76
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.75
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.74
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.72
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.71
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.71
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.7
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.69
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.68
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.68
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.66
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.65
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.65
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.65
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.65
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.65
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.64
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.62
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.62
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.61
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.6
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.6
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.6
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.59
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.59
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.58
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.58
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.58
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.57
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.56
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.55
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.54
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.54
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.53
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.53
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.52
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.52
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.51
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.51
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.51
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.49
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.49
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.49
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.48
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.48
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.46
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.46
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.45
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.44
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.44
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.44
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.4
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.39
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.39
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.36
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.36
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.36
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.35
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.34
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.34
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.3
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.29
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.27
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.26
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.24
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.23
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.22
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.22
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.2
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.2
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.17
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.17
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.16
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.16
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.15
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.15
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.13
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.11
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.05
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.04
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	98.95
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.93
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.92
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.89
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.85
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	98.84
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.8
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	98.78
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.73
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.73
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.68
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.65
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.65
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.64
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.64
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.6
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.55
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.45
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.44
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.43
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.38
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.44
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	97.44
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	96.84
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	96.55
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.18
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.18
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.75
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	95.32
3cwq_A	209	Para family chromosome partitioning protein; alpha	95.02
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	94.91
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	93.94
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	93.51
3end_A	307	Light-independent protochlorophyllide reductase ir	92.98
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	91.96
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	91.96
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	91.64
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	91.38
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	90.31
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	89.71
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	89.27
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	89.2
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	88.77
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	87.17
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	86.09
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	85.55
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	83.91
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	83.55
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	83.42
2xxa_A	433	Signal recognition particle protein; protein trans	82.65
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	82.24
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	82.17
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	81.34

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=1.9e-34  Score=200.08  Aligned_cols=116  Identities=38%  Similarity=0.645  Sum_probs=105.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||+|+++|..+++.|+++++++++|||++++.+|+.+..|+..+......++|++|||||.|+...+.++.+++..+
T Consensus        65 ~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~  144 (216)
T 4dkx_A           65 QLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERK  144 (216)
T ss_dssp             EEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhH
Confidence            58999999999999999999999999999999999999999999999887777899999999999987788999999999


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS  116 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~  116 (144)
                      ++.++++++++||++|.||+++|+.|++.+......
T Consensus       145 a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~~~~  180 (216)
T 4dkx_A          145 AKELNVMFIETSAKAGYNVKQLFRRVAAALPGMEST  180 (216)
T ss_dssp             HHHHTCEEEEEBTTTTBSHHHHHHHHHHHC------
T ss_pred             HHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhhhcc
Confidence            999999999999999999999999999988654333

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.95  E-value=8.4e-28  Score=164.58  Aligned_cols=114  Identities=73%  Similarity=1.124  Sum_probs=104.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||||+++|..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+...+.+..+++..+
T Consensus        60 ~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  139 (206)
T 2bcg_Y           60 QIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEF  139 (206)
T ss_dssp             EEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred             EEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHH
Confidence            48999999999999999999999999999999999999999999999877666799999999999977667778888888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      +...+++++++||++|.|++++|++|...+....
T Consensus       140 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~  173 (206)
T 2bcg_Y          140 ADANKMPFLETSALDSTNVEDAFLTMARQIKESM  173 (206)
T ss_dssp             HHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            8889999999999999999999999999987653

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.94  E-value=1e-26  Score=158.77  Aligned_cols=141  Identities=33%  Similarity=0.536  Sum_probs=104.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      +||||||+++|..++..++.++|++++|||+++..+|..+..|+..+..... ...|+++|+||+|+.....+..+++..
T Consensus        65 ~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  144 (206)
T 2bov_A           65 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN  144 (206)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             EEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHH
Confidence            4899999999999999999999999999999999999999999998877653 468999999999997666677888888


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCCCccccCCCCCCCCCCCcCC
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPSMNNARPPTVQIKGQPVAQKSGCCST  144 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~  144 (144)
                      ++...+++++++||++|.|++++|++|.+.+..............   .+......+++++||++
T Consensus       145 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~Cc~~  206 (206)
T 2bov_A          145 RAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSKEKNGK---KKRKSLAKRIRERCCIL  206 (206)
T ss_dssp             HHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHHHC--------------------------
T ss_pred             HHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHccccccccccCc---ccccchhhccccceecC
Confidence            998899999999999999999999999999976543332222221   11122234456678864

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.93  E-value=2.8e-26  Score=156.81  Aligned_cols=114  Identities=40%  Similarity=0.678  Sum_probs=98.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCcccCHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTANKVVSYET   76 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~   76 (144)
                      +||||||+++|..++..++.++|++|+|||++++.++..+..|+..+.....    ...|+++|+||+|+. ...+..++
T Consensus        60 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~  138 (207)
T 1vg8_A           60 QIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKR  138 (207)
T ss_dssp             EEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHH
T ss_pred             EEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHH
Confidence            4899999999999999999999999999999999999999999888866542    368999999999996 34556777


Q ss_pred             HHHHHH-HcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243           77 AKAFAD-EIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA  115 (144)
Q Consensus        77 ~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~  115 (144)
                      +..++. ..+++++++||++|.|++++|++|.+.+.....
T Consensus       139 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  178 (207)
T 1vg8_A          139 AQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET  178 (207)
T ss_dssp             HHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence            777777 567899999999999999999999999876543

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.9e-25  Score=154.87  Aligned_cols=114  Identities=47%  Similarity=0.775  Sum_probs=100.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||||+++|..++..++.++|++|+|||++++.+|..+..|+..+........|+++|+||+|+...+.+...++..+
T Consensus        65 ~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~  144 (223)
T 3cpj_B           65 QIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTF  144 (223)
T ss_dssp             EEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHH
T ss_pred             EEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHH
Confidence            48999999999999999999999999999999999999999999999877655789999999999976666777888888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      +...+++++++||++|.|++++|++|...+....
T Consensus       145 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  178 (223)
T 3cpj_B          145 AQENQLLFTETSALNSENVDKAFEELINTIYQKV  178 (223)
T ss_dssp             HHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTCC
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            8889999999999999999999999999987543

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.92  E-value=1.1e-24  Score=146.30  Aligned_cols=116  Identities=52%  Similarity=0.919  Sum_probs=91.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||+|+++|..++..++.++|++++|||++++.+|..+..|+..+........|+++|+||+|+...+.+..+++..+
T Consensus        60 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~  139 (183)
T 2fu5_C           60 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKL  139 (183)
T ss_dssp             EEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHH
T ss_pred             EEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHH
Confidence            48999999999999999999999999999999999999999999999877656789999999999977667778888889


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS  116 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~  116 (144)
                      ++..+++++++||++|.|++++|++|...+......
T Consensus       140 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~~  175 (183)
T 2fu5_C          140 ALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK  175 (183)
T ss_dssp             HHHHTCEEEECCC---CCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999998765443

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.92  E-value=4e-24  Score=144.81  Aligned_cols=117  Identities=81%  Similarity=1.233  Sum_probs=106.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||+|++++..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+...+.+...+...+
T Consensus        68 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~  147 (196)
T 3tkl_A           68 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEF  147 (196)
T ss_dssp             EEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred             EEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHH
Confidence            48999999999999999999999999999999999999999999999887766799999999999987777888888899


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccC
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ  117 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~  117 (144)
                      +...+++++++||++|.|++++|++|.+.+.......
T Consensus       148 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~~  184 (196)
T 3tkl_A          148 ADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPG  184 (196)
T ss_dssp             HHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC---
T ss_pred             HHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999998765443

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.92  E-value=2.8e-24  Score=146.89  Aligned_cols=113  Identities=50%  Similarity=0.821  Sum_probs=103.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||+|+++|..++..++.++|++|+|||++++.+|+.+..|+..+........|+++|+||+|+...+.+..+++..+
T Consensus        81 ~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~  160 (201)
T 2hup_A           81 QIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSL  160 (201)
T ss_dssp             EEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHH
Confidence            48999999999999999999999999999999999999999999999877656799999999999976566778888889


Q ss_pred             HHHcCC-cEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           81 ADEIGI-PFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        81 ~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      +...++ +++++||++|.|++++|++|.+.+...
T Consensus       161 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~  194 (201)
T 2hup_A          161 AEHYDILCAIETSAKDSSNVEEAFLRVATELIMR  194 (201)
T ss_dssp             HHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            999998 999999999999999999999998754

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.92  E-value=4e-24  Score=145.83  Aligned_cols=117  Identities=50%  Similarity=0.886  Sum_probs=105.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||||+++|..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+...+.+...++..+
T Consensus        60 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  139 (203)
T 1zbd_A           60 QIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQL  139 (203)
T ss_dssp             EEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHH
T ss_pred             EEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHH
Confidence            48999999999999999999999999999999999999999999998877655789999999999977667778888889


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccC
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ  117 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~  117 (144)
                      +...+++++++||++|.|++++|++|.+.+.......
T Consensus       140 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~  176 (203)
T 1zbd_A          140 ADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSES  176 (203)
T ss_dssp             HHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHHHHHT
T ss_pred             HHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999987665443

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=4e-24  Score=142.91  Aligned_cols=113  Identities=50%  Similarity=0.894  Sum_probs=95.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||||+++|..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+...+.+..++...+
T Consensus        63 ~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  142 (180)
T 2g6b_A           63 QMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKL  142 (180)
T ss_dssp             EEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHH
T ss_pred             EEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHH
Confidence            48999999999999999999999999999999999999999999998877656799999999999987777778888888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      ++..+++++++||++|.|++++|++|.+.+...
T Consensus       143 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  175 (180)
T 2g6b_A          143 AKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR  175 (180)
T ss_dssp             HHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred             HHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            888899999999999999999999999988654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=1e-24  Score=148.04  Aligned_cols=112  Identities=31%  Similarity=0.438  Sum_probs=97.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAK   78 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~   78 (144)
                      +||||||+++|..++..++.++|++++|||++++.++..+..|+..+.....  ...|+++|+||+|+.. ..+...++.
T Consensus        59 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~  137 (199)
T 2gf0_A           59 QITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQ  137 (199)
T ss_dssp             EEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHH
T ss_pred             EEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHH
Confidence            4899999999999999999999999999999999999988888877765432  2589999999999865 455677888


Q ss_pred             HHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           79 AFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        79 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      .++...+++++++||++|.|++++|++|.+.+..+
T Consensus       138 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  172 (199)
T 2gf0_A          138 AVAQEWKCAFMETSAKMNYNVKELFQELLTLETRR  172 (199)
T ss_dssp             HHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred             HHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhhh
Confidence            88888899999999999999999999999887543

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.92  E-value=4.7e-24  Score=143.44  Aligned_cols=115  Identities=34%  Similarity=0.647  Sum_probs=99.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      +||||||++++..++..++.++|++++|||++++.++..+..|+..+..... ...|+++|+||+|+.. ..+..+.+..
T Consensus        55 ~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~  133 (189)
T 4dsu_A           55 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQD  133 (189)
T ss_dssp             EEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHH
T ss_pred             EEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHH
Confidence            4799999999999999999999999999999999999999999988877543 4789999999999864 4556788888


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS  116 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~  116 (144)
                      ++...+++++++||++|.|++++|++|.+.+......
T Consensus       134 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~  170 (189)
T 4dsu_A          134 LARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEK  170 (189)
T ss_dssp             HHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999765443

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=3e-24  Score=145.39  Aligned_cols=114  Identities=49%  Similarity=0.905  Sum_probs=104.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||+|+++|..++..++.++|++++|||++++.+|+.+..|+..+........|+++|+||+|+...+.+...++..+
T Consensus        75 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  154 (191)
T 3dz8_A           75 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLL  154 (191)
T ss_dssp             EEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHH
Confidence            48999999999999999999999999999999999999999999999887766799999999999977667778888889


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      +...+++++++||++|.|++++|++|.+.+.+..
T Consensus       155 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  188 (191)
T 3dz8_A          155 AEQLGFDFFEASAKENISVRQAFERLVDAICDKM  188 (191)
T ss_dssp             HHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             HHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999987653

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.92  E-value=5.4e-24  Score=144.11  Aligned_cols=115  Identities=49%  Similarity=0.812  Sum_probs=104.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||+|+++|..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+...+.+..+++..+
T Consensus        73 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~  152 (191)
T 2a5j_A           73 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAF  152 (191)
T ss_dssp             EEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHH
Confidence            48999999999999999999999999999999999999999999999877666799999999999976666778888889


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA  115 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~  115 (144)
                      +...+++++++||++|.|++++|++|.+.+.+...
T Consensus       153 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  187 (191)
T 2a5j_A          153 AREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQ  187 (191)
T ss_dssp             HHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            98999999999999999999999999999876543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=4.4e-24  Score=146.24  Aligned_cols=114  Identities=47%  Similarity=0.805  Sum_probs=103.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||+|+++|..++..++.++|++++|||++++.+|+.+..|+..+........|+++|+||+|+...+.+..+++..+
T Consensus        78 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~  157 (201)
T 2ew1_A           78 QIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEF  157 (201)
T ss_dssp             EEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHH
T ss_pred             EEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHH
Confidence            48999999999999999999999999999999999999999999998877666789999999999976666778888888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      +...+++++++||++|.|++++|++|...+....
T Consensus       158 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~  191 (201)
T 2ew1_A          158 SEAQDMYYLETSAKESDNVEKLFLDLACRLISEA  191 (201)
T ss_dssp             HHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            8888999999999999999999999999987654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.91  E-value=1e-23  Score=139.21  Aligned_cols=113  Identities=32%  Similarity=0.409  Sum_probs=87.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||+|+++|..++..++.++|++++|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...
T Consensus        52 ~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~  131 (166)
T 3q72_A           52 MVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRA  131 (166)
T ss_dssp             EEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHH
T ss_pred             EEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHH
Confidence            489999999999999999999999999999999999999999998887653 2468999999999998777788888888


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      ++...+++++++||++|.|++++|++|.+.+..+
T Consensus       132 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  165 (166)
T 3q72_A          132 CAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR  165 (166)
T ss_dssp             HHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999988754

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.91  E-value=9.7e-24  Score=141.82  Aligned_cols=117  Identities=46%  Similarity=0.771  Sum_probs=105.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||||+++|..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+...+.+...++..+
T Consensus        62 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  141 (186)
T 2bme_A           62 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRF  141 (186)
T ss_dssp             EEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence            48999999999999999999999999999999999999999999888776656799999999999976566777888888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccC
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ  117 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~  117 (144)
                      +...+++++++||++|.|++++|+++...+.....+.
T Consensus       142 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~  178 (186)
T 2bme_A          142 AQENELMFLETSALTGENVEEAFVQCARKILNKIESG  178 (186)
T ss_dssp             HHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            9899999999999999999999999999988655443

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.91  E-value=1.2e-23  Score=140.76  Aligned_cols=111  Identities=45%  Similarity=0.744  Sum_probs=101.8

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||||+++|..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+...+.+..+++..+
T Consensus        64 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~  143 (181)
T 2efe_B           64 EIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTY  143 (181)
T ss_dssp             EEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred             EEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHH
Confidence            48999999999999999999999999999999999999999999999887656789999999999977677778888889


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +...+++++++||++|.|++++|++|.+.+.
T Consensus       144 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  174 (181)
T 2efe_B          144 AQENGLFFMETSAKTATNVKEIFYEIARRLP  174 (181)
T ss_dssp             HHHTTCEEEECCSSSCTTHHHHHHHHHHTCC
T ss_pred             HHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            9889999999999999999999999988764

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.91  E-value=9.4e-24  Score=145.54  Aligned_cols=119  Identities=26%  Similarity=0.434  Sum_probs=103.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||+|++++..++..++.++|++++|||+++..++..+..|+..+........|+++|+||+|+.....+.......+
T Consensus        64 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  143 (218)
T 4djt_A           64 NVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEV  143 (218)
T ss_dssp             EEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHH
T ss_pred             EEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHH
Confidence            48999999999999999999999999999999999999999999999887666689999999999977667777888888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccCCC
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQPS  119 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~~~  119 (144)
                      +...+++++++||++|.|++++|++|.+.+.........
T Consensus       144 ~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~~  182 (218)
T 4djt_A          144 LKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFV  182 (218)
T ss_dssp             TTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCTTCCBC
T ss_pred             HHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcccccccc
Confidence            888889999999999999999999999999876555444

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.91  E-value=1.5e-23  Score=143.11  Aligned_cols=116  Identities=46%  Similarity=0.777  Sum_probs=104.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||+|+++|..++..++.++|++|+|||++++.++..+..|+..+........|+++|+||+|+...+.+...++..+
T Consensus        77 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~  156 (200)
T 2o52_A           77 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRF  156 (200)
T ss_dssp             EEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHH
Confidence            48999999999999999999999999999999999999999999988776656799999999999976666777888888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS  116 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~  116 (144)
                      +...+++++++||++|.|++++|++|.+.+......
T Consensus       157 ~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~  192 (200)
T 2o52_A          157 AQENELMFLETSALTGENVEEAFLKCARTILNKIDS  192 (200)
T ss_dssp             HHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHT
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhc
Confidence            988999999999999999999999999998765443

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.91  E-value=1.1e-23  Score=140.42  Aligned_cols=111  Identities=49%  Similarity=0.846  Sum_probs=101.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||+|++++..++..++.++|++++|||+++..+++.+..|+..+........|+++|+||+|+...+.+..+++..+
T Consensus        67 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  146 (179)
T 1z0f_A           67 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQF  146 (179)
T ss_dssp             EEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence            48999999999999999999999999999999999999999999988877666799999999999976666777888889


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ++..+++++++||++|.|++++|++|.+.+.
T Consensus       147 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  177 (179)
T 1z0f_A          147 AEENGLLFLEASAKTGENVEDAFLEAAKKIY  177 (179)
T ss_dssp             HHHTTCEEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999998774

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.91  E-value=1.8e-23  Score=140.29  Aligned_cols=112  Identities=37%  Similarity=0.578  Sum_probs=102.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      +||||+|+++|..++..++.++|++++|||++++.+|..+..|+..+.... ....|+++|+||+|+...+.+..+++..
T Consensus        69 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~  148 (183)
T 3kkq_A           69 DVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE  148 (183)
T ss_dssp             EEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHH
T ss_pred             EEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHH
Confidence            379999999999999999999999999999999999999999998886643 3478999999999998777788889999


Q ss_pred             HHHHcCCcEEEeecC-CCCCHHHHHHHHHHHHHH
Q 032243           80 FADEIGIPFMETSAK-DSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~-~~~~i~~l~~~i~~~~~~  112 (144)
                      +++..+++++++||+ ++.|++++|++|.+.+.+
T Consensus       149 ~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          149 MATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             HHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence            999999999999999 999999999999998864

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.91  E-value=1.2e-23  Score=142.16  Aligned_cols=113  Identities=48%  Similarity=0.890  Sum_probs=103.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||+|+++|..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+...+.+..+++..+
T Consensus        74 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  153 (189)
T 2gf9_A           74 QIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRL  153 (189)
T ss_dssp             EEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHH
Confidence            48999999999999999999999999999999999999999999998877655789999999999976666777888889


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      ++..+++++++||++|.|++++|++|.+.+.+.
T Consensus       154 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~  186 (189)
T 2gf9_A          154 ADDLGFEFFEASAKENINVKQVFERLVDVICEK  186 (189)
T ss_dssp             HHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988754

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.91  E-value=7.3e-24  Score=140.31  Aligned_cols=111  Identities=38%  Similarity=0.743  Sum_probs=94.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||||++++..++..++.++|++++|+|++++.++..+..|+..+........|+++|+||+|+...+.+..+++..+
T Consensus        58 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  137 (170)
T 1z08_A           58 AIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESY  137 (170)
T ss_dssp             EEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHH
Confidence            48999999999999999999999999999999999999999999888776555689999999999976666778888889


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ++..+++++++||++|.|++++|++|.+.+.
T Consensus       138 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  168 (170)
T 1z08_A          138 AESVGAKHYHTSAKQNKGIEELFLDLCKRMI  168 (170)
T ss_dssp             HHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHcCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999998875

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.91  E-value=1.7e-23  Score=139.70  Aligned_cols=114  Identities=34%  Similarity=0.572  Sum_probs=101.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      +||||+|+++|..++..++.++|++++|||++++.++..+..|+..+... .....|+++|+||+|+...+.+...++..
T Consensus        60 ~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~  139 (181)
T 2fn4_A           60 DILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA  139 (181)
T ss_dssp             EEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             EEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH
Confidence            47999999999999999999999999999999999999999999888443 34578999999999997666677888888


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      ++...+++++++||++|.|++++|++|.+.+....
T Consensus       140 ~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~  174 (181)
T 2fn4_A          140 FGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ  174 (181)
T ss_dssp             HHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence            88888999999999999999999999999987644

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.91  E-value=1.5e-23  Score=138.57  Aligned_cols=110  Identities=47%  Similarity=0.831  Sum_probs=99.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||||+++|..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+.....+..+++..+
T Consensus        58 ~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~  137 (170)
T 1r2q_A           58 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSY  137 (170)
T ss_dssp             EEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHH
Confidence            48999999999999999999999999999999999999999999998877656799999999999976566777888888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      +...+++++++||++|.|++++|++|.+.+
T Consensus       138 ~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~  167 (170)
T 1r2q_A          138 ADDNSLLFMETSAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             HHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred             HHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            888999999999999999999999998765

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.91  E-value=1.4e-23  Score=140.58  Aligned_cols=114  Identities=31%  Similarity=0.459  Sum_probs=101.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      +||||||+++|..++..++.++|++++|||++++.+++.+..|+..+..... ...|+++|+||+|+...+.+..+++..
T Consensus        57 ~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~  136 (181)
T 3t5g_A           57 QLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKA  136 (181)
T ss_dssp             EEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHH
T ss_pred             EEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHH
Confidence            4899999999999999999999999999999999999999999988866543 468999999999998778888899999


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      +++..+++++++||++|.|++++|+.|...+....
T Consensus       137 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  171 (181)
T 3t5g_A          137 LAESWNAAFLESSAKENQTAVDVFRRIILEAEKMD  171 (181)
T ss_dssp             HHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999987543

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.91  E-value=1.6e-23  Score=141.85  Aligned_cols=115  Identities=45%  Similarity=0.750  Sum_probs=103.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||+|+++|..++..++.++|++|+|||++++.++..+..|+..+........|+++|+||+|+...+.+...++..+
T Consensus        77 ~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  156 (193)
T 2oil_A           77 QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMF  156 (193)
T ss_dssp             EEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHH
Confidence            48999999999999999999999999999999999999999999988776656789999999999976566777888888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA  115 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~  115 (144)
                      +...+++++++||++|.|++++|++|.+.+.....
T Consensus       157 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  191 (193)
T 2oil_A          157 AENNGLLFLETSALDSTNVELAFETVLKEIFAKVS  191 (193)
T ss_dssp             HHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            88889999999999999999999999999876543

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.91  E-value=8.4e-24  Score=141.10  Aligned_cols=112  Identities=31%  Similarity=0.499  Sum_probs=98.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCc-EEEEEeCCCCCCCcccCHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVN-KLLVGNKCDLTANKVVSYETA   77 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p-~ilv~nK~Dl~~~~~~~~~~~   77 (144)
                      ++|||||+++|..++..++.++|++++|||++++.+++.+..|+..+.....  ...| +++|+||+|+...+.+..+++
T Consensus        59 ~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~  138 (178)
T 2hxs_A           59 QIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKH  138 (178)
T ss_dssp             EEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHH
T ss_pred             EEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHH
Confidence            4899999999999999999999999999999999999999999888866432  1345 899999999976566777888


Q ss_pred             HHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           78 KAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        78 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      ..+++..+++++++||++|.|++++|++|...+..
T Consensus       139 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  173 (178)
T 2hxs_A          139 LRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG  173 (178)
T ss_dssp             HHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            88988899999999999999999999999998754

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.91  E-value=2.6e-23  Score=137.55  Aligned_cols=112  Identities=52%  Similarity=0.953  Sum_probs=101.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||||++++..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+ ....+..++...+
T Consensus        55 ~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~  133 (170)
T 1g16_A           55 QIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEAL  133 (170)
T ss_dssp             EEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHH
T ss_pred             EEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHH
Confidence            489999999999999999999999999999999999999999999988776667899999999999 4445667888888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      ++..+++++++||++|.|++++|++|.+.+.++
T Consensus       134 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  166 (170)
T 1g16_A          134 AKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK  166 (170)
T ss_dssp             HHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             HHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            888999999999999999999999999998754

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.91  E-value=2.8e-24  Score=147.59  Aligned_cols=112  Identities=31%  Similarity=0.586  Sum_probs=96.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcc--------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKV--------   71 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--------   71 (144)
                      +||||||+++|..++..++.++|++++|||++++.+|..+. .|+..+....+ ..|+++|+||.|+.....        
T Consensus        60 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~  138 (212)
T 2j0v_A           60 GLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTKLDLRDDKGYLADHTNV  138 (212)
T ss_dssp             EEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHTCSSC
T ss_pred             EEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCHHhhhCccccccccCC
Confidence            48999999999999999999999999999999999999986 78888877653 689999999999865443        


Q ss_pred             cCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           72 VSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        72 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      +...++..++...+. +++++||++|.|++++|++|.+.+...
T Consensus       139 v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  181 (212)
T 2j0v_A          139 ITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP  181 (212)
T ss_dssp             CCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence            357778888888886 999999999999999999999998753

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.90  E-value=3.3e-23  Score=139.67  Aligned_cols=115  Identities=39%  Similarity=0.744  Sum_probs=103.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      +||||||+++|..++..++.++|++++|||++++.++..+..|+..+..... ...|+++|+||+|+...+.+..+++..
T Consensus        73 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  152 (195)
T 3bc1_A           73 QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARE  152 (195)
T ss_dssp             EEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             EEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH
Confidence            4899999999999999999999999999999999999999999998877654 578999999999997656677788888


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA  115 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~  115 (144)
                      ++...+++++++||++|.|++++|++|.+.+.....
T Consensus       153 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  188 (195)
T 3bc1_A          153 LAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRME  188 (195)
T ss_dssp             HHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            888899999999999999999999999999876543

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.90  E-value=4.8e-23  Score=136.94  Aligned_cols=116  Identities=30%  Similarity=0.384  Sum_probs=94.9

Q ss_pred             CceeccchhH--HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHH
Q 032243            1 MQWDTAGQER--FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETA   77 (144)
Q Consensus         1 qi~Dt~G~~~--~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~   77 (144)
                      ++|||+|+++  +..+...++..+|++++|||++++.+|..+..|+..+.... ....|+++|+||+|+.+.+.+..++.
T Consensus        55 ~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~  134 (175)
T 2nzj_A           55 VVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEG  134 (175)
T ss_dssp             EEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHH
T ss_pred             EEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHH
Confidence            4899999988  66777888999999999999999999999999988887653 23689999999999987677777888


Q ss_pred             HHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243           78 KAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS  116 (144)
Q Consensus        78 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~  116 (144)
                      ..++...+++++++||++|.|++++|++|.+.+......
T Consensus       135 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~  173 (175)
T 2nzj_A          135 RACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRRD  173 (175)
T ss_dssp             HHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHhhcc
Confidence            888888899999999999999999999999998765443

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.90  E-value=3.6e-23  Score=140.90  Aligned_cols=112  Identities=26%  Similarity=0.356  Sum_probs=100.0

Q ss_pred             CceeccchhHHhh-hhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243            1 MQWDTAGQERFRT-ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAK   78 (144)
Q Consensus         1 qi~Dt~G~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~   78 (144)
                      ++|||+|++++.. ++..++.++|++++|||++++.+|..+..|+..+..... ...|+++|+||+|+...+.+..+++.
T Consensus        75 ~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~  154 (195)
T 3cbq_A           75 VVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGR  154 (195)
T ss_dssp             EEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHH
T ss_pred             EEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHH
Confidence            4899999988765 788889999999999999999999999999998877653 36899999999999776777788888


Q ss_pred             HHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           79 AFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        79 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      .++...+++++++||++|.|++++|+.+++.+..
T Consensus       155 ~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~  188 (195)
T 3cbq_A          155 HLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL  188 (195)
T ss_dssp             HHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence            8998889999999999999999999999998864

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.90  E-value=2.5e-23  Score=138.85  Aligned_cols=115  Identities=53%  Similarity=0.845  Sum_probs=103.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||||++++..++..++.++|++++|||++++.++..+..|+..+..... ..|+++|+||+|+.....+...+...+
T Consensus        61 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~  139 (181)
T 3tw8_B           61 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKF  139 (181)
T ss_dssp             EEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-TSEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCCchhcccCHHHHHHH
Confidence            4899999999999999999999999999999999999999999998877653 689999999999977667778888889


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS  116 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~  116 (144)
                      +...+++++++||++|.|++++|++|.+.+......
T Consensus       140 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~  175 (181)
T 3tw8_B          140 AGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKD  175 (181)
T ss_dssp             HHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999998765443

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.90  E-value=2.2e-23  Score=137.96  Aligned_cols=113  Identities=27%  Similarity=0.370  Sum_probs=96.0

Q ss_pred             CceeccchhHHhh-hhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243            1 MQWDTAGQERFRT-ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAK   78 (144)
Q Consensus         1 qi~Dt~G~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~   78 (144)
                      ++|||+|++++.. ++..++.++|++++|||++++.+|..+..|+..+..... .+.|+++|+||+|+...+.+..+++.
T Consensus        54 ~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~  133 (169)
T 3q85_A           54 IVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGR  133 (169)
T ss_dssp             EEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHH
Confidence            4899999999876 778889999999999999999999999999999877654 36899999999999766778888999


Q ss_pred             HHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           79 AFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        79 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      .+++..+++++++||++|.|++++|+++.+.+..+
T Consensus       134 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~  168 (169)
T 3q85_A          134 HLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR  168 (169)
T ss_dssp             HHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999988753

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.90  E-value=1.6e-23  Score=144.31  Aligned_cols=115  Identities=42%  Similarity=0.763  Sum_probs=102.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      +||||+|+++|..++..++.++|++|||||+++..++..+..|+..+..... ...|+++|+||+|+...+.+...++..
T Consensus        87 ~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~  166 (217)
T 2f7s_A           87 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARE  166 (217)
T ss_dssp             EEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             EEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHH
Confidence            4899999999999999999999999999999999999999988887765443 468999999999997666677888888


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA  115 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~  115 (144)
                      ++...+++++++||+++.|++++|++|...+.....
T Consensus       167 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~  202 (217)
T 2f7s_A          167 LADKYGIPYFETSAATGQNVEKAVETLLDLIMKRME  202 (217)
T ss_dssp             HHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999876543

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.90  E-value=4.4e-23  Score=136.41  Aligned_cols=110  Identities=42%  Similarity=0.773  Sum_probs=100.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||||++++..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+...+.+..++...+
T Consensus        58 ~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~  137 (170)
T 1z0j_A           58 LIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDY  137 (170)
T ss_dssp             EEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHH
Confidence            48999999999999999999999999999999999999999999999887666789999999999976666777888888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      +...+++++++||++|.|++++|++|.+.+
T Consensus       138 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i  167 (170)
T 1z0j_A          138 ADSIHAIFVETSAKNAININELFIEISRRI  167 (170)
T ss_dssp             HHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             HHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence            888899999999999999999999998765

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.90  E-value=2.1e-23  Score=141.45  Aligned_cols=112  Identities=46%  Similarity=0.868  Sum_probs=100.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||+|+++|..++..++.++|++++|||+++..++..+..|+..+........|+++|+||+|+...+.+..+++..+
T Consensus        78 ~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~  157 (192)
T 2il1_A           78 QIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKF  157 (192)
T ss_dssp             EEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence            48999999999999999999999999999999999999999998888777666799999999999976666777788888


Q ss_pred             HHHc-CCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           81 ADEI-GIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        81 ~~~~-~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      +... +++++++||++|.|++++|++|.+.+.+
T Consensus       158 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~  190 (192)
T 2il1_A          158 AQQITGMRFCEASAKDNFNVDEIFLKLVDDILK  190 (192)
T ss_dssp             HHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            8774 7899999999999999999999998864

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.90  E-value=3e-23  Score=141.54  Aligned_cols=114  Identities=26%  Similarity=0.495  Sum_probs=93.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCC-CcccCHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTA-NKVVSYET   76 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~-~~~~~~~~   76 (144)
                      +||||||+++|..++..++.++|++++|||++++.+|..+..|+..+.....   ...|+++|+||+|+.. .+.+..++
T Consensus        76 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~  155 (208)
T 2yc2_C           76 FLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDM  155 (208)
T ss_dssp             EEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHH
T ss_pred             EEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHH
Confidence            4899999999999999999999999999999999999999999999988765   5799999999999976 66777888


Q ss_pred             HHHHHHHcCCcEEEeecCC-CCCHHHHHHHHHHHHHHhh
Q 032243           77 AKAFADEIGIPFMETSAKD-STNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        77 ~~~~~~~~~~~~~~~Sa~~-~~~i~~l~~~i~~~~~~~~  114 (144)
                      +..+++..+++++++||++ |.|++++|++|...+....
T Consensus       156 ~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~  194 (208)
T 2yc2_C          156 AQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNY  194 (208)
T ss_dssp             HHHHHHHTTCEEEECCC-------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHHHH
Confidence            8999999999999999999 9999999999999886543

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.90  E-value=1.5e-23  Score=144.68  Aligned_cols=114  Identities=25%  Similarity=0.520  Sum_probs=100.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHH-HHHHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNN-VKQWLNEIDRYASDNVNKLLVGNKCDLTAN----------   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~----------   69 (144)
                      +||||+|+++|..++..++.++|++|+|||++++.+|.. +..|+..+.... ...|+++|+||+|+...          
T Consensus        78 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~  156 (214)
T 3q3j_B           78 SLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQ  156 (214)
T ss_dssp             EEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHT
T ss_pred             EEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhccc
Confidence            489999999999999999999999999999999999998 688999887775 36899999999999652          


Q ss_pred             --cccCHHHHHHHHHHcCC-cEEEeecCCCCC-HHHHHHHHHHHHHHhhc
Q 032243           70 --KVVSYETAKAFADEIGI-PFMETSAKDSTN-VEQAFMAMAASIKDRMA  115 (144)
Q Consensus        70 --~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~l~~~i~~~~~~~~~  115 (144)
                        +.+..+++..++...++ +++++||++|.| ++++|+.+...+.....
T Consensus       157 ~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          157 KQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             TCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             ccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence              55778889999999998 999999999998 99999999999875443

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=2.3e-23  Score=141.22  Aligned_cols=111  Identities=41%  Similarity=0.793  Sum_probs=101.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||||+++|..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+...+.+..+++..+
T Consensus        75 ~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~  154 (192)
T 2fg5_A           75 LIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEY  154 (192)
T ss_dssp             EEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHH
Confidence            48999999999999999999999999999999999999999999999887666799999999999976566778888889


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ++..+++++++||++|.|++++|++|.+.+.
T Consensus       155 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  185 (192)
T 2fg5_A          155 AESIGAIVVETSAKNAINIEELFQGISRQIP  185 (192)
T ss_dssp             HHTTTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred             HHHcCCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence            9889999999999999999999999988763

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.90  E-value=3e-23  Score=137.07  Aligned_cols=110  Identities=41%  Similarity=0.723  Sum_probs=99.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC---cccCHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN---KVVSYETA   77 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~   77 (144)
                      ++|||||++++..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+...   ..+..++.
T Consensus        55 ~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~  134 (170)
T 1ek0_A           55 EIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEG  134 (170)
T ss_dssp             EEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHH
T ss_pred             EEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHH
Confidence            489999999999999999999999999999999999999999999988776667999999999998654   55667788


Q ss_pred             HHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           78 KAFADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        78 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      ..++...+++++++||++|.|++++|++|.+.+
T Consensus       135 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  167 (170)
T 1ek0_A          135 EKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             HHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            888888899999999999999999999998754

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.90  E-value=3.4e-23  Score=136.47  Aligned_cols=112  Identities=38%  Similarity=0.599  Sum_probs=98.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      +||||||++++..++..++.++|++++|||++++.++..+..|+..+..... ...|+++|+||+|+...+.+..+++..
T Consensus        55 ~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  134 (168)
T 1u8z_A           55 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN  134 (168)
T ss_dssp             EEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             EEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHH
Confidence            4899999999999999999999999999999999999999999988877654 468999999999997666677888888


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      ++...+++++++||++|.|++++|+++.+.+.+
T Consensus       135 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  167 (168)
T 1u8z_A          135 RADQWNVNYVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             HHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence            998899999999999999999999999988753

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.90  E-value=1.8e-22  Score=138.33  Aligned_cols=116  Identities=52%  Similarity=0.936  Sum_probs=103.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||||+++|..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+ ....+...+...+
T Consensus        72 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~  150 (213)
T 3cph_A           72 QLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEAL  150 (213)
T ss_dssp             EEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHH
T ss_pred             EEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHH
Confidence            489999999999999999999999999999999999999999999888776557899999999999 4455667788888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhccC
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ  117 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~~  117 (144)
                      +...+++++++||++|.|++++|++|...+.......
T Consensus       151 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~  187 (213)
T 3cph_A          151 AKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSN  187 (213)
T ss_dssp             HHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHHHHTT
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhhh
Confidence            8888999999999999999999999999987665433

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.90  E-value=4.2e-23  Score=139.61  Aligned_cols=112  Identities=26%  Similarity=0.374  Sum_probs=96.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCC------CHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVT------DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY   74 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~   74 (144)
                      +||||||+++|..++..++.++|++|+|||++      +..+|..+..|+..+.. .....|+++|+||+|+.+.  +..
T Consensus        77 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-~~~~~piilv~NK~Dl~~~--~~~  153 (198)
T 3t1o_A           77 HLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-TLDDVPIVIQVNKRDLPDA--LPV  153 (198)
T ss_dssp             EEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-CTTSSCEEEEEECTTSTTC--CCH
T ss_pred             EEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-ccCCCCEEEEEEchhcccc--cCH
Confidence            48999999999999999999999999999999      55677777777777632 2246899999999998653  567


Q ss_pred             HHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243           75 ETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKDRMA  115 (144)
Q Consensus        75 ~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~  115 (144)
                      +++..++...++ +++++||++|.|++++|++|.+.+.....
T Consensus       154 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~  195 (198)
T 3t1o_A          154 EMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA  195 (198)
T ss_dssp             HHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence            888888888898 99999999999999999999999986554

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.90  E-value=8.3e-23  Score=138.47  Aligned_cols=112  Identities=26%  Similarity=0.533  Sum_probs=99.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC--cccCHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN--KVVSYETA   77 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~   77 (144)
                      +||||||+++|..++..++.++|++++|||++++.+|..+ ..|+..+.... ...|+++|+||+|+...  ..+..+++
T Consensus        74 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~  152 (194)
T 3reg_A           74 HLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEG  152 (194)
T ss_dssp             EEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHH
T ss_pred             EEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHH
Confidence            4899999999999999999999999999999999999997 66877777654 36899999999999643  55678888


Q ss_pred             HHHHHHcCCc-EEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           78 KAFADEIGIP-FMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        78 ~~~~~~~~~~-~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      ..+++..++. ++++||++|.|++++|++|.+.+...
T Consensus       153 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  189 (194)
T 3reg_A          153 DDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN  189 (194)
T ss_dssp             HHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred             HHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence            8999999987 99999999999999999999988643

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.89  E-value=4.2e-23  Score=136.28  Aligned_cols=111  Identities=36%  Similarity=0.635  Sum_probs=100.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||||++++..++..++.++|++++|||++++.+++.+..|+..+.... ...|+++|+||+|+...+.+..+++..+
T Consensus        57 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~  135 (168)
T 1z2a_A           57 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGL  135 (168)
T ss_dssp             EEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHH
T ss_pred             EEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHH
Confidence            489999999999999999999999999999999999999999998887665 4689999999999976566777888889


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      ++..+++++++||++|.|++++|++|.+.+.+
T Consensus       136 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  167 (168)
T 1z2a_A          136 AKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ  167 (168)
T ss_dssp             HHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred             HHHcCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            98899999999999999999999999988753

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.89  E-value=9e-23  Score=138.90  Aligned_cols=114  Identities=30%  Similarity=0.453  Sum_probs=100.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN----------   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~----------   69 (144)
                      +||||+|+++|..++..++.++|++++|||++++.+|..+. .|+..+..... ..|+++|+||+|+...          
T Consensus        71 ~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~  149 (201)
T 2q3h_A           71 QLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQSDLREDVKVLIELDKC  149 (201)
T ss_dssp             EEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEECGGGGGCHHHHHHHHTT
T ss_pred             EEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECHhhhhchhhhhhhccc
Confidence            48999999999999999999999999999999999999987 68888877654 6899999999998642          


Q ss_pred             --cccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243           70 --KVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKDRMA  115 (144)
Q Consensus        70 --~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~  115 (144)
                        ..+..+++..++...+. +++++||++|.|++++|++|...+.....
T Consensus       150 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          150 KEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             TCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             ccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence              45667788888888887 99999999999999999999999876543

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.89  E-value=2.5e-23  Score=141.91  Aligned_cols=113  Identities=30%  Similarity=0.482  Sum_probs=101.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      +||||||+++|..++..++.++|++++|||++++.+|..+..|+..+..... ...|+++|+||+|+...+.+...++..
T Consensus        75 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~  154 (201)
T 3oes_A           75 HLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKK  154 (201)
T ss_dssp             EEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             EEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHH
Confidence            4899999999999999999999999999999999999999999998866532 368999999999997777788888889


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      ++...+++++++||++|.|++++|++|.+.+...
T Consensus       155 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~  188 (201)
T 3oes_A          155 LAESWGATFMESSARENQLTQGIFTKVIQEIARV  188 (201)
T ss_dssp             HHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999998753

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.89  E-value=3.3e-23  Score=140.05  Aligned_cols=110  Identities=28%  Similarity=0.424  Sum_probs=95.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcccCHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTANKVVSYETA   77 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~   77 (144)
                      +||||+|+++|..+ ..++.++|++++|||++++.+|+.+..|+..+.....   ...|+++|+||+|+...+.+..+++
T Consensus        72 ~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~  150 (187)
T 3c5c_A           72 RVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEG  150 (187)
T ss_dssp             EEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHH
T ss_pred             EEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHH
Confidence            48999999998875 6789999999999999999999999999998876632   4689999999999976667778888


Q ss_pred             HHHHHHcCCcEEEeec-CCCCCHHHHHHHHHHHHH
Q 032243           78 KAFADEIGIPFMETSA-KDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        78 ~~~~~~~~~~~~~~Sa-~~~~~i~~l~~~i~~~~~  111 (144)
                      ..++...+++++++|| ++|.|++++|+.|.+.+.
T Consensus       151 ~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~  185 (187)
T 3c5c_A          151 VALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR  185 (187)
T ss_dssp             HHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence            9999999999999999 899999999999998875

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.89  E-value=9.4e-23  Score=136.73  Aligned_cols=114  Identities=38%  Similarity=0.593  Sum_probs=102.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      +||||+|++++..++..++.++|++++|||++++.++..+..|+..+..... ...|+++|+||+|+...+.+...++..
T Consensus        69 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  148 (187)
T 2a9k_A           69 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN  148 (187)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             EEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH
Confidence            4899999999999999999999999999999999999999999988877654 368999999999997666677888888


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      +++..+++++++||+++.|++++|++|.+.+...+
T Consensus       149 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  183 (187)
T 2a9k_A          149 RAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK  183 (187)
T ss_dssp             HHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999987543

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.89  E-value=3.7e-23  Score=140.90  Aligned_cols=111  Identities=43%  Similarity=0.737  Sum_probs=97.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC------CCcccCH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT------ANKVVSY   74 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~------~~~~~~~   74 (144)
                      +||||||+++|..++..++.++|++|+|||++++.++..+..|+..+........|+++|+||+|+.      ..+.+..
T Consensus        80 ~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~  159 (199)
T 2p5s_A           80 QLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPG  159 (199)
T ss_dssp             EEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCH
T ss_pred             EEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCH
Confidence            4899999999999999999999999999999999999999999998877665578999999999985      3455667


Q ss_pred             HHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           75 ETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        75 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      .++..++...+++++++||++|.|++++|++|.+.+.
T Consensus       160 ~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          160 HFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK  196 (199)
T ss_dssp             HHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            7888888888999999999999999999999998874

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.89  E-value=3.6e-23  Score=137.87  Aligned_cols=111  Identities=41%  Similarity=0.686  Sum_probs=100.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||||+++|..++..++.++|++++|||++++.++..+..|+..+........|+++|+||+|+...+.+...+...+
T Consensus        66 ~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~  145 (179)
T 2y8e_A           66 QLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERK  145 (179)
T ss_dssp             EEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHH
Confidence            48999999999999999999999999999999999999999999988776656789999999999976666777888888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +...+++++++||++|.|++++|++|.+.+.
T Consensus       146 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  176 (179)
T 2y8e_A          146 AKELNVMFIETSAKAGYNVKQLFRRVAAALP  176 (179)
T ss_dssp             HHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred             HHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            8888999999999999999999999987653

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=1.3e-22  Score=137.50  Aligned_cols=110  Identities=33%  Similarity=0.535  Sum_probs=98.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN----------   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~----------   69 (144)
                      +||||+|+++|..++..++.++|++++|||++++.+|..+. .|+..+..... ..|+++|+||+|+...          
T Consensus        69 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~  147 (194)
T 2atx_A           69 GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDPKTLARLNDM  147 (194)
T ss_dssp             EEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCHHHHHHHTTT
T ss_pred             EEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccccchhhcccc
Confidence            48999999999999999999999999999999999999987 78888877643 6899999999999653          


Q ss_pred             --cccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           70 --KVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        70 --~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                        +.+..+++..++...+. +++++||++|.|++++|++|.+.+.
T Consensus       148 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          148 KEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             TCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence              35667888889988887 9999999999999999999998875

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.89  E-value=1.1e-22  Score=137.30  Aligned_cols=111  Identities=42%  Similarity=0.816  Sum_probs=97.4

Q ss_pred             CceeccchhHHh-hhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243            1 MQWDTAGQERFR-TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAK   78 (144)
Q Consensus         1 qi~Dt~G~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~   78 (144)
                      +||||+|+++|. .++..++.++|++++|||+++..++..+..|+..+.... ....|+++|+||+|+...+.+..+++.
T Consensus        72 ~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~  151 (189)
T 1z06_A           72 QLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQ  151 (189)
T ss_dssp             EEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHH
Confidence            489999999998 899999999999999999999999999999999887765 347899999999999766667788888


Q ss_pred             HHHHHcCCcEEEeecCCC---CCHHHHHHHHHHHHH
Q 032243           79 AFADEIGIPFMETSAKDS---TNVEQAFMAMAASIK  111 (144)
Q Consensus        79 ~~~~~~~~~~~~~Sa~~~---~~i~~l~~~i~~~~~  111 (144)
                      .++...+++++++||+++   .|++++|++|.+.+.
T Consensus       152 ~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          152 KFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             HHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred             HHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence            899889999999999999   999999999988764

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.89  E-value=8.8e-23  Score=134.60  Aligned_cols=110  Identities=35%  Similarity=0.612  Sum_probs=98.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||||++++..++..++.++|++++|||++++.++..+..|+..+.... ....|+++|+||+|+.+.+.+..+++..
T Consensus        54 ~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  133 (167)
T 1c1y_A           54 EILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN  133 (167)
T ss_dssp             EEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             EEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHH
Confidence            489999999999999999999999999999999999999999988886653 3478999999999997666677788888


Q ss_pred             HHHHc-CCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           80 FADEI-GIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        80 ~~~~~-~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      +++.. +.+++++||++|.|++++|++|.+.+
T Consensus       134 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  165 (167)
T 1c1y_A          134 LARQWCNCAFLESSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             HHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence            88887 78999999999999999999998876

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.89  E-value=1.6e-22  Score=136.45  Aligned_cols=109  Identities=19%  Similarity=0.377  Sum_probs=95.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCC--CCcccCHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLT--ANKVVSYETA   77 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~--~~~~~~~~~~   77 (144)
                      +||||+|+++|.     ++.++|++++|||++++.+|..+..|+..+..... ...|+++|+||.|+.  ....+..+++
T Consensus        70 ~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~  144 (184)
T 3ihw_A           70 LIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRA  144 (184)
T ss_dssp             EEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHH
T ss_pred             EEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHH
Confidence            479999999887     78889999999999999999999999999977643 468999999999983  4566778888


Q ss_pred             HHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           78 KAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        78 ~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      ..++...+ ++++++||++|.|++++|+++.+.+....
T Consensus       145 ~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          145 RKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALR  182 (184)
T ss_dssp             HHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence            89999887 89999999999999999999999887643

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.89  E-value=5e-22  Score=134.68  Aligned_cols=110  Identities=34%  Similarity=0.605  Sum_probs=99.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||||+++|..++..++.++|++++|||++++.++..+..|+..+.....  .|+++|+||+| .....+..+++..+
T Consensus        96 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~~~~~~~~~~~~~  172 (208)
T 3clv_A           96 DIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KNKFQVDILEVQKY  172 (208)
T ss_dssp             EEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC-CCSCHHHHHHH
T ss_pred             EEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-cccccCCHHHHHHH
Confidence            4899999999999999999999999999999999999999999998877653  89999999999 45556778888899


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      +...+++++++||++|.|++++|++|...+...
T Consensus       173 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          173 AQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             HHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999988754

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.89  E-value=7.6e-23  Score=134.64  Aligned_cols=111  Identities=38%  Similarity=0.629  Sum_probs=99.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||||++++..++..++.++|++++|||++++.++..+..|+..+..... ...|+++|+||+|+...+.+...+...
T Consensus        54 ~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  133 (167)
T 1kao_A           54 EILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRA  133 (167)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             EEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHH
Confidence            4899999999999999999999999999999999999999999888866543 468999999999997666677788888


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ++...+++++++||++|.|++++|++|.+.+.
T Consensus       134 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  165 (167)
T 1kao_A          134 LAEEWGCPFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             HHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCEEEecCCCCcCHHHHHHHHHHHHh
Confidence            88888999999999999999999999998875

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=2.3e-22  Score=138.78  Aligned_cols=114  Identities=25%  Similarity=0.356  Sum_probs=97.2

Q ss_pred             CceeccchhH-HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243            1 MQWDTAGQER-FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAK   78 (144)
Q Consensus         1 qi~Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~   78 (144)
                      ++|||+|+++ +..+.+.|+..+|++++|||++++.+|+.+..|+..+.... ....|+++|+||+|+...+.+..++..
T Consensus        90 ~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~  169 (211)
T 2g3y_A           90 ILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGR  169 (211)
T ss_dssp             EEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHH
Confidence            3799999987 56677788899999999999999999999999988776542 246899999999999765667777777


Q ss_pred             HHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           79 AFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        79 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      .++...+++++++||++|.|++++|++|++.+....
T Consensus       170 ~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~~  205 (211)
T 2g3y_A          170 ACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR  205 (211)
T ss_dssp             HHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            788888999999999999999999999999886543

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.89  E-value=4.7e-22  Score=132.47  Aligned_cols=111  Identities=39%  Similarity=0.696  Sum_probs=97.8

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCcccCHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTANKVVSYET   76 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~   76 (144)
                      +||||||++++..++..++.++|++++|||+++..++..+..|+..+.....    ...|+++|+||+|+. ...+..++
T Consensus        59 ~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~  137 (177)
T 1wms_A           59 QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEE  137 (177)
T ss_dssp             EEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHH
T ss_pred             EEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHH
Confidence            4899999999999999999999999999999999999999999988876543    468999999999996 45566778


Q ss_pred             HHHHHH-HcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           77 AKAFAD-EIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        77 ~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      +..++. ..+++++++||++|.|++++|+++.+.+..
T Consensus       138 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  174 (177)
T 1wms_A          138 AQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            888887 556899999999999999999999998864

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.89  E-value=2.5e-22  Score=134.15  Aligned_cols=113  Identities=41%  Similarity=0.659  Sum_probs=88.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCC-cccCHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTAN-KVVSYE   75 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~   75 (144)
                      ++|||||+++|..++..++.++|++++|||++++.++..+..|+..+.....    ...|+++|+||+|+... ..+...
T Consensus        61 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~  140 (182)
T 1ky3_A           61 QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEK  140 (182)
T ss_dssp             EEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHH
T ss_pred             EEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHH
Confidence            4899999999999999999999999999999999999999999988876543    46899999999998533 345677


Q ss_pred             HHHHHHH-HcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           76 TAKAFAD-EIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        76 ~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      ++..++. ..+++++++||++|.|++++|++|.+.+...
T Consensus       141 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          141 SAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ  179 (182)
T ss_dssp             HHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            7777877 4568999999999999999999999988754

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.89  E-value=9.5e-23  Score=136.73  Aligned_cols=111  Identities=29%  Similarity=0.505  Sum_probs=97.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN----------   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~----------   69 (144)
                      +||||||+++|..++..++.++|++++|||++++.++..+. .|+..+..... ..|+++|+||+|+.+.          
T Consensus        56 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~  134 (186)
T 1mh1_A           56 GLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEK  134 (186)
T ss_dssp             EEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHT
T ss_pred             EEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhccc
Confidence            48999999999999999999999999999999999999987 68888876654 6899999999998653          


Q ss_pred             --cccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           70 --KVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        70 --~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                        +.+...+...++...+. +++++||++|.|++++|++|.+.+..
T Consensus       135 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  180 (186)
T 1mh1_A          135 KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC  180 (186)
T ss_dssp             TCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred             ccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence              34567778888888886 99999999999999999999998853

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=4.1e-22  Score=134.63  Aligned_cols=112  Identities=45%  Similarity=0.796  Sum_probs=99.8

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      +||||||+++|..++..++.++|++++|||++++.++..+..|+..+..... ...|+++|+||+|+. ...+..+++..
T Consensus        67 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~  145 (195)
T 1x3s_A           67 AIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLK  145 (195)
T ss_dssp             EEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHH
T ss_pred             EEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHH
Confidence            4899999999999999999999999999999999999999999988876543 468999999999994 34566778888


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      ++...+++++++||+++.|++++|++|.+.+...
T Consensus       146 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  179 (195)
T 1x3s_A          146 FARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT  179 (195)
T ss_dssp             HHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             HHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence            8988999999999999999999999999998753

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.88  E-value=7.2e-22  Score=133.23  Aligned_cols=113  Identities=36%  Similarity=0.649  Sum_probs=90.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      +||||+|+++|..++..++.++|++++|||+++..++.++..|+..+..... ...|+++|+||+|+.. ..+..+++..
T Consensus        72 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~  150 (190)
T 3con_A           72 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHE  150 (190)
T ss_dssp             EEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHH
T ss_pred             EEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHH
Confidence            4899999999999999999999999999999999999999999888876653 4689999999999865 4556788888


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      +++..+++++++||+++.|++++|++|.+.+....
T Consensus       151 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  185 (190)
T 3con_A          151 LAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYR  185 (190)
T ss_dssp             HHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999987543

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.88  E-value=1.2e-22  Score=135.97  Aligned_cols=110  Identities=33%  Similarity=0.590  Sum_probs=95.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcc--------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKV--------   71 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--------   71 (144)
                      +||||||+++|..++..++.++|++++|||++++.++..+. .|+..+..... ..|+++|+||+|+.+...        
T Consensus        59 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~  137 (182)
T 3bwd_D           59 GLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGTKLDLRDDKQFFIDHPGA  137 (182)
T ss_dssp             EEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEECHHHHTCHHHHHHC--C
T ss_pred             EEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEechhhhcCcccccccccC
Confidence            48999999999999999999999999999999999999987 68888877653 689999999999865443        


Q ss_pred             --cCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           72 --VSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        72 --~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                        +...++..++...+. +++++||++|.|++++|++|.+.+.
T Consensus       138 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          138 VPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             CCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence              366778888888886 9999999999999999999998764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=2.3e-22  Score=136.60  Aligned_cols=113  Identities=35%  Similarity=0.501  Sum_probs=100.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      +||||+|+++ ..++..++.++|++++|||++++.+|+.+..|+..+..... ...|+++|+||+|+...+.+...++..
T Consensus        79 ~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~  157 (196)
T 2atv_A           79 EILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEK  157 (196)
T ss_dssp             EEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             EEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHH
Confidence            4899999988 77889999999999999999999999999999888876543 478999999999997666677888888


Q ss_pred             HHHHcCCcEEEeecCCCC-CHHHHHHHHHHHHHHhh
Q 032243           80 FADEIGIPFMETSAKDST-NVEQAFMAMAASIKDRM  114 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~-~i~~l~~~i~~~~~~~~  114 (144)
                      ++...+++++++||++|. |++++|++|...+.+..
T Consensus       158 ~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~~  193 (196)
T 2atv_A          158 LATELACAFYECSACTGEGNITEIFYELCREVRRRR  193 (196)
T ss_dssp             HHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhhc
Confidence            998899999999999999 99999999999987654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.88  E-value=5.1e-22  Score=132.61  Aligned_cols=109  Identities=21%  Similarity=0.366  Sum_probs=91.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCC--CCcccCHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA---SDNVNKLLVGNKCDLT--ANKVVSYE   75 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~--~~~~~~~~   75 (144)
                      +||||+|+++     ..++.++|++++|||++++.+|..+..|+..+....   ....|+++|+||.|+.  ..+.+..+
T Consensus        57 ~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~  131 (178)
T 2iwr_A           57 LIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDA  131 (178)
T ss_dssp             EEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHH
T ss_pred             EEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHH
Confidence            4899999986     457888999999999999999999998766664442   2468999999999983  34567778


Q ss_pred             HHHHHHHHc-CCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           76 TAKAFADEI-GIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        76 ~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      ++..++... +++++++||++|.|++++|+++.+.+....
T Consensus       132 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  171 (178)
T 2iwr_A          132 RARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLR  171 (178)
T ss_dssp             HHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHHH
Confidence            888888776 689999999999999999999999887543

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.88  E-value=3.4e-22  Score=137.71  Aligned_cols=112  Identities=30%  Similarity=0.601  Sum_probs=83.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc---------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK---------   70 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~---------   70 (144)
                      +||||+|+++|..++..++.++|++++|||++++.+|..+. .|+..+.... ...|+++|+||+|+....         
T Consensus        85 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~  163 (214)
T 2j1l_A           85 HIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRN  163 (214)
T ss_dssp             EEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHT
T ss_pred             EEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhccc
Confidence            48999999999999999999999999999999999999986 6888887665 368999999999996542         


Q ss_pred             ---ccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           71 ---VVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        71 ---~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                         .+..+++..+++..+. +++++||++|.|++++|++|.+.+...
T Consensus       164 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          164 GLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             TCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred             ccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence               4566778888888887 999999999999999999999998753

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=7.3e-23  Score=135.46  Aligned_cols=111  Identities=31%  Similarity=0.451  Sum_probs=97.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAK   78 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~   78 (144)
                      ++|||||+++|..++..++.++|++++|||++++.+++.+..|+..+.....  ...|+++|+||+|+.+.+.+...+..
T Consensus        54 ~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~  133 (172)
T 2erx_A           54 QITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAE  133 (172)
T ss_dssp             EEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHH
T ss_pred             EEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHH
Confidence            4899999999999999999999999999999999999998888888766532  36899999999999766667777888


Q ss_pred             HHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           79 AFADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        79 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      .++...+++++++||++|.|++++|++|.+.+.
T Consensus       134 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  166 (172)
T 2erx_A          134 ALARTWKCAFMETSAKLNHNVKELFQELLNLEK  166 (172)
T ss_dssp             HHHHHHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred             HHHHHhCCeEEEecCCCCcCHHHHHHHHHHHHh
Confidence            888888999999999999999999999988653

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.88  E-value=9.3e-22  Score=134.21  Aligned_cols=110  Identities=29%  Similarity=0.537  Sum_probs=96.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN----------   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~----------   69 (144)
                      +||||||+++|..++..++.++|++++|||++++.++..+ ..|+..+.... ...|+++|+||+|+...          
T Consensus        76 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~  154 (201)
T 2gco_A           76 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKM  154 (201)
T ss_dssp             EEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTT
T ss_pred             EEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhccc
Confidence            4899999999999999999999999999999999999998 56777776654 36899999999999754          


Q ss_pred             --cccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           70 --KVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        70 --~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                        +.+..+++..++...+. +++++||++|.|++++|++|.+.+.
T Consensus       155 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          155 KQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             TCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence              34667788888888887 8999999999999999999998875

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.88  E-value=3e-22  Score=135.80  Aligned_cols=112  Identities=19%  Similarity=0.291  Sum_probs=91.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--------CCCcEEEEEeCCCCCCCccc
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--------DNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      +||||+|+++|..++..++.++|++|+|||+++..+|..+..|+..+.....        ...|+++|+||+|+..... 
T Consensus        66 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-  144 (199)
T 4bas_A           66 TVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT-  144 (199)
T ss_dssp             EEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC-
T ss_pred             EEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC-
Confidence            4899999999999999999999999999999999999999998888755411        2589999999999965432 


Q ss_pred             CHHHHHHH------HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           73 SYETAKAF------ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        73 ~~~~~~~~------~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                       ..+....      ++..+++++++||++|.|++++|++|.+.+....
T Consensus       145 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          145 -AAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             -HHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence             2222111      1335678999999999999999999999987654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.88  E-value=1.2e-21  Score=128.63  Aligned_cols=110  Identities=37%  Similarity=0.652  Sum_probs=98.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||||++++..++..++.++|++++|||+++..++..+..|+..+..... ...|+++++||+|+.+ ......+...
T Consensus        54 ~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~  132 (166)
T 2ce2_X           54 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQD  132 (166)
T ss_dssp             EEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHH
T ss_pred             EEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHH
Confidence            4799999999999999999999999999999999999999999988877653 3689999999999865 4456778888


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +++..+++++++||++|.|++++|++|.+.+.
T Consensus       133 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  164 (166)
T 2ce2_X          133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             HHHHHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence            88889999999999999999999999998875

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.88  E-value=3.3e-22  Score=134.58  Aligned_cols=110  Identities=29%  Similarity=0.583  Sum_probs=96.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN----------   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~----------   69 (144)
                      +||||+|+++|..++..++.++|++++|||++++.+|..+ ..|+..+.... ...|+++|+||+|+...          
T Consensus        58 ~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~  136 (184)
T 1m7b_A           58 SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNH  136 (184)
T ss_dssp             EEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTT
T ss_pred             EEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhc
Confidence            4899999999999999999999999999999999999998 67888887664 36899999999999642          


Q ss_pred             --cccCHHHHHHHHHHcC-CcEEEeecC-CCCCHHHHHHHHHHHHH
Q 032243           70 --KVVSYETAKAFADEIG-IPFMETSAK-DSTNVEQAFMAMAASIK  111 (144)
Q Consensus        70 --~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~~i~~l~~~i~~~~~  111 (144)
                        +.+..+++..+++..+ .+++++||+ ++.|++++|+.+.+.+.
T Consensus       137 ~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l  182 (184)
T 1m7b_A          137 RQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV  182 (184)
T ss_dssp             TCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHh
Confidence              4567788888888887 699999999 68999999999998875

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.87  E-value=8.4e-23  Score=134.55  Aligned_cols=110  Identities=19%  Similarity=0.307  Sum_probs=87.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||||+++|..++..++.++|++++|||++++.+|..+..|+..+... .....|+++|+||+|+....  ...+...
T Consensus        47 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~  124 (164)
T 1r8s_A           47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITD  124 (164)
T ss_dssp             EEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHH
T ss_pred             EEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHH
Confidence            48999999999999999999999999999999999999998888887553 22468999999999996532  2222222


Q ss_pred             HHH-----HcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           80 FAD-----EIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        80 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      ...     ..+++++++||++|.|++++|++|.+.+..
T Consensus       125 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A          125 KLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN  162 (164)
T ss_dssp             HTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             HhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence            111     124579999999999999999999988753

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.87  E-value=1e-21  Score=134.51  Aligned_cols=111  Identities=29%  Similarity=0.535  Sum_probs=96.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN----------   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~----------   69 (144)
                      +||||||+++|..++..++.++|++++|||++++.++..+ ..|+..+.... ...|+++|+||+|+...          
T Consensus        76 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~  154 (207)
T 2fv8_A           76 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARM  154 (207)
T ss_dssp             EEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHT
T ss_pred             EEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhc
Confidence            4899999999999999999999999999999999999998 56877776654 36899999999999654          


Q ss_pred             --cccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           70 --KVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        70 --~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                        +.+...+...++...+. +++++||++|.|++++|++|.+.+..
T Consensus       155 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~  200 (207)
T 2fv8_A          155 KQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ  200 (207)
T ss_dssp             TCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred             ccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence              34566777888888887 89999999999999999999998864

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.87  E-value=6.1e-22  Score=135.87  Aligned_cols=111  Identities=29%  Similarity=0.585  Sum_probs=96.8

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDNVNKLLVGNKCDLTAN----------   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~----------   69 (144)
                      +||||+|+++|..++..++.++|++++|||++++.+|..+ ..|+..+.... ...|+++|+||+|+...          
T Consensus        79 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~  157 (205)
T 1gwn_A           79 SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNH  157 (205)
T ss_dssp             EEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTT
T ss_pred             EEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhccc
Confidence            4899999999999999999999999999999999999998 67888887664 36899999999999642          


Q ss_pred             --cccCHHHHHHHHHHcC-CcEEEeecC-CCCCHHHHHHHHHHHHHH
Q 032243           70 --KVVSYETAKAFADEIG-IPFMETSAK-DSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        70 --~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~~i~~l~~~i~~~~~~  112 (144)
                        +.+..+++..+++..+ ++++++||+ ++.|++++|+.+.+.+..
T Consensus       158 ~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          158 RQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             TCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence              4566778888888887 699999999 689999999999988764

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.87  E-value=6.2e-24  Score=144.74  Aligned_cols=111  Identities=84%  Similarity=1.271  Sum_probs=90.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||+|+++|..++..++.++|++++|||++++.+|..+..|+..+........|+++|+||+|+.+.+.+...++..+
T Consensus        85 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~  164 (199)
T 3l0i_B           85 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEF  164 (199)
T ss_dssp             EEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHH
T ss_pred             EEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHH
Confidence            48999999999999999999999999999999999999999999999777666799999999999976666666667778


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +...+++++++||++|.|++++|++|.+.+.
T Consensus       165 ~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~  195 (199)
T 3l0i_B          165 ADSLGIPFLETSAKNATNVEQSFMTMAAEIK  195 (199)
T ss_dssp             HHTTTCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred             HHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            8888999999999999999999999987764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.87  E-value=6.1e-22  Score=135.02  Aligned_cols=107  Identities=22%  Similarity=0.288  Sum_probs=86.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||||+++++.++..++.++|++++|+|++++.+|..+..|+..+.... ....|+++|+||+|+..  .+..+++..
T Consensus        72 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~  149 (198)
T 1f6b_A           72 TTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLRE  149 (198)
T ss_dssp             EEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHH
T ss_pred             EEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHH
Confidence            489999999999999999999999999999999999999999988886542 24689999999999964  345666666


Q ss_pred             HHHH-----------------cCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           80 FADE-----------------IGIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        80 ~~~~-----------------~~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      ++..                 .+++++++||++|.|++++|++|.+.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          150 MFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             HHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             HhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence            5542                 23579999999999999999998754

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.87  E-value=6.8e-22  Score=135.30  Aligned_cols=109  Identities=29%  Similarity=0.529  Sum_probs=95.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcc--------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKV--------   71 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--------   71 (144)
                      +||||||+++|..++..++.++|++++|||++++.++..+. .|+..+.... ...|+++|+||+|+.....        
T Consensus        81 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~  159 (204)
T 4gzl_A           81 GLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEK  159 (204)
T ss_dssp             EEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHT
T ss_pred             EEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhcc
Confidence            38999999999999999999999999999999999999987 6888887765 4689999999999865432        


Q ss_pred             ----cCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHH
Q 032243           72 ----VSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        72 ----~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                          +...++..+++..+. +++++||++|.|++++|++|.+.+
T Consensus       160 ~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          160 KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred             ccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence                667778888888886 699999999999999999998754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.86  E-value=5.5e-21  Score=129.78  Aligned_cols=113  Identities=26%  Similarity=0.371  Sum_probs=94.3

Q ss_pred             CceeccchhH-HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243            1 MQWDTAGQER-FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAK   78 (144)
Q Consensus         1 qi~Dt~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~   78 (144)
                      ++|||+|++. +..++..++..+|++++|||++++.+|+.+..|+..+.... ....|+++|+||.|+...+.+...+..
T Consensus        59 ~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~  138 (192)
T 2cjw_A           59 ILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGR  138 (192)
T ss_dssp             EEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHH
Confidence            3799999877 56677888899999999999999999999999988776643 246899999999999665666677777


Q ss_pred             HHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           79 AFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        79 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      .++...+++++++||++|.|++++|++++..+...
T Consensus       139 ~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~  173 (192)
T 2cjw_A          139 AXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLR  173 (192)
T ss_dssp             HHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCceEEeccccCCCHHHHHHHHHHHHHhh
Confidence            77788888999999999999999999999988644

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.86  E-value=3.6e-22  Score=132.23  Aligned_cols=110  Identities=19%  Similarity=0.254  Sum_probs=89.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||||++++..++..++.++|++++|+|++++.+|..+..|+..+.... ....|+++|+||+|+.....  ..+...
T Consensus        54 ~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~  131 (171)
T 1upt_A           54 QVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMAN  131 (171)
T ss_dssp             EEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHH
T ss_pred             EEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHH
Confidence            489999999999999999999999999999999999999888888775542 24689999999999965432  222222


Q ss_pred             H-----HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           80 F-----ADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        80 ~-----~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      .     +...+++++++||++|.|++++|++|.+.+..
T Consensus       132 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          132 SLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS  169 (171)
T ss_dssp             HHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence            2     12234689999999999999999999998863

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.86  E-value=5.2e-21  Score=129.20  Aligned_cols=110  Identities=20%  Similarity=0.297  Sum_probs=90.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC---CCCcEEEEEeCCCCCCCcccCHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS---DNVNKLLVGNKCDLTANKVVSYETA   77 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~   77 (144)
                      +||||+|++++..++..++.++|++++|||++++.++..+..|+..+.....   ...|+++|+||+|+...  ...++.
T Consensus        70 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~  147 (190)
T 2h57_A           70 TVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKV  147 (190)
T ss_dssp             EEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHH
T ss_pred             EEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHH
Confidence            4899999999999999999999999999999999999999998888866532   36899999999999643  334555


Q ss_pred             HHHHH-----HcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           78 KAFAD-----EIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        78 ~~~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      .....     ..+++++++||++|.|++++|++|.+.+..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          148 SQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             HHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             HHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence            44442     124689999999999999999999988753

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.86  E-value=1.4e-21  Score=135.06  Aligned_cols=111  Identities=32%  Similarity=0.578  Sum_probs=97.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||+|+++|..++..++.++|++++|||+++..++..+..|+..+..... ..|+++|+||+|+......  .+...+
T Consensus        67 ~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~--~~~~~~  143 (221)
T 3gj0_A           67 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKVK--AKSIVF  143 (221)
T ss_dssp             EEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST-TCCEEEEEECTTSSSCSSC--GGGCCH
T ss_pred             EEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCcccccccc--HHHHHH
Confidence            4899999999999999999999999999999999999999999999987653 6899999999999654332  245567


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      +...+++++++||++|.|++++|++|...+....
T Consensus       144 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~  177 (221)
T 3gj0_A          144 HRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP  177 (221)
T ss_dssp             HHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence            7788899999999999999999999999987543

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=3.4e-21  Score=129.82  Aligned_cols=109  Identities=22%  Similarity=0.322  Sum_probs=86.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||+|++++..++..++.++|++++|+|++++.+|..+..|+..+.... ....|+++|+||+|+...  ....+...
T Consensus        63 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~  140 (187)
T 1zj6_A           63 LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQ  140 (187)
T ss_dssp             EEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHH
T ss_pred             EEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHH
Confidence            489999999999999999999999999999999999999999988886642 246899999999999643  23444433


Q ss_pred             HHH-----HcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           80 FAD-----EIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        80 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ...     ..+++++++||++|.|++++|++|.+.+.
T Consensus       141 ~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (187)
T 1zj6_A          141 FLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK  177 (187)
T ss_dssp             HHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred             HhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHH
Confidence            332     23468999999999999999999998874

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.86  E-value=2.4e-21  Score=131.21  Aligned_cols=107  Identities=21%  Similarity=0.289  Sum_probs=89.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||||++++..++..++.++|++++|||++++.+|..+..|+..+.... ....|+++|+||+|+..  .+..+++.+
T Consensus        70 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~  147 (190)
T 1m2o_B           70 TTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRS  147 (190)
T ss_dssp             EEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHH
T ss_pred             EEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHH
Confidence            489999999999999999999999999999999999999999888886542 24689999999999964  344555555


Q ss_pred             HHHH------------cCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           80 FADE------------IGIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        80 ~~~~------------~~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      ....            .+++++++||++|.|++++|++|.+.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          148 ALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             HTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             HhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence            4432            23579999999999999999998753

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.85  E-value=4.9e-21  Score=128.71  Aligned_cols=110  Identities=22%  Similarity=0.261  Sum_probs=87.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||||+++|..++..++.++|++++|||++++.+|..+..|+..+... .....|+++++||+|+.....  .++...
T Consensus        63 ~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~  140 (181)
T 1fzq_A           63 NVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAE  140 (181)
T ss_dssp             EEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHH
T ss_pred             EEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHH
Confidence            48999999999999999999999999999999999999998888877543 224689999999999965432  233222


Q ss_pred             HHH-----HcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           80 FAD-----EIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        80 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      ...     ..+++++++||++|.|++++|++|.+.+..
T Consensus       141 ~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          141 GLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             HTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred             HhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence            211     124579999999999999999999887643

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.85  E-value=4.8e-22  Score=134.90  Aligned_cols=109  Identities=18%  Similarity=0.282  Sum_probs=82.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      +||||||+++|..++..++.++|++++|||++++.+|..+..|+..+.... ....|+++|+||+|+.+..  ...+...
T Consensus        76 ~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~  153 (192)
T 2b6h_A           76 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTD  153 (192)
T ss_dssp             EEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHH
T ss_pred             EEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHH
Confidence            489999999999999999999999999999999999999988888875532 2468999999999996532  2222222


Q ss_pred             HHH-----HcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           80 FAD-----EIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        80 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ...     ..+++++++||++|.|++++|++|.+.+.
T Consensus       154 ~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          154 KLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             HTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred             HhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence            111     12357999999999999999999998764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.85  E-value=7.7e-21  Score=127.76  Aligned_cols=110  Identities=18%  Similarity=0.264  Sum_probs=90.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||||++++..++..++.++|++++|+|++++.++..+..|+..+.... ....|+++|+||+|+.....  ..+...
T Consensus        65 ~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~  142 (186)
T 1ksh_A           65 NIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQE  142 (186)
T ss_dssp             EEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHH
T ss_pred             EEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHH
Confidence            489999999999999999999999999999999999999988888876542 24689999999999965432  333332


Q ss_pred             HHH-----HcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           80 FAD-----EIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        80 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      ...     ..+++++++||++|.|++++|++|.+.+.+
T Consensus       143 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  180 (186)
T 1ksh_A          143 ALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS  180 (186)
T ss_dssp             HTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            221     234689999999999999999999998864

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.84  E-value=6.2e-22  Score=133.56  Aligned_cols=111  Identities=18%  Similarity=0.235  Sum_probs=89.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||||++++..++..++.++|++++|+|++++.++..+..|+..+.... ....|+++|+||+|+.....  ..+...
T Consensus        69 ~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~  146 (189)
T 2x77_A           69 EVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAE  146 (189)
T ss_dssp             EEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHH
T ss_pred             EEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHH
Confidence            489999999999999999999999999999999999999888888775542 24689999999999965422  222222


Q ss_pred             HH-----HHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           80 FA-----DEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        80 ~~-----~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      ..     ...+++++++||++|.|++++|++|.+.+...
T Consensus       147 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          147 QLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             HTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred             HhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence            21     12245799999999999999999999998754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.84  E-value=1.1e-21  Score=132.52  Aligned_cols=109  Identities=26%  Similarity=0.377  Sum_probs=87.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      +||||+|+++|..++..++.++|++++|||++++.++..+..|+..+.... ....|+++|+||+|+....  ...+...
T Consensus        70 ~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~  147 (188)
T 1zd9_A           70 KLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIE  147 (188)
T ss_dssp             EEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHH
T ss_pred             EEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHH
Confidence            489999999999999999999999999999999999999988888876542 2468999999999996532  2222222


Q ss_pred             HHH-----HcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           80 FAD-----EIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        80 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ...     ..+++++++||++|.|++++|++|.+.+.
T Consensus       148 ~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~  184 (188)
T 1zd9_A          148 KMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK  184 (188)
T ss_dssp             HTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred             HhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            211     12357899999999999999999988764

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.84  E-value=8.7e-22  Score=145.10  Aligned_cols=114  Identities=25%  Similarity=0.274  Sum_probs=94.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----------QESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~   69 (144)
                      +|||||||++|+.+|..|+++++++|||||+++          ..++.+...|+..+.... ..++|++|++||+|+...
T Consensus       196 ~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~  275 (353)
T 1cip_A          196 KMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEE  275 (353)
T ss_dssp             EEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHH
T ss_pred             EEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhh
Confidence            589999999999999999999999999999998          457888888888876542 246999999999998532


Q ss_pred             c---------------ccCHHHHHHHHH-----------HcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           70 K---------------VVSYETAKAFAD-----------EIGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        70 ~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      +               .++.+++..++.           ..++.+++|||+++.|+.++|+++.+.+....
T Consensus       276 ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~  346 (353)
T 1cip_A          276 KIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN  346 (353)
T ss_dssp             HHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             hccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence            2               245677777776           24568899999999999999999999987644

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.84  E-value=3.9e-21  Score=130.63  Aligned_cols=108  Identities=22%  Similarity=0.341  Sum_probs=86.8

Q ss_pred             CceeccchhHHhhhh---hhhhcCCCEEEEEEeCCCH--HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC------
Q 032243            1 MQWDTAGQERFRTIT---SSYYRGAHGIIIVYDVTDQ--ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN------   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~---~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------   69 (144)
                      +||||+|+++|..+.   ..++.++|++|+|||++++  .++..+..|+..+.... ...|+++|+||+|+.+.      
T Consensus        72 ~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~  150 (196)
T 3llu_A           72 QIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIET  150 (196)
T ss_dssp             EEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHH
T ss_pred             EEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHH
Confidence            489999999998776   8999999999999999997  67777777777765443 36899999999998642      


Q ss_pred             -cccCHHHHHHHHH----HcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           70 -KVVSYETAKAFAD----EIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        70 -~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                       +.+.......++.    ..+++++++||++ .|++++|+.+++.+
T Consensus       151 ~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          151 QRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             HHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             HhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence             2333344556666    5677999999999 99999999998764

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.84  E-value=7.2e-21  Score=127.68  Aligned_cols=107  Identities=21%  Similarity=0.309  Sum_probs=86.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      +||||+|++++..++..++.++|++++|||+++..+|..+..|+..+.... ....|+++|+||+|+...  ....+...
T Consensus        68 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~  145 (181)
T 2h17_A           68 LMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQ  145 (181)
T ss_dssp             EEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHH
T ss_pred             EEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHH
Confidence            489999999999999999999999999999999999999988888876542 246899999999999643  22334333


Q ss_pred             HHH-----HcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           80 FAD-----EIGIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        80 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      ...     ..+++++++||++|.|++++|++|.+.
T Consensus       146 ~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          146 FLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             HTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred             HhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence            321     234589999999999999999998753

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.84  E-value=1.5e-20  Score=136.69  Aligned_cols=111  Identities=27%  Similarity=0.494  Sum_probs=97.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCC----------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTAN----------   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~----------   69 (144)
                      +||||||+++|..++..++.++|++++|||++++.+|..+. .|+..+..... ..|+++|+||+|+...          
T Consensus       206 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~  284 (332)
T 2wkq_A          206 GLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEK  284 (332)
T ss_dssp             EEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHT
T ss_pred             EEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhcccc
Confidence            48999999999999999999999999999999999999987 68777776654 6899999999998543          


Q ss_pred             --cccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           70 --KVVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        70 --~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                        +.+...++..++...+. +++++||++|.|++++|+.|.+.+..
T Consensus       285 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          285 KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             TCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             ccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence              45667788888988887 99999999999999999999988763

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.83  E-value=1.6e-20  Score=125.69  Aligned_cols=111  Identities=20%  Similarity=0.274  Sum_probs=86.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||||++++..++..++.++|++++|+|++++.++..+..|+..+.... ....|+++|+||+|+...  ....+...
T Consensus        65 ~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~  142 (183)
T 1moz_A           65 NVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSK  142 (183)
T ss_dssp             EEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHH
T ss_pred             EEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHH
Confidence            489999999999999999999999999999999999999988888886543 246899999999998643  22334333


Q ss_pred             HHHH-----cCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           80 FADE-----IGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        80 ~~~~-----~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      ....     .+++++++||++|.|++++|++|.+.+..+
T Consensus       143 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  181 (183)
T 1moz_A          143 ELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE  181 (183)
T ss_dssp             HTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             HhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence            3221     234799999999999999999999988653

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.73  E-value=2.7e-22  Score=137.01  Aligned_cols=109  Identities=30%  Similarity=0.549  Sum_probs=92.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCc---------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANK---------   70 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~---------   70 (144)
                      +||||||+++|..++..++.++|++++|||++++.++..+. .|+..+..... ..|+++|+||+|+.+..         
T Consensus        81 ~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~  159 (204)
T 3th5_A           81 GLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEK  159 (204)
Confidence            48999999999999999999999999999999999999886 67777765543 68999999999996532         


Q ss_pred             ---ccCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHH
Q 032243           71 ---VVSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        71 ---~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                         .+...++..+++..+. +++++||++|.|++++|+.|.+.+
T Consensus       160 ~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          160 KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence               3444556667777776 899999999999999999988764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.82  E-value=7e-21  Score=128.19  Aligned_cols=112  Identities=21%  Similarity=0.367  Sum_probs=89.8

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCH-HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC---HHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ-ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS---YET   76 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~---~~~   76 (144)
                      ++|||+|+++|..++..++.++|++++|||++++ .+++.+..|+..+.... ...|+++|+||+|+.....+.   ...
T Consensus        59 ~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~  137 (184)
T 2zej_A           59 NVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKI  137 (184)
T ss_dssp             EEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHH
T ss_pred             EEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHH
Confidence            4899999999999999999999999999999986 58999999999887654 358999999999986433321   122


Q ss_pred             HHHHHHHcCCc----EEEeecCCCC-CHHHHHHHHHHHHHHh
Q 032243           77 AKAFADEIGIP----FMETSAKDST-NVEQAFMAMAASIKDR  113 (144)
Q Consensus        77 ~~~~~~~~~~~----~~~~Sa~~~~-~i~~l~~~i~~~~~~~  113 (144)
                      ...+++..+++    ++++||+++. +++++++.|.+.+...
T Consensus       138 ~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~  179 (184)
T 2zej_A          138 TKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF  179 (184)
T ss_dssp             HHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhcc
Confidence            33444445666    9999999996 9999999998887643

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.82  E-value=3.7e-19  Score=121.11  Aligned_cols=114  Identities=47%  Similarity=0.787  Sum_probs=100.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||+|++++..++..++.+++++++|+|+++..++..+..|+..+........|+++++||.|+.....+...++..+
T Consensus        57 ~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l  136 (199)
T 2f9l_A           57 QIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAF  136 (199)
T ss_dssp             EEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHH
Confidence            47999999999999999999999999999999999999888888877665545689999999999966556667778888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      +...++.++++||+++.|++++|+.|.+.+....
T Consensus       137 ~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~~  170 (199)
T 2f9l_A          137 AEKNNLSFIETSALDSTNVEEAFKNILTEIYRIV  170 (199)
T ss_dssp             HHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            8888999999999999999999999999987654

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.82  E-value=7e-21  Score=142.02  Aligned_cols=116  Identities=22%  Similarity=0.168  Sum_probs=92.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----------QESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~   69 (144)
                      +|||||||++|+.+|..|+++++++|||||+++          ..+|.+...|+..+.... ..++|++|++||.|+...
T Consensus       220 ~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~  299 (402)
T 1azs_C          220 HMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAE  299 (402)
T ss_dssp             EEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHH
T ss_pred             eecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhh
Confidence            589999999999999999999999999999999          789999999999887642 347899999999998432


Q ss_pred             cc---c---------------------------CHHHHHHHH-----HH--------cCCcEEEeecCCCCCHHHHHHHH
Q 032243           70 KV---V---------------------------SYETAKAFA-----DE--------IGIPFMETSAKDSTNVEQAFMAM  106 (144)
Q Consensus        70 ~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~~~~~i~~l~~~i  106 (144)
                      +.   +                           ..+++..++     ..        .++.+++|||+++.||.++|+.+
T Consensus       300 ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v  379 (402)
T 1azs_C          300 KVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDC  379 (402)
T ss_dssp             HHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             hhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHH
Confidence            21   1                           123444443     21        23567899999999999999999


Q ss_pred             HHHHHHhhcc
Q 032243          107 AASIKDRMAS  116 (144)
Q Consensus       107 ~~~~~~~~~~  116 (144)
                      .+.+......
T Consensus       380 ~~~I~~~~l~  389 (402)
T 1azs_C          380 RDIIQRMHLR  389 (402)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9988765443

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.81  E-value=9.6e-21  Score=139.98  Aligned_cols=115  Identities=17%  Similarity=0.170  Sum_probs=87.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCC----------HHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----------QESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~   69 (144)
                      +|||||||++++..|..|+++++++|||||+++          ..++.+...|+..+.... ..++|++|++||.|+...
T Consensus       204 ~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~  283 (362)
T 1zcb_A          204 KMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEE  283 (362)
T ss_dssp             EEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHH
T ss_pred             EEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhh
Confidence            589999999999999999999999999999999          678998888888886542 246899999999998532


Q ss_pred             c----------------ccCHHHHHHHHH-----------HcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243           70 K----------------VVSYETAKAFAD-----------EIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA  115 (144)
Q Consensus        70 ~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~  115 (144)
                      +                .++.+++..++.           ..++.+++|||+++.|+.++|+++.+.+.....
T Consensus       284 ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l  356 (362)
T 1zcb_A          284 KVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNL  356 (362)
T ss_dssp             HTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHH
Confidence            1                255667666652           234688999999999999999999999876544

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.81  E-value=5.3e-21  Score=139.07  Aligned_cols=109  Identities=15%  Similarity=0.231  Sum_probs=82.1

Q ss_pred             CceeccchhHHhh---hhhhhhcCCCEEEEEEeCCCH--HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC------
Q 032243            1 MQWDTAGQERFRT---ITSSYYRGAHGIIIVYDVTDQ--ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN------   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~---~~~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~------   69 (144)
                      ||||||||++|..   ++..|+++++++|+|||++++  ..+..+..|+..+.... +++|+++++||+|+...      
T Consensus        49 qIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-~~ipillvgNK~DL~~~~~R~~~  127 (331)
T 3r7w_B           49 AVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN-PSINIEVLIHKVDGLSEDFKVDA  127 (331)
T ss_dssp             EEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHC-TTCEEEEECCCCCSSCSHHHHHH
T ss_pred             EEEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcC-CCCcEEEEEECcccCchhhhhhH
Confidence            6999999999974   468999999999999999987  33333344455444443 46999999999999654      


Q ss_pred             -cccCHHHHHHHHHH----cCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           70 -KVVSYETAKAFADE----IGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        70 -~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                       +.+..+++..+++.    .++.+++|||++ .++.++|..|+..+.
T Consensus       128 ~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li  173 (331)
T 3r7w_B          128 QRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLI  173 (331)
T ss_dssp             HHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSS
T ss_pred             HHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHH
Confidence             23444455555654    567999999998 699999998887653

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.81  E-value=9.8e-21  Score=139.51  Aligned_cols=115  Identities=20%  Similarity=0.282  Sum_probs=90.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCC----------CHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVT----------DQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~   69 (144)
                      +|||||||++|+.+|..|+++++++|||||++          +..+|.+...|+..+.... ..+.|++|++||.|+...
T Consensus       186 ~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~  265 (354)
T 2xtz_A          186 RLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEK  265 (354)
T ss_dssp             EEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHH
T ss_pred             EEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhh
Confidence            58999999999999999999999999999998          6778998888888886542 246899999999998432


Q ss_pred             cc--c-------------------CHHHHHHHHHH----------------cCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           70 KV--V-------------------SYETAKAFADE----------------IGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        70 ~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      +.  +                   +.+++..++..                ..+.+++|||+++.|++++|+++.+.+..
T Consensus       266 k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~  345 (354)
T 2xtz_A          266 KVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRR  345 (354)
T ss_dssp             HTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHH
Confidence            11  1                   13455555432                12356899999999999999999999876


Q ss_pred             hhc
Q 032243          113 RMA  115 (144)
Q Consensus       113 ~~~  115 (144)
                      ...
T Consensus       346 ~~l  348 (354)
T 2xtz_A          346 RNL  348 (354)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.81  E-value=1.7e-20  Score=136.66  Aligned_cols=115  Identities=22%  Similarity=0.219  Sum_probs=92.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCC----------CHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVT----------DQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~   69 (144)
                      ++||||||++|+.+|.+|+++++++|||+|++          +..++.+...|+..+.... ..++|++|++||+|+...
T Consensus       170 ~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~  249 (327)
T 3ohm_A          170 RMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEE  249 (327)
T ss_dssp             EEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHH
T ss_pred             EEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhh
Confidence            58999999999999999999999999999665          5567777777777775432 246999999999998542


Q ss_pred             c----------------ccCHHHHHHHHH----------HcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243           70 K----------------VVSYETAKAFAD----------EIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA  115 (144)
Q Consensus        70 ~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~  115 (144)
                      +                ..+.+++..++.          ..++.+++|||+++.|++.+|+.+.+.+.+...
T Consensus       250 ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~l  321 (327)
T 3ohm_A          250 KIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL  321 (327)
T ss_dssp             HTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHhH
Confidence            2                356677776643          234678899999999999999999999986543

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.80  E-value=1.1e-19  Score=132.88  Aligned_cols=110  Identities=19%  Similarity=0.287  Sum_probs=83.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      +||||||+++|..++..++.++|++|+|||++++.+|..+..|+..+.... ...+|+++|+||+|+.....  ..+...
T Consensus       212 ~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~  289 (329)
T 3o47_A          212 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITD  289 (329)
T ss_dssp             EEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHH
T ss_pred             EEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHH
Confidence            489999999999999999999999999999999999999988777765433 24689999999999965432  233222


Q ss_pred             HHHH-----cCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           80 FADE-----IGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        80 ~~~~-----~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      ....     .+++++++||++|.|++++|+.|.+.+..
T Consensus       290 ~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~  327 (329)
T 3o47_A          290 KLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN  327 (329)
T ss_dssp             HHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred             HhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence            2211     23479999999999999999999988753

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.80  E-value=6.9e-20  Score=129.59  Aligned_cols=105  Identities=22%  Similarity=0.355  Sum_probs=86.0

Q ss_pred             ccchhHHhhhhhhhhc---------------------CCCEEEEEEeCCCH--HHHHHHHHHHHHHHHh-cCCCCcEEEE
Q 032243            5 TAGQERFRTITSSYYR---------------------GAHGIIIVYDVTDQ--ESFNNVKQWLNEIDRY-ASDNVNKLLV   60 (144)
Q Consensus         5 t~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~-~~~~~p~ilv   60 (144)
                      ++|+++|..++..++.                     ++|++|+|||++++  .+|+.+..|+..+... .....|+++|
T Consensus       125 ~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV  204 (255)
T 3c5h_A          125 RAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVV  204 (255)
T ss_dssp             HHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEE
Confidence            7888888888888887                     79999999999998  8999999999888665 3346899999


Q ss_pred             EeCCCCCCCcccCHHHHHHHHHH-cCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           61 GNKCDLTANKVVSYETAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        61 ~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +||.|+...+.+  +++..++.. .+++++++||++|.|++++|++|.+.+.
T Consensus       205 ~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~  254 (255)
T 3c5h_A          205 LTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID  254 (255)
T ss_dssp             EECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            999998544333  455666665 4789999999999999999999988763

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.78  E-value=1e-18  Score=119.93  Aligned_cols=109  Identities=18%  Similarity=0.281  Sum_probs=77.1

Q ss_pred             CceeccchhHHhh-hhhhhhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCCCcccCH-
Q 032243            1 MQWDTAGQERFRT-ITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRY---ASDNVNKLLVGNKCDLTANKVVSY-   74 (144)
Q Consensus         1 qi~Dt~G~~~~~~-~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~~~~~~-   74 (144)
                      +||||||+++|.. ++..|+.++|++++|||+++.. ++..+..++..+...   .....|+++|+||+|+........ 
T Consensus        57 ~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~  136 (214)
T 2fh5_B           57 TLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLI  136 (214)
T ss_dssp             EEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHH
T ss_pred             EEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHH
Confidence            4899999999998 8999999999999999999853 466665555444222   234689999999999965433210 


Q ss_pred             -HHHHHHHH---------------------------------Hc--CCcEEEeecCCC------CCHHHHHHHHHHH
Q 032243           75 -ETAKAFAD---------------------------------EI--GIPFMETSAKDS------TNVEQAFMAMAAS  109 (144)
Q Consensus        75 -~~~~~~~~---------------------------------~~--~~~~~~~Sa~~~------~~i~~l~~~i~~~  109 (144)
                       +.+.....                                 ..  +++++++||++|      .|++++|++|.+.
T Consensus       137 ~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          137 QQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             HHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence             11111111                                 01  457999999999      9999999999875

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.77  E-value=1.8e-19  Score=131.81  Aligned_cols=112  Identities=20%  Similarity=0.221  Sum_probs=90.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCC----------CHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVT----------DQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~   69 (144)
                      +|||||||++|+.+|..|+++++++|||+|++          +..++.+...|+..+.... ..++|++|++||+|+...
T Consensus       164 ~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~e  243 (340)
T 4fid_A          164 HLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEE  243 (340)
T ss_dssp             EEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHH
T ss_pred             ccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhh
Confidence            58999999999999999999999999999998          6678888888888876543 247899999999998431


Q ss_pred             c---------------ccCHHHHHHHHHH-c--------------------------CCcEEEeecCCCCCHHHHHHHHH
Q 032243           70 K---------------VVSYETAKAFADE-I--------------------------GIPFMETSAKDSTNVEQAFMAMA  107 (144)
Q Consensus        70 ~---------------~~~~~~~~~~~~~-~--------------------------~~~~~~~Sa~~~~~i~~l~~~i~  107 (144)
                      +               ....+++..++.. .                          .+.++++||+++.++..+|+.+.
T Consensus       244 ki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~  323 (340)
T 4fid_A          244 KLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAV  323 (340)
T ss_dssp             HHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHH
T ss_pred             hcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHH
Confidence            1               1134555444332 2                          36789999999999999999999


Q ss_pred             HHHHH
Q 032243          108 ASIKD  112 (144)
Q Consensus       108 ~~~~~  112 (144)
                      +.+..
T Consensus       324 ~~Il~  328 (340)
T 4fid_A          324 DVIMK  328 (340)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99886

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.77  E-value=7.4e-19  Score=127.39  Aligned_cols=109  Identities=19%  Similarity=0.353  Sum_probs=87.8

Q ss_pred             CceeccchhHH-----hhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCC--Ccc
Q 032243            1 MQWDTAGQERF-----RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA--SDNVNKLLVGNKCDLTA--NKV   71 (144)
Q Consensus         1 qi~Dt~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~--~~~   71 (144)
                      +||||||+++|     ..++..++.++|++++|||+++..+|+++..|...+....  ..+.|+++++||+|+..  .+.
T Consensus        55 ~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~  134 (307)
T 3r7w_A           55 NLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKRE  134 (307)
T ss_dssp             EEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHH
T ss_pred             EEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhh
Confidence            48999999998     7788999999999999999999999998877655443321  23699999999999865  232


Q ss_pred             ----cCHHHHHHHHHHcC---CcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           72 ----VSYETAKAFADEIG---IPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        72 ----~~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                          +...++..+++.+|   ++++++||++ .++.++|..++..+
T Consensus       135 ~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l  179 (307)
T 3r7w_A          135 ELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL  179 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence                33466777888887   6999999999 89999988877643

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.77  E-value=2.9e-18  Score=119.06  Aligned_cols=113  Identities=21%  Similarity=0.200  Sum_probs=82.1

Q ss_pred             Cceeccch------hHH---hhhhhhhhcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQ------ERF---RTITSSYYRGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~------~~~---~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   69 (144)
                      +||||||+      ++.   ...+..++..+|++++|||++++.+|.  ....|+..+.... ...|+++|+||+|+...
T Consensus        79 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~  157 (228)
T 2qu8_A           79 QIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNM  157 (228)
T ss_dssp             EEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC-
T ss_pred             EEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCc
Confidence            48999999      431   122345678899999999999987764  2234555554432 26899999999999766


Q ss_pred             cccCHH---HHHHHHHHcC--CcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           70 KVVSYE---TAKAFADEIG--IPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        70 ~~~~~~---~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      ..+...   ....++...+  ++++++||++|.|++++|++|.+.+....
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~  207 (228)
T 2qu8_A          158 DSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQ  207 (228)
T ss_dssp             -CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence            665543   3455666666  79999999999999999999999987543

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.77  E-value=4.1e-18  Score=115.39  Aligned_cols=110  Identities=49%  Similarity=0.832  Sum_probs=96.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||+|++++..++..++.+++++++|+|.++..+|+.+..|+..+........|+++++||.|+.....+....+..+
T Consensus        81 ~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l  160 (191)
T 1oix_A           81 QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAF  160 (191)
T ss_dssp             EEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHH
Confidence            36999999999999999999999999999999999999888888877665545689999999999965555667788888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      +...++.++++||+++.|++++|+.|.+.+
T Consensus       161 ~~~~~~~~ld~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          161 AEKNGLSFIETSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             HHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            888899999999999999999999998764

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.76  E-value=5e-19  Score=117.13  Aligned_cols=103  Identities=18%  Similarity=0.192  Sum_probs=79.2

Q ss_pred             CceeccchhHHh------hhhhhhhc--CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243            1 MQWDTAGQERFR------TITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         1 qi~Dt~G~~~~~------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      ++|||||+++|.      .+...|+.  ++|++++|+|+++...   ...|+..+...   ..|+++|+||.|+.....+
T Consensus        53 ~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~  126 (165)
T 2wji_A           53 KVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALER---NLYLTLQLMEM---GANLLLALNKMDLAKSLGI  126 (165)
T ss_dssp             EEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHH---HHHHHHHHHHT---TCCEEEEEECHHHHHHTTC
T ss_pred             EEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhH---hHHHHHHHHhc---CCCEEEEEEchHhccccCh
Confidence            489999998774      34566665  8999999999988543   34566665442   5899999999998533333


Q ss_pred             CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      .. +...+++..+++++++||++|.|++++|+++.+.+
T Consensus       127 ~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          127 EI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             CC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred             hh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence            22 35567777889999999999999999999998765

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.76  E-value=8e-19  Score=126.94  Aligned_cols=101  Identities=19%  Similarity=0.246  Sum_probs=84.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||  +++|+.+++.|+.++|++++|||++++. +++.+..|+..+..   .+.|+++|+||+|+.+...+  ++...
T Consensus        66 ~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~  138 (301)
T 1u0l_A           66 VIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRE  138 (301)
T ss_dssp             EEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHH
T ss_pred             EEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHH
Confidence            58999  9999999999999999999999999987 78888999887755   25899999999999653332  34556


Q ss_pred             HHHHcC--CcEEEeecCCCCCHHHHHHHHHH
Q 032243           80 FADEIG--IPFMETSAKDSTNVEQAFMAMAA  108 (144)
Q Consensus        80 ~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~  108 (144)
                      +++.++  ++++++||++|.|++++|..+..
T Consensus       139 ~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          139 LEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            666666  89999999999999999987653

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.75  E-value=3.6e-18  Score=114.70  Aligned_cols=111  Identities=23%  Similarity=0.324  Sum_probs=83.4

Q ss_pred             Cceeccc-----------hhHHhhhhhhhhcC-CCEEEEEEeCCCHHHHHHH-HHHHHH--------H-HHhcCCCCcEE
Q 032243            1 MQWDTAG-----------QERFRTITSSYYRG-AHGIIIVYDVTDQESFNNV-KQWLNE--------I-DRYASDNVNKL   58 (144)
Q Consensus         1 qi~Dt~G-----------~~~~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------~-~~~~~~~~p~i   58 (144)
                      ++|||||           ++++..++..++.+ ++++++++++.+..++..+ ..|...        + ........|++
T Consensus        47 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pii  126 (190)
T 2cxx_A           47 KIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTI  126 (190)
T ss_dssp             EEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEE
T ss_pred             EEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceE
Confidence            4799999           88899999988887 7777666766666677766 445432        1 11222368999


Q ss_pred             EEEeCCCCCCCcccCHHHHHHHHHHcCCc-------EEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           59 LVGNKCDLTANKVVSYETAKAFADEIGIP-------FMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        59 lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      +|+||+|+....   ......+++.++.+       ++++||++|.|++++|++|.+.+....
T Consensus       127 lv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          127 VAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             EEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             EEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence            999999986543   45666777777764       699999999999999999999887543

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.74  E-value=6.5e-18  Score=112.36  Aligned_cols=104  Identities=19%  Similarity=0.192  Sum_probs=78.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA   77 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~   77 (144)
                      ++|||||+++|..++..++..+|++++|+|+++   +.+++.+    ..+.   ....|+++|+||+|+...   ...+.
T Consensus        58 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l----~~~~---~~~~p~ilv~nK~Dl~~~---~~~~~  127 (178)
T 2lkc_A           58 TFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAI----NHAK---AANVPIIVAINKMDKPEA---NPDRV  127 (178)
T ss_dssp             EESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHH----HHHG---GGSCCEEEEEETTTSSCS---CHHHH
T ss_pred             EEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH----HHHH---hCCCCEEEEEECccCCcC---CHHHH
Confidence            489999999999999999999999999999988   3443332    2222   235899999999999643   22333


Q ss_pred             HHHHHHcC---------CcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           78 KAFADEIG---------IPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        78 ~~~~~~~~---------~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      .......+         .+++++||++|.|++++|++|.+.+....
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~  173 (178)
T 2lkc_A          128 MQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEE  173 (178)
T ss_dssp             HHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhhc
Confidence            33322221         47999999999999999999999887543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.72  E-value=1.3e-17  Score=112.57  Aligned_cols=106  Identities=14%  Similarity=0.216  Sum_probs=78.7

Q ss_pred             Cceeccc----------hhHHhhhhhhhhcCC---CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            1 MQWDTAG----------QERFRTITSSYYRGA---HGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         1 qi~Dt~G----------~~~~~~~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      ++|||||          +++|..++..++..+   |++++|+|+++..++.+.. ++..+..   ...|+++|+||+|+.
T Consensus        72 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~  147 (195)
T 1svi_A           72 HFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKI  147 (195)
T ss_dssp             EEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGS
T ss_pred             EEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccC
Confidence            4899999          889999999998877   9999999999876665532 2222222   358999999999997


Q ss_pred             CCcccCHHHHHHHHH----HcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           68 ANKVVSYETAKAFAD----EIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        68 ~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ....+. .....+.+    ..+.+++++||++|.|++++|++|.+.+.
T Consensus       148 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          148 PKGKWD-KHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             CGGGHH-HHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             ChHHHH-HHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence            654432 12222222    23468999999999999999999988763

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.71  E-value=9.8e-18  Score=129.56  Aligned_cols=108  Identities=19%  Similarity=0.311  Sum_probs=89.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||||+++|..++..++.++|++|+|+|+++.   +.+..|+..+..+.. +.|+++|+||+|+.....+..++...+
T Consensus       101 ~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~  176 (535)
T 3dpu_A          101 HFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINER  176 (535)
T ss_dssp             EEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHH
T ss_pred             EEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHHHHHHH
Confidence            4899999999999999999999999999999764   556678888877654 589999999999977677777778888


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      +...+.+++++||++|.|++++++.|.+.+..
T Consensus       177 ~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~  208 (535)
T 3dpu_A          177 FPAIENRFHRISCKNGDGVESIAKSLKSAVLH  208 (535)
T ss_dssp             CGGGTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred             HHhcCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence            88888999999999999999999999998864

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.71  E-value=6.9e-17  Score=117.10  Aligned_cols=108  Identities=17%  Similarity=0.127  Sum_probs=87.6

Q ss_pred             Cceeccchh----------HHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc
Q 032243            1 MQWDTAGQE----------RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK   70 (144)
Q Consensus         1 qi~Dt~G~~----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~   70 (144)
                      .||||||+.          .+...+..++.++|++++|+|+++..++.+...|+..+...   ..|+++|+||+|+....
T Consensus        62 ~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl~~~~  138 (308)
T 3iev_A           62 IFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDKIGPA  138 (308)
T ss_dssp             EEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGGSSSG
T ss_pred             EEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccCCCCH
Confidence            379999983          35567788899999999999999887777776667776653   58999999999997334


Q ss_pred             ccCHHHHHHHHHHcC--CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           71 VVSYETAKAFADEIG--IPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        71 ~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      .........+.+..+  .+++++||++|.|++++|+.|...+.
T Consensus       139 ~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~  181 (308)
T 3iev_A          139 KNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLP  181 (308)
T ss_dssp             GGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence            444566666777765  68999999999999999999998874

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.70  E-value=1.3e-17  Score=109.16  Aligned_cols=101  Identities=16%  Similarity=0.139  Sum_probs=74.0

Q ss_pred             CceeccchhH-------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC
Q 032243            1 MQWDTAGQER-------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS   73 (144)
Q Consensus         1 qi~Dt~G~~~-------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~   73 (144)
                      ++|||||+.+       +...+..++.++|++++|+|.++..+...  .++..+...  ...|+++|+||+|+....   
T Consensus        52 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~---  124 (161)
T 2dyk_A           52 LLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHE---  124 (161)
T ss_dssp             EEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGG---
T ss_pred             EEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccch---
Confidence            4899999986       56667788999999999999987533221  222222222  258999999999985432   


Q ss_pred             HHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHH
Q 032243           74 YETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        74 ~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                       ++...++ ..++ +++++||++|.|++++|+++.+.+
T Consensus       125 -~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          125 -LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             -GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred             -HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence             2223344 5666 899999999999999999998764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.69  E-value=1.9e-17  Score=111.16  Aligned_cols=106  Identities=19%  Similarity=0.209  Sum_probs=82.3

Q ss_pred             CceeccchhHHh------hhhhhhhc--CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243            1 MQWDTAGQERFR------TITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         1 qi~Dt~G~~~~~------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      ++|||||++++.      .++..++.  .+|++++|+|.++   ++....|+..+..   ...|+++++||.|+.....+
T Consensus        57 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~  130 (188)
T 2wjg_A           57 KVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGI  130 (188)
T ss_dssp             EEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTC
T ss_pred             EEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccc
Confidence            489999998774      45667764  5999999999875   4555667666654   35899999999998543333


Q ss_pred             CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      . .....+++..+++++++||+++.|++++|+++...+...
T Consensus       131 ~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~  170 (188)
T 2wjg_A          131 E-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDK  170 (188)
T ss_dssp             C-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred             h-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            2 345667778889999999999999999999999988643

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.68  E-value=4.9e-18  Score=113.25  Aligned_cols=103  Identities=17%  Similarity=0.183  Sum_probs=75.5

Q ss_pred             CceeccchhHHh----h----hhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243            1 MQWDTAGQERFR----T----ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         1 qi~Dt~G~~~~~----~----~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      ++|||||++++.    .    ....++.++|++++|+|+++..++.. ..|+..+........|+++|+||+|+..... 
T Consensus        55 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-  132 (172)
T 2gj8_A           55 HIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL-  132 (172)
T ss_dssp             EEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-
T ss_pred             EEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh-
Confidence            489999986421    1    12246889999999999998877763 4677777665545689999999999843211 


Q ss_pred             CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                            .++...+.+++++||++|.|++++|++|.+.+.
T Consensus       133 ------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~  165 (172)
T 2gj8_A          133 ------GMSEVNGHALIRLSARTGEGVDVLRNHLKQSMG  165 (172)
T ss_dssp             ------EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred             ------hhhhccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence                  011123568999999999999999999988763

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.68  E-value=1.7e-16  Score=106.73  Aligned_cols=105  Identities=13%  Similarity=0.229  Sum_probs=78.1

Q ss_pred             Cceeccc----------hhHHhhhhhhhhcCC---CEEEEEEeCCCHHH--HHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 032243            1 MQWDTAG----------QERFRTITSSYYRGA---HGIIIVYDVTDQES--FNNVKQWLNEIDRYASDNVNKLLVGNKCD   65 (144)
Q Consensus         1 qi~Dt~G----------~~~~~~~~~~~~~~~---d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ilv~nK~D   65 (144)
                      ++|||||          ++.|..++..++..+   |++++|+|.++..+  ...+..|+...      ..|+++|+||+|
T Consensus        71 ~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~D  144 (195)
T 3pqc_A           71 YFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMD  144 (195)
T ss_dssp             EEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGG
T ss_pred             EEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChh
Confidence            3799999          888999998888776   99999999887533  23333343332      589999999999


Q ss_pred             CCCCccc--CHHHHHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           66 LTANKVV--SYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        66 l~~~~~~--~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +.+....  ..+++..++...+ ++++++||++|.|++++|++|.+.+.
T Consensus       145 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          145 KVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             GSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             cCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence            8654322  1233444454433 69999999999999999999998874

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.66  E-value=6.2e-17  Score=115.53  Aligned_cols=103  Identities=19%  Similarity=0.202  Sum_probs=79.4

Q ss_pred             CceeccchhHHh------hhhhhhhc--CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243            1 MQWDTAGQERFR------TITSSYYR--GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         1 qi~Dt~G~~~~~------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      ++|||||+.++.      .+++.|+.  ++|++++|+|+++..+.   ..|...+..   ...|+++++||+|+.....+
T Consensus        52 ~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~  125 (272)
T 3b1v_A           52 EIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGK  125 (272)
T ss_dssp             EEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTC
T ss_pred             EEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCc
Confidence            489999998775      45677775  69999999999875443   345444443   25899999999998543333


Q ss_pred             CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      . .+...+.+.++++++++||++|.|++++|+++...+
T Consensus       126 ~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~  162 (272)
T 3b1v_A          126 K-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTT  162 (272)
T ss_dssp             C-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred             H-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            2 345667778899999999999999999999998764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.65  E-value=3.6e-16  Score=118.77  Aligned_cols=112  Identities=14%  Similarity=0.115  Sum_probs=84.4

Q ss_pred             Cceeccc----------hhHHhhhhhh-hhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAG----------QERFRTITSS-YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G----------~~~~~~~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   69 (144)
                      +||||||          +++|..++.. +++++|++++|+|+++.-... ...|+..+..   ...|+++|+||+|+.+.
T Consensus       246 ~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~---~~~~~ilv~NK~Dl~~~  321 (456)
T 4dcu_A          246 VIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE---AGKAVVIVVNKWDAVDK  321 (456)
T ss_dssp             EETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH---TTCEEEEEEECGGGSCC
T ss_pred             EEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH---cCCCEEEEEEChhcCCC
Confidence            4899999          7888877664 789999999999998743322 2334444433   25899999999999766


Q ss_pred             cccCHHHHHHHHHHc-----CCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243           70 KVVSYETAKAFADEI-----GIPFMETSAKDSTNVEQAFMAMAASIKDRMAS  116 (144)
Q Consensus        70 ~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~  116 (144)
                      .....++....++..     +.+++++||++|.|++++|+.+.+.+......
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~  373 (456)
T 4dcu_A          322 DESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLR  373 (456)
T ss_dssp             CSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred             chHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhccc
Confidence            555556655555544     46999999999999999999999988765443

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.65  E-value=4.8e-17  Score=111.81  Aligned_cols=98  Identities=19%  Similarity=0.283  Sum_probs=71.7

Q ss_pred             CceeccchhHHhhhhhhhhcC----CCEEEEEEeCC-CHHHHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCCCcc
Q 032243            1 MQWDTAGQERFRTITSSYYRG----AHGIIIVYDVT-DQESFNNVKQWLNEIDRY----ASDNVNKLLVGNKCDLTANKV   71 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~----~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ilv~nK~Dl~~~~~   71 (144)
                      ++|||||+++++..+..++.+    +|++++|+|++ ++.+|..+..|+..+...    .....|+++|+||+|+.....
T Consensus        58 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  137 (218)
T 1nrj_B           58 TLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  137 (218)
T ss_dssp             EEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             EEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCC
Confidence            479999999999999999877    89999999999 888888888888777554    234799999999999976554


Q ss_pred             cC------HHHHHHHHHHcCCcEEEeecCCCCC
Q 032243           72 VS------YETAKAFADEIGIPFMETSAKDSTN   98 (144)
Q Consensus        72 ~~------~~~~~~~~~~~~~~~~~~Sa~~~~~   98 (144)
                      +.      ..++..++...+.+++++||++|.+
T Consensus       138 ~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          138 PSKIKDALESEIQKVIERRKKSLNEVERKINEE  170 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            32      2334555555667889999998754

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.65  E-value=1.2e-16  Score=113.28  Aligned_cols=104  Identities=19%  Similarity=0.174  Sum_probs=80.0

Q ss_pred             CceeccchhHHhh------hhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243            1 MQWDTAGQERFRT------ITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         1 qi~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      +||||||+.++..      +.+.|+  .++|++++|+|+++..+.   ..|+..+...   ..|+++++||+|+...+.+
T Consensus        55 ~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~---~~pvilv~NK~Dl~~~~~i  128 (258)
T 3a1s_A           55 NLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQS---LYLLLEILEM---EKKVILAMTAIDEAKKTGM  128 (258)
T ss_dssp             EEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHH---HHHHHHHHTT---TCCEEEEEECHHHHHHTTC
T ss_pred             EEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhH---HHHHHHHHhc---CCCEEEEEECcCCCCccch
Confidence            4899999987764      336666  589999999999986543   2344444432   5899999999998543333


Q ss_pred             CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      . .+...+.+.++++++++||++|.|++++|+.+...+.
T Consensus       129 ~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          129 K-IDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             C-BCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence            2 2356678888999999999999999999999988765

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.65  E-value=4.5e-16  Score=116.56  Aligned_cols=109  Identities=19%  Similarity=0.248  Sum_probs=82.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC--HHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETAK   78 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~   78 (144)
                      +||||||+++|...+..++..+|++++|+|+++..++.....++..+....  ..|+++++||+|+.+.....  .++..
T Consensus        78 ~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~  155 (403)
T 3sjy_A           78 SFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIK  155 (403)
T ss_dssp             EEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHH
Confidence            389999999999999999999999999999998765666666666555443  25899999999986533211  11222


Q ss_pred             HHHHHc---CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           79 AFADEI---GIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        79 ~~~~~~---~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      .+....   +++++++||++|.|++++++.|...+.
T Consensus       156 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          156 QFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence            222221   468999999999999999999987653

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.65  E-value=3e-17  Score=116.20  Aligned_cols=102  Identities=13%  Similarity=0.091  Sum_probs=76.7

Q ss_pred             CceeccchhHHhh----------hhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243            1 MQWDTAGQERFRT----------ITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~----------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~   68 (144)
                      +||||||+..+..          +++.|+  .++|++++|+|+++..+...+..   .+..   ...|+++++||+|+..
T Consensus        51 ~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~---~l~~---~~~pvilv~NK~Dl~~  124 (256)
T 3iby_A           51 EITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTS---QLFE---LGKPVVVALNMMDIAE  124 (256)
T ss_dssp             EEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHH---HHTT---SCSCEEEEEECHHHHH
T ss_pred             EEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHH---HHHH---cCCCEEEEEEChhcCC
Confidence            4899999976653          567777  89999999999998655443332   2222   2589999999999854


Q ss_pred             CcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           69 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      ..... .....+.+.++++++++||++|.|++++|+.|.+.
T Consensus       125 ~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          125 HRGIS-IDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             HTTCE-ECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             cCCcH-HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            33221 22345777789999999999999999999999876

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.64  E-value=6.2e-16  Score=106.48  Aligned_cols=108  Identities=15%  Similarity=0.156  Sum_probs=76.1

Q ss_pred             Cceeccc----------hhHHhhhhhhhhcC---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            1 MQWDTAG----------QERFRTITSSYYRG---AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         1 qi~Dt~G----------~~~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      +||||||          ++.|..++..|+..   +|++++|+|.++..+.. ...++..+..   ...|+++|+||+|+.
T Consensus        82 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~Dl~  157 (223)
T 4dhe_A           82 HLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLLTKCDKL  157 (223)
T ss_dssp             EEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEEECGGGS
T ss_pred             EEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEEeccccC
Confidence            4899999          67788888888876   78899999998743322 2234444433   258999999999986


Q ss_pred             CCcccC--HHHHHHHHHH-------cCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           68 ANKVVS--YETAKAFADE-------IGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        68 ~~~~~~--~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      +.....  ..........       .+.+++++||++|.|++++|++|.+.+..
T Consensus       158 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  211 (223)
T 4dhe_A          158 TRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP  211 (223)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred             ChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence            543321  1112222222       34689999999999999999999998853

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.62  E-value=8.7e-16  Score=116.07  Aligned_cols=110  Identities=15%  Similarity=0.141  Sum_probs=82.0

Q ss_pred             Cceeccch----------hHHhhhhh-hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQ----------ERFRTITS-SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~----------~~~~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   69 (144)
                      +||||||+          ++|..++. .+++++|++++|+|+++..++.+. .|+..+..   ...|+++++||+|+.+.
T Consensus       226 ~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~  301 (436)
T 2hjg_A          226 VIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDK  301 (436)
T ss_dssp             EETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCC
T ss_pred             EEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCc
Confidence            48999998          66665544 478899999999999987777764 45555543   25899999999999765


Q ss_pred             cccCHHHHHH-HHHH----cCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           70 KVVSYETAKA-FADE----IGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        70 ~~~~~~~~~~-~~~~----~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      .....++... +.+.    .+.+++++||++|.|++++|+.+...+....
T Consensus       302 ~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~  351 (436)
T 2hjg_A          302 DESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHS  351 (436)
T ss_dssp             CTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence            4443333322 2222    2469999999999999999999998887543

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.62  E-value=2.7e-16  Score=107.34  Aligned_cols=105  Identities=10%  Similarity=0.004  Sum_probs=68.1

Q ss_pred             eccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHH---HHhc--CCCCcEEEEEeCC-CCCCCcccCHHHH
Q 032243            4 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI---DRYA--SDNVNKLLVGNKC-DLTANKVVSYETA   77 (144)
Q Consensus         4 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~---~~~~--~~~~p~ilv~nK~-Dl~~~~~~~~~~~   77 (144)
                      |.+||.+++++|++||+++|++|||+|++|...++ ....+..+   ....  ....|++|++||. |+.  ...+..++
T Consensus       108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI  184 (227)
T 3l82_B          108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYL  184 (227)
T ss_dssp             ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHH
T ss_pred             ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHH
Confidence            45799999999999999999999999999876544 33333222   2221  1468999999995 663  23344444


Q ss_pred             HHHHH----HcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           78 KAFAD----EIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        78 ~~~~~----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      .....    ...|.+..|||.+|+|+.+.++||...+.
T Consensus       185 ~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          185 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             HHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            33221    13468899999999999999999987764

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.61  E-value=4.5e-15  Score=109.52  Aligned_cols=109  Identities=17%  Similarity=0.186  Sum_probs=83.6

Q ss_pred             CceeccchhHHh---------hhhhhhhcCCCEEEEEEeCCCHH--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQERFR---------TITSSYYRGAHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~~~~~---------~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   69 (144)
                      ++|||+|...+.         .....+...+|++++|+|+++..  ++.....|+..+..... ..|+++|+||.|+...
T Consensus       217 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~  295 (357)
T 2e87_A          217 QIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADE  295 (357)
T ss_dssp             EEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCH
T ss_pred             EEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCCh
Confidence            489999985421         12234456799999999998876  67777788888766543 5899999999998643


Q ss_pred             cccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           70 KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      ..  ..+...++...+++++++||++|.|+++++++|.+.+..
T Consensus       296 ~~--~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          296 EN--IKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRP  336 (357)
T ss_dssp             HH--HHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence            33  234555666778899999999999999999999998854

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.60  E-value=1.7e-16  Score=113.33  Aligned_cols=104  Identities=15%  Similarity=0.180  Sum_probs=76.1

Q ss_pred             CceeccchhHHh----------hhhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243            1 MQWDTAGQERFR----------TITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA   68 (144)
Q Consensus         1 qi~Dt~G~~~~~----------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~   68 (144)
                      .||||||+.++.          ..++.|+  .++|++++|+|+++..+...+   ...+...   ..|+++|+||+|+..
T Consensus        53 ~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~---~~~l~~~---~~p~ivv~NK~Dl~~  126 (274)
T 3i8s_A           53 TLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYL---TLQLLEL---GIPCIVALNMLDIAE  126 (274)
T ss_dssp             EEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHH---HHHHHHH---TCCEEEEEECHHHHH
T ss_pred             EEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHH---HHHHHhc---CCCEEEEEECccchh
Confidence            389999987765          2344444  799999999999886544433   3333333   589999999999853


Q ss_pred             CcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           69 NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      .... ......+.+.++++++++||++|.|++++++.|...+.
T Consensus       127 ~~~~-~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~~  168 (274)
T 3i8s_A          127 KQNI-RIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKA  168 (274)
T ss_dssp             HTTE-EECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred             hhhH-HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            3222 12245577788999999999999999999998877653

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.60  E-value=1.8e-15  Score=115.43  Aligned_cols=106  Identities=21%  Similarity=0.145  Sum_probs=68.4

Q ss_pred             CceeccchhHHhhhh--------hhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243            1 MQWDTAGQERFRTIT--------SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      +||||||+.++...+        ..++.++|++++|+|++++.++..+..+...+....  ..|+++|+||+|+.+....
T Consensus       284 ~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~  361 (476)
T 3gee_A          284 RLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA  361 (476)
T ss_dssp             EEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH
T ss_pred             EEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch
Confidence            489999998776543        346789999999999998877653322222222222  5899999999999655433


Q ss_pred             CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                         ....+......+++++||++|.|+++++++|.+.+.
T Consensus       362 ---~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          362 ---LIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             ---HHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             ---hHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence               222333332368999999999999999999999886

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.60  E-value=1.3e-15  Score=111.76  Aligned_cols=108  Identities=17%  Similarity=0.310  Sum_probs=84.9

Q ss_pred             CceeccchhH----Hhhhhhhhh---cCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCC
Q 032243            1 MQWDTAGQER----FRTITSSYY---RGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTA   68 (144)
Q Consensus         1 qi~Dt~G~~~----~~~~~~~~~---~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~   68 (144)
                      +||||||+.+    +..+...|+   +++|++|+|+|+++   +.++.++..|+..+..+..  ...|+++|+||+|+..
T Consensus       209 ~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~  288 (342)
T 1lnz_A          209 VMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE  288 (342)
T ss_dssp             EEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT
T ss_pred             EEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC
Confidence            4899999754    333445554   45999999999998   7889999889888887653  3689999999999854


Q ss_pred             CcccCHHHHHHHHHHcC--CcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           69 NKVVSYETAKAFADEIG--IPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        69 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      .    .+....+.+.+.  .+++++||+++.|+++++++|.+.+..
T Consensus       289 ~----~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~  330 (342)
T 1lnz_A          289 A----AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN  330 (342)
T ss_dssp             H----HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             C----HHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence            2    234455666665  689999999999999999999998853

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.59  E-value=4.9e-16  Score=116.87  Aligned_cols=104  Identities=15%  Similarity=0.149  Sum_probs=80.4

Q ss_pred             CceeccchhHHhhh-------hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC
Q 032243            1 MQWDTAGQERFRTI-------TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS   73 (144)
Q Consensus         1 qi~Dt~G~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~   73 (144)
                      +||||||+.+|..+       +..++.++|++++|+|+.....   ...|+..+...   +.|+++|+||+|+...... 
T Consensus        86 ~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~~---~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~-  158 (423)
T 3qq5_A           86 TLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTPY---EDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE-  158 (423)
T ss_dssp             EEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCHH---HHHHHHHHHHT---TCCEEEECCCCTTTTCCCT-
T ss_pred             EEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChHH---HHHHHHHHHhc---CCCEEEEEeCcCCCCccHH-
Confidence            48999999877654       4567899999999999943332   34566666554   5899999999999765443 


Q ss_pred             HHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           74 YETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                       +....+.+..+++++++||++|.|++++|+.|.+.+..
T Consensus       159 -~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~  196 (423)
T 3qq5_A          159 -ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPG  196 (423)
T ss_dssp             -HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred             -HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhh
Confidence             44455555667899999999999999999999998753

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.59  E-value=6.2e-15  Score=115.04  Aligned_cols=105  Identities=22%  Similarity=0.269  Sum_probs=83.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||||+.+|...+..++..+|++|+|+|+++..++.....|.....    .+.|+++++||+|+....  .......+
T Consensus        74 ~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei  147 (599)
T 3cb4_D           74 NFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEI  147 (599)
T ss_dssp             EEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHH
T ss_pred             EEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHH
Confidence            489999999999999999999999999999988665665555554432    258999999999996532  13334555


Q ss_pred             HHHcCC---cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           81 ADEIGI---PFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        81 ~~~~~~---~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ...+++   +++++||++|.|++++++.|.+.+.
T Consensus       148 ~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          148 EDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             HHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred             HHHhCCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence            556665   5999999999999999999988764

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.58  E-value=9.3e-15  Score=113.97  Aligned_cols=105  Identities=21%  Similarity=0.309  Sum_probs=83.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||||+.+|...+..++..+|++|+|+|+++..++.....|.....    .+.|+++++||+|+.....  .....++
T Consensus        76 nliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~~--~~v~~el  149 (600)
T 2ywe_A           76 HLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSADV--DRVKKQI  149 (600)
T ss_dssp             EEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCCH--HHHHHHH
T ss_pred             EEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccCH--HHHHHHH
Confidence            489999999999999999999999999999998766666655554432    2589999999999864321  2334445


Q ss_pred             HHHcCC---cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           81 ADEIGI---PFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        81 ~~~~~~---~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ....++   +++++||++|.|++++++.|.+.+.
T Consensus       150 ~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          150 EEVLGLDPEEAILASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             HHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHhhCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence            555565   5899999999999999999988764

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.58  E-value=7.9e-15  Score=109.97  Aligned_cols=105  Identities=22%  Similarity=0.285  Sum_probs=71.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCC----HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc--CH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SY   74 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~   74 (144)
                      +||||||+++|...+...+..+|++++|+|+++    +.+++.+.    .+....  ..|+++++||+|+.+....  ..
T Consensus        84 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l~--~~~iivv~NK~Dl~~~~~~~~~~  157 (408)
T 1s0u_A           84 SFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEILG--IDKIIIVQNKIDLVDEKQAEENY  157 (408)
T ss_dssp             EEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHTT--CCCEEEEEECTTSSCTTTTTTHH
T ss_pred             EEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHcC--CCeEEEEEEccCCCCHHHHHHHH
Confidence            489999999999888888888999999999985    34444332    222221  3589999999999654332  23


Q ss_pred             HHHHHHHHH---cCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           75 ETAKAFADE---IGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        75 ~~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +++..++..   .+++++++||++|.|++++++.|...+.
T Consensus       158 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          158 EQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             HHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            445555544   2568999999999999999999987653

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.58  E-value=1.6e-15  Score=107.90  Aligned_cols=106  Identities=25%  Similarity=0.227  Sum_probs=80.0

Q ss_pred             CceeccchhHHhh------hhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243            1 MQWDTAGQERFRT------ITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         1 qi~Dt~G~~~~~~------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      +||||||+..+..      .++.|+  .++|++++|+|+++..   ....|+..+....  ..|+++++||+|+......
T Consensus        53 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~  127 (271)
T 3k53_A           53 LVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKKKGA  127 (271)
T ss_dssp             EEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHHHTC
T ss_pred             EEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCccccc
Confidence            4899999987765      567777  7899999999998753   2233444443332  3899999999997533332


Q ss_pred             CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      .. ....+.+.++++++++||++|.|++++++.+...+..
T Consensus       128 ~~-~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~  166 (271)
T 3k53_A          128 KI-DIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEG  166 (271)
T ss_dssp             CC-CHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred             HH-HHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence            22 2566777889999999999999999999999998754

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.57  E-value=1.6e-14  Score=110.48  Aligned_cols=104  Identities=15%  Similarity=0.169  Sum_probs=79.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc--CHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYE   75 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~   75 (144)
                      +||||||+++|...+..++..+|++++|+|+++   +.+++.+.    .+...   ..|+++++||+|+.+....  ..+
T Consensus        76 ~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~~---~ip~IvviNK~Dl~~~~~~~~~~~  148 (482)
T 1wb1_A           76 TLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML----ILDHF---NIPIIVVITKSDNAGTEEIKRTEM  148 (482)
T ss_dssp             EECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHH----HHHHT---TCCBCEEEECTTSSCHHHHHHHHH
T ss_pred             EEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHH----HHHHc---CCCEEEEEECCCcccchhHHHHHH
Confidence            489999999999999999999999999999987   44444322    22222   4788999999999643211  123


Q ss_pred             HHHHHHHHc----CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           76 TAKAFADEI----GIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        76 ~~~~~~~~~----~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ++..++...    +.+++++||++|.|++++++.|...+.
T Consensus       149 ~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          149 IMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             HHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence            344455544    468999999999999999999999876

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.56  E-value=2.3e-15  Score=108.82  Aligned_cols=103  Identities=19%  Similarity=0.174  Sum_probs=74.5

Q ss_pred             CceeccchhH--------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHH-HHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 032243            1 MQWDTAGQER--------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWL-NEIDRYASDNVNKLLVGNKCDLTANKV   71 (144)
Q Consensus         1 qi~Dt~G~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~p~ilv~nK~Dl~~~~~   71 (144)
                      +||||||+.+        +......++.++|++++|+|+++..+..  ..|+ ..+.... ...|+++|+||+|+.....
T Consensus        58 ~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~  134 (301)
T 1wf3_A           58 VFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPE  134 (301)
T ss_dssp             EEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHH
T ss_pred             EEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchH
Confidence            4899999765        6667788899999999999998764433  2343 3444332 3589999999999864332


Q ss_pred             cCHHHHHHHHHHc-C-CcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           72 VSYETAKAFADEI-G-IPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        72 ~~~~~~~~~~~~~-~-~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                          .....++.+ + .+++++||++|.|++++++.|...+
T Consensus       135 ----~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          135 ----EAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM  171 (301)
T ss_dssp             ----HHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             ----HHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence                022233332 3 4789999999999999999988765

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.55  E-value=3.5e-15  Score=107.90  Aligned_cols=98  Identities=18%  Similarity=0.158  Sum_probs=79.7

Q ss_pred             chhHHhhhhhhhhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC-HHHHHHHHHHc
Q 032243            7 GQERFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS-YETAKAFADEI   84 (144)
Q Consensus         7 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-~~~~~~~~~~~   84 (144)
                      .+++++.+.+.++.++|++++|+|++++. ++..+..|+..+..   .++|+++|+||+|+.+...+. .++...+++..
T Consensus        65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~  141 (302)
T 2yv5_A           65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDA  141 (302)
T ss_dssp             ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT
T ss_pred             eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHC
Confidence            37888889999999999999999999886 88888899887655   258999999999996543222 33445566677


Q ss_pred             CCcEEEeecCCCCCHHHHHHHHH
Q 032243           85 GIPFMETSAKDSTNVEQAFMAMA  107 (144)
Q Consensus        85 ~~~~~~~Sa~~~~~i~~l~~~i~  107 (144)
                      +++++++||++|.|++++++.+.
T Consensus       142 g~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          142 GYDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             TCEEEECCTTTCTTHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHhhcc
Confidence            89999999999999999998653

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.54  E-value=2.7e-14  Score=109.05  Aligned_cols=103  Identities=21%  Similarity=0.169  Sum_probs=76.2

Q ss_pred             Cceeccchh-HHh--------hhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 032243            1 MQWDTAGQE-RFR--------TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV   71 (144)
Q Consensus         1 qi~Dt~G~~-~~~--------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~   71 (144)
                      +||||||+. ++.        .....+++++|++|+|+|++++.++.+.. ++..+     ...|+++|+||+|+...  
T Consensus       294 ~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--  365 (482)
T 1xzp_A          294 RIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--  365 (482)
T ss_dssp             EEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--
T ss_pred             EEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--
Confidence            489999987 543        22456789999999999998877766532 33322     25799999999999643  


Q ss_pred             cCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           72 VSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      +..++...+. ..+.+++++||++|.|+++++++|.+.+..
T Consensus       366 ~~~~~~~~~~-~~~~~~i~iSAktg~Gi~eL~~~l~~~~~~  405 (482)
T 1xzp_A          366 INEEEIKNKL-GTDRHMVKISALKGEGLEKLEESIYRETQE  405 (482)
T ss_dssp             CCHHHHHHHH-TCSTTEEEEEGGGTCCHHHHHHHHHHHTHH
T ss_pred             cCHHHHHHHh-cCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3344443332 234689999999999999999999998664

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.54  E-value=1.9e-14  Score=108.01  Aligned_cols=105  Identities=19%  Similarity=0.259  Sum_probs=75.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCC----HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc--CH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTD----QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SY   74 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~   74 (144)
                      .||||||+++|...+...+..+|++++|+|+++    +.+++.+.    .+....  ..|+++++||+|+.+....  ..
T Consensus        86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~~~--~~~iivviNK~Dl~~~~~~~~~~  159 (410)
T 1kk1_A           86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM----ALQIIG--QKNIIIAQNKIELVDKEKALENY  159 (410)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH----HHHHHT--CCCEEEEEECGGGSCHHHHHHHH
T ss_pred             EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH----HHHHcC--CCcEEEEEECccCCCHHHHHHHH
Confidence            389999999999888888889999999999985    33444332    222222  3579999999998653221  12


Q ss_pred             HHHHHHHHH---cCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           75 ETAKAFADE---IGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        75 ~~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +++..++..   .+++++++||++|.|++++++.|...+.
T Consensus       160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            233344433   2469999999999999999999887653

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.53  E-value=7.1e-14  Score=109.07  Aligned_cols=106  Identities=16%  Similarity=0.165  Sum_probs=77.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC----
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS----   73 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~----   73 (144)
                      +||||||+++|..++..++..+|++|+|+|+++   +.++..+..    +..   ...|+++++||+|+.......    
T Consensus        73 ~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~  145 (594)
T 1g7s_A           73 FFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRP  145 (594)
T ss_dssp             EEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCC
T ss_pred             EEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCc
Confidence            489999999999999999999999999999998   666654432    222   258999999999985421100    


Q ss_pred             ---------HH----------HHHHHHHHcC---------------CcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           74 ---------YE----------TAKAFADEIG---------------IPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        74 ---------~~----------~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                               ..          +........+               ++++++||++|.|+++++++|...+...
T Consensus       146 ~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~  219 (594)
T 1g7s_A          146 FMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY  219 (594)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence                     00          1111111111               3799999999999999999999887643

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.53  E-value=2.4e-14  Score=108.23  Aligned_cols=104  Identities=18%  Similarity=0.251  Sum_probs=74.0

Q ss_pred             CceeccchhH---------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 032243            1 MQWDTAGQER---------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV   71 (144)
Q Consensus         1 qi~Dt~G~~~---------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~   71 (144)
                      ++|||||++.         +...+..+++++|+++||+|+++..+..+  .++..+....  ..|+++|+||+|+...  
T Consensus        52 ~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~~--~~p~ilv~NK~D~~~~--  125 (439)
T 1mky_A           52 KLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED--ESLADFLRKS--TVDTILVANKAENLRE--  125 (439)
T ss_dssp             EEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHHH--TCCEEEEEESCCSHHH--
T ss_pred             EEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEeCCCCccc--
Confidence            4899999753         45667888999999999999987543332  2222222222  4899999999997421  


Q ss_pred             cCHHHH-HHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           72 VSYETA-KAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        72 ~~~~~~-~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      . .... ..+. ..++ +++++||++|.|+.++++.+...+..
T Consensus       126 ~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          126 F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEE  166 (439)
T ss_dssp             H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhccc
Confidence            1 1122 2333 4566 78999999999999999999998864

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.52  E-value=1.2e-14  Score=103.56  Aligned_cols=105  Identities=8%  Similarity=-0.026  Sum_probs=72.8

Q ss_pred             eccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHH---HHH-Hh-cCCCCcEEEEEeC-CCCCCCcccCHHHH
Q 032243            4 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLN---EID-RY-ASDNVNKLLVGNK-CDLTANKVVSYETA   77 (144)
Q Consensus         4 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~---~~~-~~-~~~~~p~ilv~nK-~Dl~~~~~~~~~~~   77 (144)
                      |.|||.+++++|++||+++|++|||+|++|.+.++ ....+.   .+. .. ...+.|++|++|| .|+..  ..+..++
T Consensus       193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI  269 (312)
T 3l2o_B          193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYL  269 (312)
T ss_dssp             ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHH
T ss_pred             CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHH
Confidence            46799999999999999999999999999987544 222222   222 11 1246899999996 68743  3334443


Q ss_pred             HHHHH----HcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           78 KAFAD----EIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        78 ~~~~~----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      .....    ...|.+..+||.+|+|+.+.++||...+.
T Consensus       270 ~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          270 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred             HHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence            32221    12467899999999999999999998874

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.52  E-value=2e-14  Score=106.52  Aligned_cols=107  Identities=6%  Similarity=-0.031  Sum_probs=78.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcE-EEEEe-CCCCCCCcccCH--HH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK-LLVGN-KCDLTANKVVSY--ET   76 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~n-K~Dl~~~~~~~~--~~   76 (144)
                      +||||||+++|...+...+..+|++|+|+| + ...+....+++..+...   ..|. ++++| |+|+ +...+..  ++
T Consensus        63 ~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~  136 (370)
T 2elf_A           63 VFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QGLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAK  136 (370)
T ss_dssp             EEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TCCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHH
T ss_pred             EEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CCCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHH
Confidence            489999999998888888999999999999 4 33444455555555443   3677 88999 9998 4322211  33


Q ss_pred             HHHHHHHcC---CcEEE--eecCC---CCCHHHHHHHHHHHHHHh
Q 032243           77 AKAFADEIG---IPFME--TSAKD---STNVEQAFMAMAASIKDR  113 (144)
Q Consensus        77 ~~~~~~~~~---~~~~~--~Sa~~---~~~i~~l~~~i~~~~~~~  113 (144)
                      +..++...+   +++++  +||++   +.|++++++.|.+.+...
T Consensus       137 i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~  181 (370)
T 2elf_A          137 LKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKI  181 (370)
T ss_dssp             HHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcccc
Confidence            344443333   68999  99999   999999999999887643

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.51  E-value=3.2e-14  Score=107.59  Aligned_cols=101  Identities=19%  Similarity=0.186  Sum_probs=69.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcc--
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---FN---NVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKV--   71 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~--   71 (144)
                      .||||||+++|...+..++..+|++|||+|+++...   |.   .....+.....   ...| +++++||+|+.....  
T Consensus        98 ~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl~~~~~~~  174 (439)
T 3j2k_7           98 TILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDPTVNWSN  174 (439)
T ss_pred             EEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCCcccchHH
Confidence            489999999999999999999999999999987421   11   11222222222   2356 899999999853210  


Q ss_pred             ----cCHHHHHHHHHHcC------CcEEEeecCCCCCHHHHHH
Q 032243           72 ----VSYETAKAFADEIG------IPFMETSAKDSTNVEQAFM  104 (144)
Q Consensus        72 ----~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~~  104 (144)
                          ...++...+++..+      ++++++||++|.|+.++++
T Consensus       175 ~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          175 ERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence                11223344444444      4799999999999999766

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.51  E-value=7.4e-14  Score=107.72  Aligned_cols=64  Identities=17%  Similarity=0.138  Sum_probs=51.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~   68 (144)
                      +||||||+.+|...+..++..+|++|+|+|+++......... +..+...   ++|+++++||+|+..
T Consensus        85 ~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~-~~~~~~~---~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           85 NLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKL-MEVCRLR---HTPIMTFINKMDRDT  148 (528)
T ss_dssp             EEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHH-HHHHHTT---TCCEEEEEECTTSCC
T ss_pred             EEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHHHHHc---CCCEEEEEeCCCCcc
Confidence            489999999999999999999999999999998655554433 3333322   589999999999854

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.51  E-value=5.2e-14  Score=107.62  Aligned_cols=99  Identities=17%  Similarity=0.132  Sum_probs=65.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHH------HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNN------VKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY   74 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~   74 (144)
                      +||||||+++|...+..++..+|++|+|+|+++..++..      ....+......  ...|+++++||+|+.+......
T Consensus       114 ~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~~~~  191 (483)
T 3p26_A          114 TIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQQRF  191 (483)
T ss_dssp             EEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCHHHH
T ss_pred             EEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchHHHH
Confidence            489999999999999999999999999999988643322      11212222221  2356999999999865322222


Q ss_pred             H----HHHHHHHHcC-----CcEEEeecCCCCCHHH
Q 032243           75 E----TAKAFADEIG-----IPFMETSAKDSTNVEQ  101 (144)
Q Consensus        75 ~----~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  101 (144)
                      +    ++..+....+     ++++++||++|.|+.+
T Consensus       192 ~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          192 EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            2    2233333333     5789999999999985

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.49  E-value=2.5e-14  Score=108.01  Aligned_cols=101  Identities=19%  Similarity=0.127  Sum_probs=72.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc--c--CHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV--V--SYET   76 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~--~~~~   76 (144)
                      +||||||+++|...+..++..+|++|+|+|+++.... ....++..+....  ..|+++++||+|+.+...  .  ...+
T Consensus       107 ~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~~--~~~iIvviNK~Dl~~~~~~~~~~i~~~  183 (434)
T 1zun_B          107 IIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLLG--IKHIVVAINKMDLNGFDERVFESIKAD  183 (434)
T ss_dssp             EEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHTT--CCEEEEEEECTTTTTSCHHHHHHHHHH
T ss_pred             EEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHcC--CCeEEEEEEcCcCCcccHHHHHHHHHH
Confidence            4899999999999999999999999999999875322 2233443333222  236899999999965211  1  1234


Q ss_pred             HHHHHHHcC-----CcEEEeecCCCCCHHHHHH
Q 032243           77 AKAFADEIG-----IPFMETSAKDSTNVEQAFM  104 (144)
Q Consensus        77 ~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~  104 (144)
                      ...+++..+     ++++++||++|.|+.++++
T Consensus       184 ~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~  216 (434)
T 1zun_B          184 YLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE  216 (434)
T ss_dssp             HHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred             HHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence            455566666     5899999999999998544

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.49  E-value=3.2e-14  Score=107.49  Aligned_cols=103  Identities=16%  Similarity=0.136  Sum_probs=73.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh----c-CCCCcEEEEEeCCCCCCCc--c--
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY----A-SDNVNKLLVGNKCDLTANK--V--   71 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~-~~~~p~ilv~nK~Dl~~~~--~--   71 (144)
                      +||||||+++|...+..++..+|++|+|+|+++ .+|+.+..|.......    . ....++++++||+|+.+..  +  
T Consensus        87 ~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~  165 (435)
T 1jny_A           87 TIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKR  165 (435)
T ss_dssp             EECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHH
T ss_pred             EEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHH
Confidence            489999999999999999999999999999998 6777543322211111    1 1124689999999986521  1  


Q ss_pred             --cCHHHHHHHHHHcC-----CcEEEeecCCCCCHHHHHH
Q 032243           72 --VSYETAKAFADEIG-----IPFMETSAKDSTNVEQAFM  104 (144)
Q Consensus        72 --~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~  104 (144)
                        ...+++..++...+     ++++++||++|.|+.++++
T Consensus       166 ~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          166 YKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             HHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             HHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence              11344555666655     5799999999999986654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.49  E-value=2e-14  Score=108.67  Aligned_cols=102  Identities=19%  Similarity=0.148  Sum_probs=69.6

Q ss_pred             Cceeccchh--------HHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243            1 MQWDTAGQE--------RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         1 qi~Dt~G~~--------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      ++|||||++        ++...+..+++.+|+++||+|+.+..++.+  .++..+...  ...|+++++||+|+..... 
T Consensus        54 ~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D~~~~~~-  128 (436)
T 2hjg_A           54 NLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRA-  128 (436)
T ss_dssp             EEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCCC------
T ss_pred             EEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCccchh-
Confidence            489999985        678888899999999999999987655443  333333222  3689999999999854321 


Q ss_pred             CHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           73 SYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        73 ~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                         ....+. ..++ +++++||++|.|+.++++++...+.
T Consensus       129 ---~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~  164 (436)
T 2hjg_A          129 ---NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFK  164 (436)
T ss_dssp             ---CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred             ---hHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence               111122 3455 7899999999999999999988774

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.48  E-value=5e-15  Score=114.16  Aligned_cols=107  Identities=19%  Similarity=0.191  Sum_probs=76.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC-HHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS-YETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-~~~~~~   79 (144)
                      +||||||++.|..++..++..+|++++|+|+++....... ..+..+.   ....|+++++||+|+....... ..+...
T Consensus        55 ~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~-e~l~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~  130 (537)
T 3izy_P           55 TFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTV-ESIQHAK---DAHVPIVLAINKCDKAEADPEKVKKELLA  130 (537)
T ss_dssp             BCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHH-HHHHHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHH
T ss_pred             EEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHH-HHHHHHH---HcCCcEEEEEecccccccchHHHHHHHHh
Confidence            4899999999999999999999999999999885444332 2222232   2358999999999986432111 111111


Q ss_pred             H---HHHc--CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           80 F---ADEI--GIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        80 ~---~~~~--~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +   ...+  .++++++||++|.|++++++.|...+.
T Consensus       131 ~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~  167 (537)
T 3izy_P          131 YDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAE  167 (537)
T ss_dssp             TTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred             hhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence            1   1111  247899999999999999999988764

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.48  E-value=3.8e-14  Score=106.13  Aligned_cols=94  Identities=14%  Similarity=0.156  Sum_probs=69.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCccc---CHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV---SYET   76 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~---~~~~   76 (144)
                      +||||||+++|...+..++..+|++|+|+|+++.... ....++..+...   ..| +++++||+|+......   ...+
T Consensus        78 ~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~  153 (405)
T 2c78_A           78 SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEME  153 (405)
T ss_dssp             EEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHH
T ss_pred             EEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHH
Confidence            4899999999999999999999999999999875432 334555544433   467 8899999998642211   1224


Q ss_pred             HHHHHHHcC-----CcEEEeecCCCCC
Q 032243           77 AKAFADEIG-----IPFMETSAKDSTN   98 (144)
Q Consensus        77 ~~~~~~~~~-----~~~~~~Sa~~~~~   98 (144)
                      ...+++..+     ++++++||++|.|
T Consensus       154 ~~~~l~~~~~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          154 VRDLLNQYEFPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             HHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred             HHHHHHHhcccccCCCEEEccHHHhhh
Confidence            455565555     5899999999987

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.46  E-value=1.2e-13  Score=103.20  Aligned_cols=106  Identities=18%  Similarity=0.177  Sum_probs=75.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCccc---CHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV---SYET   76 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~---~~~~   76 (144)
                      +||||||+++|...+..++..+|++|+|+|+++...... ...+..+...   ..| +++++||+|+......   ...+
T Consensus        69 ~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~~---~vp~iivviNK~Dl~~~~~~~~~~~~~  144 (397)
T 1d2e_A           69 AHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELE  144 (397)
T ss_dssp             EEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHH
T ss_pred             EEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHHc---CCCeEEEEEECcccCCCHHHHHHHHHH
Confidence            489999999999999999999999999999987432222 2333333322   477 6899999998642211   1234


Q ss_pred             HHHHHHHcC-----CcEEEeecCCCCC----------HHHHHHHHHHHH
Q 032243           77 AKAFADEIG-----IPFMETSAKDSTN----------VEQAFMAMAASI  110 (144)
Q Consensus        77 ~~~~~~~~~-----~~~~~~Sa~~~~~----------i~~l~~~i~~~~  110 (144)
                      ...+++..+     ++++++||++|.|          +.++++.|...+
T Consensus       145 ~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          145 IRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             HHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence            555666655     5899999999764          778887776654

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.46  E-value=7e-14  Score=106.29  Aligned_cols=102  Identities=15%  Similarity=0.163  Sum_probs=65.8

Q ss_pred             CceeccchhHHhhhhh--------hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243            1 MQWDTAGQERFRTITS--------SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~--------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      +||||||+.++...++        .++..+|++++|+|.+++.+... ..|+..+.     ..|+++|+||+|+......
T Consensus       275 ~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~  348 (462)
T 3geh_A          275 QVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLI  348 (462)
T ss_dssp             EECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGS
T ss_pred             EEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhh
Confidence            4899999876654333        35788999999999988655543 34444442     3699999999999654433


Q ss_pred             CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      .  ....+.  .+.+++++||++|.|++++++.|.+.+..
T Consensus       349 ~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~~  384 (462)
T 3geh_A          349 T--SLEYPE--NITQIVHTAAAQKQGIDSLETAILEIVQT  384 (462)
T ss_dssp             T--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred             H--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            2  110011  34689999999999999999999998754

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.45  E-value=1e-14  Score=111.11  Aligned_cols=103  Identities=18%  Similarity=0.172  Sum_probs=60.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCH---HHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCc---c--
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ---ESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANK---V--   71 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~---~--   71 (144)
                      +||||||+++|...+..++..+|++|+|+|+++.   .+|+...++...+.......+| +++++||+|+....   .  
T Consensus       124 ~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~  203 (467)
T 1r5b_A          124 SLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERY  203 (467)
T ss_dssp             EECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHH
T ss_pred             EEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHH
Confidence            4899999999999999999999999999999875   2333222222222222222466 89999999985321   0  


Q ss_pred             -cCHHHHHHHHHHc-C------CcEEEeecCCCCCHHHHH
Q 032243           72 -VSYETAKAFADEI-G------IPFMETSAKDSTNVEQAF  103 (144)
Q Consensus        72 -~~~~~~~~~~~~~-~------~~~~~~Sa~~~~~i~~l~  103 (144)
                       ....+...++... +      ++++++||++|.|+.+++
T Consensus       204 ~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          204 KECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             HHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence             1122455555555 3      569999999999998766

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.44  E-value=2e-12  Score=95.71  Aligned_cols=112  Identities=19%  Similarity=0.154  Sum_probs=77.8

Q ss_pred             Cceeccch---------hHHhhhhhhhhcCCCEEEEEEeCCCHH--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQ---------ERFRTITSSYYRGAHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~---------~~~~~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   69 (144)
                      ++|||+|.         +.|...+. .+..+|++++|+|++++.  ....+..|...+........|+++|+||+|+.+.
T Consensus       229 ~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~  307 (364)
T 2qtf_A          229 MLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKING  307 (364)
T ss_dssp             EEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCS
T ss_pred             EEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCc
Confidence            37999996         33555444 478899999999998876  5555555555554443346899999999998653


Q ss_pred             cccC-HHHHHHHHHHc---CCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           70 KVVS-YETAKAFADEI---GIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        70 ~~~~-~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      .... ...+..++...   +.+++++||+++.|++++++.|...+...
T Consensus       308 ~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          308 DLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             CHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence            2100 01222233444   24789999999999999999999887653

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.44  E-value=1.1e-13  Score=99.98  Aligned_cols=106  Identities=18%  Similarity=0.170  Sum_probs=73.1

Q ss_pred             Cceeccchh-H--------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 032243            1 MQWDTAGQE-R--------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV   71 (144)
Q Consensus         1 qi~Dt~G~~-~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~   71 (144)
                      .||||||+. +        +......++..+|++++|+|.++   +.....++.....  ....|+++++||+|+.....
T Consensus        59 ~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~  133 (301)
T 1ega_A           59 IYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKA  133 (301)
T ss_dssp             EEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHH
T ss_pred             EEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHH
Confidence            379999987 2        34445667889999999999876   2222333333222  22589999999999864222


Q ss_pred             cCHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           72 VSYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        72 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ...+.+..+.+..++ .++++||+++.|++++++.+...+.
T Consensus       134 ~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~  174 (301)
T 1ega_A          134 DLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP  174 (301)
T ss_dssp             HHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCC
Confidence            112334444445565 6899999999999999999887653

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.44  E-value=2.6e-13  Score=91.24  Aligned_cols=71  Identities=23%  Similarity=0.393  Sum_probs=59.3

Q ss_pred             CceeccchhHHhhhhhhhhcC----CCEEEEEEeCC-CHHHHHHHHHHHHHHHHh----cCCCCcEEEEEeCCCCCCCcc
Q 032243            1 MQWDTAGQERFRTITSSYYRG----AHGIIIVYDVT-DQESFNNVKQWLNEIDRY----ASDNVNKLLVGNKCDLTANKV   71 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~----~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ilv~nK~Dl~~~~~   71 (144)
                      +||||||++++...+..++.+    +|++++|||++ +..++..+..|+..+...    .....|+++|+||+|+.+...
T Consensus        94 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  173 (193)
T 2ged_A           94 TLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  173 (193)
T ss_dssp             SEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             EEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence            589999999998888888776    89999999999 889999888888777554    224699999999999976544

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.40  E-value=2.3e-12  Score=97.44  Aligned_cols=110  Identities=23%  Similarity=0.275  Sum_probs=72.5

Q ss_pred             CceeccchhHHhhhh------------hhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243            1 MQWDTAGQERFRTIT------------SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~   68 (144)
                      ++|||+|+.++....            ..++..+|++++|+|+++..+..+. .+...+..   ...|+++++||.|+..
T Consensus       231 ~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~  306 (439)
T 1mky_A          231 VFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVV  306 (439)
T ss_dssp             EESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGST
T ss_pred             EEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCC
Confidence            379999986543221            3467789999999999875554432 22222222   2589999999999876


Q ss_pred             CcccCHHHHHH-HHHHc----CCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           69 NKVVSYETAKA-FADEI----GIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        69 ~~~~~~~~~~~-~~~~~----~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      .......+... +...+    +.+++++||++|.|++++|+.+...+....
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~  357 (439)
T 1mky_A          307 HREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYT  357 (439)
T ss_dssp             TGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             chhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence            54433333322 22222    468999999999999999999998876543

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.39  E-value=1.2e-13  Score=108.19  Aligned_cols=102  Identities=18%  Similarity=0.102  Sum_probs=67.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHH---HHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccC---
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVS---   73 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~---   73 (144)
                      +||||||+++|...+..++..+|++|+|+|+++..   +|.....+...+..... ...|+++++||+|+.+.....   
T Consensus       248 ~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~e  327 (611)
T 3izq_1          248 TIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEE  327 (611)
T ss_dssp             EEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHHHH
T ss_pred             EEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHHHH
Confidence            48999999999999999999999999999998632   11001111122211111 124599999999996532211   


Q ss_pred             -HHHHHHHHHHcC-----CcEEEeecCCCCCHHHH
Q 032243           74 -YETAKAFADEIG-----IPFMETSAKDSTNVEQA  102 (144)
Q Consensus        74 -~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l  102 (144)
                       ..++..+....+     ++++++||++|.|+.++
T Consensus       328 i~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          328 IKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence             223333444444     58999999999999876

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.39  E-value=7.5e-13  Score=108.93  Aligned_cols=106  Identities=15%  Similarity=0.177  Sum_probs=75.8

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCccc---CHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV---SYET   76 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~---~~~~   76 (144)
                      +||||||+++|...+..++..+|++|+|+|+++..... ...++..+...   .+| +++++||+|+.+....   ...+
T Consensus       362 ~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eE  437 (1289)
T 3avx_A          362 AHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEME  437 (1289)
T ss_dssp             EEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHH
T ss_pred             EEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHH
Confidence            48999999999999999999999999999998753222 33444444333   477 7899999999643221   1234


Q ss_pred             HHHHHHHcC-----CcEEEeecCCC--------CCHHHHHHHHHHHH
Q 032243           77 AKAFADEIG-----IPFMETSAKDS--------TNVEQAFMAMAASI  110 (144)
Q Consensus        77 ~~~~~~~~~-----~~~~~~Sa~~~--------~~i~~l~~~i~~~~  110 (144)
                      +..++...+     ++++++||++|        .|+.++++.|...+
T Consensus       438 i~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          438 VRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             HHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence            555666655     58999999999        45777777766544

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.36  E-value=4.2e-13  Score=101.99  Aligned_cols=99  Identities=17%  Similarity=0.169  Sum_probs=69.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHH---HHH---HHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcc--
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SFN---NVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKV--   71 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~--   71 (144)
                      +||||||+++|...+..++..+|++|+|+|+++..   +|+   .....+......   ..| +++++||+|+.+...  
T Consensus        88 ~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~---~v~~iivviNK~Dl~~~~~~~  164 (458)
T 1f60_A           88 TVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVKWDESR  164 (458)
T ss_dssp             EEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGTTCHHH
T ss_pred             EEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc---CCCeEEEEEEccccccCCHHH
Confidence            48999999999999999999999999999998652   221   222222222222   355 899999999863111  


Q ss_pred             --cCHHHHHHHHHHcC-----CcEEEeecCCCCCHHHH
Q 032243           72 --VSYETAKAFADEIG-----IPFMETSAKDSTNVEQA  102 (144)
Q Consensus        72 --~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l  102 (144)
                        ....++..++...+     ++++++||++|.|+.++
T Consensus       165 ~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          165 FQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             HHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence              11233445555555     68999999999999754

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.36  E-value=7.2e-14  Score=106.96  Aligned_cols=101  Identities=20%  Similarity=0.289  Sum_probs=71.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCc--ccCHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTD---QESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANK--VVSYE   75 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~~~~~   75 (144)
                      .||||||++.|..++..++..+|++++|+|+++   +.+.+.    +.....   ...|+++++||+|+....  .+...
T Consensus        54 ~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~----l~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~  126 (501)
T 1zo1_I           54 TFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEA----IQHAKA---AQVPVVVAVNKIDKPEADPDRVKNE  126 (501)
T ss_dssp             CEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHH----HHHHHH---TTCCEEEEEECSSSSTTCCCCTTCC
T ss_pred             EEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHH----HHHHHh---cCceEEEEEEeccccccCHHHHHHH
Confidence            589999999999999999999999999999987   333332    222222   258999999999985421  11000


Q ss_pred             --HHHHHHHHcC--CcEEEeecCCCCCHHHHHHHHHH
Q 032243           76 --TAKAFADEIG--IPFMETSAKDSTNVEQAFMAMAA  108 (144)
Q Consensus        76 --~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~  108 (144)
                        +...+.+.++  ++++++||++|.|++++|+.|..
T Consensus       127 l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          127 LSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             CCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred             HHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence              0000111222  58999999999999999998864

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.36  E-value=4.8e-13  Score=101.56  Aligned_cols=102  Identities=19%  Similarity=0.136  Sum_probs=70.1

Q ss_pred             Cceeccc--------hhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243            1 MQWDTAG--------QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         1 qi~Dt~G--------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      ++|||||        ++++...+..++..+|++|||+|..+..+.  ...++..+...  ...|+++|+||+|+....  
T Consensus        74 ~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~--~d~~l~~~l~~--~~~pvilV~NK~D~~~~~--  147 (456)
T 4dcu_A           74 NLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTA--ADEEVAKILYR--TKKPVVLAVNKLDNTEMR--  147 (456)
T ss_dssp             EEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCH--HHHHHHHHHTT--CCSCEEEEEECC--------
T ss_pred             EEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCCh--HHHHHHHHHHH--cCCCEEEEEECccchhhh--
Confidence            4899999        888999999999999999999998763222  22333333332  368999999999985321  


Q ss_pred             CHHHHHHHHHHcCC-cEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           73 SYETAKAFADEIGI-PFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        73 ~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                        .....+. ..++ ..+++||++|.|+.++++.+...+.
T Consensus       148 --~~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~  184 (456)
T 4dcu_A          148 --ANIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFK  184 (456)
T ss_dssp             -----CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTGG
T ss_pred             --hhHHHHH-HcCCCceEEeecccccchHHHHHHHHhhcc
Confidence              1111111 2333 6789999999999999999987654

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.35  E-value=9.1e-12  Score=86.80  Aligned_cols=110  Identities=14%  Similarity=0.164  Sum_probs=72.6

Q ss_pred             Cceeccc-----------hhHHhhhhhhhhcCCCEEEEEEeCCCHHH--HHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            1 MQWDTAG-----------QERFRTITSSYYRGAHGIIIVYDVTDQES--FNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         1 qi~Dt~G-----------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      +||||||           +.++...+..++.++|++|+|+|+++...  ...+..+...+....  ..|+++|+||.|+.
T Consensus        81 ~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~--~~~~iiv~nK~D~~  158 (239)
T 3lxx_A           81 VVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERA--RSFMILIFTRKDDL  158 (239)
T ss_dssp             EEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHH--GGGEEEEEECGGGC
T ss_pred             EEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhc--cceEEEEEeCCccC
Confidence            4899999           45666667777788999999999875432  222222222221111  35899999999986


Q ss_pred             CCcccC------HHHHHHHHHHcCCcEEEeecCCC-----CCHHHHHHHHHHHHHH
Q 032243           68 ANKVVS------YETAKAFADEIGIPFMETSAKDS-----TNVEQAFMAMAASIKD  112 (144)
Q Consensus        68 ~~~~~~------~~~~~~~~~~~~~~~~~~Sa~~~-----~~i~~l~~~i~~~~~~  112 (144)
                      ....+.      .+.+..+++..+..++.+++..+     .++.++|+.+...+..
T Consensus       159 ~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          159 GDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             ------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            554432      13566777788888888877644     6889999988887754

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.34  E-value=1.1e-12  Score=92.53  Aligned_cols=111  Identities=14%  Similarity=0.130  Sum_probs=69.6

Q ss_pred             CceeccchhHH-----------hhhhhhhhcCCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhcCCCCcEEEEEe-CCCCC
Q 032243            1 MQWDTAGQERF-----------RTITSSYYRGAHGIIIVYDVTDQESF-NNVKQWLNEIDRYASDNVNKLLVGN-KCDLT   67 (144)
Q Consensus         1 qi~Dt~G~~~~-----------~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ilv~n-K~Dl~   67 (144)
                      +||||||+..+           ......++.++|++++|+|+++.... ..+..++..+.... ...|.++++| |.|+.
T Consensus        74 ~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~  152 (260)
T 2xtp_A           74 VIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLN  152 (260)
T ss_dssp             EEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGT
T ss_pred             EEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccC
Confidence            48999998654           22334467899999999999862221 22223333321111 0246666666 99986


Q ss_pred             CCcccCH-------HHHHHHHHHcCCc---E--EEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           68 ANKVVSY-------ETAKAFADEIGIP---F--METSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        68 ~~~~~~~-------~~~~~~~~~~~~~---~--~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      .. .+..       ..+..+....+..   +  +++||+++.|++++|+.|.+.+...
T Consensus       153 ~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          153 GG-SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             TC-CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             Cc-cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence            43 2211       2233455555432   2  7899999999999999999998753

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.34  E-value=2.3e-13  Score=97.59  Aligned_cols=108  Identities=19%  Similarity=0.179  Sum_probs=72.4

Q ss_pred             Cceeccchh-------------HHhhhhhhhhcCCCEEE-EEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243            1 MQWDTAGQE-------------RFRTITSSYYRGAHGII-IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL   66 (144)
Q Consensus         1 qi~Dt~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl   66 (144)
                      +||||||..             .+..++..|+.+++.++ +|+|+++..+..+...++..+.   ....|+++|+||+|+
T Consensus       128 ~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~---~~~~~~i~V~NK~Dl  204 (299)
T 2aka_B          128 TLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITKLDL  204 (299)
T ss_dssp             EEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC---TTCSSEEEEEECGGG
T ss_pred             eEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC---CCCCeEEEEEEcccc
Confidence            489999963             57778889999998777 7899887543333333333332   235899999999999


Q ss_pred             CCCcccCHHHHHHHHHHc--C-CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           67 TANKVVSYETAKAFADEI--G-IPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~--~-~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      .+......+.........  + .+++++||++|.|++++++.+.....
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~  252 (299)
T 2aka_B          205 MDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK  252 (299)
T ss_dssp             SCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred             CCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence            654332222221100011  2 26789999999999999999887543

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.30  E-value=8.4e-12  Score=98.71  Aligned_cols=63  Identities=13%  Similarity=0.159  Sum_probs=49.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      +||||||+.+|...+..++..+|++++|+|+++..... ...++..+...   ..|+++++||+|+.
T Consensus        77 nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~~---~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           77 FLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAERL---GLPRMVVVTKLDKG  139 (665)
T ss_dssp             EEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred             EEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHHc---cCCEEEEecCCchh
Confidence            58999999999999999999999999999987643322 23444444332   58999999999985

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.29  E-value=2e-13  Score=100.94  Aligned_cols=107  Identities=20%  Similarity=0.232  Sum_probs=56.6

Q ss_pred             Cceeccch-------hHHhhhhh-------hhhcCC-------------CEEEEEEeCCCHHHHHHHH-HHHHHHHHhcC
Q 032243            1 MQWDTAGQ-------ERFRTITS-------SYYRGA-------------HGIIIVYDVTDQESFNNVK-QWLNEIDRYAS   52 (144)
Q Consensus         1 qi~Dt~G~-------~~~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~   52 (144)
                      ++|||+|+       ++|..++.       .|+..+             |+++++++.+ ..++..+. .++..+    .
T Consensus        98 ~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~  172 (361)
T 2qag_A           98 TVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----H  172 (361)
T ss_dssp             EEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----C
T ss_pred             EEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----c
Confidence            48999999       77777776       666543             3455555532 23344443 233322    2


Q ss_pred             CCCcEEEEEeCCCCCCCcccCH--HHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           53 DNVNKLLVGNKCDLTANKVVSY--ETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        53 ~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      ...|+++|+||+|+.....+..  ..+..++...+++++++||+++.+ ++.|..+...+...
T Consensus       173 ~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~  234 (361)
T 2qag_A          173 NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS  234 (361)
T ss_dssp             S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence            4689999999999976544422  345555666688999999999999 88888888888653

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.27  E-value=3.3e-11  Score=89.29  Aligned_cols=97  Identities=24%  Similarity=0.352  Sum_probs=72.3

Q ss_pred             chhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHH----HHHH
Q 032243            7 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAK----AFAD   82 (144)
Q Consensus         7 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~----~~~~   82 (144)
                      ..++|.++++.+++.+|++++|+|++++.     ..|...+..... +.|+++|+||+|+.+.. ...+...    .+++
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence            35789999999999999999999999853     334444444432 58999999999996543 2233333    3355


Q ss_pred             HcCC---cEEEeecCCCCCHHHHHHHHHHHH
Q 032243           83 EIGI---PFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        83 ~~~~---~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      ..++   +++.+||++|.|++++++.+....
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            6676   799999999999999999986643

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.26  E-value=9.9e-13  Score=97.03  Aligned_cols=106  Identities=14%  Similarity=0.174  Sum_probs=73.1

Q ss_pred             CceeccchhHH-------------hhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            1 MQWDTAGQERF-------------RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         1 qi~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      +||||||..++             ..+...|+.++|++|+|+|..+.+...  ..|+..+........|+++|+||.|+.
T Consensus       139 ~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~Dl~  216 (360)
T 3t34_A          139 TLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKIDLM  216 (360)
T ss_dssp             EEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECGGGC
T ss_pred             EEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCCccC
Confidence            37999998765             667889999999999999875433221  233344444444467999999999997


Q ss_pred             CCcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHH
Q 032243           68 ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA  108 (144)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~  108 (144)
                      +......+.........+.+|+++++.++.++++.+.....
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~  257 (360)
T 3t34_A          217 DKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAA  257 (360)
T ss_dssp             CTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHH
T ss_pred             CCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHH
Confidence            65444343333333445678999999998888776554433

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.24  E-value=2.9e-11  Score=96.02  Aligned_cols=64  Identities=25%  Similarity=0.389  Sum_probs=51.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~   68 (144)
                      +||||||+.+|...+..++..+|++|+|+|+++..++.....|. .+...   +.|+++++||+|+..
T Consensus        80 ~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~~---~~p~ivviNKiD~~~  143 (691)
T 1dar_A           80 NIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEKY---KVPRIAFANKMDKTG  143 (691)
T ss_dssp             EEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHHT---TCCEEEEEECTTSTT
T ss_pred             EEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHHc---CCCEEEEEECCCccc
Confidence            48999999999999999999999999999999876666544443 23332   589999999999854

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.23  E-value=1.8e-11  Score=97.18  Aligned_cols=108  Identities=14%  Similarity=0.209  Sum_probs=75.1

Q ss_pred             ceeccchhHH---hhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH---
Q 032243            2 QWDTAGQERF---RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE---   75 (144)
Q Consensus         2 i~Dt~G~~~~---~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~---   75 (144)
                      ||||||....   ...+..++.++|++|||+|+++..+..+...|...+..   ...|+++|+||+|+.....++.+   
T Consensus       178 LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e  254 (695)
T 2j69_A          178 IVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG---RGLTVFFLVNAWDQVRESLIDPDDVE  254 (695)
T ss_dssp             EEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT---SCCCEEEEEECGGGGGGGCSSTTCHH
T ss_pred             EEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh---hCCCEEEEEECcccccccccChhhHH
Confidence            7999998663   45667889999999999999887776665555433322   24789999999998543211110   


Q ss_pred             -------HHHH-----HHHHc--------CCcEEEeecC--------------CCCCHHHHHHHHHHHHHH
Q 032243           76 -------TAKA-----FADEI--------GIPFMETSAK--------------DSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        76 -------~~~~-----~~~~~--------~~~~~~~Sa~--------------~~~~i~~l~~~i~~~~~~  112 (144)
                             ....     +....        ..+++++||+              ++.|++++++.+...+..
T Consensus       255 ~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          255 ELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence                   1111     11111        1378999999              999999999999887753

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.22  E-value=2.8e-12  Score=91.33  Aligned_cols=86  Identities=9%  Similarity=0.055  Sum_probs=47.2

Q ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH--HHHHHHHHHcCCcEEEeecCCCCCH
Q 032243           22 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY--ETAKAFADEIGIPFMETSAKDSTNV   99 (144)
Q Consensus        22 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i   99 (144)
                      +|+++++++.+.......-..++..+..    ..|+++|+||+|+....+...  ..+.......+++++.+||.++.|+
T Consensus       116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~  191 (274)
T 3t5d_A          116 VQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEE  191 (274)
T ss_dssp             CCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC--------
T ss_pred             eeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhH
Confidence            7899999976653211111233444432    589999999999864333211  2234445566889999999999999


Q ss_pred             HHHHHHHHHHHH
Q 032243          100 EQAFMAMAASIK  111 (144)
Q Consensus       100 ~~l~~~i~~~~~  111 (144)
                      .+++++|...+.
T Consensus       192 ~~l~~~l~~~~p  203 (274)
T 3t5d_A          192 NKLVKKIKDRLP  203 (274)
T ss_dssp             ---CHHHHHTCS
T ss_pred             HHHHHHHhcCCC
Confidence            999999887653

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.20  E-value=1.1e-12  Score=102.58  Aligned_cols=97  Identities=19%  Similarity=0.199  Sum_probs=56.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHH---HH---HHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcccC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SF---NNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVVS   73 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~   73 (144)
                      .||||||+++|...+..++..+|++|||+|+++..   .+   ......+..+...   ..| +++++||+|+.+.....
T Consensus       258 ~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~~~~~~~  334 (592)
T 3mca_A          258 EIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLMSWSEDR  334 (592)
T ss_dssp             -CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGGTTCHHH
T ss_pred             EEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEeccccccccHHH
Confidence            48999999999999889999999999999987521   11   0111112222222   355 89999999985421111


Q ss_pred             ----HHHHHHHH-HHcCC-----cEEEeecCCCCCHH
Q 032243           74 ----YETAKAFA-DEIGI-----PFMETSAKDSTNVE  100 (144)
Q Consensus        74 ----~~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~  100 (144)
                          ..++..+. ...++     +++++||++|.|+.
T Consensus       335 ~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          335 FQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             HHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             HHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence                12233333 33444     69999999999998

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.20  E-value=1.1e-10  Score=90.21  Aligned_cols=64  Identities=19%  Similarity=0.147  Sum_probs=48.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~   68 (144)
                      +||||||+.+|...+..++..+|++|+|+|+++..... ...++....   ....|+++++||+|+..
T Consensus        85 ~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~~---~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           85 NLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVTR---LRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             EEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHHT---TTTCCEEEEEECTTSCC
T ss_pred             EEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHHH---HcCCCEEEEEcCcCCcc
Confidence            48999999999998889999999999999998743211 122222222   23589999999999854

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.17  E-value=2e-10  Score=91.40  Aligned_cols=64  Identities=19%  Similarity=0.190  Sum_probs=49.8

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~   68 (144)
                      +||||||+.+|...+..++..+|++|+|+|+++......... +.....   .+.|+++++||+|+..
T Consensus        85 ~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~-~~~~~~---~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           85 NIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETV-WRQANK---YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHH-HHHHHH---cCCCEEEEEeCCCccc
Confidence            489999999999999999999999999999987654443332 233322   2589999999999853

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.17  E-value=1.1e-10  Score=87.64  Aligned_cols=110  Identities=15%  Similarity=0.151  Sum_probs=77.8

Q ss_pred             ceeccchhH----Hhhhhhh---hhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCccc
Q 032243            2 QWDTAGQER----FRTITSS---YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         2 i~Dt~G~~~----~~~~~~~---~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      +|||+|..+    +..+...   .+++++.+++++|++ ..++.++..+...+..+..  ...|.++++||.|+... . 
T Consensus       209 l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-  285 (416)
T 1udx_A          209 LADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-  285 (416)
T ss_dssp             EEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-
T ss_pred             EEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-
Confidence            799999732    2112222   256799999999997 5566666666665544321  14789999999998543 1 


Q ss_pred             CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      ............+++++.+||+++.|++++++.|...+....
T Consensus       286 ~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~~  327 (416)
T 1udx_A          286 AVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTP  327 (416)
T ss_dssp             HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhcc
Confidence            133344445556789999999999999999999999987543

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.16  E-value=8.2e-11  Score=79.97  Aligned_cols=105  Identities=12%  Similarity=0.194  Sum_probs=70.1

Q ss_pred             Cceeccchh----------HHhhhhhhhh---cCCCEEEEEEeCCCHHHHHH--HHHHHHHHHHhcCCCCcEEEEEeCCC
Q 032243            1 MQWDTAGQE----------RFRTITSSYY---RGAHGIIIVYDVTDQESFNN--VKQWLNEIDRYASDNVNKLLVGNKCD   65 (144)
Q Consensus         1 qi~Dt~G~~----------~~~~~~~~~~---~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ilv~nK~D   65 (144)
                      ++|||+|..          .|......++   ..++++++++|+++..++.+  +..|+.    .  ...|+++++||.|
T Consensus        75 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~----~--~~~~~~~v~nK~D  148 (210)
T 1pui_A           75 RLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV----D--SNIAVLVLLTKAD  148 (210)
T ss_dssp             EEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH----H--TTCCEEEEEECGG
T ss_pred             EEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH----H--cCCCeEEEEeccc
Confidence            379999973          3444444555   47899999999987544432  222322    1  2588999999999


Q ss_pred             CCCCccc--CHHHHHHHHHHcC--CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           66 LTANKVV--SYETAKAFADEIG--IPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        66 l~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +......  ....+..++...+  +.++++||+++.|++++++.|.+.+.
T Consensus       149 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          149 KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence            8643211  1123333444443  47789999999999999999988764

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.16  E-value=8.9e-11  Score=86.97  Aligned_cols=97  Identities=22%  Similarity=0.341  Sum_probs=70.7

Q ss_pred             chhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHH----HHH
Q 032243            7 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKA----FAD   82 (144)
Q Consensus         7 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~----~~~   82 (144)
                      .+++|.++++.++++++++++|+|++++.+     .|...+..... ..|+++|+||+|+.+.. ...+....    +++
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~  129 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE  129 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence            478899999999999999999999998763     23333333332 58999999999996543 22333332    345


Q ss_pred             HcCC---cEEEeecCCCCCHHHHHHHHHHHH
Q 032243           83 EIGI---PFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        83 ~~~~---~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      ..++   .++.+||++|.|++++++.+....
T Consensus       130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             TTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            5666   689999999999999999887654

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.15  E-value=1.5e-10  Score=81.37  Aligned_cols=106  Identities=17%  Similarity=0.067  Sum_probs=65.7

Q ss_pred             ceeccchhHHhhhhh------hhhcCCCEEEEEEeCCCH---HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243            2 QWDTAGQERFRTITS------SYYRGAHGIIIVYDVTDQ---ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      ||||||+.++.....      ..+.+ +++++++|....   ..+.....+.......  ...|+++|+||+|+......
T Consensus       113 iiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~~~~~~  189 (262)
T 1yrb_A          113 LIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSEEEK  189 (262)
T ss_dssp             EEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCHHHH
T ss_pred             EEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEecccccccccH
Confidence            899999987643321      24466 899999987542   2222221111111111  14799999999998643211


Q ss_pred             CHHHHHH----------------------------HHHHcC--CcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           73 SYETAKA----------------------------FADEIG--IPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        73 ~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                        .+...                            +++..+  .+++++||+++.|+++++++|.+.+..
T Consensus       190 --~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          190 --ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             --HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence              11111                            123333  489999999999999999999988753

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.15  E-value=5e-11  Score=86.06  Aligned_cols=109  Identities=14%  Similarity=0.209  Sum_probs=67.5

Q ss_pred             CceeccchhH-------------HhhhhhhhhcCCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243            1 MQWDTAGQER-------------FRTITSSYYRGAHGIIIVYDVTDQESF-NNVKQWLNEIDRYASDNVNKLLVGNKCDL   66 (144)
Q Consensus         1 qi~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl   66 (144)
                      .||||||..+             +..++..++.++|++++|+|.++.... .+...++..+   .....|+++|+||+|+
T Consensus       134 ~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK~Dl  210 (315)
T 1jwy_B          134 TLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITKLDL  210 (315)
T ss_dssp             EEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEECTTS
T ss_pred             EEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcCccc
Confidence            3799999743             667788899999999999997433211 1111222222   2236899999999998


Q ss_pred             CCCcccCHHHHHHHHHHcCCcEEEeecCC------CCCHHHHHHHHHHHHHH
Q 032243           67 TANKVVSYETAKAFADEIGIPFMETSAKD------STNVEQAFMAMAASIKD  112 (144)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~~i~~l~~~i~~~~~~  112 (144)
                      ........+.+.......+..++++++.+      +.|+.++++.+...+..
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~  262 (315)
T 1jwy_B          211 MDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN  262 (315)
T ss_dssp             SCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred             CCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence            65443212222110011224566665544      68899999988888753

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.13  E-value=2.4e-10  Score=90.79  Aligned_cols=64  Identities=22%  Similarity=0.295  Sum_probs=51.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~   68 (144)
                      +||||||+.+|...+..++..+|++|+|+|+++..+......| ..+...   ..|+++++||+|+..
T Consensus        78 ~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~~---~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           78 NIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATTY---GVPRIVFVNKMDKLG  141 (693)
T ss_dssp             EEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHHT---TCCEEEEEECTTSTT
T ss_pred             EEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHHc---CCCEEEEEECCCccc
Confidence            4899999999999999999999999999999886665554443 333332   589999999999864

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.11  E-value=2.8e-11  Score=89.19  Aligned_cols=99  Identities=13%  Similarity=0.157  Sum_probs=65.5

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA   81 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~   81 (144)
                      ||||+|...   .....+..+|++++|+|....+.+..+..      ..  ...|+++|+||+|+.+.... ......+.
T Consensus       176 iiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~------~~--~~~p~ivVlNK~Dl~~~~~~-~~~~~~l~  243 (355)
T 3p32_A          176 LIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK------GV--LELADIVVVNKADGEHHKEA-RLAARELS  243 (355)
T ss_dssp             EEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT------TS--GGGCSEEEEECCCGGGHHHH-HHHHHHHH
T ss_pred             EEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH------hH--hhcCCEEEEECCCCcChhHH-HHHHHHHH
Confidence            799999432   22344688999999999865443322111      01  13689999999998532221 11112222


Q ss_pred             HH---c-------CCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           82 DE---I-------GIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        82 ~~---~-------~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      ..   .       +.+++++||++|.|++++++.|.+.+..
T Consensus       244 ~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          244 AAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            21   1       4689999999999999999999998865

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.05  E-value=5.1e-10  Score=80.09  Aligned_cols=100  Identities=15%  Similarity=0.137  Sum_probs=70.4

Q ss_pred             eccchh-HHhhhhhhhhcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            4 DTAGQE-RFRTITSSYYRGAHGIIIVYDVTDQESFN--NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         4 Dt~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ..||+. +........++++|++++|+|+.++.+..  .+..++        ...|.++|+||+|+.+...  .+....+
T Consensus         5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~~~   74 (282)
T 1puj_A            5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWKEH   74 (282)
T ss_dssp             ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHHHH
Confidence            357775 55556667799999999999999886553  333332        3589999999999964211  1222334


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      .+..+++++.+||.++.|++++++.+...+...
T Consensus        75 ~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~  107 (282)
T 1puj_A           75 FENQGIRSLSINSVNGQGLNQIVPASKEILQEK  107 (282)
T ss_dssp             HHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             HHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            445578999999999999999999888887643

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.04  E-value=1.8e-10  Score=78.97  Aligned_cols=99  Identities=19%  Similarity=0.186  Sum_probs=64.5

Q ss_pred             ceeccchhHHhhhhhhhh-cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            2 QWDTAGQERFRTITSSYY-RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +|||+|+..    .+.++ ...+.+++|+|+++...  ....+..   ..   ..|.++++||+|+.+.......+....
T Consensus       113 iidt~G~~~----~~~~~~~~~~~~i~vvd~~~~~~--~~~~~~~---~~---~~~~iiv~NK~Dl~~~~~~~~~~~~~~  180 (221)
T 2wsm_A          113 LIENVGNLI----CPVDFDLGENYRVVMVSVTEGDD--VVEKHPE---IF---RVADLIVINKVALAEAVGADVEKMKAD  180 (221)
T ss_dssp             EEEEEEBSS----GGGGCCCSCSEEEEEEEGGGCTT--HHHHCHH---HH---HTCSEEEEECGGGHHHHTCCHHHHHHH
T ss_pred             EEeCCCCCC----CCchhccccCcEEEEEeCCCcch--hhhhhhh---hh---hcCCEEEEecccCCcchhhHHHHHHHH
Confidence            788888511    11111 25789999999875431  1111111   11   368999999999853222345555555


Q ss_pred             HHHc--CCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           81 ADEI--GIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        81 ~~~~--~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      +...  +++++++||++|.|+++++++|...+..
T Consensus       181 ~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~  214 (221)
T 2wsm_A          181 AKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV  214 (221)
T ss_dssp             HHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred             HHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence            5554  3689999999999999999999988753

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=98.95  E-value=6e-10  Score=78.75  Aligned_cols=71  Identities=14%  Similarity=0.091  Sum_probs=47.8

Q ss_pred             CceeccchhHHhhhhhhhhc---------CCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCC--CCcEEEEEeCCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYR---------GAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASD--NVNKLLVGNKCDLTA   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~---------~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~   68 (144)
                      +||||||+.+|....+.+++         ++|++++|++++... +... ..|+..+......  ..|+++|+||+|+.+
T Consensus        87 ~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~  165 (262)
T 3def_A           87 NIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP  165 (262)
T ss_dssp             EEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred             EEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence            48999999776555444443         789999999987644 3333 3566666554332  248999999999864


Q ss_pred             Cccc
Q 032243           69 NKVV   72 (144)
Q Consensus        69 ~~~~   72 (144)
                      ....
T Consensus       166 ~~~~  169 (262)
T 3def_A          166 PDEL  169 (262)
T ss_dssp             STTC
T ss_pred             CCCc
Confidence            4333

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.93  E-value=1.9e-10  Score=85.93  Aligned_cols=49  Identities=18%  Similarity=0.167  Sum_probs=32.4

Q ss_pred             CCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHH
Q 032243           54 NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  104 (144)
Q Consensus        54 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  104 (144)
                      ..|+++++||.|+. ... ............+.+++++||+.+.++.++++
T Consensus       214 ~kP~i~v~NK~D~~-~~~-~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~  262 (397)
T 1wxq_A          214 NKPMVIAANKADAA-SDE-QIKRLVREEEKRGYIVIPTSAAAELTLRKAAK  262 (397)
T ss_dssp             HSCEEEEEECGGGS-CHH-HHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred             CCCEEEEEeCcccc-chH-HHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence            38999999999985 211 11222222222367899999999988876543

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.92  E-value=1.1e-10  Score=84.35  Aligned_cols=107  Identities=19%  Similarity=0.181  Sum_probs=58.7

Q ss_pred             Cceeccch-------hHHhhhhh-------hhhcC-------------CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC
Q 032243            1 MQWDTAGQ-------ERFRTITS-------SYYRG-------------AHGIIIVYDVTDQESFNNVKQWLNEIDRYASD   53 (144)
Q Consensus         1 qi~Dt~G~-------~~~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~   53 (144)
                      ++|||+|+       +++..+..       .++..             +++++++.+.+.. +++.+..  ..+.... .
T Consensus        79 tv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~--~~l~~l~-~  154 (301)
T 2qnr_A           79 TVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDV--AFMKAIH-N  154 (301)
T ss_dssp             EEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHH--HHHHHHT-T
T ss_pred             chhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHH--HHHHHHH-h
Confidence            37999998       55555554       44433             3445555554321 2322221  2222222 3


Q ss_pred             CCcEEEEEeCCCCCCCccc--CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           54 NVNKLLVGNKCDLTANKVV--SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        54 ~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      ..++++|+||.|+....++  ..+++..++...+++++++||+++ |++++|..+.+.+..
T Consensus       155 ~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          155 KVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             TSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred             cCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence            5799999999998654332  134667778888999999999999 999999999988864

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.89  E-value=2e-09  Score=78.93  Aligned_cols=100  Identities=16%  Similarity=0.147  Sum_probs=61.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH--HHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY--ETAK   78 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~   78 (144)
                      .||||+|...+..   .....+|++++|+|.+....+..+..   ..  .   ..|.++|+||+|+.+......  .+..
T Consensus       152 ~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~--~---~~p~ivv~NK~Dl~~~~~~~~~~~~l~  220 (341)
T 2p67_A          152 VIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL--M---EVADLIVINKDDGDNHTNVAIARHMYE  220 (341)
T ss_dssp             EEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH--H---HHCSEEEECCCCTTCHHHHHHHHHHHH
T ss_pred             EEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh--h---cccCEEEEECCCCCChHHHHHHHHHHH
Confidence            3799999654433   24688999999999875432211111   11  1   257899999999854222110  1111


Q ss_pred             HHHHHc-------CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           79 AFADEI-------GIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        79 ~~~~~~-------~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ......       ..+++++||++|.|++++++.|...+.
T Consensus       221 ~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          221 SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            111122       346899999999999999999998765

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.85  E-value=4.4e-10  Score=82.67  Aligned_cols=106  Identities=15%  Similarity=0.108  Sum_probs=64.2

Q ss_pred             Cceeccch-------------hHHhhhhhhhhcCCCEEEE-EEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243            1 MQWDTAGQ-------------ERFRTITSSYYRGAHGIII-VYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL   66 (144)
Q Consensus         1 qi~Dt~G~-------------~~~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl   66 (144)
                      .||||||.             +.+..+...|+.+.+.+++ |+|.+..-.-.+...++   ....+...|+++|+||.|+
T Consensus       133 ~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~---~~~~~~~~~~i~V~NK~Dl  209 (353)
T 2x2e_A          133 TLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVA---KEVDPQGQRTIGVITKLDL  209 (353)
T ss_dssp             EEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHH---HHHCTTCTTEEEEEECGGG
T ss_pred             EEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHH---HHhCcCCCceEEEeccccc
Confidence            38999995             2567788888877665555 55554321111111222   2233346899999999998


Q ss_pred             CCCcccCHHHHHHHHH--HcCC-cEEEeecCCCCCHHHHHHHHHHH
Q 032243           67 TANKVVSYETAKAFAD--EIGI-PFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        67 ~~~~~~~~~~~~~~~~--~~~~-~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      .+..............  ..++ +++.+||+++.|++++++.+...
T Consensus       210 ~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e  255 (353)
T 2x2e_A          210 MDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  255 (353)
T ss_dssp             SCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred             cCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence            6543311211110000  1122 56789999999999999988774

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=98.84  E-value=2.4e-08  Score=77.42  Aligned_cols=63  Identities=16%  Similarity=0.167  Sum_probs=47.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      +|+||||+..|..-....+.-+|++|+|+|+.+----.. ...+.....+   ++|.++++||+|..
T Consensus       103 NlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT-~~v~~~a~~~---~lp~i~fINK~Dr~  165 (548)
T 3vqt_A          103 NLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQT-RKLMDVCRMR---ATPVMTFVNKMDRE  165 (548)
T ss_dssp             EEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHH-HHHHHHHHHT---TCCEEEEEECTTSC
T ss_pred             EEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCccccc-HHHHHHHHHh---CCceEEEEecccch
Confidence            589999999999988888999999999999876322222 2233333333   58999999999974

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.80  E-value=1.5e-08  Score=74.51  Aligned_cols=99  Identities=10%  Similarity=0.089  Sum_probs=59.5

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA   81 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~   81 (144)
                      |+||+|...   ......+.+|++++|+|.+.......+..   .+   .  ..|.++++||+|+.+.... ......+.
T Consensus       171 liDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i---l--~~~~ivVlNK~Dl~~~~~~-~~~~~~l~  238 (349)
T 2www_A          171 LIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI---I--EMADLVAVTKSDGDLIVPA-RRIQAEYV  238 (349)
T ss_dssp             EEECCCC-----CHHHHHTTCSEEEEEECCC------------------C--CSCSEEEECCCSGGGHHHH-HHHHHHHH
T ss_pred             EEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH---H--hcCCEEEEeeecCCCchhH-HHHHHHHH
Confidence            789999531   12345678999999999876432221111   11   1  3578999999998431111 11112221


Q ss_pred             HH----------cCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           82 DE----------IGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        82 ~~----------~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      ..          ++.+++.+||++|.|+++++++|...+..
T Consensus       239 ~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          239 SALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            11          13478999999999999999999887643

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=98.78  E-value=5.9e-09  Score=73.89  Aligned_cols=70  Identities=13%  Similarity=0.075  Sum_probs=45.7

Q ss_pred             CceeccchhHHhhh-------hhhh--hcCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCC--CcEEEEEeCCCCCC
Q 032243            1 MQWDTAGQERFRTI-------TSSY--YRGAHGIIIVYDVTDQESFNNV-KQWLNEIDRYASDN--VNKLLVGNKCDLTA   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~~-------~~~~--~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~--~p~ilv~nK~Dl~~   68 (144)
                      +||||||+.++..+       +..+  ..++|++++|+|++.. ++... ..|+..+.......  .|+++|+||+|+.+
T Consensus        90 ~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~  168 (270)
T 1h65_A           90 NIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  168 (270)
T ss_dssp             EEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             EEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence            48999998665422       2222  2479999999998653 23332 35666665543322  69999999999965


Q ss_pred             Ccc
Q 032243           69 NKV   71 (144)
Q Consensus        69 ~~~   71 (144)
                      ...
T Consensus       169 ~~~  171 (270)
T 1h65_A          169 PDG  171 (270)
T ss_dssp             GGG
T ss_pred             cCC
Confidence            543

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.73  E-value=4.5e-09  Score=85.14  Aligned_cols=63  Identities=17%  Similarity=0.263  Sum_probs=51.8

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      +||||||+.+|...+..++..+|++|+|+|+++..++.....|.... .   ...|+++++||+|+.
T Consensus       101 ~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~  163 (842)
T 1n0u_A          101 NLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHH
T ss_pred             EEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcc
Confidence            48999999999999999999999999999999876666654443322 2   258999999999984

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.73  E-value=2.1e-09  Score=80.77  Aligned_cols=90  Identities=10%  Similarity=0.128  Sum_probs=43.5

Q ss_pred             hhcCCCEEEEEEeCCCH-HHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH--HHHHHHHHHcCCcEEEeec
Q 032243           18 YYRGAHGIIIVYDVTDQ-ESFNNVK-QWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY--ETAKAFADEIGIPFMETSA   93 (144)
Q Consensus        18 ~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~Sa   93 (144)
                      ++.++++.+++|+.... .++.... .|+..+.    ...|+|+|+||+|+.....+..  ..+...+...+++++++|+
T Consensus       133 l~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa  208 (418)
T 2qag_C          133 QMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPE  208 (418)
T ss_dssp             CCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-
T ss_pred             hccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCC
Confidence            44555543344433322 2333332 4555443    2589999999999976554433  4566677778999999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 032243           94 KDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        94 ~~~~~i~~l~~~i~~~~~  111 (144)
                      +++.++.++|..+...+.
T Consensus       209 ~~~~~v~~~~~~l~~~iP  226 (418)
T 2qag_C          209 TDDEEENKLVKKIKDRLP  226 (418)
T ss_dssp             ----------------CC
T ss_pred             CCCcCHHHHHHHHHhhCC
Confidence            999999998887776543

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.68  E-value=2.2e-08  Score=78.92  Aligned_cols=63  Identities=16%  Similarity=0.199  Sum_probs=47.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      +|.||||+..|.......+.-+|++|+|+|+.+--.-. ....+.....+   ++|.++++||+|..
T Consensus        70 NlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~q-T~~v~~~a~~~---~lp~i~~INKmDr~  132 (638)
T 3j25_A           70 NIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQ-TRILFHALRKM---GIPTIFFINKIDQN  132 (638)
T ss_dssp             CCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSH-HHHHHHHHHHH---TCSCEECCEECCSS
T ss_pred             EEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHH-HHHHHHHHHHc---CCCeEEEEeccccc
Confidence            58999999999998888899999999999987532111 12333444444   48899999999974

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.65  E-value=1.2e-08  Score=72.27  Aligned_cols=90  Identities=14%  Similarity=0.101  Sum_probs=60.7

Q ss_pred             cchhH-HhhhhhhhhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH
Q 032243            6 AGQER-FRTITSSYYRGAHGIIIVYDVTDQESFNN--VKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFAD   82 (144)
Q Consensus         6 ~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~   82 (144)
                      ||+.. ........+.++|++++|+|+.++.+...  +. ++         ..|.++|+||+|+.+...  .+....+.+
T Consensus         5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---------~k~~iivlNK~DL~~~~~--~~~~~~~~~   72 (262)
T 3cnl_A            5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---------RKETIILLNKVDIADEKT--TKKWVEFFK   72 (262)
T ss_dssp             ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---------TSEEEEEEECGGGSCHHH--HHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---------CCCcEEEEECccCCCHHH--HHHHHHHHH
Confidence            56642 23345566899999999999998765432  22 21         479999999999965311  223334455


Q ss_pred             HcCCcEEEeecCCCCCHHHHHHHHHH
Q 032243           83 EIGIPFMETSAKDSTNVEQAFMAMAA  108 (144)
Q Consensus        83 ~~~~~~~~~Sa~~~~~i~~l~~~i~~  108 (144)
                      ..+.++ .+||.++.|++++++.+..
T Consensus        73 ~~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           73 KQGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             HTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             HcCCeE-EEECCCCcCHHHHHHHHHH
Confidence            567888 9999999999999887654

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.65  E-value=1e-08  Score=79.55  Aligned_cols=67  Identities=18%  Similarity=0.220  Sum_probs=50.6

Q ss_pred             CceeccchhH-----------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQER-----------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   69 (144)
                      .||||||...           |...+..++.++|++++|+|+++.........++..+...   ..|+++|+||+|+...
T Consensus       157 ~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~---~~pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          157 SIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH---EDKIRVVLNKADMVET  233 (550)
T ss_dssp             EEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC---GGGEEEEEECGGGSCH
T ss_pred             EEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc---CCCEEEEEECCCccCH
Confidence            3899999864           6677888899999999999998754444445555555332   4789999999998654


Q ss_pred             c
Q 032243           70 K   70 (144)
Q Consensus        70 ~   70 (144)
                      .
T Consensus       234 ~  234 (550)
T 2qpt_A          234 Q  234 (550)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.64  E-value=8.1e-09  Score=74.65  Aligned_cols=92  Identities=14%  Similarity=0.202  Sum_probs=63.1

Q ss_pred             HHhhhhhhhhcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHHcCC
Q 032243           10 RFRTITSSYYRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--SYETAKAFADEIGI   86 (144)
Q Consensus        10 ~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~   86 (144)
                      |-+.+.+..+.++|.+++|+|+.++. +...+..++......   .+|.++|+||+||.+....  ..+......+..+.
T Consensus        75 R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~---~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~  151 (307)
T 1t9h_A           75 RTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN---DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGY  151 (307)
T ss_dssp             CSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT---TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTC
T ss_pred             hhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC---CCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCC
Confidence            33445667789999999999998654 444455555444332   5889999999999654220  02334445556788


Q ss_pred             cEEEeecCCCCCHHHHHH
Q 032243           87 PFMETSAKDSTNVEQAFM  104 (144)
Q Consensus        87 ~~~~~Sa~~~~~i~~l~~  104 (144)
                      +++.+||.++.|++++++
T Consensus       152 ~v~~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          152 DVYLTSSKDQDSLADIIP  169 (307)
T ss_dssp             CEEECCHHHHTTCTTTGG
T ss_pred             eEEEEecCCCCCHHHHHh
Confidence            999999999888776554

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.64  E-value=7.8e-09  Score=82.61  Aligned_cols=103  Identities=18%  Similarity=0.166  Sum_probs=67.3

Q ss_pred             ceeccch-------------hHHhhhhhhhh-cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            2 QWDTAGQ-------------ERFRTITSSYY-RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         2 i~Dt~G~-------------~~~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      |+||||.             ..+..+...|+ ..+|++++|+|++....-.+...++..+.   ....|+++|+||+|+.
T Consensus       154 LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~---~~g~pvIlVlNKiDlv  230 (772)
T 3zvr_A          154 LVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITKLDLM  230 (772)
T ss_dssp             EEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC---TTCSSEEEEEECTTSS
T ss_pred             EEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH---hcCCCEEEEEeCcccC
Confidence            7899994             23556667776 47899999999886432222222333332   2358999999999997


Q ss_pred             CCcccCHHHHHHHHHH----cC-CcEEEeecCCCCCHHHHHHHHHHH
Q 032243           68 ANKVVSYETAKAFADE----IG-IPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        68 ~~~~~~~~~~~~~~~~----~~-~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      +....... ... .+.    .+ .+++.+||++|.|++++++.+...
T Consensus       231 ~~~~~~~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          231 DEGTDARD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             CTTCCSHH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             CcchhhHH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            54433221 111 111    12 257789999999999999998874

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.60  E-value=1.4e-07  Score=68.97  Aligned_cols=99  Identities=10%  Similarity=0.120  Sum_probs=59.7

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA   81 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~   81 (144)
                      |+||+|...-.   ....+.+|.+++|+|....+....+...   +.     ..+.++++||.|+.............+.
T Consensus       152 liDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~~~~l~  220 (337)
T 2qm8_A          152 LVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAAASEYR  220 (337)
T ss_dssp             EEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHHHHHHH
T ss_pred             EEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHHHHHHH
Confidence            68999964321   2335789999999998643322111111   11     1356777899997543222112222232


Q ss_pred             HHc----------CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           82 DEI----------GIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        82 ~~~----------~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ...          ..+++.+||+++.|++++++.|.+...
T Consensus       221 ~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          221 AALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            211          347899999999999999999988764

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.55  E-value=4.6e-07  Score=66.88  Aligned_cols=42  Identities=10%  Similarity=0.024  Sum_probs=29.8

Q ss_pred             CCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCC
Q 032243           54 NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD   95 (144)
Q Consensus        54 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~   95 (144)
                      ..|+++++|+.|..-........+..++...+.+++++||+.
T Consensus       199 ~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~  240 (363)
T 1jal_A          199 LKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI  240 (363)
T ss_dssp             TSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             CCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence            489999999999632111224556667777788999999764

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.45  E-value=1.1e-06  Score=70.10  Aligned_cols=63  Identities=21%  Similarity=0.246  Sum_probs=47.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      +|+||||+-.|..-....+.=+|++|+|+|+.+--... ....+......   +.|.++++||+|..
T Consensus        88 NlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~q-T~~v~~~a~~~---~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           88 NVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQ-SETVWRQANKY---GVPRIVYVNKMDRQ  150 (709)
T ss_dssp             EEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHHH---TCCEEEEEECSSST
T ss_pred             EEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchh-HHHHHHHHHHc---CCCeEEEEcccccc
Confidence            48999999999988888899999999999987532112 22333333333   48999999999974

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.44  E-value=8e-07  Score=65.48  Aligned_cols=86  Identities=20%  Similarity=0.244  Sum_probs=57.9

Q ss_pred             hhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC-HHHHHHHHHHcCCcEEEeecCCC
Q 032243           18 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS-YETAKAFADEIGIPFMETSAKDS   96 (144)
Q Consensus        18 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~   96 (144)
                      .+.++|.+++|++..-..+...+..++......   .+|.++|+||+||.+..... .+.........|++++.+||.++
T Consensus       127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~  203 (358)
T 2rcn_A          127 IAANIDQIVIVSAILPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ  203 (358)
T ss_dssp             EEECCCEEEEEEESTTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred             HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            368999999987764333445556665554433   47889999999996532100 11223334466889999999999


Q ss_pred             CCHHHHHHHH
Q 032243           97 TNVEQAFMAM  106 (144)
Q Consensus        97 ~~i~~l~~~i  106 (144)
                      .|++++...+
T Consensus       204 ~gl~~L~~~~  213 (358)
T 2rcn_A          204 DGLKPLEEAL  213 (358)
T ss_dssp             BTHHHHHHHH
T ss_pred             cCHHHHHHhc
Confidence            9999887643

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.43  E-value=5.9e-07  Score=66.47  Aligned_cols=51  Identities=16%  Similarity=0.050  Sum_probs=35.0

Q ss_pred             CCcEEEEEeCCCC--CCC-cccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHH
Q 032243           54 NVNKLLVGNKCDL--TAN-KVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  104 (144)
Q Consensus        54 ~~p~ilv~nK~Dl--~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  104 (144)
                      ..|+++++||.|.  .+. +....+.+..+++..+.+++++||+...++.++.+
T Consensus       201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~  254 (368)
T 2dby_A          201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSG  254 (368)
T ss_dssp             GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCH
T ss_pred             cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhch
Confidence            3799999999984  221 11224566677777789999999988655554443

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.38  E-value=3.2e-07  Score=62.82  Aligned_cols=58  Identities=21%  Similarity=0.201  Sum_probs=45.3

Q ss_pred             CcEEEEEeCCCCCCCcccCHHHHHHHHHHc--CCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           55 VNKLLVGNKCDLTANKVVSYETAKAFADEI--GIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        55 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      .|.++++||+|+.+.......+...++...  +.+++++||++|.|++++|+.+...+..
T Consensus       165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            678999999998543334456666666654  4689999999999999999999887753

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.44  E-value=0.00012  Score=56.28  Aligned_cols=97  Identities=14%  Similarity=0.040  Sum_probs=56.6

Q ss_pred             ceeccchhHHh-hhh---hhh--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcE-EEEEeCCCCCCCcccCH
Q 032243            2 QWDTAGQERFR-TIT---SSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK-LLVGNKCDLTANKVVSY   74 (144)
Q Consensus         2 i~Dt~G~~~~~-~~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~~~~~~~~   74 (144)
                      |+||||..... .++   ...  +-.+|.++||+|......  .+ .....+...    .|+ .+|+||.|......   
T Consensus       188 IIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~-~~a~~~~~~----~~i~gvVlNK~D~~~~~g---  257 (504)
T 2j37_W          188 IVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CE-AQAKAFKDK----VDVASVIVTKLDGHAKGG---  257 (504)
T ss_dssp             EEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HH-HHHHHHHHH----HCCCCEEEECTTSCCCCT---
T ss_pred             EEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HH-HHHHHHHhh----cCceEEEEeCCccccchH---
Confidence            79999975321 111   111  227899999999876422  11 112222221    464 88999999753322   


Q ss_pred             HHHHHHHHHcCCcE------------------EEeecCCCCC-HHHHHHHHHHH
Q 032243           75 ETAKAFADEIGIPF------------------METSAKDSTN-VEQAFMAMAAS  109 (144)
Q Consensus        75 ~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~l~~~i~~~  109 (144)
                       .........+.|+                  +.+|+..|.| +.++++++.+.
T Consensus       258 -~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          258 -GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             -HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             -HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence             1222333444443                  3468888988 98888888765

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=97.44  E-value=0.0015  Score=48.34  Aligned_cols=101  Identities=13%  Similarity=0.097  Sum_probs=56.4

Q ss_pred             CceeccchhHH--------hhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCC--
Q 032243            1 MQWDTAGQERF--------RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA--SDNVNKLLVGNKCDLTA--   68 (144)
Q Consensus         1 qi~Dt~G~~~~--------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~--   68 (144)
                      +|+||||..+.        +.. -..++++|++++|+|.+++-  .+...+...+....  ....|.++++||.|...  
T Consensus       122 ~l~D~pGl~~~a~~~~~~g~~~-l~~i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~  198 (376)
T 4a9a_A          122 QMLDLPGIIDGAKDGRGRGKQV-IAVARTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGIS  198 (376)
T ss_dssp             EEEECGGGCCC-----CHHHHH-HHHHHHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEE
T ss_pred             EEEeCCCccCCchhhhHHHHHH-HHHHHhcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhh
Confidence            57999996321        111 22357899999999999863  23333333332221  12568889999999631  


Q ss_pred             ------CcccCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHH
Q 032243           69 ------NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFM  104 (144)
Q Consensus        69 ------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  104 (144)
                            ......++...+.....+..-++-...+...+++.+
T Consensus       199 i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv~eddl~d  240 (376)
T 4a9a_A          199 ITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLID  240 (376)
T ss_dssp             EEESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCCCHHHHHH
T ss_pred             hhcchhhhhccHHHHHHHHHHhcccCCCeeecccCCHHHHHH
Confidence                  123445565555555554333333334445555444

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=96.84  E-value=0.00045  Score=51.52  Aligned_cols=35  Identities=17%  Similarity=0.083  Sum_probs=21.7

Q ss_pred             CceeccchhHHhh-------hhhhhhcCCCEEEEEEeCCCHH
Q 032243            1 MQWDTAGQERFRT-------ITSSYYRGAHGIIIVYDVTDQE   35 (144)
Q Consensus         1 qi~Dt~G~~~~~~-------~~~~~~~~~d~~i~v~d~~~~~   35 (144)
                      +||||||+.++..       .+..+++++|++++|+|+++.+
T Consensus        89 ~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~  130 (396)
T 2ohf_A           89 NVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDD  130 (396)
T ss_dssp             EEEECCC-----------CCHHHHHHHTSSSEEEEEEC----
T ss_pred             EEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence            4899999987554       4566788999999999987643

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=96.55  E-value=0.024  Score=42.22  Aligned_cols=56  Identities=9%  Similarity=0.046  Sum_probs=38.4

Q ss_pred             CCcEEEEEeCCCCC---CCcccCHHHHHHHHHHcC--CcEEEeecCC---------------------CCCHHHHHHHHH
Q 032243           54 NVNKLLVGNKCDLT---ANKVVSYETAKAFADEIG--IPFMETSAKD---------------------STNVEQAFMAMA  107 (144)
Q Consensus        54 ~~p~ilv~nK~Dl~---~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~---------------------~~~i~~l~~~i~  107 (144)
                      ..|+++++|+.|..   +.+. ....+..++...+  .+++++||..                     +.|+..+.+...
T Consensus       224 ~kp~~y~~Nv~e~~~~~~~~~-~~~~~~~~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~~~~  302 (392)
T 1ni3_A          224 AKPVIYLVNMSERDFLRQKNK-YLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGY  302 (392)
T ss_dssp             GSCEEEEEECCHHHHTTTCCS-SHHHHHHHHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred             cCceEEEEEecchhhcccchH-HHHHHHHHHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHHHHH
Confidence            38999999999841   1122 2556666776655  7899999886                     467777777665


Q ss_pred             HHH
Q 032243          108 ASI  110 (144)
Q Consensus       108 ~~~  110 (144)
                      +.+
T Consensus       303 ~~L  305 (392)
T 1ni3_A          303 NAL  305 (392)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            544

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.18  E-value=0.01  Score=39.37  Aligned_cols=81  Identities=16%  Similarity=0.057  Sum_probs=50.4

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA--SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      |+|||+..  .......+..+|.+++++..+...  ..+...+..+....  ....++.+|+|+.|...  .. ..+..+
T Consensus        80 iiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~--~~-~~~~~~  152 (206)
T 4dzz_A           80 IVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA--TM-LNVLKE  152 (206)
T ss_dssp             EEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE--EE-EHHHHH
T ss_pred             EEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc--hH-HHHHHH
Confidence            68998765  334455667799999999876543  55556566664432  22467799999998532  12 234445


Q ss_pred             HHHHcCCcEE
Q 032243           80 FADEIGIPFM   89 (144)
Q Consensus        80 ~~~~~~~~~~   89 (144)
                      +.+..+.+++
T Consensus       153 ~l~~~~~~vl  162 (206)
T 4dzz_A          153 SIKDTGVKAF  162 (206)
T ss_dssp             HHHHHTCCBC
T ss_pred             HHHHcCCcee
Confidence            5555565444

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.18  E-value=0.011  Score=44.62  Aligned_cols=87  Identities=18%  Similarity=0.148  Sum_probs=50.2

Q ss_pred             ceeccchhH-----Hhhhhh-hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243            2 QWDTAGQER-----FRTITS-SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE   75 (144)
Q Consensus         2 i~Dt~G~~~-----~~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~   75 (144)
                      |+||+|...     ...+.. ......|.++||+|...-..   .......+...   -.+..+|+||.|....    .-
T Consensus       187 IIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~---a~~~a~~f~~~---~~i~gVIlTKlD~~~~----gG  256 (443)
T 3dm5_A          187 IVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ---AYNQALAFKEA---TPIGSIIVTKLDGSAK----GG  256 (443)
T ss_dssp             EEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHHS---CTTEEEEEECCSSCSS----HH
T ss_pred             EEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh---HHHHHHHHHhh---CCCeEEEEECCCCccc----cc
Confidence            689999532     111111 11336899999999875322   11222233222   2456799999997432    23


Q ss_pred             HHHHHHHHcCCcEEEeecCCCCCHH
Q 032243           76 TAKAFADEIGIPFMETSAKDSTNVE  100 (144)
Q Consensus        76 ~~~~~~~~~~~~~~~~Sa~~~~~i~  100 (144)
                      .+..+....+.|+..++.  |++++
T Consensus       257 ~~ls~~~~~g~PI~fig~--Ge~vd  279 (443)
T 3dm5_A          257 GALSAVAATGAPIKFIGT--GEKID  279 (443)
T ss_dssp             HHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred             HHHHHHHHHCCCEEEEEc--CCChH
Confidence            445566677889888875  54443

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.75  E-value=0.027  Score=40.24  Aligned_cols=88  Identities=14%  Similarity=0.094  Sum_probs=52.7

Q ss_pred             ceeccchhH--Hhh-hhh-----hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCccc
Q 032243            2 QWDTAGQER--FRT-ITS-----SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV   72 (144)
Q Consensus         2 i~Dt~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~   72 (144)
                      |+||||...  ... +..     ..+..+|.+++|+|....   .+.......+..    ..+ ..+|+||.|....   
T Consensus       185 iIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~----~~~i~gvVlnk~D~~~~---  254 (297)
T 1j8m_F          185 IVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ----ASKIGTIIITKMDGTAK---  254 (297)
T ss_dssp             EEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH----TCTTEEEEEECGGGCTT---
T ss_pred             EEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh----hCCCCEEEEeCCCCCcc---
Confidence            689999765  211 221     124478999999998642   112222222222    244 7789999996422   


Q ss_pred             CHHHHHHHHHHcCCcEEEeecCCCCCHHHH
Q 032243           73 SYETAKAFADEIGIPFMETSAKDSTNVEQA  102 (144)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  102 (144)
                       ...+..+....+.|+..++  +|++++++
T Consensus       255 -~g~~~~~~~~~~~pi~~i~--~Ge~v~dl  281 (297)
T 1j8m_F          255 -GGGALSAVAATGATIKFIG--TGEKIDEL  281 (297)
T ss_dssp             -HHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred             -hHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence             3345567777888988877  56666543

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=95.32  E-value=0.22  Score=33.77  Aligned_cols=83  Identities=13%  Similarity=0.121  Sum_probs=54.2

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA   81 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~   81 (144)
                      |+|||+..  .......+..+|.+++++..+ ..+...+..++..+.........+.+|+|+.+...  ....   ..+.
T Consensus       123 iiD~p~~~--~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~---~~~~  194 (245)
T 3ea0_A          123 IVDFGASI--DHVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITS---DEIE  194 (245)
T ss_dssp             EEEEESSC--CTTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCH---HHHH
T ss_pred             EEeCCCCC--chHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCH---HHHH
Confidence            67888754  234455677899999999864 56677777777777655433456789999998532  2223   2344


Q ss_pred             HHcCCcEEEee
Q 032243           82 DEIGIPFMETS   92 (144)
Q Consensus        82 ~~~~~~~~~~S   92 (144)
                      +.++.+++.+-
T Consensus       195 ~~~~~~v~~~i  205 (245)
T 3ea0_A          195 KVIGRPISKRI  205 (245)
T ss_dssp             HHHTSCEEEEE
T ss_pred             HHhCCCeEEEC
Confidence            55677766553

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=95.02  E-value=0.21  Score=33.47  Aligned_cols=81  Identities=12%  Similarity=0.135  Sum_probs=50.5

Q ss_pred             ceeccch-hHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            2 QWDTAGQ-ERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         2 i~Dt~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      |+|||+. ..  ......+..+|.+|+++..+ ..++..+...+..+....  ..++.+|+|+.|..... . ..+....
T Consensus        72 iiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~-~-~~~~~~~  144 (209)
T 3cwq_A           72 VIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPSK-D-GDEARQL  144 (209)
T ss_dssp             EEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTSC-H-HHHHHHH
T ss_pred             EEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccch-H-HHHHHHH
Confidence            6788876 32  23345677899999999865 455666666666665533  35688999999863201 1 3444455


Q ss_pred             HHHcCCcEE
Q 032243           81 ADEIGIPFM   89 (144)
Q Consensus        81 ~~~~~~~~~   89 (144)
                      .+..+.+++
T Consensus       145 l~~~g~~v~  153 (209)
T 3cwq_A          145 LTTAGLPLF  153 (209)
T ss_dssp             HHHTTCCBC
T ss_pred             HHHcCCchh
Confidence            555665443

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=94.91  E-value=0.076  Score=40.03  Aligned_cols=67  Identities=13%  Similarity=0.068  Sum_probs=42.6

Q ss_pred             CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCH
Q 032243           21 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNV   99 (144)
Q Consensus        21 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i   99 (144)
                      ..|.++||+|...-..   .......+....   .+..+|+||.|....    .-.+.......+.|+..++.  |+++
T Consensus       211 ~pd~vlLVlDa~~gq~---a~~~a~~f~~~~---~~~gVIlTKlD~~a~----~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          211 KPDDVILVIDASIGQK---AYDLASRFHQAS---PIGSVIITKMDGTAK----GGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             CCSEEEEEEEGGGGGG---GHHHHHHHHHHC---SSEEEEEECGGGCSC----HHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             CCcceEEEEeCccchH---HHHHHHHHhccc---CCcEEEEeccccccc----chHHHHHHHHHCCCEEEEEC--CCCh
Confidence            5699999999875322   222233333322   467899999996422    33455666677899888885  5554

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=93.94  E-value=0.46  Score=35.76  Aligned_cols=80  Identities=20%  Similarity=0.127  Sum_probs=44.7

Q ss_pred             ceeccchhHHh----hhhhhh--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC-c-EEEEEeCCCCCCCcccC
Q 032243            2 QWDTAGQERFR----TITSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNV-N-KLLVGNKCDLTANKVVS   73 (144)
Q Consensus         2 i~Dt~G~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~ilv~nK~Dl~~~~~~~   73 (144)
                      |+||||.....    ......  +..+|.++||+|.....  + .....   ..... .. | ..+|+||.|....    
T Consensus       185 IIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~-~~~~~---~~~~~-~~~~i~gvVlnK~D~~~~----  253 (432)
T 2v3c_C          185 IIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--Q-AGIQA---KAFKE-AVGEIGSIIVTKLDGSAK----  253 (432)
T ss_dssp             EEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--G-HHHHH---HHHHT-TSCSCEEEEEECSSSCST----
T ss_pred             EEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--H-HHHHH---HHHhh-cccCCeEEEEeCCCCccc----
Confidence            78999965321    111111  23689999999986532  1 11212   22222 24 5 7899999997432    


Q ss_pred             HHHHHHHHHHcCCcEEEee
Q 032243           74 YETAKAFADEIGIPFMETS   92 (144)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~S   92 (144)
                      ...+..+....+.++..++
T Consensus       254 ~g~~l~~~~~~~~pi~~ig  272 (432)
T 2v3c_C          254 GGGALSAVAETKAPIKFIG  272 (432)
T ss_dssp             THHHHHHHHHSSCCEEEEC
T ss_pred             hHHHHHHHHHHCCCEEEee
Confidence            1233446666777766553

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=93.51  E-value=0.43  Score=32.84  Aligned_cols=63  Identities=13%  Similarity=0.101  Sum_probs=38.3

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHH---HHhcCCCCcEE-EEEeCCCCC
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI---DRYASDNVNKL-LVGNKCDLT   67 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~---~~~~~~~~p~i-lv~nK~Dl~   67 (144)
                      |+|||+....  .....+..+|.+|+++..+. .++..+..++..+   ........+++ +|+|+.|..
T Consensus       116 iiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~  182 (257)
T 1wcv_1          116 LLDAPPSLSP--LTLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR  182 (257)
T ss_dssp             EEECCSSCCH--HHHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred             EEeCCCCCCH--HHHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence            6899876432  22344567999999998764 3444444444443   32222345664 889999853

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=91.96  E-value=1  Score=30.22  Aligned_cols=61  Identities=8%  Similarity=-0.062  Sum_probs=41.0

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      |+|+|+...  ......+..+|.+++++..+ ..+...+...+..+....  ....-+|+|+.+..
T Consensus       116 iiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~  176 (237)
T 1g3q_A          116 LIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKAG--LAILGFVLNRYGRS  176 (237)
T ss_dssp             EEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHTT--CEEEEEEEEEETSC
T ss_pred             EEECCCCcC--HHHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhCC--CceEEEEEecCCcc
Confidence            678887543  33455678899999999764 456666666666665442  24567889999853

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=91.96  E-value=0.0046  Score=45.58  Aligned_cols=92  Identities=11%  Similarity=0.079  Sum_probs=50.4

Q ss_pred             ceeccchhHHhh--------hhhhhh--cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 032243            2 QWDTAGQERFRT--------ITSSYY--RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV   71 (144)
Q Consensus         2 i~Dt~G~~~~~~--------~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~   71 (144)
                      ++||||......        ....++  +..|.++++++....-.+..+..    +........|+++++||.|......
T Consensus       216 liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~  291 (369)
T 3ec1_A          216 LYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTK  291 (369)
T ss_dssp             EEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEE
T ss_pred             EEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCccccccc
Confidence            789999632211        122222  67899999998743211111110    1111223579999999999864433


Q ss_pred             cCHHHHHHHHHHcCCcEEEeecCCCCC
Q 032243           72 VSYETAKAFADEIGIPFMETSAKDSTN   98 (144)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~   98 (144)
                      . ......+.+..+..+.+.++....+
T Consensus       292 ~-~~~~~~~~~~~g~~l~p~~~~~~~~  317 (369)
T 3ec1_A          292 L-EKADSLYANQLGELLSPPSKRYAAE  317 (369)
T ss_dssp             G-GGHHHHHHHHBTTTBCSSCGGGTTT
T ss_pred             H-HHHHHHHHHhcCCccCCCCchhhhh
Confidence            3 2333345556666666666654433

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=91.64  E-value=1.1  Score=30.70  Aligned_cols=79  Identities=9%  Similarity=-0.022  Sum_probs=48.1

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA   81 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~   81 (144)
                      |+|+|+...  ......+..+|.+|+++..+ ..+...+...+..+....  ....-+|+|+.+....    ......+.
T Consensus       115 iiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~----~~~~~~~~  185 (263)
T 1hyq_A          115 LLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERLG--TKVLGVVVNRITTLGI----EMAKNEIE  185 (263)
T ss_dssp             EEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHHT--CEEEEEEEEEECTTTH----HHHHHHHH
T ss_pred             EEeCCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhcC--CCeeEEEEccCCcccc----cchHHHHH
Confidence            678886543  33345567799999998764 455666666666665542  2456688999985321    13334455


Q ss_pred             HHcCCcEE
Q 032243           82 DEIGIPFM   89 (144)
Q Consensus        82 ~~~~~~~~   89 (144)
                      +..+.+++
T Consensus       186 ~~~~~~~~  193 (263)
T 1hyq_A          186 AILEAKVI  193 (263)
T ss_dssp             HHTTSCEE
T ss_pred             HHhCCCeE
Confidence            55666543

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=91.38  E-value=1.2  Score=33.36  Aligned_cols=58  Identities=14%  Similarity=0.104  Sum_probs=36.9

Q ss_pred             CCcEEEEEeCCCCC-------CCcccCHHHH----HHHH----HHcC---CcEEEeec--CCCCCHHHHHHHHHHHHH
Q 032243           54 NVNKLLVGNKCDLT-------ANKVVSYETA----KAFA----DEIG---IPFMETSA--KDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        54 ~~p~ilv~nK~Dl~-------~~~~~~~~~~----~~~~----~~~~---~~~~~~Sa--~~~~~i~~l~~~i~~~~~  111 (144)
                      ..|+++|.||.|+.       .-......+.    ..+.    ...+   -.++.+|+  ..+.|++++.+.+...+.
T Consensus       175 ~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp  252 (413)
T 1tq4_A          175 KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP  252 (413)
T ss_dssp             TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred             CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence            47999999999963       1111222322    2222    1222   26789999  666779999999988764

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=90.31  E-value=0.88  Score=31.32  Aligned_cols=60  Identities=8%  Similarity=-0.018  Sum_probs=40.5

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD   65 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D   65 (144)
                      |+|||+..  .......+..+|.+|+++..+. .+...+..++..+.... ...++.+|+|+.+
T Consensus       149 iiD~pp~~--~~~~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~~-~~~~~~vv~N~~~  208 (267)
T 3k9g_A          149 VIDTNPSL--DVTLKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKLN-LFLPIFLIITRFK  208 (267)
T ss_dssp             EEEECSSC--SHHHHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTTT-CCCCEEEEEEEEC
T ss_pred             EEECcCCc--cHHHHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHHh-ccCCEEEEEeccc
Confidence            57888654  2234555677999999998754 45566666666665543 2467789999994

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=89.71  E-value=0.99  Score=30.40  Aligned_cols=59  Identities=14%  Similarity=0.006  Sum_probs=39.8

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCD   65 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~D   65 (144)
                      |+|||+....  .....+..+|.+++++..+ ..++..+..+...+....  ...+.+|+|+.+
T Consensus       136 iiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~~--~~~~~~v~N~~~  194 (254)
T 3kjh_A          136 VMDMGAGIEH--LTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGDLG--IKKVRYVINKVR  194 (254)
T ss_dssp             EEEECTTCTT--CCHHHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHHHT--CSCEEEEEEEEC
T ss_pred             EEeCCCcccH--HHHHHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHHcC--CccEEEEEeCCC
Confidence            6788875432  3455678899999999874 556666666555444333  245788999998

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=89.27  E-value=0.73  Score=31.41  Aligned_cols=62  Identities=13%  Similarity=0.052  Sum_probs=41.2

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC------CCCcEEEEEeCCCC
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS------DNVNKLLVGNKCDL   66 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------~~~p~ilv~nK~Dl   66 (144)
                      |+|||+...  ......+..+|.+++++..+ ..+...+..++..+.....      ......+|+|+.|.
T Consensus       118 iiD~p~~~~--~~~~~~l~~ad~vi~v~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~  185 (260)
T 3q9l_A          118 VCDSPAGIE--TGALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP  185 (260)
T ss_dssp             EEECCSSSS--HHHHHHHHTCSEEEEEECSS-HHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred             EEcCCCCCC--HHHHHHHHhCCEEEEEecCC-hhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence            678887543  24456677899999999864 5566666666666543221      12467889999884

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=89.20  E-value=0.7  Score=31.87  Aligned_cols=85  Identities=18%  Similarity=0.176  Sum_probs=46.4

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCC----Ccc-c-CH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKL-LVGNKCDLTA----NKV-V-SY   74 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~----~~~-~-~~   74 (144)
                      |+|||+...........+..+|.+|++...+. .+...+...+..+...   ..+++ +|+|+.|...    ... . ..
T Consensus       133 iID~pp~~~~~~~~~~~~~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~~~~~~~  208 (262)
T 2ph1_A          133 LIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQE-LTAVIVEKAINMAEET---NTSVLGLVENMSYFVCPNCGHKSYIFGE  208 (262)
T ss_dssp             EEECCSSSSSHHHHHHHHHCCSEEEEEECSSS-CCHHHHHHHHHHHHTT---TCCEEEEEETTCCEECTTTCCEECTTCC
T ss_pred             EEECcCCCchHHHHHHhhccCCeEEEEecCcc-chHHHHHHHHHHHHhC---CCCEEEEEECCCccCCcccccccccccc
Confidence            67888754211111112236899999987654 3445555555555433   35666 8999987411    110 0 11


Q ss_pred             HHHHHHHHHcCCcEEE
Q 032243           75 ETAKAFADEIGIPFME   90 (144)
Q Consensus        75 ~~~~~~~~~~~~~~~~   90 (144)
                      .....+.+..+.+++.
T Consensus       209 ~~~~~~~~~~g~~~~~  224 (262)
T 2ph1_A          209 GKGESLAKKYNIGFFT  224 (262)
T ss_dssp             CCHHHHHHHTTCSEEE
T ss_pred             cHHHHHHHHcCCCeEE
Confidence            1234456667777664

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=88.77  E-value=0.0063  Score=44.85  Aligned_cols=88  Identities=7%  Similarity=0.034  Sum_probs=46.5

Q ss_pred             ceeccchhHHhh--------hhhhh--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 032243            2 QWDTAGQERFRT--------ITSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV   71 (144)
Q Consensus         2 i~Dt~G~~~~~~--------~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~   71 (144)
                      ++||||......        ....+  ....+.++++++....-.+..+..    +........|+++++||.|......
T Consensus       215 liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~  290 (368)
T 3h2y_A          215 LYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTK  290 (368)
T ss_dssp             EEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEE
T ss_pred             EEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccccccc
Confidence            789999633221        11222  256788999998742211111100    1111223579999999999864433


Q ss_pred             cCHHHHHHHHHHcCCcEEEeecC
Q 032243           72 VSYETAKAFADEIGIPFMETSAK   94 (144)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~Sa~   94 (144)
                      . ......+.+..+..+.+.++.
T Consensus       291 ~-~~~~~~~~~~~g~~l~p~~~~  312 (368)
T 3h2y_A          291 L-EKADELYKNHAGDLLSPPTPE  312 (368)
T ss_dssp             H-HHHHHHHHHHBTTTBCSSCHH
T ss_pred             H-HHHHHHHHHHhCCccCCCchh
Confidence            2 333344455566555555543

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=87.17  E-value=2.7  Score=29.30  Aligned_cols=62  Identities=16%  Similarity=0.177  Sum_probs=35.5

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHH---HHhcCCCCcE-EEEEeCCCC
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI---DRYASDNVNK-LLVGNKCDL   66 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~---~~~~~~~~p~-ilv~nK~Dl   66 (144)
                      |+|||+.....  ....+..+|.+|+++..+. .+...+...+..+   ........++ -+|.|+.|.
T Consensus       159 iiD~pp~~~~~--~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~  224 (298)
T 2oze_A          159 IIDTVPTPSVY--TNNAIVASDYVMIPLQAEE-ESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDT  224 (298)
T ss_dssp             EEEECSSCSHH--HHHHHHHCSEEEEEECGGG-CCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCT
T ss_pred             EEECCCCccHH--HHHHHHHCCeEEEEecCcH-HHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECC
Confidence            57888754322  1233445999999997643 3344444443333   2222234564 488999986

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=86.09  E-value=3  Score=29.97  Aligned_cols=69  Identities=20%  Similarity=0.243  Sum_probs=39.8

Q ss_pred             CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHH
Q 032243           21 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVE  100 (144)
Q Consensus        21 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  100 (144)
                      .+|.+++|++....  .+.+..    +......-...=+|+||.|-...    .-.+..+....+.|+..+.  .|++++
T Consensus       227 ~~d~vllVl~a~~~--~~~l~~----~~~~~~~~~i~GvVltk~d~~~~----~g~~~~~~~~~~~Pi~~i~--~Ge~~~  294 (320)
T 1zu4_A          227 APHEVLLVIDATTG--QNGVIQ----AEEFSKVADVSGIILTKMDSTSK----GGIGLAIKELLNIPIKMIG--VGEKVD  294 (320)
T ss_dssp             CCSEEEEEEEGGGT--HHHHHH----HHHHTTTSCCCEEEEECGGGCSC----TTHHHHHHHHHCCCEEEEE--CSSSTT
T ss_pred             CCceEEEEEECCCc--HHHHHH----HHHHhhcCCCcEEEEeCCCCCCc----hhHHHHHHHHHCcCEEEEe--CCCCcc
Confidence            47899999998732  333332    22222211234578999996322    1245566677888887776  444444


Q ss_pred             H
Q 032243          101 Q  101 (144)
Q Consensus       101 ~  101 (144)
                      +
T Consensus       295 d  295 (320)
T 1zu4_A          295 D  295 (320)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=85.55  E-value=2.3  Score=30.40  Aligned_cols=69  Identities=25%  Similarity=0.227  Sum_probs=40.7

Q ss_pred             CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHH
Q 032243           21 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVE  100 (144)
Q Consensus        21 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  100 (144)
                      ..|.+++|+|....  .+.+.. ...+....   ...-+|+||.|-...    .-.+..+....+.|+..++.  |+.++
T Consensus       222 ~p~~vllVlda~t~--~~~l~~-a~~~~~~~---~i~gvVlTk~D~~~~----gG~~l~~~~~~~~Pi~~i~~--Ge~~~  289 (306)
T 1vma_A          222 APHETLLVIDATTG--QNGLVQ-AKIFKEAV---NVTGIILTKLDGTAK----GGITLAIARELGIPIKFIGV--GEKAE  289 (306)
T ss_dssp             CCSEEEEEEEGGGH--HHHHHH-HHHHHHHS---CCCEEEEECGGGCSC----TTHHHHHHHHHCCCEEEEEC--SSSGG
T ss_pred             CCcEEEEEEECCCC--HHHHHH-HHHHHhcC---CCCEEEEeCCCCccc----hHHHHHHHHHHCCCEEEEeC--CCChh
Confidence            47899999998632  233322 22232221   234677899996322    22366777888999888874  44444


Q ss_pred             H
Q 032243          101 Q  101 (144)
Q Consensus       101 ~  101 (144)
                      +
T Consensus       290 d  290 (306)
T 1vma_A          290 D  290 (306)
T ss_dssp             G
T ss_pred             h
Confidence            3

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=83.91  E-value=1.6  Score=31.50  Aligned_cols=70  Identities=14%  Similarity=0.090  Sum_probs=43.0

Q ss_pred             CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHH
Q 032243           21 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVE  100 (144)
Q Consensus        21 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  100 (144)
                      ..|-.++++|....   .++......+....   ....+++||.|-...    .-.+.......+.|+..++  +|++++
T Consensus       241 ~~de~llvLDa~t~---~~~~~~~~~~~~~~---~it~iilTKlD~~a~----~G~~l~~~~~~~~pi~~i~--~Ge~v~  308 (328)
T 3e70_C          241 KPNLVIFVGDALAG---NAIVEQARQFNEAV---KIDGIILTKLDADAR----GGAALSISYVIDAPILFVG--VGQGYD  308 (328)
T ss_dssp             CCSEEEEEEEGGGT---THHHHHHHHHHHHS---CCCEEEEECGGGCSC----CHHHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred             cCCCCEEEEecHHH---HHHHHHHHHHHHhc---CCCEEEEeCcCCccc----hhHHHHHHHHHCCCEEEEe--CCCCcc
Confidence            47889999996543   23333333343322   345888999995321    2234567777889988888  666665


Q ss_pred             HH
Q 032243          101 QA  102 (144)
Q Consensus       101 ~l  102 (144)
                      ++
T Consensus       309 dl  310 (328)
T 3e70_C          309 DL  310 (328)
T ss_dssp             CE
T ss_pred             cc
Confidence            43

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=83.55  E-value=0.52  Score=35.44  Aligned_cols=64  Identities=9%  Similarity=0.074  Sum_probs=32.1

Q ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH----HHHcCCcEEEeecC
Q 032243           24 GIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF----ADEIGIPFMETSAK   94 (144)
Q Consensus        24 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~   94 (144)
                      +++|+.|....-+..++ .++..+   . ...|+++|.||+|..++.++  ......    ....|++++.+|..
T Consensus       151 ~v~fI~d~~~~l~~~Di-eilk~L---~-~~~~vI~Vi~KtD~Lt~~E~--~~l~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          151 CLYFIAPTGHSLKSLDL-VTMKKL---D-SKVNIIPIIAKADAISKSEL--TKFKIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             EEEEECCCC---CHHHH-HHHHHT---C-SCSEEEEEESCGGGSCHHHH--HHHHHHHHHHHBTTBCCCCCCC--
T ss_pred             EEEEEeCCCCCCCHHHH-HHHHHH---h-hCCCEEEEEcchhccchHHH--HHHHHHHHHHHHHcCCcEEecCCC
Confidence            35666666543322221 222222   2 46899999999998654432  122122    22346777777753

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=83.42  E-value=3.3  Score=29.29  Aligned_cols=68  Identities=21%  Similarity=0.124  Sum_probs=36.7

Q ss_pred             CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHH
Q 032243           21 GAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVE  100 (144)
Q Consensus        21 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  100 (144)
                      ..|.+++|+|....  .+.+ .....+....   ...-+|+||.|....    .-.+..+....+.|+..++  .|++++
T Consensus       210 ~~~~~~lv~~~~~~--~~~~-~~~~~~~~~~---~i~givlnk~d~~~~----~g~~~~~~~~~~~pi~~i~--~g~~~~  277 (295)
T 1ls1_A          210 GPDEVLLVLDAMTG--QEAL-SVARAFDEKV---GVTGLVLTKLDGDAR----GGAALSARHVTGKPIYFAG--VSEKPE  277 (295)
T ss_dssp             CCSEEEEEEEGGGT--HHHH-HHHHHHHHHT---CCCEEEEECGGGCSS----CHHHHHHHHHHCCCEEEEC--------
T ss_pred             CCCEEEEEEeCCCc--HHHH-HHHHHHhhcC---CCCEEEEECCCCCcc----HHHHHHHHHHHCcCEEEEe--CCCCcc
Confidence            57889999997632  2222 2122222211   234678999996422    2345567777889988877  444454

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=82.65  E-value=7.2  Score=29.25  Aligned_cols=79  Identities=16%  Similarity=0.093  Sum_probs=41.7

Q ss_pred             ceeccchhHHhh-hhh-----hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCcccCH
Q 032243            2 QWDTAGQERFRT-ITS-----SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVVSY   74 (144)
Q Consensus         2 i~Dt~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~   74 (144)
                      |+||||...+.. +..     ..+...|.+++|+|......   .......+...    .+ .-+|+||.|.....    
T Consensus       188 IIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~~----l~i~gvVlnK~D~~~~~----  256 (433)
T 2xxa_A          188 LVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNEA----LPLTGVVLTKVDGDARG----  256 (433)
T ss_dssp             EEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHHH----SCCCCEEEECTTSSSCC----
T ss_pred             EEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhcc----CCCeEEEEecCCCCccH----
Confidence            689999643321 111     12447899999999864321   11222222221    33 35789999974321    


Q ss_pred             HHHHHHHHHcCCcEEEe
Q 032243           75 ETAKAFADEIGIPFMET   91 (144)
Q Consensus        75 ~~~~~~~~~~~~~~~~~   91 (144)
                      ..+..+....+.|+..+
T Consensus       257 g~~l~i~~~~~~Pi~~i  273 (433)
T 2xxa_A          257 GAALSIRHITGKPIKFL  273 (433)
T ss_dssp             THHHHHHHHHCCCEEEE
T ss_pred             HHHHHHHHHHCCCeEEE
Confidence            13334555566654433

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=82.24  E-value=3.2  Score=31.30  Aligned_cols=49  Identities=14%  Similarity=0.195  Sum_probs=33.4

Q ss_pred             Cceeccchh--HHhhhh--------hhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh
Q 032243            1 MQWDTAGQE--RFRTIT--------SSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY   50 (144)
Q Consensus         1 qi~Dt~G~~--~~~~~~--------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~   50 (144)
                      ++||..|.+  +++..+        ..++....+.++|+|.++. +......|...+...
T Consensus        90 ~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~  148 (469)
T 1bif_A           90 EFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN  148 (469)
T ss_dssp             GGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence            379999983  344444        6677778999999999887 344455565555443

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=82.17  E-value=5.1  Score=30.06  Aligned_cols=81  Identities=20%  Similarity=0.135  Sum_probs=44.4

Q ss_pred             ceeccchhHHhh-hhh-----hhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243            2 QWDTAGQERFRT-ITS-----SYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE   75 (144)
Q Consensus         2 i~Dt~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~   75 (144)
                      |+||||...... +..     ..+-..|.+++|+|....   .+.......+....   ...-+|+||.|....    .-
T Consensus       185 IIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~~l---~i~GVIlTKlD~~~~----~g  254 (425)
T 2ffh_A          185 LVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDEKV---GVTGLVLTKLDGDAR----GG  254 (425)
T ss_dssp             EEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHT---CCCEEEEESGGGCSS----CH
T ss_pred             EEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHHHHHHHHHHhcC---CceEEEEeCcCCccc----HH
Confidence            689998643211 111     112258999999997632   22222222232221   235678999996322    12


Q ss_pred             HHHHHHHHcCCcEEEee
Q 032243           76 TAKAFADEIGIPFMETS   92 (144)
Q Consensus        76 ~~~~~~~~~~~~~~~~S   92 (144)
                      .+.......+.|+..+.
T Consensus       255 ~alsi~~~~g~PI~flg  271 (425)
T 2ffh_A          255 AALSARHVTGKPIYFAG  271 (425)
T ss_dssp             HHHHHHHHHCCCEEEEE
T ss_pred             HHHHHHHHHCCCEEEEe
Confidence            34456667788877766

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=81.34  E-value=1.9  Score=30.14  Aligned_cols=30  Identities=20%  Similarity=0.109  Sum_probs=22.3

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCC
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTD   33 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~   33 (144)
                      |+|||+..  .......+..+|.+|+++..+.
T Consensus       108 iiD~p~~~--~~~~~~~l~~aD~viiv~~~~~  137 (286)
T 2xj4_A          108 LIDTPGGD--SAITRMAHGRADLVVTPMNDSF  137 (286)
T ss_dssp             EEECCSSC--CHHHHHHHHTCSEEEEEEESSH
T ss_pred             EEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc
Confidence            67888764  3445666788999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	144
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	2e-33
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	2e-32
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	8e-32
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	4e-30
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	5e-29
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-28
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	3e-28
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	7e-28
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-27
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-27
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-27
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	4e-27
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-26
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-24
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	4e-24
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	1e-23
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-22
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	3e-21
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	4e-21
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	5e-20
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	3e-19
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	8e-19
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	9e-19
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	2e-18
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	2e-18
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	3e-18
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	5e-18
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	1e-17
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	1e-17
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	6e-17
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	9e-17
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	5e-16
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	7e-16
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	2e-15
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	3e-15
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-14
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-14
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	2e-14
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	3e-14
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	4e-14
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	5e-14
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-12
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	1e-11
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-11
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	2e-11
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	3e-11
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	1e-10
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	1e-10
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	7e-10
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	1e-09
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	5e-09
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	8e-09
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	1e-08
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	3e-08
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	0.001

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  113 bits (283), Expect = 2e-33
 Identities = 60/112 (53%), Positives = 85/112 (75%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GN
Sbjct: 60  WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 119

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
           KCD+   + VS E  +  A + GI FMETSAK + NVE AF  +A  IK +M
Sbjct: 120 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  110 bits (276), Expect = 2e-32
 Identities = 58/112 (51%), Positives = 84/112 (75%), Gaps = 1/112 (0%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTIT++YYRGA GII+VYD+TD+ +F N+KQW   ++ +A+D    LLVGN
Sbjct: 56  WDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGN 115

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
           K D+   +VV+ +  +A A E+GIPF+E+SAK+  NV + F  +A  I++++
Sbjct: 116 KSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 166

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 8e-32
 Identities = 56/109 (51%), Positives = 77/109 (70%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR++T +YYR AH ++++YDVT++ SF+N++ WL EI  YA  +V  +L+GN
Sbjct: 61  WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGN 120

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           K D    +VV  E  +  A E G+PFMETSAK   NV+ AF A+A  +K
Sbjct: 121 KVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 169

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  105 bits (263), Expect = 4e-30
 Identities = 88/135 (65%), Positives = 99/135 (73%), Gaps = 4/135 (2%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRTITSSYYRG+HGIIIVYDVTDQESFN VK WL EIDRYA+  V KLLVGN
Sbjct: 60  WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGN 119

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ----P 118
           KCDL   +VV Y+ AK FAD   +PF+ETSA DSTNVE AF+ MA  IK+ M+ Q     
Sbjct: 120 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 179

Query: 119 SMNNARPPTVQIKGQ 133
           +        V +KGQ
Sbjct: 180 TQKKEDKGNVNLKGQ 194

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  101 bits (253), Expect = 5e-29
 Identities = 58/111 (52%), Positives = 78/111 (70%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ DN   LLVGN
Sbjct: 59  WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGN 118

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           KCD+   +VVS E  +  AD +G  F E SAKD+ NV+Q F  +   I ++
Sbjct: 119 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 1e-28
 Identities = 54/108 (50%), Positives = 73/108 (67%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR +T SYYRGA G ++VYD+T + ++N++  WL +     + N   +L+GN
Sbjct: 58  WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGN 117

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL A + V+YE AK FA+E G+ F+E SAK   NVE AF+  A  I
Sbjct: 118 KADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 3e-28
 Identities = 54/115 (46%), Positives = 79/115 (68%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGN
Sbjct: 58  WDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 117

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 117
           K DL   + V  + A+AFA++  + F+ETSA DSTNVE+AF  +   I   ++ +
Sbjct: 118 KSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 172

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.9 bits (245), Expect = 7e-28
 Identities = 45/108 (41%), Positives = 68/108 (62%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR++  SY R +   ++VYD+T+  SF    +W++++      +V  +LVGN
Sbjct: 54  WDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGN 113

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL   + VS E  +  A E+ + F+ETSAK   NV+Q F  +AA++
Sbjct: 114 KTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.7 bits (245), Expect = 1e-27
 Identities = 54/108 (50%), Positives = 79/108 (73%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR+IT SYYR A+ +I+ YD+T +ESF  + +WL EI++YAS+ V  +LVGN
Sbjct: 59  WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGN 118

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           K DL   + VS + A+ F++   + ++ETSAK+S NVE+ F+ +A  +
Sbjct: 119 KIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.5 bits (244), Expect = 1e-27
 Identities = 54/114 (47%), Positives = 77/114 (67%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFR++T SYYRGA G ++VYD+T +E++N +  WL +    AS N+  +L GN
Sbjct: 59  WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGN 118

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116
           K DL A++ V++  A  FA E  + F+ETSA    NVE+AF+  A  I +++ S
Sbjct: 119 KKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES 172

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.8 bits (245), Expect = 2e-27
 Identities = 47/115 (40%), Positives = 75/115 (65%), Gaps = 1/115 (0%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLL 59
             WDTAGQERFR++T++++R A G ++++D+T Q+SF NV+ W++++      +N + +L
Sbjct: 67  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 126

Query: 60  VGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
           +GNK DL   + V+   A+  AD+ GIP+ ETSA    NVE+A   +   I  RM
Sbjct: 127 IGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 181

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.3 bits (241), Expect = 4e-27
 Identities = 56/112 (50%), Positives = 80/112 (71%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  +++S N+  +L+GN
Sbjct: 57  WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGN 116

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
           K DL + + V  E  +AFA E G+ FMETSAK + NVE+AF+  A  I  ++
Sbjct: 117 KSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 168

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.1 bits (238), Expect = 1e-26
 Identities = 45/111 (40%), Positives = 63/111 (56%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQERFRT+T SYYRGA G+I+VYDVT +++F  +  WLNE++ Y + N    ++  
Sbjct: 61  WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVG 120

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
                 N+ V       FA +  + F+E SAK    V+ AF  +   I   
Sbjct: 121 NKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT 171

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.8 bits (224), Expect = 1e-24
 Identities = 42/112 (37%), Positives = 69/112 (61%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLV 60
             WDTAGQERF  +   YYR ++G I+VYD+TD++SF  VK W+ E+ +   + +   +V
Sbjct: 55  AIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIV 114

Query: 61  GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD 112
           GNK DL   + VS + A+++A+ +G     TSAK +  +E+ F+ +   + +
Sbjct: 115 GNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 166

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 89.6 bits (221), Expect = 4e-24
 Identities = 45/112 (40%), Positives = 63/112 (56%), Gaps = 1/112 (0%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASD-NVNKLLVG 61
            DTAGQE +  I  +Y+R   G + V+ +T+ ESF     +  +I R   D NV  LLVG
Sbjct: 57  LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVG 116

Query: 62  NKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           NK DL   + VS E AK  AD+  + ++ETSAK   NV++ F  +   I+ R
Sbjct: 117 NKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.4 bits (218), Expect = 1e-23
 Identities = 42/112 (37%), Positives = 64/112 (57%), Gaps = 1/112 (0%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLL 59
              DTAG E+F ++   Y +   G I+VY + +Q+SF ++K   ++I R    + V  +L
Sbjct: 54  EILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVIL 113

Query: 60  VGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           VGNK DL + + VS    +A A+E G PFMETSAK  T V++ F  +   + 
Sbjct: 114 VGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.1 bits (209), Expect = 2e-22
 Identities = 52/109 (47%), Positives = 73/109 (66%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQER+ ++   YYRGA   I+VYD+T++ESF   K W+ E+ R AS N+   L GN
Sbjct: 60  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 119

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           K DL   + V ++ A+++AD+  + FMETSAK S NV + FMA+A  + 
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.4 bits (202), Expect = 3e-21
 Identities = 46/109 (42%), Positives = 70/109 (64%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAG ERFR +   YYRG+   IIVYD+T +E+F+ +K W+ E+ ++   ++   + GN
Sbjct: 58  WDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGN 117

Query: 63  KCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           KCDLT  + V    AK +AD I   F+ETSAK++ N+ + F+ ++  I 
Sbjct: 118 KCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 166

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.0 bits (201), Expect = 4e-21
 Identities = 45/116 (38%), Positives = 64/116 (55%), Gaps = 3/116 (2%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLV 60
             WDTAGQERF ++   YYR A   ++VYDVT  +SF   + W+ E+   AS ++   LV
Sbjct: 55  EIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALV 114

Query: 61  GNKCDLT---ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           GNK D+      + V+ E  +  A+E G+ F ETSAK   NV   F+ +   I  +
Sbjct: 115 GNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPLK 170

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.9 bits (193), Expect = 5e-20
 Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 2/112 (1%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLL 59
              DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R    D+V  +L
Sbjct: 54  DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVL 113

Query: 60  VGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           VGNKCD  A + V    A+  A   GIP++ETSAK    VE AF  +   I+
Sbjct: 114 VGNKCD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.4 bits (189), Expect = 3e-19
 Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 13/121 (10%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           WDTAGQE +  +    Y      +I + +    SF NV+       R+   N   +LVG 
Sbjct: 58  WDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGT 117

Query: 63  KCDLTANKVVS------------YETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAAS 109
           K DL  +K               Y    A A EIG + ++E SA     ++  F     +
Sbjct: 118 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 177

Query: 110 I 110
           +
Sbjct: 178 V 178

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (185), Expect = 8e-19
 Identities = 44/113 (38%), Positives = 68/113 (60%), Gaps = 6/113 (5%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKL 58
           WDTAGQERFR++ + +YRG+   ++ + V D +SF N+  W  E   YA     ++   +
Sbjct: 60  WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 119

Query: 59  LVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASI 110
           ++GNK D++  + VS E A+A+  + G  P+ ETSAKD+TNV  AF      +
Sbjct: 120 ILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 75.8 bits (185), Expect = 9e-19
 Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 4/113 (3%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVG 61
           WD  GQ++ R +   YY G  G+I V D  D++  +  +Q L+ I       +   L+  
Sbjct: 61  WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA 120

Query: 62  NKCDLTANKV---VSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NK DL        +  +       +       + A     + +    + ++ K
Sbjct: 121 NKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYK 173

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.0 bits (183), Expect = 2e-18
 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 13/123 (10%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLV 60
             +DTAGQE +  +    Y      +I + V +  SF NVK+      +  + NV  LL+
Sbjct: 60  GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLI 119

Query: 61  GNKCDLTANKV------------VSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMA 107
           G + DL  +              +  E  +  A EIG   ++E SA     ++  F    
Sbjct: 120 GTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 179

Query: 108 ASI 110
            +I
Sbjct: 180 IAI 182

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (182), Expect = 2e-18
 Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 2/113 (1%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLL 59
              DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +L
Sbjct: 54  EILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMIL 113

Query: 60  VGNKCDLTANKVVSYETAKAFADEI-GIPFMETSAKDSTNVEQAFMAMAASIK 111
           VGNKCDL   +VV  E  +  A +     F+E+SAK   NV + F  +   I 
Sbjct: 114 VGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.3 bits (181), Expect = 3e-18
 Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 1/115 (0%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLL 59
              DTAGQE F  +   Y R  HG ++V+ + D++SFN V +   +I R    D+   +L
Sbjct: 57  DILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVL 116

Query: 60  VGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM 114
           VGNK DL + + V    A AF     + + E SAK   NV++AF  +  +++   
Sbjct: 117 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 171

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.9 bits (180), Expect = 5e-18
 Identities = 45/110 (40%), Positives = 71/110 (64%), Gaps = 5/110 (4%)

Query: 3   WDTAGQERF-RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLV 60
           WDTAGQERF +++   YYR  H ++ VYD+T+  SF+++  W+ E  ++  ++++ ++LV
Sbjct: 56  WDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILV 115

Query: 61  GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDST---NVEQAFMAMA 107
           GNKCDL +   V  + A+ FAD   +P  ETSAK+     +VE  FM +A
Sbjct: 116 GNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.1 bits (178), Expect = 1e-17
 Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 1/112 (0%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLL 59
              DTAGQE F  +   Y R   G ++V+ VTD+ SF  + ++  +I R    D    +L
Sbjct: 56  DILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMIL 115

Query: 60  VGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           +GNK DL   + V+ E  +  A ++ + +ME SAK   NV+QAF  +   I+
Sbjct: 116 IGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR 167

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 72.7 bits (177), Expect = 1e-17
 Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 4/115 (3%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVG 61
           WD  GQ   R     YY     +I V D TD++  +   + L+ + +     +   L+  
Sbjct: 66  WDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFA 125

Query: 62  NKCDLTANKVVS---YETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           NK D       S    E       +     + +SA     + +    +   IK+ 
Sbjct: 126 NKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 180

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (173), Expect = 6e-17
 Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 2/118 (1%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK--L 58
              DT G  +F  +        H  I+VY +T ++S   +K    +I     D  +   +
Sbjct: 53  QITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIM 112

Query: 59  LVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS 116
           LVGNKCD + ++ V    A+A A      FMETSAK + NV++ F  +    K R  S
Sbjct: 113 LVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRRTVS 170

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (173), Expect = 9e-17
 Identities = 28/130 (21%), Positives = 50/130 (38%), Gaps = 13/130 (10%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGN 62
           +DTAGQE +  +    Y      ++ + V    SF NVK+       +       LLVG 
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115

Query: 63  KCDLTANKVV------------SYETAKAFADEI-GIPFMETSAKDSTNVEQAFMAMAAS 109
           + DL  +               + ETA+  A ++  + ++E SA     ++  F     +
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILA 175

Query: 110 IKDRMASQPS 119
             +    + S
Sbjct: 176 ALEPPEPKKS 185

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.5 bits (166), Expect = 5e-16
 Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 2/115 (1%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK-LL 59
              DTAGQE F  +   Y R   G +IVY VTD+ SF +V ++   I R         +L
Sbjct: 55  DVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMIL 114

Query: 60  VGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDST-NVEQAFMAMAASIKDR 113
           V NK DL   + V+ +  K  A +  IP++ETSAKD   NV++ F  +   I+ +
Sbjct: 115 VANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 169

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.2 bits (165), Expect = 7e-16
 Identities = 41/110 (37%), Positives = 57/110 (51%), Gaps = 1/110 (0%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLV 60
           M WDTAGQE F  IT +YYRGA   ++V+  TD+ESF  +  W  E       ++   LV
Sbjct: 54  MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSW-REKVVAEVGDIPTALV 112

Query: 61  GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
            NK DL  +  +  E A+  A  + + F  TS K+  NV + F  +A   
Sbjct: 113 QNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.0 bits (162), Expect = 2e-15
 Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 13/123 (10%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLV 60
             WDTAG E +  +    Y     I++ + +   +S  N+ +      ++   NV  +LV
Sbjct: 53  ALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILV 112

Query: 61  GNKCDLTANKVV------------SYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMA 107
           GNK DL  ++                E  +  A+ IG   +ME SAK    V + F    
Sbjct: 113 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMAT 172

Query: 108 ASI 110
            + 
Sbjct: 173 RAA 175

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.6 bits (161), Expect = 3e-15
 Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 14/127 (11%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLV 60
             WDT+G   +  +    Y  +  ++I +D++  E+ ++V +      +    N   LLV
Sbjct: 53  SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLV 112

Query: 61  GNKCDLTAN------------KVVSYETAKAFADEIGI-PFMETSAKDSTN-VEQAFMAM 106
           G K DL  +              VSY+     A +IG   ++E SA  S N V   F   
Sbjct: 113 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 172

Query: 107 AASIKDR 113
             +  ++
Sbjct: 173 TLACVNK 179

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 64.7 bits (156), Expect = 1e-14
 Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 4/114 (3%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLV 60
             WD  GQ++ R +   Y++   G+I V D  D+E  N  ++ L  +          LLV
Sbjct: 47  TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLV 106

Query: 61  GNKCDLTANKV----VSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
                   N +    ++ +               T A     + +    ++  +
Sbjct: 107 FANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 64.6 bits (156), Expect = 2e-14
 Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 4/114 (3%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLL 59
             WD  GQ + R    SY+     +I V D  D++ F    Q L E+        V  L+
Sbjct: 63  NVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLI 122

Query: 60  VGNKCDLT---ANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
             NK DL        ++         +        SA     V+     +  ++
Sbjct: 123 FANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.7 bits (156), Expect = 2e-14
 Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 4/124 (3%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKL 58
           WDTAGQERF+++  ++YRGA   ++V+DVT   +F  +  W +E    AS    +N   +
Sbjct: 56  WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 115

Query: 59  LVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQP 118
           ++GNK DL   +V +         +  IP+ ETSAK++ NVEQAF  +A +   +     
Sbjct: 116 VLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVE 175

Query: 119 SMNN 122
             N 
Sbjct: 176 LYNE 179

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.9 bits (154), Expect = 3e-14
 Identities = 46/117 (39%), Positives = 72/117 (61%), Gaps = 6/117 (5%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNK----L 58
           WDTAGQERF+++  ++YRGA   ++VYDVT+  SF N+K W +E   +A+ N  +    +
Sbjct: 57  WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFV 116

Query: 59  LVGNKCDLTANKVVSYETA-KAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIKDR 113
           ++GNK D   +K +  E + +  A  +G IP   TSAK++ NV+ AF  +A S   +
Sbjct: 117 ILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 173

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 4e-14
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 2/115 (1%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLN-EIDRYASDNVNKLL 59
           M+      +        + R   G ++VYD+TD+ SF  V    N   +     NV  +L
Sbjct: 52  MEILDTAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLIL 111

Query: 60  VGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDST-NVEQAFMAMAASIKDR 113
           VGNK DL  ++ VS E  +  A E+   F E SA     N+ + F  +   ++ R
Sbjct: 112 VGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 166

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 5e-14
 Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 4/113 (3%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNE-IDRYASDNVNKLLVG 61
           WD  GQE  R+  ++YY     +I+V D TD+E  +  ++ L + +          L+  
Sbjct: 64  WDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFA 123

Query: 62  NKCDLTANKV---VSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NK D+        +S         +         A     + Q    M + +K
Sbjct: 124 NKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 176

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 58.5 bits (140), Expect = 3e-12
 Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 4/115 (3%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
           WD  GQ+  R+   +Y+    G+I V D  D++   + ++ L  +           L+  
Sbjct: 51  WDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFA 110

Query: 62  NKCDLTANKVVSYETAKAFADEI---GIPFMETSAKDSTNVEQAFMAMAASIKDR 113
           NK DL      +        D I          SA    ++      +   I  R
Sbjct: 111 NKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 1e-11
 Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWL-NEIDRYASDNVNKLL 59
              DTAGQ+ +     +Y    +G I+VY VT  +SF  +K      +D      +  +L
Sbjct: 55  QLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIML 114

Query: 60  VGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           VGNK DL   +V+SYE  KA A+     F+E+SAK++      F  +    +
Sbjct: 115 VGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE 166

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 2e-11
 Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 3/110 (2%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLV 60
             WDTAGQE+F  +   YY  A   II++DVT + ++ NV  W  +      +N+  +L 
Sbjct: 55  NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVCENIPIVLC 113

Query: 61  GNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASI 110
           GNK D+   KV     +  F  +  + + + SAK + N E+ F+ +A  +
Sbjct: 114 GNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 2e-11
 Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 1/118 (0%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLL 59
           M +D   Q+  R +           +IVY VTD+ SF    +   ++ R   +D+V  +L
Sbjct: 51  MVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIIL 110

Query: 60  VGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 117
           VGNK DL  ++ VS +  +A A      F+ETSA    NV+  F  +   I+ R  S+
Sbjct: 111 VGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSK 168

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.5 bits (135), Expect = 3e-11
 Identities = 22/147 (14%), Positives = 40/147 (27%), Gaps = 37/147 (25%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES-----------FNNVKQWLNEIDR 49
              D  GQ   R      +     I+ +  +++ +              +   +   I  
Sbjct: 48  RMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY 107

Query: 50  YASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFM-------------------- 89
               N + +L  NK DL   K++       F +  G                        
Sbjct: 108 PWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSD 167

Query: 90  ------ETSAKDSTNVEQAFMAMAASI 110
                  T A D+ N+   F A+  +I
Sbjct: 168 KIIYSHFTCATDTENIRFVFAAVKDTI 194

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 1e-10
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 1/97 (1%)

Query: 18  YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYET 76
             +     +IVY +TD+ SF    +   ++ R    +++  +LVGNK DL   + VS   
Sbjct: 74  CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSE 133

Query: 77  AKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
            +A A      F+ETSA    NV++ F  +   ++ R
Sbjct: 134 GRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 170

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.9 bits (131), Expect = 1e-10
 Identities = 23/148 (15%), Positives = 40/148 (27%), Gaps = 38/148 (25%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY---------- 50
              D  GQ   R      +     I+ +   ++ +      +  N +             
Sbjct: 47  KMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN 106

Query: 51  -ASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFM-------------------- 89
               NV+ +L  NK DL   KV        F +  G P                      
Sbjct: 107 RVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQ 166

Query: 90  -------ETSAKDSTNVEQAFMAMAASI 110
                   T+A ++ N+   F  +  +I
Sbjct: 167 QRPLYHHFTTAINTENIRLVFRDVKDTI 194

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 7e-10
 Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 4/117 (3%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLL 59
             WD  G    R     YY     +I V D  D++     K  L  +           ++
Sbjct: 52  QVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVV 111

Query: 60  VGNKCDLTANKVVS---YETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR 113
             NK D+      S            +      +TSA   T +++A   +  ++K R
Sbjct: 112 FANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 168

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.3 bits (124), Expect = 1e-09
 Identities = 24/147 (16%), Positives = 42/147 (28%), Gaps = 37/147 (25%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-----------WLNEIDR 49
             +D  GQ   R      + G   II    ++D +      +           + +  + 
Sbjct: 45  KMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN 104

Query: 50  YASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG------------------------ 85
               + + +L  NK DL   K+        + +  G                        
Sbjct: 105 KWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDT 164

Query: 86  --IPFMETSAKDSTNVEQAFMAMAASI 110
             I    T A D+ NV+  F A+   I
Sbjct: 165 KEIYTHFTCATDTKNVQFVFDAVTDVI 191

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 5e-09
 Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 18  YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-----SDNVNKLLVGNKCDLTANKVV 72
           +   A  +I V+ + D+ SF  V +   ++            +  +   ++   ++ +VV
Sbjct: 67  FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVV 126

Query: 73  SYETAKAFADEI-GIPFMETSAKDSTNVEQAFMAMAASIKDRMASQ 117
               A+A   ++    + ET A    NV++ F  +A  +      Q
Sbjct: 127 GDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQ 172

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.3 bits (116), Expect = 8e-09
 Identities = 16/118 (13%), Positives = 40/118 (33%), Gaps = 11/118 (9%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLV 60
             +D  G  + R +   Y+   +GI+ + D  D E F+  +  L+ +   A       ++
Sbjct: 47  TTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVI 106

Query: 61  GNKCD-----------LTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMA 107
                            +A  +++   ++    +  +     S        +AF  ++
Sbjct: 107 LGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 164

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 1e-08
 Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 4/113 (3%)

Query: 3   WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVG 61
           WD  GQ RFR++   Y RG   I+ + D  DQE     K  L+ +        +  L++G
Sbjct: 52  WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLG 111

Query: 62  NKCDLTA---NKVVSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIK 111
           NK DL      K +  +   +   +  I     S K+  N++     +    K
Sbjct: 112 NKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 164

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 47.8 bits (112), Expect = 3e-08
 Identities = 23/126 (18%), Positives = 40/126 (31%), Gaps = 16/126 (12%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLL 59
             +D  G  + R +  +Y    +GI+ + D  D E     K+ L+ +    +  NV  L+
Sbjct: 60  TTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILI 119

Query: 60  VGNKCDLTANKVVS---------------YETAKAFADEIGIPFMETSAKDSTNVEQAFM 104
           +GNK D                          +    +   +     S        + F 
Sbjct: 120 LGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 179

Query: 105 AMAASI 110
            MA  I
Sbjct: 180 WMAQYI 185

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 5/101 (4%)

Query: 1   MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESF-NNVKQWLNEI---DRYASDNVN 56
           +      +     +   +   A  ++ V D    +    +V ++L ++        ++ +
Sbjct: 51  LIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPS 110

Query: 57  KLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDST 97
            L+  NK D+   K       +    E+    +  SA  ST
Sbjct: 111 LLIACNKQDIAMAKSAK-LIQQQLEKELNTLRVTRSAAPST 150

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	144
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.94
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.93
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.93
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.92
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.92
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.92
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.92
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.91
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.91
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.91
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.9
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.9
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.9
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.89
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.89
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.88
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.86
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.85
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.84
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.84
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.84
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.83
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.83
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.74
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.68
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.65
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.61
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.6
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.59
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.56
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.54
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.5
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.5
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.48
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.47
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.46
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.45
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.44
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.44
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.41
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.41
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.34
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.32
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.28
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.27
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.24
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.2
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.01
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.95
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.88
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.86
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.75
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.73
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.7
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.67
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.66
d1nrjb_	209	Signal recognition particle receptor beta-subunit	98.66
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.52
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.47
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.45
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.4
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.19
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	97.97
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.85
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.6
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.87
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	96.63
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	96.21
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	95.43
d1okkd2	207	GTPase domain of the signal recognition particle r	93.54
d2qy9a2	211	GTPase domain of the signal recognition particle r	93.11
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	92.76
d1vmaa2	213	GTPase domain of the signal recognition particle r	92.58
d1j8yf2	211	GTPase domain of the signal sequence recognition p	92.21
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	91.68
d1ls1a2	207	GTPase domain of the signal sequence recognition p	90.79
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	83.53
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	80.18

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.3e-27  Score=156.73  Aligned_cols=116  Identities=32%  Similarity=0.395  Sum_probs=98.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||+|+++|..++..++.++|++++|||++++.+|+.+..|+..+..... ...|+++|+||.|+...+.++..++..
T Consensus        51 ~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~  130 (168)
T d2gjsa1          51 MVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRA  130 (168)
T ss_dssp             EEEECC-------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             eeeecccccccceecccchhhhhhhceeccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHH
Confidence            4899999999999999999999999999999999999999999999876643 468999999999998777788899999


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS  116 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~  116 (144)
                      +++..+++++++||++|.|++++|+.|++.++.++.+
T Consensus       131 ~~~~~~~~~~e~Sak~~~~v~~~f~~l~~~i~~~~~~  167 (168)
T d2gjsa1         131 CAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDS  167 (168)
T ss_dssp             HHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCEEEEEeCCCCcCHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999988766543

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.9e-26  Score=154.29  Aligned_cols=111  Identities=25%  Similarity=0.341  Sum_probs=96.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC------------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA------------   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~------------   68 (144)
                      +||||+|+++|..++..++.++|++++|||+++++||+.+..|+.........+.|+++|+||.|+..            
T Consensus        54 ~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~  133 (191)
T d2ngra_          54 GLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNK  133 (191)
T ss_dssp             EEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTT
T ss_pred             eccccccchhhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcc
Confidence            48999999999999999999999999999999999999998766655555445799999999999853            


Q ss_pred             CcccCHHHHHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           69 NKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        69 ~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ...+..+++..++...+ .+++++||++|.|++++|+.++..+.
T Consensus       134 ~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~V~e~f~~l~~~~~  177 (191)
T d2ngra_         134 QKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL  177 (191)
T ss_dssp             CCCCCHHHHHHHHHHTTCSCEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             cccccHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHh
Confidence            23477888888998865 79999999999999999999988764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=2.8e-26  Score=151.56  Aligned_cols=112  Identities=52%  Similarity=0.913  Sum_probs=103.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||||+++|..++..+++++|++|+|||++++.++..+..|+..+........|+++++||.|+.....+..+++..+
T Consensus        57 ~~wDt~G~e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~  136 (169)
T d3raba_          57 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQL  136 (169)
T ss_dssp             EEEEECCSGGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EEEECCCchhhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHH
Confidence            48999999999999999999999999999999999999999998888777666799999999999977777888899999


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      ++..+++++++||++|.|++++|++|++.+.+
T Consensus       137 ~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~e  168 (169)
T d3raba_         137 ADHLGFEFFEASAKDNINVKQTFERLVDVICE  168 (169)
T ss_dssp             HHHHTCEEEECBTTTTBSHHHHHHHHHHHHHT
T ss_pred             HHHcCCEEEEecCCCCcCHHHHHHHHHHHHhh
Confidence            99999999999999999999999999998764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.2e-26  Score=149.78  Aligned_cols=113  Identities=48%  Similarity=0.814  Sum_probs=103.8

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||||+++|..+++.+++++|++++|||++++.++..+..|+..+........|+++|+||.|+.....+..+++..+
T Consensus        57 ~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~  136 (171)
T d2ew1a1          57 QIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEF  136 (171)
T ss_dssp             EEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHH
T ss_pred             EEEECCCchhhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHH
Confidence            47999999999999999999999999999999999999999999998777666799999999999977777888899999


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      ++..+++++++||++|.|++++|.+|+..+...
T Consensus       137 ~~~~~~~~~~~SAktg~gV~e~f~~l~~~l~~~  169 (171)
T d2ew1a1         137 SEAQDMYYLETSAKESDNVEKLFLDLACRLISE  169 (171)
T ss_dssp             HHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHhCCCEEEEEccCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999998887653

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.6e-25  Score=147.98  Aligned_cols=112  Identities=38%  Similarity=0.598  Sum_probs=103.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++||++|++++..+++.+++++|++++|||++++.+|+.+..|+..+.+.. ....|+++++||+|+...+.++.+++..
T Consensus        55 ~i~d~~g~~~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~  134 (169)
T d1x1ra1          55 DVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE  134 (169)
T ss_dssp             EEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHH
T ss_pred             cccccccccccccchhhhhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHH
Confidence            489999999999999999999999999999999999999999999987664 3578999999999998888888999999


Q ss_pred             HHHHcCCcEEEeecCCCC-CHHHHHHHHHHHHHH
Q 032243           80 FADEIGIPFMETSAKDST-NVEQAFMAMAASIKD  112 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~-~i~~l~~~i~~~~~~  112 (144)
                      +++.++++++++||+++. ||+++|..|++.+.+
T Consensus       135 ~~~~~~~~~~e~Sak~~~~nV~~~F~~l~~~i~~  168 (169)
T d1x1ra1         135 MATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ  168 (169)
T ss_dssp             HHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             HHHHcCCEEEEEcCCCCCcCHHHHHHHHHHHHHh
Confidence            999999999999999875 999999999998865

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.3e-26  Score=149.90  Aligned_cols=112  Identities=38%  Similarity=0.745  Sum_probs=96.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++||++|++++..+++.++.++|++++|||++++.||+.+..|+..+........|++|++||.|+...+.++.+++..+
T Consensus        55 ~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~  134 (167)
T d1z08a1          55 AIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESY  134 (167)
T ss_dssp             EEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             eeeccCCcceecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHH
Confidence            48999999999999999999999999999999999999999999888766656789999999999987778889999999


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      ++..+++++++||++|.|++++|++|++.+.+
T Consensus       135 a~~~~~~~~e~Sak~~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         135 AESVGAKHYHTSAKQNKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             HHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred             HHHcCCeEEEEecCCCcCHHHHHHHHHHHHhh
Confidence            99999999999999999999999999988763

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.8e-25  Score=149.66  Aligned_cols=115  Identities=42%  Similarity=0.769  Sum_probs=103.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||+|+++|..++..+++++|++|+|||++++.+|+.+..|+..+.... ....|+++|+||.|+...+.+..+++..
T Consensus        67 ~i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~  146 (186)
T d2f7sa1          67 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARE  146 (186)
T ss_dssp             EEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             ccccCCcchhhHHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHH
Confidence            479999999999999999999999999999999999999999988775543 2468899999999998777888999999


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA  115 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~  115 (144)
                      +++.++++++++||++|.|++++|++|++.+.++..
T Consensus       147 ~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~~k~~  182 (186)
T d2f7sa1         147 LADKYGIPYFETSAATGQNVEKAVETLLDLIMKRME  182 (186)
T ss_dssp             HHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999876543

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.4e-25  Score=147.63  Aligned_cols=114  Identities=34%  Similarity=0.572  Sum_probs=103.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||+|+++|..++..+++++|++++|||++++.+|+.+..|+..+.... ....|+++|+||.|+...+.+..+++..
T Consensus        57 ~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~  136 (173)
T d2fn4a1          57 DILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA  136 (173)
T ss_dssp             EEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             eccccccccccccccchhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhH
Confidence            479999999999999999999999999999999999999999999886643 3578999999999997666777889999


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      +++..+++++++||++|.|++++|+.|++.+.+..
T Consensus       137 ~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~k~~  171 (173)
T d2fn4a1         137 FGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ  171 (173)
T ss_dssp             HHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             HHHhcCCEEEEEeCCCCcCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999987643

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.4e-25  Score=146.79  Aligned_cols=116  Identities=47%  Similarity=0.780  Sum_probs=106.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||+|++++..+++.++.++|++++|||.+++.+|..+..|+..+........|+++++||.|+..........+..+
T Consensus        57 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~  136 (174)
T d2bmea1          57 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRF  136 (174)
T ss_dssp             EEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EEEECCCchhhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHH
Confidence            48999999999999999999999999999999999999999999998887767899999999999977777778888899


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS  116 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~  116 (144)
                      +...+++++++||++|.|++++|+++.+.+.++..+
T Consensus       137 ~~~~~~~~~e~Sak~~~gi~e~f~~l~~~i~~~~~~  172 (174)
T d2bmea1         137 AQENELMFLETSALTGENVEEAFVQCARKILNKIES  172 (174)
T ss_dssp             HHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHS
T ss_pred             HHhCCCEEEEeeCCCCcCHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999998876544

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.4e-25  Score=147.51  Aligned_cols=110  Identities=36%  Similarity=0.639  Sum_probs=101.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||+|++++..++..+++++|++++|||++++.+|+.+..|+..+..... +.|+++|+||+|+...+.+..+++..+
T Consensus        54 ~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~iilVgnK~Dl~~~~~v~~~~~~~~  132 (164)
T d1z2aa1          54 MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDSCIKNEEAEGL  132 (164)
T ss_dssp             EEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC-SCCEEEEEECGGGGGGCSSCHHHHHHH
T ss_pred             eeeccCCccchhhhhhhhhccCceEEEEEeccchhhhhhcccccccccccCC-CceEEEeeccCCcccceeeeehhhHHH
Confidence            4899999999999999999999999999999999999999999999877654 589999999999977777888899999


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ++.++++++++||++|.|++++|+.|++.+.
T Consensus       133 ~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~l  163 (164)
T d1z2aa1         133 AKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL  163 (164)
T ss_dssp             HHHHTCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred             HHHcCCEEEEeccCCCcCHHHHHHHHHHHHh
Confidence            9999999999999999999999999998875

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.1e-25  Score=145.62  Aligned_cols=110  Identities=41%  Similarity=0.698  Sum_probs=102.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++||++|++++..++..++.++|++++|||++++.+|..+..|+..+........|+++|+||.|+.....+..+++..+
T Consensus        52 ~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~  131 (164)
T d1yzqa1          52 QLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERK  131 (164)
T ss_dssp             EEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             eecccCCcchhccchHHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHH
Confidence            48999999999999999999999999999999999999999999998877766899999999999977677778899999


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      ++..+++++++||++|.|++++|++|++.+
T Consensus       132 ~~~~~~~~~e~SAk~g~~v~e~f~~i~~~l  161 (164)
T d1yzqa1         132 AKELNVMFIETSAKAGYNVKQLFRRVAAAL  161 (164)
T ss_dssp             HHHTTCEEEECCTTTCTTHHHHHHHHHHHS
T ss_pred             HHHcCCEEEEecCCCCcCHHHHHHHHHHhh
Confidence            999999999999999999999999999875

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=4.7e-25  Score=145.31  Aligned_cols=110  Identities=42%  Similarity=0.773  Sum_probs=103.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||+|++++..++..++.++|++++|||++++.+|..+..|+..+........|+++|+||.|+...+.+..+++..+
T Consensus        56 ~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~  135 (167)
T d1z0ja1          56 LIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDY  135 (167)
T ss_dssp             EEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             eeeecCCchhhhHHHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHH
Confidence            48999999999999999999999999999999999999999999888877777899999999999977777888999999


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      ++..+++++++||++|.|++++|..|++.+
T Consensus       136 ~~~~~~~~~e~SAk~~~nV~e~f~~l~~~i  165 (167)
T d1z0ja1         136 ADSIHAIFVETSAKNAININELFIEISRRI  165 (167)
T ss_dssp             HHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             HHHcCCEEEEEecCCCCCHHHHHHHHHHhC
Confidence            999999999999999999999999998875

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5e-25  Score=145.04  Aligned_cols=110  Identities=49%  Similarity=0.860  Sum_probs=102.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||+|++++..++..+++++|++++|||+++..+|..+..|+..+........|+++++||.|+.....+..+++..+
T Consensus        56 ~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~  135 (166)
T d1z0fa1          56 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQF  135 (166)
T ss_dssp             EEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EEeccCCchhHHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999887777899999999999977777778899999


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      ++..+++++++||++|.|++++|+.|++.+
T Consensus       136 ~~~~~~~~~e~Saktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         136 AEENGLLFLEASAKTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             HHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            999999999999999999999999998865

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.7e-25  Score=146.15  Aligned_cols=111  Identities=28%  Similarity=0.441  Sum_probs=96.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN-----------   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-----------   69 (144)
                      +||||+|++.|..+++.|+.++|++++|||++++.||+.+..|+........++.|++|++||.|+...           
T Consensus        53 ~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~  132 (177)
T d1kmqa_          53 ALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMK  132 (177)
T ss_dssp             EEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTT
T ss_pred             eccccCccchhcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhh
Confidence            489999999999999999999999999999999999999887665554444457999999999998532           


Q ss_pred             -cccCHHHHHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           70 -KVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        70 -~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                       +.++.+++..+++..+ .++++|||++|.|++++|+.+++.++
T Consensus       133 ~~~v~~~e~~~~a~~~~~~~~~E~SAkt~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         133 QEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL  176 (177)
T ss_dssp             CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence             3466788888999888 58999999999999999999998875

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.9e-25  Score=145.01  Aligned_cols=116  Identities=48%  Similarity=0.805  Sum_probs=106.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++||++|++.+..+++.++.++|++++|||++++.+|+.+..|+..+......+.|++||+||+|+...+.+..+++..+
T Consensus        55 ~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~  134 (173)
T d2a5ja1          55 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAF  134 (173)
T ss_dssp             EEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EeecccCccchhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999887767899999999999877667778889999


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhcc
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMAS  116 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~~  116 (144)
                      ++..+++++++||++|.|++++|..+++.+.+...+
T Consensus       135 a~~~~~~~~e~Sa~tg~~V~e~f~~i~~~i~~~~~~  170 (173)
T d2a5ja1         135 AREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ  170 (173)
T ss_dssp             HHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHT
T ss_pred             HHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999998765443

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.92  E-value=4.5e-25  Score=145.69  Aligned_cols=112  Identities=38%  Similarity=0.600  Sum_probs=99.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++||++|++++..++..+++++|++++|||+++..+|..+..|+..+.... ..+.|+++|+||.|+...+.++.+++..
T Consensus        55 ~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~  134 (168)
T d1u8za_          55 DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN  134 (168)
T ss_dssp             EEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             cccccccccchhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHH
Confidence            489999999999999999999999999999999999999999999987664 3478999999999997777788899999


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      +++..+++++++||++|.|++++|++|++.++.
T Consensus       135 ~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~~  167 (168)
T d1u8za_         135 RADQWNVNYVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             HHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHcCCeEEEEcCCCCcCHHHHHHHHHHHHHC
Confidence            999999999999999999999999999988753

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.6e-25  Score=146.37  Aligned_cols=111  Identities=29%  Similarity=0.378  Sum_probs=96.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC------------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA------------   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~------------   68 (144)
                      ++|||+|+++|..++..++.++|++++|||++++.||+++..|+.........+.|+++|+||.|+.+            
T Consensus        60 ~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~  139 (185)
T d2atxa1          60 GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMK  139 (185)
T ss_dssp             EEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTT
T ss_pred             ecccccccchhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcc
Confidence            48999999999999999999999999999999999999887655555444445789999999999864            


Q ss_pred             CcccCHHHHHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           69 NKVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        69 ~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      .+.++.+++.++++..+ ..+++|||++|.|++++|+.+++.++
T Consensus       140 ~r~v~~~~~~~~a~~~~~~~~~E~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         140 EKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             CCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHc
Confidence            34677888889999887 69999999999999999999998875

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.3e-24  Score=143.96  Aligned_cols=114  Identities=53%  Similarity=0.936  Sum_probs=91.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||||+++|..++..+++.+|++|+|||++++.+|..+..|+..+........|+++++||.|+.........++..+
T Consensus        58 ~i~D~~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~  137 (173)
T d2fu5c1          58 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKL  137 (173)
T ss_dssp             EEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHH
T ss_pred             EEEECCCchhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHH
Confidence            47999999999999999999999999999999999999999999998777777899999999999987777777888889


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      +...+++++++||++|.|++++|++|+..+..+.
T Consensus       138 ~~~~~~~~~e~Sa~~g~gv~e~f~~l~~~i~~k~  171 (173)
T d2fu5c1         138 ALDYGIKFMETSAKANINVENAFFTLARDIKAKM  171 (173)
T ss_dssp             HHHHTCEEEECCC---CCHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999987654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-25  Score=148.83  Aligned_cols=111  Identities=31%  Similarity=0.451  Sum_probs=100.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS--DNVNKLLVGNKCDLTANKVVSYETAK   78 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~   78 (144)
                      ++||++|+++|..++..++.++|++++|||++++++|..+..|+..+.....  ...|+++|+||.|+...+.+..+++.
T Consensus        53 ~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~  132 (171)
T d2erxa1          53 QITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAE  132 (171)
T ss_dssp             EEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHH
T ss_pred             ccccccccccccccccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHH
Confidence            4799999999999999999999999999999999999999999988865432  46899999999999777778888999


Q ss_pred             HHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           79 AFADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        79 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ++++.++++++++||++|.|++++|+.|++.++
T Consensus       133 ~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~~~  165 (171)
T d2erxa1         133 ALARTWKCAFMETSAKLNHNVKELFQELLNLEK  165 (171)
T ss_dssp             HHHHHHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred             HHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999998654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1e-24  Score=144.05  Aligned_cols=110  Identities=47%  Similarity=0.831  Sum_probs=102.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||+|+++|..++..+++++|++++|||.++..+|..+..|+..+......+.|+++|+||.|+...+.++.+++..+
T Consensus        58 ~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~  137 (170)
T d1r2qa_          58 EIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSY  137 (170)
T ss_dssp             EEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred             EeccCCCchhhhhhHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHH
Confidence            47999999999999999999999999999999999999999999998777767899999999999987778889999999


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      ++..+++++++||++|.|++++|+.|++.+
T Consensus       138 ~~~~~~~~~e~SAk~g~~V~e~f~~l~~~i  167 (170)
T d1r2qa_         138 ADDNSLLFMETSAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             HHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred             HHhcCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999998765

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.9e-25  Score=144.74  Aligned_cols=111  Identities=32%  Similarity=0.483  Sum_probs=101.8

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||+|.++|..++..++.++|++++|||++++.+|+.+..|+..+.... ....|+++|+||.|+...+.++.+++..
T Consensus        55 ~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~  134 (167)
T d1xtqa1          55 QLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKA  134 (167)
T ss_dssp             EEEECCCCCTTCCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             eecccccccccccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHH
Confidence            489999999999999999999999999999999999999999998886654 3578999999999997777788999999


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +++.++++++++||++|.|++++|+.|+..+.
T Consensus       135 ~a~~~~~~~~e~Sak~~~~v~~~f~~li~~~~  166 (167)
T d1xtqa1         135 LAESWNAAFLESSAKENQTAVDVFRRIILEAE  166 (167)
T ss_dssp             HHHHHTCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCEEEEEecCCCCCHHHHHHHHHHHhc
Confidence            99999999999999999999999999988764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.8e-24  Score=142.87  Aligned_cols=111  Identities=50%  Similarity=0.897  Sum_probs=95.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||||++++..++..++.++|++++|||++++.++..+..|+..+........|+++++||.|+.....++.+++..+
T Consensus        59 ~i~Dt~G~e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~  138 (170)
T d2g6ba1          59 QMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKL  138 (170)
T ss_dssp             EEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHH
T ss_pred             EEEECCCchhhHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHH
Confidence            48999999999999999999999999999999999999999999888777766789999999999988778888999999


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ++..+++++++||++|.|++++|++|++.++
T Consensus       139 ~~~~~~~~~e~Sak~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         139 AKEYGLPFMETSAKTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             HHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHcCCEEEEEeCCCCcCHHHHHHHHHHHcC
Confidence            9999999999999999999999999998875

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.1e-24  Score=142.38  Aligned_cols=115  Identities=47%  Similarity=0.783  Sum_probs=103.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||+|+++|..++..++..+|++|+|||.+++.+|..+..|+..+........|+++|+||+|+.+...........+
T Consensus        56 ~i~d~~g~e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~  135 (175)
T d2f9la1          56 QIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAF  135 (175)
T ss_dssp             EEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             EecccCCcHHHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHh
Confidence            48999999999999999999999999999999999999999999999888777799999999999976666667777788


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhhc
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRMA  115 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~~  115 (144)
                      ....+.+++++||++|.|++++|+++.+.+.+...
T Consensus       136 ~~~~~~~~~e~Sa~~g~~i~e~f~~l~~~i~~~~~  170 (175)
T d2f9la1         136 AEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVS  170 (175)
T ss_dssp             HHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             hcccCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence            88888999999999999999999999998865443

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2.8e-24  Score=144.82  Aligned_cols=113  Identities=73%  Similarity=1.121  Sum_probs=104.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||||||+++|..+|..+++++|++|+|||++++.++..+..|+..+........|+++++||.|+.....+..++...+
T Consensus        58 ~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~  137 (194)
T d2bcgy1          58 QIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEF  137 (194)
T ss_dssp             EEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHH
T ss_pred             EEEECCCchhhHHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhh
Confidence            48999999999999999999999999999999999999999998888776667899999999999988888888888999


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      +...++.++++||++|.|++++|+.+++.+...
T Consensus       138 ~~~~~~~~~e~SAk~g~gi~e~f~~l~~~i~~~  170 (194)
T d2bcgy1         138 ADANKMPFLETSALDSTNVEDAFLTMARQIKES  170 (194)
T ss_dssp             HHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             hhccCcceEEEecCcCccHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888753

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.2e-24  Score=142.01  Aligned_cols=111  Identities=27%  Similarity=0.469  Sum_probs=97.1

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +|||+|+++|  ++..++.++|++|+|||++++.+|..+..|+..+.... ..+.|+++|+||+|+...+.++.+++..+
T Consensus        60 ~~~~~g~e~~--~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~  137 (172)
T d2g3ya1          60 MWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRAC  137 (172)
T ss_dssp             CTTTTHHHHH--HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred             cccccccccc--cccccccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHH
Confidence            4556788877  56788999999999999999999999999988886543 35799999999999987777888999999


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      +...+++++++||++|.|++++|+.|++.++.++
T Consensus       138 a~~~~~~~~e~Sak~g~~i~~~f~~l~~~i~~rr  171 (172)
T d2g3ya1         138 AVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR  171 (172)
T ss_dssp             HHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             HHHcCCeEEEEeCCCCcCHHHHHHHHHHHHHHcc
Confidence            9999999999999999999999999999887543

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.1e-24  Score=141.23  Aligned_cols=112  Identities=35%  Similarity=0.581  Sum_probs=98.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++||++|++++..++..++..+|++++|||++++.+|+.+..|+..+.... ....|+++|+||.|+...+.+..+++..
T Consensus        56 ~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~  135 (171)
T d2erya1          56 DILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQ  135 (171)
T ss_dssp             EEEECC----CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHH
T ss_pred             ccccccccccccccccccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHH
Confidence            489999999999999999999999999999999999999999998876554 3578999999999998777888899999


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      +++..+++++++||++|.|++++|..|++.+..
T Consensus       136 ~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~k  168 (171)
T d2erya1         136 LARQLKVTYMEASAKIRMNVDQAFHELVRVIRK  168 (171)
T ss_dssp             HHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHHHcCCEEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998864

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2e-24  Score=142.22  Aligned_cols=111  Identities=38%  Similarity=0.629  Sum_probs=101.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++||++|++.+..++..++.++|++++|||++++.+|..+..|+..+..... .+.|++||+||+|+...+.+..+++..
T Consensus        54 ~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~  133 (167)
T d1kaoa_          54 EILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRA  133 (167)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             ccccCCCccccccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHH
Confidence            4799999999999999999999999999999999999999999998876543 478999999999997777778889999


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +++..+++++++||++|.|++++|+.|++.+.
T Consensus       134 ~~~~~~~~~~e~Sak~g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         134 LAEEWGCPFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             HHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCeEEEECCCCCcCHHHHHHHHHHHHc
Confidence            99999999999999999999999999998764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.8e-24  Score=140.86  Aligned_cols=111  Identities=34%  Similarity=0.609  Sum_probs=99.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++||++|++++..++..++.++|++++|||++++.+|+.+..|+..+.... ....|++||+||.|+.....+..+++..
T Consensus        54 ~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~  133 (167)
T d1c1ya_          54 EILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN  133 (167)
T ss_dssp             EEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred             ccccccCcccccccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHH
Confidence            489999999999999999999999999999999999999999999887654 3578999999999997777777888888


Q ss_pred             HHHHc-CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           80 FADEI-GIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        80 ~~~~~-~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +++.. +++++++||++|.|++++|++|++.+.
T Consensus       134 ~~~~~~~~~~~e~Sak~g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         134 LARQWCNCAFLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             HHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             HHHHhCCCEEEEEcCCCCcCHHHHHHHHHHHhc
Confidence            88774 689999999999999999999998763

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.1e-24  Score=140.50  Aligned_cols=113  Identities=35%  Similarity=0.491  Sum_probs=98.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||+|++.+. ....++.++|++++|||++++.+|..+..|+....... ....|+++|+||+|+...+.++.+++..
T Consensus        53 ~i~D~~g~~~~~-~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~  131 (168)
T d2atva1          53 EILDTAGQEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEK  131 (168)
T ss_dssp             EEEECCCCCCCH-HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred             EEeecccccccc-cchhhhcccccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHH
Confidence            589999998774 56678999999999999999999999988876654433 3479999999999997767788999999


Q ss_pred             HHHHcCCcEEEeecCCCC-CHHHHHHHHHHHHHHhh
Q 032243           80 FADEIGIPFMETSAKDST-NVEQAFMAMAASIKDRM  114 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~-~i~~l~~~i~~~~~~~~  114 (144)
                      +++.++++++++||++|. ||+++|..|++.+..++
T Consensus       132 ~a~~~~~~~~e~Saktg~gnV~e~F~~l~~~i~~~r  167 (168)
T d2atva1         132 LATELACAFYECSACTGEGNITEIFYELCREVRRRR  167 (168)
T ss_dssp             HHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCeEEEEccccCCcCHHHHHHHHHHHHHHhc
Confidence            999999999999999998 59999999999887654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.9e-24  Score=142.00  Aligned_cols=108  Identities=33%  Similarity=0.602  Sum_probs=95.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||+|+.++..+++.++.++|++++|||++++.||+.+..|+..+....+ ..|+++|+||.|+......  .+...+
T Consensus        55 ~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~-~~piilvgnK~Dl~~~~~~--~~~~~~  131 (170)
T d1i2ma_          55 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKVK--AKSIVF  131 (170)
T ss_dssp             EEEECTTHHHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHHC-SCCEEEEEECCCCSCSCCT--TTSHHH
T ss_pred             cccccccccccceecchhcccccchhhccccccccccchhHHHHHHHhhccC-CCceeeecchhhhhhhhhh--hHHHHH
Confidence            4899999999999999999999999999999999999999999998877653 6999999999999654433  344567


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +...+++++++||++|.|++++|.+|++.+.
T Consensus       132 ~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~  162 (170)
T d1i2ma_         132 HRKKNLQYYDISAKSNYNFEKPFLWLARKLI  162 (170)
T ss_dssp             HSSCSSEEEEEBTTTTBTTTHHHHHHHHHHH
T ss_pred             HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHc
Confidence            7778899999999999999999999999885

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=3.7e-23  Score=135.90  Aligned_cols=112  Identities=52%  Similarity=0.953  Sum_probs=102.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      ++|||||+++|..++..+++++|++++|||.+++.+++.+..|+..+........|++++++|.|+.. .....+++..+
T Consensus        54 ~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~-~~~~~~~~~~~  132 (166)
T d1g16a_          54 QIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEAL  132 (166)
T ss_dssp             EEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-CCSCHHHHHHH
T ss_pred             EEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhh-hhhhHHHHHHH
Confidence            47999999999999999999999999999999999999999998888887777889999999999854 44568888999


Q ss_pred             HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           81 ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        81 ~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      +...+++++++||++|.|++++|++|++.++++
T Consensus       133 ~~~~~~~~~~~Sa~~~~~v~e~f~~l~~~i~~k  165 (166)
T d1g16a_         133 AKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK  165 (166)
T ss_dssp             HHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             HHhcCCeEEEECCCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999988754

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=4.5e-23  Score=136.45  Aligned_cols=113  Identities=42%  Similarity=0.707  Sum_probs=89.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCc-ccCHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA----SDNVNKLLVGNKCDLTANK-VVSYE   75 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ilv~nK~Dl~~~~-~~~~~   75 (144)
                      ++|||+|++++..++..+++.+|++++|||++++.+|+.+..|+..+....    ...+|+++++||+|+...+ .++..
T Consensus        55 ~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~  134 (175)
T d1ky3a_          55 QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEK  134 (175)
T ss_dssp             EEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHH
T ss_pred             eeeccCCchhhhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHH
Confidence            479999999999999999999999999999999999999999998886543    2368999999999986543 36678


Q ss_pred             HHHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           76 TAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        76 ~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      ++.++++..+ .+++++||++|.|++++|++|++.+.++
T Consensus       135 ~~~~~~~~~~~~~~~e~SA~~g~gv~e~f~~l~~~~l~~  173 (175)
T d1ky3a_         135 SAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ  173 (175)
T ss_dssp             HHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhc
Confidence            8888888886 7999999999999999999999888754

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5e-23  Score=135.32  Aligned_cols=111  Identities=37%  Similarity=0.675  Sum_probs=100.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++||++|++.+...+..++..++++++|||++++.+|+.+..|+..+..... ...|+++|+||.|+. .+.+..+++..
T Consensus        54 ~~~d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~  132 (166)
T d1ctqa_          54 DILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQD  132 (166)
T ss_dssp             EEEEECCCGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCS-CCCSCHHHHHH
T ss_pred             eeeeccCccccccchhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccc-cccccHHHHHH
Confidence            4799999999999999999999999999999999999999999999877654 468999999999985 45667888999


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      +++..+++++++||++|.|++++|..|++.+.+
T Consensus       133 ~~~~~~~~~~e~Sak~g~gi~e~f~~i~~~i~~  165 (166)
T d1ctqa_         133 LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             HHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHhCCeEEEEcCCCCcCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999988763

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=4e-23  Score=136.23  Aligned_cols=110  Identities=41%  Similarity=0.726  Sum_probs=99.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC---CcccCHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA---NKVVSYETA   77 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~---~~~~~~~~~   77 (144)
                      ++|||+|++++..+++.++.++|++++|||++++.+|+.+..|+..+........|+++++||.|+..   .+.+..+++
T Consensus        55 ~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~  134 (170)
T d1ek0a_          55 EIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEG  134 (170)
T ss_dssp             EEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHH
T ss_pred             cccccCCchhHHHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHH
Confidence            48999999999999999999999999999999999999999999888777767789999999999843   356778899


Q ss_pred             HHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           78 KAFADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        78 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      .++++..+++++++||++|.|++++|..|++.+
T Consensus       135 ~~~~~~~~~~~~e~Sak~g~gV~e~F~~i~~~i  167 (170)
T d1ek0a_         135 EKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             HHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             HHHHHHcCCEEEEecCCCCcCHHHHHHHHHHHh
Confidence            999999999999999999999999999987654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=4.2e-23  Score=137.43  Aligned_cols=112  Identities=26%  Similarity=0.443  Sum_probs=96.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCC------------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTA------------   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~------------   68 (144)
                      ++||++|++.+..+++.++.++|++++|||++++.||+.+..|+.........+.|+++||||.|+..            
T Consensus        53 ~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~  132 (179)
T d1m7ba_          53 SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHR  132 (179)
T ss_dssp             EEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTT
T ss_pred             ccccccccccccccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhh
Confidence            48999999999999999999999999999999999999998766665444445799999999999852            


Q ss_pred             CcccCHHHHHHHHHHcCC-cEEEeecCCCC-CHHHHHHHHHHHHHH
Q 032243           69 NKVVSYETAKAFADEIGI-PFMETSAKDST-NVEQAFMAMAASIKD  112 (144)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~-~i~~l~~~i~~~~~~  112 (144)
                      ...++.++...+++..+. ++++|||++|. |++++|+.+...+..
T Consensus       133 ~~~V~~~e~~~~a~~~~~~~y~E~SAk~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         133 QTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             CCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             cCcchHHHHHHHHHHhCCCeEEEEeCCCCCcCHHHHHHHHHHHHhc
Confidence            345778888899988874 89999999998 599999999988764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.1e-22  Score=133.64  Aligned_cols=112  Identities=45%  Similarity=0.796  Sum_probs=100.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      .||||+|++++..+++.++.++|++++|||++++.++..+..|+..+..... ...|+++++||.|.. .+.+...++..
T Consensus        59 ~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~-~~~v~~~~~~~  137 (177)
T d1x3sa1          59 AIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLK  137 (177)
T ss_dssp             EEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHH
T ss_pred             EEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccc-cccccHHHHHH
Confidence            4899999999999999999999999999999999999999999999876543 468889999999974 46677889999


Q ss_pred             HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           80 FADEIGIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        80 ~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      +++..+++++++||++|.|++++|+++++.+.+.
T Consensus       138 ~~~~~~~~~~e~Sa~tg~gv~e~f~~l~~~l~~~  171 (177)
T d1x3sa1         138 FARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT  171 (177)
T ss_dssp             HHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             HHHHCCCEEEEEeCCCCCCHHHHHHHHHHHHccC
Confidence            9999999999999999999999999999988753

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7.9e-23  Score=136.36  Aligned_cols=112  Identities=28%  Similarity=0.420  Sum_probs=93.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN-----------   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-----------   69 (144)
                      ++||++|++.|..++..++.++|++++|||++++.+|+.+..|+.........+.|++||+||.|+...           
T Consensus        56 ~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~  135 (183)
T d1mh1a_          56 GLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKK  135 (183)
T ss_dssp             EEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTT
T ss_pred             EeecccccccchhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhcc
Confidence            489999999999999999999999999999999999999977544443334456899999999997433           


Q ss_pred             -cccCHHHHHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           70 -KVVSYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        70 -~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                       ......+...+++.++ +++++|||++|.|++++|+.|++.++.
T Consensus       136 ~~~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~~~il~  180 (183)
T d1mh1a_         136 LTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC  180 (183)
T ss_dssp             CCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred             ccchhhHHHHHHHHHcCCceEEEcCCCCCcCHHHHHHHHHHHHcC
Confidence             2344567777888877 699999999999999999999998753

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=3.2e-22  Score=131.09  Aligned_cols=107  Identities=43%  Similarity=0.817  Sum_probs=94.0

Q ss_pred             CceeccchhHHhh-hhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCcccCHHHHH
Q 032243            1 MQWDTAGQERFRT-ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-DNVNKLLVGNKCDLTANKVVSYETAK   78 (144)
Q Consensus         1 qi~Dt~G~~~~~~-~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~   78 (144)
                      .+||++|...+.. .++.++.++|++++|||++++.+|+.+..|+..+..... .+.|++|||||.|+.....++.+++.
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~  133 (165)
T d1z06a1          54 QLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQ  133 (165)
T ss_dssp             EEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred             EEEeccCchhhccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHH
Confidence            3799999887655 577899999999999999999999999999999877643 47899999999999777778899999


Q ss_pred             HHHHHcCCcEEEeecCC---CCCHHHHHHHHH
Q 032243           79 AFADEIGIPFMETSAKD---STNVEQAFMAMA  107 (144)
Q Consensus        79 ~~~~~~~~~~~~~Sa~~---~~~i~~l~~~i~  107 (144)
                      ++++.++++++++||++   +.||+++|++|+
T Consensus       134 ~~~~~~~~~~~e~SAkt~~~~~~V~e~F~~lA  165 (165)
T d1z06a1         134 KFADTHSMPLFETSAKNPNDNDHVEAIFMTLA  165 (165)
T ss_dssp             HHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC
T ss_pred             HHHHHCCCEEEEEecccCCcCcCHHHHHHHhC
Confidence            99999999999999987   469999999874

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.1e-21  Score=126.93  Aligned_cols=110  Identities=40%  Similarity=0.730  Sum_probs=97.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEeCCCCCCCcccCHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA----SDNVNKLLVGNKCDLTANKVVSYET   76 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ilv~nK~Dl~~~~~~~~~~   76 (144)
                      ++||++|+.++...+..++..+|++++++|.+++.+|+.+..|+..+....    ....|+++|+||.|+.. +.+..++
T Consensus        58 ~i~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~  136 (174)
T d1wmsa_          58 QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEE  136 (174)
T ss_dssp             EEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHH
T ss_pred             eeecccCcceehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-ccCcHHH
Confidence            489999999999999999999999999999999999999999988875543    23689999999999854 5677888


Q ss_pred             HHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           77 AKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        77 ~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      +..+++..+ ++++++||++|.|++++|+++++.+.
T Consensus       137 ~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~il  172 (174)
T d1wmsa_         137 AQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL  172 (174)
T ss_dssp             HHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCeEEEEcCCCCcCHHHHHHHHHHHHh
Confidence            999998764 79999999999999999999998875

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=8.7e-22  Score=131.29  Aligned_cols=113  Identities=40%  Similarity=0.668  Sum_probs=96.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEeCCCCCCCcccCHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS----DNVNKLLVGNKCDLTANKVVSYET   76 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~   76 (144)
                      ++|||+|+.++..++..++..+|+++++||.++..++..+..|+..+.....    ..+|+++|+||.|+.. ..+..++
T Consensus        54 ~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~  132 (184)
T d1vg8a_          54 QIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKR  132 (184)
T ss_dssp             EEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHH
T ss_pred             EeeecCCcccccccccccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHH
Confidence            4799999999999999999999999999999999999999999988865532    3589999999999865 4455666


Q ss_pred             HHHHHHH-cCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           77 AKAFADE-IGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        77 ~~~~~~~-~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      ...++.. .+++++++||++|.|++++|+++++.+....
T Consensus       133 ~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~i~~~~  171 (184)
T d1vg8a_         133 AQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE  171 (184)
T ss_dssp             HHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCeEEEEcCCCCcCHHHHHHHHHHHHHhcc
Confidence            6667654 4689999999999999999999988876543

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.85  E-value=2e-22  Score=134.18  Aligned_cols=112  Identities=20%  Similarity=0.269  Sum_probs=86.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++|||+|++++..+++.++.++|++++|+|+++..++.+...|+...... ...+.|+++++||+|+.+..  +..+...
T Consensus        64 ~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~~  141 (182)
T d1moza_          64 NVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL--SASEVSK  141 (182)
T ss_dssp             EEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC--CHHHHHH
T ss_pred             EEEecccccccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccccc--CHHHHHH
Confidence            47999999999999999999999999999999999999988887765443 33578999999999985432  2333322


Q ss_pred             H-----HHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           80 F-----ADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        80 ~-----~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      .     +...+++++++||++|+|++++|++|.+.++++.
T Consensus       142 ~~~~~~~~~~~~~~~e~SA~~g~gv~e~~~~l~~~i~~~~  181 (182)
T d1moza_         142 ELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ  181 (182)
T ss_dssp             HTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCCEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            2     1223457899999999999999999999997653

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=9.3e-21  Score=125.62  Aligned_cols=109  Identities=22%  Similarity=0.355  Sum_probs=89.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc---CCCCcEEEEEeCCCCCC--CcccCHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA---SDNVNKLLVGNKCDLTA--NKVVSYE   75 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~--~~~~~~~   75 (144)
                      +||||+|+.++.     |++++|++|+|||++++.||+.+..|+..+....   ...+|+++|+||.|+..  .+.+...
T Consensus        55 ~i~Dt~g~~~~~-----~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~  129 (175)
T d2bmja1          55 LIREEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDA  129 (175)
T ss_dssp             EEEECSSCCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHH
T ss_pred             EEeecccccccc-----cccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHH
Confidence            489999998653     6888999999999999999999998888875543   34679999999988743  4556777


Q ss_pred             HHHHHHHH-cCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           76 TAKAFADE-IGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        76 ~~~~~~~~-~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      ++..++.. .+++++++||++|.|++++|..+++.+....
T Consensus       130 ~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~  169 (175)
T d2bmja1         130 RARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLR  169 (175)
T ss_dssp             HHHHHHHTSTTEEEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCeEEEeCCCCCcCHHHHHHHHHHHHHHhh
Confidence            88778655 4679999999999999999999998876543

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.84  E-value=7e-21  Score=124.59  Aligned_cols=110  Identities=19%  Similarity=0.270  Sum_probs=86.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      .+|||+|+++++..+..++..++++++|||+++..++.+...++..... ....+.|+++|+||.|+.+...+  .+...
T Consensus        49 ~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~  126 (165)
T d1ksha_          49 NIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC--NAIQE  126 (165)
T ss_dssp             EEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHHHH
T ss_pred             eeeecCcchhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCH--HHHHH
Confidence            3899999999999999999999999999999999999888776655533 33357899999999999654433  22222


Q ss_pred             HH--HH---cCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           80 FA--DE---IGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        80 ~~--~~---~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      ..  ..   .+++++++||++|.|++++|++|.+.+..
T Consensus       127 ~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         127 ALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             HTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHHHHHc
Confidence            21  11   23578999999999999999999988753

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.84  E-value=1.1e-21  Score=128.58  Aligned_cols=107  Identities=25%  Similarity=0.363  Sum_probs=86.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++||+||++.+...+..++.++|++++|||+++..+|.....|+..+... .....|+++|+||.|+.....  ..+...
T Consensus        50 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~--~~~i~~  127 (164)
T d1zd9a1          50 KLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD--EKELIE  127 (164)
T ss_dssp             EEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC--HHHHHH
T ss_pred             EEeeccccccccccccccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhh--HHHHHH
Confidence            48999999999999999999999999999999999999988887776443 335799999999999864322  333222


Q ss_pred             HH-----HHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           80 FA-----DEIGIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        80 ~~-----~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      ..     ...+++++++||++|.|++++|++|++.
T Consensus       128 ~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~~  162 (164)
T d1zd9a1         128 KMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH  162 (164)
T ss_dssp             HTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHHc
Confidence            21     1224588999999999999999998874

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.83  E-value=3.6e-21  Score=127.10  Aligned_cols=108  Identities=20%  Similarity=0.335  Sum_probs=86.3

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++||+||++.++..+..++.++|++++|+|+++..++..+..|+...... .....|+++++||+|+.+...  ..+...
T Consensus        59 ~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~--~~~i~~  136 (173)
T d1e0sa_          59 NVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQE  136 (173)
T ss_dssp             EEEEESCCGGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHHH
T ss_pred             EEecCCCcchhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccccc--HHHHHH
Confidence            48999999999999999999999999999999999999998887776443 335799999999999864322  222222


Q ss_pred             H-----HHHcCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           80 F-----ADEIGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        80 ~-----~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      .     +...++.++++||++|+|++++|++|...+
T Consensus       137 ~~~~~~~~~~~~~~~e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         137 KLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             HTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHhc
Confidence            2     122245789999999999999999998754

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.83  E-value=4.3e-21  Score=126.77  Aligned_cols=107  Identities=22%  Similarity=0.250  Sum_probs=85.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++||++|++++..++..++..+|++++|||+++..++.++..|+..+... .....|+++++||.|+.+...  .....+
T Consensus        63 ~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~--~~~~~~  140 (176)
T d1fzqa_          63 NVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAE  140 (176)
T ss_dssp             EEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHH
T ss_pred             eEeeccccccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccccc--HHHHHH
Confidence            47999999999999999999999999999999999999988877766443 334689999999999965432  222222


Q ss_pred             HH-----HHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           80 FA-----DEIGIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        80 ~~-----~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      ..     ....++++++||++|+|++++|++|++.
T Consensus       141 ~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         141 GLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN  175 (176)
T ss_dssp             HTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHhc
Confidence            21     1223579999999999999999999864

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.74  E-value=3.9e-18  Score=110.15  Aligned_cols=107  Identities=20%  Similarity=0.282  Sum_probs=85.6

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKA   79 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~   79 (144)
                      ++||++|...+...+..++.+++++++++|.+++.++..+..|+..+.... ....|+++++||.|+.+...  ..+...
T Consensus        47 ~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~--~~~i~~  124 (160)
T d1r8sa_          47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITD  124 (160)
T ss_dssp             EEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHH
T ss_pred             EEecCCCcccchhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeeccccccccc--HHHHHH
Confidence            479999999999999999999999999999999999998888777765433 34689999999999864332  222221


Q ss_pred             -----HHHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           80 -----FADEIGIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        80 -----~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                           +++..+++++++||++|+|++++|++|.+.
T Consensus       125 ~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~  159 (160)
T d1r8sa_         125 KLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ  159 (160)
T ss_dssp             HTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhc
Confidence                 222335689999999999999999999875

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=4.4e-17  Score=108.36  Aligned_cols=112  Identities=25%  Similarity=0.242  Sum_probs=80.1

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHH-----------HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFN-----------NVKQWLNEIDRYASDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-----------~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   69 (144)
                      ++|||+|+++|+.+|..|+++++++++++|+++..++.           ....|...+........|+++++||.|+...
T Consensus        45 ~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~  124 (195)
T d1svsa1          45 KMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEE  124 (195)
T ss_dssp             EEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHH
T ss_pred             eeeccccccccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhh
Confidence            58999999999999999999999999999998877552           2233444444444457899999999996211


Q ss_pred             ---------------cccCHHHHHHH-----HHH------cCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           70 ---------------KVVSYETAKAF-----ADE------IGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        70 ---------------~~~~~~~~~~~-----~~~------~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                                     ......+....     ...      ..+.+++|||+++.||+++|+.+.+.+.+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         125 KIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             HTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence                           01111222111     111      12357789999999999999999988764

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.65  E-value=1.5e-16  Score=104.46  Aligned_cols=108  Identities=22%  Similarity=0.302  Sum_probs=80.0

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRY-ASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||++|.+.+...+..++..++++++++|.++..++.....+....... .....|+++|+||.|+.....  ..+....
T Consensus        63 ~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~i~~~  140 (177)
T d1zj6a1          63 MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--VAEISQF  140 (177)
T ss_dssp             EEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHHHH
T ss_pred             EeccccccccccchhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCc--HHHHHHH
Confidence            7999999999999999999999999999999999888776554444332 224789999999999854432  2333222


Q ss_pred             HH-----HcCCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           81 AD-----EIGIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        81 ~~-----~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      ..     ..+++++++||++|+|++++|++|.+.++
T Consensus       141 ~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~lk  176 (177)
T d1zj6a1         141 LKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK  176 (177)
T ss_dssp             HTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred             HHHHhhHhcCCEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            21     22357999999999999999999998863

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=1.3e-15  Score=101.41  Aligned_cols=114  Identities=20%  Similarity=0.150  Sum_probs=85.2

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHH-----------HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE-----------SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-----------s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   69 (144)
                      ++||++|+++++..|..++.+++++++++|.++..           .++....|...+........|+++++||.|+...
T Consensus        48 ~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~  127 (200)
T d2bcjq2          48 RMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEE  127 (200)
T ss_dssp             EEEECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHH
T ss_pred             eeccccccccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhh
Confidence            58999999999999999999999999999987754           3455566666666665567999999999997311


Q ss_pred             c----------------ccCHHHHHHHHHHc----------CCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           70 K----------------VVSYETAKAFADEI----------GIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        70 ~----------------~~~~~~~~~~~~~~----------~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      +                .........+....          .+.++++||++|.|+.++|+.|.+.+.+..
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~n  198 (200)
T d2bcjq2         128 KIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  198 (200)
T ss_dssp             HTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHHh
Confidence            1                11222233332211          235789999999999999999999987653

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.60  E-value=1.5e-15  Score=100.14  Aligned_cols=105  Identities=20%  Similarity=0.171  Sum_probs=72.2

Q ss_pred             Cceeccchh--------HHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243            1 MQWDTAGQE--------RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         1 qi~Dt~G~~--------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      .+|||||..        .+......++.++|++++|+|+++.....+ ..|...++.. ..+.|+++|+||+|+....  
T Consensus        56 ~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~-~~~~piilv~NK~Dl~~~~--  131 (178)
T d1wf3a1          56 VFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED-ELVARALKPL-VGKVPILLVGNKLDAAKYP--  131 (178)
T ss_dssp             EEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGG-TTTSCEEEEEECGGGCSSH--
T ss_pred             eecccccccccccccchhcccccccccccccceeeeechhhhhcccc-cchhhheecc-ccchhhhhhhcccccccCH--
Confidence            379999963        233444556789999999999987643322 2333444333 3468999999999985432  


Q ss_pred             CHHHHHHHHHHcC-CcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           73 SYETAKAFADEIG-IPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        73 ~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                       .+....+.+..+ ..++++||++|.|++++++.|.+.+
T Consensus       132 -~~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~~~i~~~l  169 (178)
T d1wf3a1         132 -EEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM  169 (178)
T ss_dssp             -HHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             -HHHHHHHHhhcccCceEEEecCCCCCHHHHHHHHHHhC
Confidence             222333444444 4789999999999999999998754

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=5.3e-15  Score=97.52  Aligned_cols=109  Identities=15%  Similarity=0.117  Sum_probs=73.4

Q ss_pred             CceeccchhHH----h---hhhhhhhcCCCEEEEEEeCCCHH--HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 032243            1 MQWDTAGQERF----R---TITSSYYRGAHGIIIVYDVTDQE--SFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV   71 (144)
Q Consensus         1 qi~Dt~G~~~~----~---~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~   71 (144)
                      ++|||||..+.    .   ......+..++++++++|.....  .+.....++....... ...|+++++||+|+.....
T Consensus        52 ~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~iiv~NK~D~~~~~~  130 (180)
T d1udxa2          52 TLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPAL-LRRPSLVALNKVDLLEEEA  130 (180)
T ss_dssp             EEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHH-HHSCEEEEEECCTTSCHHH
T ss_pred             EEcCCCeeecCchHHHHHHHHHHHHHHhhhhhhhhcccccccccchhhhhhhhhcccccc-chhhhhhhhhhhhhhhHHH
Confidence            48999995321    1   11234467899999999986542  3333333333321111 2479999999999965433


Q ss_pred             cCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           72 VSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                        .+.........+.+++.+||++|.|++++++.|.+.+..
T Consensus       131 --~~~~~~~~~~~~~~~~~iSA~tg~gid~L~~~i~~~l~~  169 (180)
T d1udxa2         131 --VKALADALAREGLAVLPVSALTGAGLPALKEALHALVRS  169 (180)
T ss_dssp             --HHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence              234444555567899999999999999999999988864

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.56  E-value=6.7e-15  Score=95.21  Aligned_cols=109  Identities=19%  Similarity=0.281  Sum_probs=83.9

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHH-HHhcCCCCcEEEEEeCCCCCCCcccCHHHHHH-
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEI-DRYASDNVNKLLVGNKCDLTANKVVSYETAKA-   79 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~-~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-   79 (144)
                      +||++|...+...+..++...+++++++|+.+..++.....++... ........|+++++||.|+.....  ..+... 
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~--~~~i~~~  130 (169)
T d1upta_          53 VWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANS  130 (169)
T ss_dssp             EEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHH
T ss_pred             EeeccccccccccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccccc--HHHHHHH
Confidence            6899999999999999999999999999999887777766644443 333345689999999999965332  222222 


Q ss_pred             ----HHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           80 ----FADEIGIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        80 ----~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                          ++...+++++++||++|.|++++|++|++.+..
T Consensus       131 ~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~~l~~  167 (169)
T d1upta_         131 LGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS  167 (169)
T ss_dssp             HTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence                222334689999999999999999999998754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=6.4e-14  Score=89.95  Aligned_cols=105  Identities=21%  Similarity=0.315  Sum_probs=81.9

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||++|...+..+++.++..++++++++|.++..++.....++....... ....|+++++||.|+...  ....+....
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~--~~~~~i~~~  125 (166)
T d2qtvb1          48 TFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA--VSEAELRSA  125 (166)
T ss_dssp             EEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSC--CCHHHHHHH
T ss_pred             EEeeccchhhhhhHhhhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEecccccccc--CCHHHHHHH
Confidence            79999999999999999999999999999999998888777666664433 347899999999998543  223333222


Q ss_pred             HH------------HcCCcEEEeecCCCCCHHHHHHHHHH
Q 032243           81 AD------------EIGIPFMETSAKDSTNVEQAFMAMAA  108 (144)
Q Consensus        81 ~~------------~~~~~~~~~Sa~~~~~i~~l~~~i~~  108 (144)
                      ..            ...++++++||++|+|++++|++|..
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         126 LGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             HTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             hhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHHHHhC
Confidence            21            11236899999999999999999864

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=3.6e-14  Score=94.51  Aligned_cols=114  Identities=18%  Similarity=0.177  Sum_probs=73.9

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHH----------HHHHHHHHHHHH-HhcCCCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES----------FNNVKQWLNEID-RYASDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~~~-~~~~~~~p~ilv~nK~Dl~~~   69 (144)
                      ++||++|++.++..|..++++++++++++|.++..+          +.....++..+. .....+.|++|++||.|+...
T Consensus        47 ~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~  126 (200)
T d1zcba2          47 KMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEE  126 (200)
T ss_dssp             EEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHH
T ss_pred             eeecccceeeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhh
Confidence            589999999999999999999999999999987543          333344444432 223357999999999997421


Q ss_pred             ----------------cccCHHHHHHHHHHc-----------CCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           70 ----------------KVVSYETAKAFADEI-----------GIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        70 ----------------~~~~~~~~~~~~~~~-----------~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                                      .......+..+....           .+.++++||+++.||+++|+.+.+.+.+..
T Consensus       127 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~~  198 (200)
T d1zcba2         127 KVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN  198 (200)
T ss_dssp             HTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHHh
Confidence                            011123333332221           135678999999999999999999887643

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.50  E-value=1.5e-13  Score=90.60  Aligned_cols=107  Identities=15%  Similarity=0.162  Sum_probs=75.7

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC--HHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETAKA   79 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~   79 (144)
                      ++|++|+.+|.......+..+|++++++|..+...... ...+..+...   +.|+++++||+|+.......  ......
T Consensus        63 ~~d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~-~~~~~~~~~~---~~p~iiv~NKiD~~~~~~~~~~~~~~~~  138 (179)
T d1wb1a4          63 LVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQT-GEHMLILDHF---NIPIIVVITKSDNAGTEEIKRTEMIMKS  138 (179)
T ss_dssp             ECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCBCEEEECTTSSCHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhhhhhccccccccccccccchhh-hhhhhhhhhc---CCcceeccccccccCHHHHHHHHHHHHH
Confidence            68999999999999999999999999999987432222 2222222222   58999999999986532211  111122


Q ss_pred             HHHHc----CCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           80 FADEI----GIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        80 ~~~~~----~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      +.+..    +.+++++||++|.|++++++.|...+.+
T Consensus       139 ~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         139 ILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             HHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence            22221    2489999999999999999999988764

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.48  E-value=4.8e-13  Score=87.90  Aligned_cols=106  Identities=18%  Similarity=0.174  Sum_probs=68.4

Q ss_pred             Cceeccch-----------hH----HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHH----------HHHHHHHHhcCCCC
Q 032243            1 MQWDTAGQ-----------ER----FRTITSSYYRGAHGIIIVYDVTDQESFNNVK----------QWLNEIDRYASDNV   55 (144)
Q Consensus         1 qi~Dt~G~-----------~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~----------~~~~~~~~~~~~~~   55 (144)
                      +||||||.           ++    +.......++.+|++++|+|...........          .++..+..   ...
T Consensus        46 ~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~  122 (184)
T d2cxxa1          46 KIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDI  122 (184)
T ss_dssp             EEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTC
T ss_pred             eecccCCceeccccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCC
Confidence            47999993           22    2233445567899999999987654322111          12222222   258


Q ss_pred             cEEEEEeCCCCCCCcccCHHHHHHHHHHcC-------CcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           56 NKLLVGNKCDLTANKVVSYETAKAFADEIG-------IPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        56 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      |+++|+||+|+.....   .....+.+...       ..++++||++|.|++++++.|.+.+.+
T Consensus       123 p~iiv~NK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         123 PTIVAVNKLDKIKNVQ---EVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CEEEEEECGGGCSCHH---HHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CEEEEEeeeehhhhHH---HHHHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            9999999999764322   12222222222       258899999999999999999998875

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.47  E-value=1.7e-13  Score=89.35  Aligned_cols=107  Identities=16%  Similarity=0.169  Sum_probs=71.5

Q ss_pred             ceeccchh---------HHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc
Q 032243            2 QWDTAGQE---------RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV   72 (144)
Q Consensus         2 i~Dt~G~~---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~   72 (144)
                      +||++|..         .+......++..+|+++++.|.++...... ..++..+...   ..|+++|+||+|+...  .
T Consensus        52 ~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~---~~pviiv~NK~Dl~~~--~  125 (171)
T d1mkya1          52 LVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED-ESLADFLRKS---TVDTILVANKAENLRE--F  125 (171)
T ss_dssp             EEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH-HHHHHHHHHH---TCCEEEEEESCCSHHH--H
T ss_pred             cccccceeeeeccccccccccccccccccCcEEEEeecccccccccc-cccccccccc---cccccccchhhhhhhh--h
Confidence            68888842         233345566789999999999876543332 3444444443   4799999999998531  1


Q ss_pred             CHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHHHHHhh
Q 032243           73 SYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAASIKDRM  114 (144)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~~  114 (144)
                      ..+....+.+....+++++||++|.|+++++++|.+.+.+..
T Consensus       126 ~~~~~~~~~~~~~~~~i~iSAk~g~gid~L~~~i~~~l~e~~  167 (171)
T d1mkya1         126 EREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKG  167 (171)
T ss_dssp             HHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHhCCCCC
Confidence            111222222222357899999999999999999999887543

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.46  E-value=3.3e-13  Score=88.31  Aligned_cols=106  Identities=23%  Similarity=0.298  Sum_probs=77.6

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +||+.|+..+...+..++...+++++++|.++...+.....++..... ....+.|+++++||.|+...  ....+....
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~--~~~~~i~~~  138 (186)
T d1f6ba_          61 TFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA--ISEERLREM  138 (186)
T ss_dssp             EEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--CCHHHHHHH
T ss_pred             cccccchhhhhhHHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCcccc--CCHHHHHHH
Confidence            689999999999999999999999999999999888876654444433 33357999999999998543  234443333


Q ss_pred             HHHc-----------------CCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           81 ADEI-----------------GIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        81 ~~~~-----------------~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                      ....                 +++++++||++|+|++++|++|++.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~  184 (186)
T d1f6ba_         139 FGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY  184 (186)
T ss_dssp             HTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             HhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            3211                 2358999999999999999999864

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=1e-14  Score=94.25  Aligned_cols=100  Identities=20%  Similarity=0.231  Sum_probs=71.7

Q ss_pred             ceeccchhH--------HhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC
Q 032243            2 QWDTAGQER--------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS   73 (144)
Q Consensus         2 i~Dt~G~~~--------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~   73 (144)
                      +||++|..+        .......++.++|++++++|..+..++.....|...+.... ...|+++|+||+|+...... 
T Consensus        53 ~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~iilv~NK~Dl~~~~~~-  130 (161)
T d2gj8a1          53 IIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLP-AKLPITVVRNKADITGETLG-  130 (161)
T ss_dssp             EEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSC-TTCCEEEEEECHHHHCCCCE-
T ss_pred             eccccccccccccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcc-cccceeeccchhhhhhhHHH-
Confidence            688888522        22234566789999999999998877666555544444433 46899999999998543221 


Q ss_pred             HHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHHH
Q 032243           74 YETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAAS  109 (144)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~  109 (144)
                            +.+..+.+++++||++|.|+++++++|.+.
T Consensus       131 ------~~~~~~~~~~~iSAk~~~gi~~L~~~l~~~  160 (161)
T d2gj8a1         131 ------MSEVNGHALIRLSARTGEGVDVLRNHLKQS  160 (161)
T ss_dssp             ------EEEETTEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ------HHHhCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence                  111234689999999999999999999875

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.44  E-value=3.8e-13  Score=89.72  Aligned_cols=107  Identities=20%  Similarity=0.248  Sum_probs=72.8

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC--HHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETAKA   79 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~   79 (144)
                      |+||||+..|......-+..+|++++|+|+.+........+.+..+....  ..+++++.||+|+.+.....  ......
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~~~~~~~  159 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIKE  159 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--CccceeeeecccchhhHHHHHHHHHHHH
Confidence            68999999999888888889999999999887422222233233333332  24578889999986533211  112222


Q ss_pred             HHHHc---CCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           80 FADEI---GIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        80 ~~~~~---~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      +....   .++++++||++|.|+++|++.|.+.+
T Consensus       160 ~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         160 FIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            22222   25899999999999999999887754

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.44  E-value=2.4e-14  Score=97.54  Aligned_cols=116  Identities=21%  Similarity=0.153  Sum_probs=79.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHH----------HHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE----------SFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~   69 (144)
                      ++||++|+++++..|..++++++++++++|+++..          .+.+... |...+........|++|++||+|+...
T Consensus        50 ~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~  129 (221)
T d1azta2          50 HMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAE  129 (221)
T ss_dssp             EEEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHH
T ss_pred             EEEecCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhh
Confidence            58999999999999999999999999999987643          2222223 333333333357999999999998422


Q ss_pred             cc----c--------------------------CHHHHHHHH-----HHc--------CCcEEEeecCCCCCHHHHHHHH
Q 032243           70 KV----V--------------------------SYETAKAFA-----DEI--------GIPFMETSAKDSTNVEQAFMAM  106 (144)
Q Consensus        70 ~~----~--------------------------~~~~~~~~~-----~~~--------~~~~~~~Sa~~~~~i~~l~~~i  106 (144)
                      +.    .                          ....+..+.     +..        .+..+.+||.++.++..+|+.+
T Consensus       130 k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v  209 (221)
T d1azta2         130 KVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDC  209 (221)
T ss_dssp             HHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTT
T ss_pred             hhccCcccHHHhCccccccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHH
Confidence            10    0                          011222222     111        1245689999999999999999


Q ss_pred             HHHHHHhhcc
Q 032243          107 AASIKDRMAS  116 (144)
Q Consensus       107 ~~~~~~~~~~  116 (144)
                      .+.+.+...+
T Consensus       210 ~d~I~~~~l~  219 (221)
T d1azta2         210 RDIIQRMHLR  219 (221)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhh
Confidence            9888765443

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.41  E-value=3.1e-13  Score=92.28  Aligned_cols=108  Identities=18%  Similarity=0.164  Sum_probs=73.0

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH-------
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY-------   74 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~-------   74 (144)
                      |+||||+..|.......+..+|++|+|+|+.+.-.-.. ...+..+...   +.|+++++||+|+........       
T Consensus        74 ~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~---~~p~iivlNK~D~~~~~~~~~~~~~~~~  149 (227)
T d1g7sa4          74 FIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQT-QEALNILRMY---RTPFVVAANKIDRIHGWRVHEGRPFMET  149 (227)
T ss_dssp             EECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHHT---TCCEEEEEECGGGSTTCCCCTTCCHHHH
T ss_pred             cccccceecccccchhcccccceEEEEEecccCcccch-hHHHHHhhcC---CCeEEEEEECccCCCchhhhhhHHHHHh
Confidence            78999999998888788899999999999876322221 2333333332   589999999999854321100       


Q ss_pred             -------------HHH----HHHHHHc--------------CCcEEEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           75 -------------ETA----KAFADEI--------------GIPFMETSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        75 -------------~~~----~~~~~~~--------------~~~~~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                                   ...    ..+.+..              ..+++++||.+|.|+++|++.|.....+.
T Consensus       150 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~  219 (227)
T d1g7sa4         150 FSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY  219 (227)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence                         000    0111100              13689999999999999999988877543

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.41  E-value=9.1e-13  Score=88.55  Aligned_cols=106  Identities=18%  Similarity=0.227  Sum_probs=71.6

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHH---H
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETA---K   78 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~---~   78 (144)
                      +.||||+..|.......+..+|++|+|+|..+.-.-....+.+.......  ..|+++++||+|+.+.... ....   .
T Consensus        90 iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~--i~~iIV~vNK~Dl~~~~~~-~~~~~~~~  166 (205)
T d2qn6a3          90 FIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEA-LSQYRQIK  166 (205)
T ss_dssp             EEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEECGGGSCHHHH-HHHHHHHH
T ss_pred             EeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcC--CceeeeccccCCCccchHH-HHHHHHHH
Confidence            78999999998887777889999999999876411111222222222222  3588899999999653321 1111   1


Q ss_pred             HHHHHc---CCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           79 AFADEI---GIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        79 ~~~~~~---~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      .+....   +++++++||++|.|++++++.|...+
T Consensus       167 ~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         167 QFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence            112211   25899999999999999999888764

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.34  E-value=2.7e-12  Score=82.47  Aligned_cols=99  Identities=22%  Similarity=0.138  Sum_probs=65.6

Q ss_pred             CceeccchhH--------H-hhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcc
Q 032243            1 MQWDTAGQER--------F-RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKV   71 (144)
Q Consensus         1 qi~Dt~G~~~--------~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~   71 (144)
                      ++|||||...        + .......+.++|++++|+|.+++........ ...+     ...++++++||.|+.+...
T Consensus        51 ~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~-~~~~-----~~~~~i~~~~k~d~~~~~~  124 (160)
T d1xzpa2          51 RIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKI-LERI-----KNKRYLVVINKVDVVEKIN  124 (160)
T ss_dssp             EEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHH-HHHH-----TTSSEEEEEEECSSCCCCC
T ss_pred             EeccccccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCcchhhhhh-hhhc-----ccccceeeeeeccccchhh
Confidence            3799999421        1 0112233678999999999998765443221 1111     2478999999999865432


Q ss_pred             cCHHHHHHHHHHcCCcEEEeecCCCCCHHHHHHHHHH
Q 032243           72 VSYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMAA  108 (144)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~  108 (144)
                        .++... ....+.+++++||++|.|++++++.|.+
T Consensus       125 --~~~~~~-~~~~~~~~~~vSA~~g~gi~~L~~~I~k  158 (160)
T d1xzpa2         125 --EEEIKN-KLGTDRHMVKISALKGEGLEKLEESIYR  158 (160)
T ss_dssp             --HHHHHH-HHTCSTTEEEEEGGGTCCHHHHHHHHHH
T ss_pred             --hHHHHH-HhCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence              333222 2233468999999999999999998865

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.32  E-value=2e-12  Score=85.16  Aligned_cols=107  Identities=18%  Similarity=0.247  Sum_probs=67.2

Q ss_pred             CceeccchhHHhh----hhh---hhhcCCCEEEEEEeCCCHHHHHHH---HHHHHHHHHh--cCCCCcEEEEEeCCCCCC
Q 032243            1 MQWDTAGQERFRT----ITS---SYYRGAHGIIIVYDVTDQESFNNV---KQWLNEIDRY--ASDNVNKLLVGNKCDLTA   68 (144)
Q Consensus         1 qi~Dt~G~~~~~~----~~~---~~~~~~d~~i~v~d~~~~~s~~~~---~~~~~~~~~~--~~~~~p~ilv~nK~Dl~~   68 (144)
                      ++|||||..+...    +..   ..+.+++.++++++..........   ..+.......  .....|+++|+||+|+..
T Consensus        52 ~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~  131 (185)
T d1lnza2          52 VMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE  131 (185)
T ss_dssp             EEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT
T ss_pred             EEecCCCcccCchHHHHHHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHh
Confidence            4799999743222    112   224578999999876543322111   1111111221  123579999999999854


Q ss_pred             CcccCHHHHHHHHHHc--CCcEEEeecCCCCCHHHHHHHHHHHHH
Q 032243           69 NKVVSYETAKAFADEI--GIPFMETSAKDSTNVEQAFMAMAASIK  111 (144)
Q Consensus        69 ~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~i~~~~~  111 (144)
                      .    ......+.+..  +.+++.+||++|.|++++++.|.+.+.
T Consensus       132 ~----~~~~~~~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L~  172 (185)
T d1lnza2         132 A----AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLE  172 (185)
T ss_dssp             H----HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred             H----HHHHHHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHhhh
Confidence            2    22333344444  578999999999999999999988874

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=3.7e-11  Score=80.27  Aligned_cols=69  Identities=20%  Similarity=0.328  Sum_probs=52.0

Q ss_pred             ceeccchhHHh-hhhhhhhcCCCEEEEEEeCCCHHH-HHHHHHHHHHHHHh---cCCCCcEEEEEeCCCCCCCc
Q 032243            2 QWDTAGQERFR-TITSSYYRGAHGIIIVYDVTDQES-FNNVKQWLNEIDRY---ASDNVNKLLVGNKCDLTANK   70 (144)
Q Consensus         2 i~Dt~G~~~~~-~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~~   70 (144)
                      +||++|+++++ ..+..++..++++++|+|+++..+ +.+...++..+...   ....+|++|++||+|+....
T Consensus        51 ~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1          51 LIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             EEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred             eeeccccccccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence            79999999885 577888899999999999998765 34555555444221   22458999999999997543

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.27  E-value=2e-11  Score=80.18  Aligned_cols=107  Identities=23%  Similarity=0.216  Sum_probs=70.2

Q ss_pred             ceeccchhHH------------hhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCC
Q 032243            2 QWDTAGQERF------------RTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTAN   69 (144)
Q Consensus         2 i~Dt~G~~~~------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~   69 (144)
                      ++||+|....            ......+++.+|++++|+|++....-. ...++..+...   ..|+++++||.|+...
T Consensus        60 ~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~~-~~~~~~~~~~~---~~~~i~v~nK~D~~~~  135 (186)
T d1mkya2          60 FVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQ-DQRMAGLMERR---GRASVVVFNKWDLVVH  135 (186)
T ss_dssp             ESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHHT---TCEEEEEEECGGGSTT
T ss_pred             eeccCCccccccccccccccchhHHHHHHHhcCCEEEEeecccccchhh-HHHHHHHHHHc---CCceeeeccchhhhcc
Confidence            5678875432            223445567899999999997643222 22333333333   4899999999998655


Q ss_pred             cccCHHHHHHHHHHc-----CCcEEEeecCCCCCHHHHHHHHHHHHHH
Q 032243           70 KVVSYETAKAFADEI-----GIPFMETSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        70 ~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      ......+........     ..+++++||++|.|++++++.|...+..
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         136 REKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             GGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            544444443333322     2489999999999999999999776643

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.24  E-value=2.5e-11  Score=80.40  Aligned_cols=91  Identities=13%  Similarity=0.148  Sum_probs=62.0

Q ss_pred             hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHc----CCcEEE
Q 032243           15 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEI----GIPFME   90 (144)
Q Consensus        15 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~   90 (144)
                      +...+..+|++++|+|++...... ...++..+...   ..|+++|+||+|+.+.... .+....+.+.+    ..++++
T Consensus        99 ~~~~~~~~~~vi~viD~~~~~~~~-~~~~~~~l~~~---~~piivv~NK~D~~~~~~~-~~~~~~~~~~l~~~~~~~~~~  173 (195)
T d1svia_          99 YITTREELKAVVQIVDLRHAPSND-DVQMYEFLKYY---GIPVIVIATKADKIPKGKW-DKHAKVVRQTLNIDPEDELIL  173 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHHT---TCCEEEEEECGGGSCGGGH-HHHHHHHHHHHTCCTTSEEEE
T ss_pred             hhccccchhhhhhhhhcccccccc-ccccccccccc---cCcceechhhccccCHHHH-HHHHHHHHHHhcccCCCCEEE
Confidence            344456789999999987653222 23344444433   4899999999998654443 22233333332    347999


Q ss_pred             eecCCCCCHHHHHHHHHHHH
Q 032243           91 TSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        91 ~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      +||++|.|+++++++|.+.+
T Consensus       174 ~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         174 FSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             CCTTTCTTHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999998876

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.20  E-value=2.3e-11  Score=81.17  Aligned_cols=105  Identities=16%  Similarity=0.158  Sum_probs=71.6

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc---CHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV---SYETAK   78 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~---~~~~~~   78 (144)
                      ++||||+..|...+...+..+|++++|+|+.+--. ....+.+.......  ..|+|+++||+|+......   -..+..
T Consensus        70 ~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~-~QT~~~~~~a~~~~--~~~iIv~iNK~D~~~~~~~~~~i~~~i~  146 (196)
T d1d2ea3          70 HTDCPGHADYVKNMITGTAPLDGCILVVAANDGPM-PQTREHLLLARQIG--VEHVVVYVNKADAVQDSEMVELVELEIR  146 (196)
T ss_dssp             EEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSC-HHHHHHHHHHHHTT--CCCEEEEEECGGGCSCHHHHHHHHHHHH
T ss_pred             eecCcchHHHHHHHHHHHhhcCeEEEEEEcCCCCc-hhHHHHHHHHHHhc--CCcEEEEEecccccccHHHHHHHHHHHH
Confidence            78999999999988888899999999999986321 22233333333322  3578999999998643221   012334


Q ss_pred             HHHHHcC-----CcEEEeecCCC----------CCHHHHHHHHHHH
Q 032243           79 AFADEIG-----IPFMETSAKDS----------TNVEQAFMAMAAS  109 (144)
Q Consensus        79 ~~~~~~~-----~~~~~~Sa~~~----------~~i~~l~~~i~~~  109 (144)
                      .+....+     ++++++||++|          .++.++++.|.+.
T Consensus       147 ~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~  192 (196)
T d1d2ea3         147 ELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (196)
T ss_dssp             HHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence            4444444     47999999988          4788888776554

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.01  E-value=9.1e-10  Score=74.57  Aligned_cols=96  Identities=20%  Similarity=0.156  Sum_probs=63.7

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCH----HHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSY----ETA   77 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~----~~~   77 (144)
                      |+||||+..|...+..-+..+|++++|+|+.+--.-. ..+-+.......  -..++++.||.|+.+..+...    .++
T Consensus        93 iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Q-t~e~~~~~~~~g--v~~iiv~vNK~D~~~~~~~~~~~~~~~l  169 (222)
T d1zunb3          93 IADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLLG--IKHIVVAINKMDLNGFDERVFESIKADY  169 (222)
T ss_dssp             EEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHTT--CCEEEEEEECTTTTTSCHHHHHHHHHHH
T ss_pred             EEeccchhhhhhhhccccccCceEEEEeccccCcccc-hHHHHHHHHHcC--CCEEEEEEEccccccccceehhhhHHHH
Confidence            7899999999998888889999999999987642222 122222222221  134788999999965322111    233


Q ss_pred             HHHHHHcCC-----cEEEeecCCCCCHH
Q 032243           78 KAFADEIGI-----PFMETSAKDSTNVE  100 (144)
Q Consensus        78 ~~~~~~~~~-----~~~~~Sa~~~~~i~  100 (144)
                      ..+.+..++     +++++||.+|.|+.
T Consensus       170 ~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         170 LKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             hhhhHhhccCCCceEEEEEEcccCccCC
Confidence            444544443     68999999999884

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.95  E-value=6.9e-10  Score=74.22  Aligned_cols=91  Identities=14%  Similarity=0.160  Sum_probs=59.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCccc---CHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV---SYET   76 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~---~~~~   76 (144)
                      .|+||||+..|...+..-+..+|++|+|+|+++--.... ...+......   ++| +++++||+|+.+....   -..+
T Consensus        70 ~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt-~~~~~~~~~~---gi~~iiv~iNK~D~~~~~~~~~~~~~~  145 (204)
T d2c78a3          70 SHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEME  145 (204)
T ss_dssp             EEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHH
T ss_pred             EEEeCCCchhhHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEEecccCCCHHHHHHHHHH
Confidence            378999999999988888999999999999976433222 3333333333   355 6778999998653221   0123


Q ss_pred             HHHHHHHcC-----CcEEEeecCC
Q 032243           77 AKAFADEIG-----IPFMETSAKD   95 (144)
Q Consensus        77 ~~~~~~~~~-----~~~~~~Sa~~   95 (144)
                      +..+....+     .++++.|+..
T Consensus       146 i~~~l~~~~~~~~~i~~i~~sa~~  169 (204)
T d2c78a3         146 VRDLLNQYEFPGDEVPVIRGSALL  169 (204)
T ss_dssp             HHHHHHHTTSCTTTSCEEECCHHH
T ss_pred             HHHHHHhcCCCcccceeeeeechh
Confidence            333343333     4688888764

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.88  E-value=2.3e-09  Score=72.43  Aligned_cols=89  Identities=19%  Similarity=0.222  Sum_probs=64.6

Q ss_pred             hhhhhhcCCCEEEEEEeCCCH-HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH--cCCcEEE
Q 032243           14 ITSSYYRGAHGIIIVYDVTDQ-ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADE--IGIPFME   90 (144)
Q Consensus        14 ~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~   90 (144)
                      +.+..+.|.|.+++|+++.+| .+...+++++......   +++.+||+||+||.+...  .+....+...  .+.+++.
T Consensus         3 l~RP~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~---~i~pvIvlnK~DL~~~~~--~~~~~~~~~~~~~~~~v~~   77 (225)
T d1u0la2           3 LTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN---ELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVK   77 (225)
T ss_dssp             ETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT---TCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEE
T ss_pred             cCCCCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc---CCCEEEEEeCcccCCHHH--HHHHHHhhcccccceeEEE
Confidence            345567899999999998875 3566677777766555   489999999999965332  2222333332  3468999


Q ss_pred             eecCCCCCHHHHHHHHH
Q 032243           91 TSAKDSTNVEQAFMAMA  107 (144)
Q Consensus        91 ~Sa~~~~~i~~l~~~i~  107 (144)
                      +|++++.|++++.+.+.
T Consensus        78 vSa~~~~g~~~L~~~l~   94 (225)
T d1u0la2          78 TSAKTGMGIEELKEYLK   94 (225)
T ss_dssp             CCTTTCTTHHHHHHHHS
T ss_pred             eccccchhHhhHHHHhc
Confidence            99999999999988663

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=3.8e-09  Score=68.44  Aligned_cols=87  Identities=17%  Similarity=0.154  Sum_probs=57.7

Q ss_pred             hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC-CcEEEeecCCCC
Q 032243           19 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG-IPFMETSAKDST   97 (144)
Q Consensus        19 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~   97 (144)
                      ...+++++++.|..+....  ...+...+..   ...|.++++||.|+...+.........+...++ .+++++||++|.
T Consensus        83 ~~~~~~~l~~~d~~~~~~~--~~~~~~~l~~---~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~  157 (179)
T d1egaa1          83 IGDVELVIFVVEGTRWTPD--DEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL  157 (179)
T ss_dssp             CCCEEEEEEEEETTCCCHH--HHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred             hhhcceeEEEEecCccchh--HHHHHHHhhh---ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCC
Confidence            4567888888887753221  1222222222   247899999999986553322333344444455 489999999999


Q ss_pred             CHHHHHHHHHHHH
Q 032243           98 NVEQAFMAMAASI  110 (144)
Q Consensus        98 ~i~~l~~~i~~~~  110 (144)
                      |++++++.|.+.+
T Consensus       158 gi~~L~~~i~~~l  170 (179)
T d1egaa1         158 NVDTIAAIVRKHL  170 (179)
T ss_dssp             THHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHhC
Confidence            9999999987765

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.75  E-value=1.4e-08  Score=68.66  Aligned_cols=98  Identities=18%  Similarity=0.242  Sum_probs=62.8

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHH---HH---HHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc--C
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SF---NNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--S   73 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~   73 (144)
                      |.||||+..|...+..-+.-+|++|+|+|+.+--   ++   ....+-+......  ...++++++||+|+......  .
T Consensus        85 iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~--~~~~iIv~iNK~D~~~~~~~~~~  162 (224)
T d1jnya3          85 IIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPPYDEKR  162 (224)
T ss_dssp             ECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSSTTCHHH
T ss_pred             EeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh--CCCceEEEEEcccCCCccccHHH
Confidence            7899999999998888899999999999998631   11   1111211112222  23568889999998542211  0


Q ss_pred             H----HHHHHHHHHcC-----CcEEEeecCCCCCHHH
Q 032243           74 Y----ETAKAFADEIG-----IPFMETSAKDSTNVEQ  101 (144)
Q Consensus        74 ~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  101 (144)
                      .    .....+....+     .+++++||..|.|+.+
T Consensus       163 ~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         163 YKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             HHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             HHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            1    12233333333     4789999999998853

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.73  E-value=1.5e-08  Score=69.21  Aligned_cols=97  Identities=16%  Similarity=0.180  Sum_probs=63.4

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHH-------HHHHHHHHHHHhcCCCCc-EEEEEeCCCCCCCccc
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFN-------NVKQWLNEIDRYASDNVN-KLLVGNKCDLTANKVV   72 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~   72 (144)
                      .|.||||+..|...+..-+.-+|++|+|+|+..- .|+       ....-+......   .+| +++++||+|+.+....
T Consensus        87 ~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G-~~e~g~~~~~QT~eh~~~~~~~---gv~~iiv~iNKmD~~~~d~~  162 (239)
T d1f60a3          87 TVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG-EFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSVKWDES  162 (239)
T ss_dssp             EEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH-HHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGGTTCHH
T ss_pred             EEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCC-ccccccCchHhHHHHHHHHHHc---CCCeEEEEEECCCCCCCCHH
Confidence            3789999999999888889999999999998752 121       122212222222   344 7889999998543221


Q ss_pred             C----HHHHHHHHHHcC-----CcEEEeecCCCCCHHH
Q 032243           73 S----YETAKAFADEIG-----IPFMETSAKDSTNVEQ  101 (144)
Q Consensus        73 ~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  101 (144)
                      .    ..+...+....+     ++++++|+..|.|+-+
T Consensus       163 ~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         163 RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            1    123344444444     4789999999988744

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.70  E-value=4.2e-08  Score=67.13  Aligned_cols=101  Identities=19%  Similarity=0.195  Sum_probs=53.8

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHH---HHH---HHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCccc--C
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQE---SFN---NVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVV--S   73 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~   73 (144)
                      |.||||+..|...+..-..-+|++++|+|+.+-.   ++.   ...+.+.......  -.++++++||+|+......  .
T Consensus       106 ~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~--i~~iiv~iNKmD~~~~~~~e~~  183 (245)
T d1r5ba3         106 LLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQG--INHLVVVINKMDEPSVQWSEER  183 (245)
T ss_dssp             ECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTT--CSSEEEEEECTTSTTCSSCHHH
T ss_pred             eecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcC--CCeEEEEEEcCCCCccchhHHH
Confidence            6899999999998888888999999999997631   110   1222222222222  2347889999998542211  0


Q ss_pred             HH----HHHHHHHHc-C------CcEEEeecCCCCCHHHHHH
Q 032243           74 YE----TAKAFADEI-G------IPFMETSAKDSTNVEQAFM  104 (144)
Q Consensus        74 ~~----~~~~~~~~~-~------~~~~~~Sa~~~~~i~~l~~  104 (144)
                      ..    ++..+.+.. +      ++++++||++|+|+.++++
T Consensus       184 ~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         184 YKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             HHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            11    122222222 2      4799999999999976543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.67  E-value=3.4e-09  Score=71.79  Aligned_cols=90  Identities=13%  Similarity=0.179  Sum_probs=65.0

Q ss_pred             hhhhhhcCCCEEEEEEeCCCH-HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHHcCCcEEE
Q 032243           14 ITSSYYRGAHGIIIVYDVTDQ-ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETAKAFADEIGIPFME   90 (144)
Q Consensus        14 ~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~   90 (144)
                      +.+..+.|.|.+++|+++.++ .++..+++++......   +++.+||+||.||.+.....  ...........+++++.
T Consensus         3 l~RP~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~---~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~   79 (231)
T d1t9ha2           3 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN---DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL   79 (231)
T ss_dssp             ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT---TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             CCCCCccccCEEEEEEECCCCCCCHHHHHHHHHHHHHc---CCCEEEEEecccccccHHHHHHHHHHHHHHhhcccccee
Confidence            345567899999999998775 4566777777666544   48899999999996543321  11223344567899999


Q ss_pred             eecCCCCCHHHHHHHH
Q 032243           91 TSAKDSTNVEQAFMAM  106 (144)
Q Consensus        91 ~Sa~~~~~i~~l~~~i  106 (144)
                      +|+.++.|++++.+.+
T Consensus        80 ~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          80 TSSKDQDSLADIIPHF   95 (231)
T ss_dssp             CCHHHHTTCTTTGGGG
T ss_pred             eecCChhHHHHHHHhh
Confidence            9999999998877644

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.66  E-value=8.4e-08  Score=66.35  Aligned_cols=63  Identities=13%  Similarity=0.159  Sum_probs=47.7

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      +|+||||+..|.......+.-+|++|+|+|..+--... ....+......   +.|.++++||.|..
T Consensus        70 n~iDtPGh~dF~~e~~~al~~~D~avlvvda~~Gv~~~-t~~~~~~~~~~---~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          70 FLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAERL---GLPRMVVVTKLDKG  132 (267)
T ss_dssp             EEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred             eEEccCchhhhhhhhhhhhcccCceEEEeeccCCccch-hHHHHHhhhhc---cccccccccccccc
Confidence            47999999999998888899999999999988643222 23333334333   58999999999963

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=3.7e-08  Score=65.08  Aligned_cols=70  Identities=20%  Similarity=0.356  Sum_probs=49.2

Q ss_pred             CceeccchhHHhhhhhhhh----cCCCEEEEEEeCCC-HHHHHHHHHHHHH----HHHhcCCCCcEEEEEeCCCCCCCc
Q 032243            1 MQWDTAGQERFRTITSSYY----RGAHGIIIVYDVTD-QESFNNVKQWLNE----IDRYASDNVNKLLVGNKCDLTANK   70 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~----~~~d~~i~v~d~~~-~~s~~~~~~~~~~----~~~~~~~~~p~ilv~nK~Dl~~~~   70 (144)
                      ++|||||++++...+..++    ..++.+++++|..+ ..++.++..|+..    +......+.|+++++||+|+.+..
T Consensus        49 ~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          49 TLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             EEEecccccchhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            4799999988766655544    45689999999764 4555655555433    334444579999999999986543

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.52  E-value=1.7e-07  Score=64.94  Aligned_cols=93  Identities=15%  Similarity=0.147  Sum_probs=64.0

Q ss_pred             hhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEee
Q 032243           13 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETS   92 (144)
Q Consensus        13 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S   92 (144)
                      ......++.+|++++|+|+.++-+..+  ..+..+.    ...|.++|+||+|+.+...  .+....+....+...+.+|
T Consensus         7 r~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~----~~Kp~IlVlNK~DLv~~~~--~~~w~~~f~~~~~~~i~is   78 (273)
T d1puja_           7 REVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL----KNKPRIMLLNKADKADAAV--TQQWKEHFENQGIRSLSIN   78 (273)
T ss_dssp             HHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC----SSSCEEEEEECGGGSCHHH--HHHHHHHHHTTTCCEEECC
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH----cCCCeEEEEECccCCchHH--HHHHHHHHHhcCCccceee
Confidence            344567899999999999988754332  1122221    1479999999999965322  2223333444567899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHh
Q 032243           93 AKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        93 a~~~~~i~~l~~~i~~~~~~~  113 (144)
                      +.++.+...+...+...+...
T Consensus        79 a~~~~~~~~~~~~~~~~l~~~   99 (273)
T d1puja_          79 SVNGQGLNQIVPASKEILQEK   99 (273)
T ss_dssp             TTTCTTGGGHHHHHHHHHHHH
T ss_pred             cccCCCccccchhhhhhhhhh
Confidence            999999998888877776543

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.47  E-value=5.4e-07  Score=60.54  Aligned_cols=107  Identities=16%  Similarity=0.061  Sum_probs=62.0

Q ss_pred             ceeccchhHHhhhh---hhhh--cCCCEEEEEEeCC---CHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC
Q 032243            2 QWDTAGQERFRTIT---SSYY--RGAHGIIIVYDVT---DQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS   73 (144)
Q Consensus         2 i~Dt~G~~~~~~~~---~~~~--~~~d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~   73 (144)
                      +.|++|+..+....   ...+  ...+.+++++|+.   ++..+..............  ..|.++++||+|+.......
T Consensus        99 ~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~--~~~~ivvinK~D~~~~~~~~  176 (244)
T d1yrba1          99 LIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRL--GATTIPALNKVDLLSEEEKE  176 (244)
T ss_dssp             EEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH--TSCEEEEECCGGGCCHHHHH
T ss_pred             eeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHh--CCCceeeeeccccccHHHHH
Confidence            57999987654322   2222  2467899999864   3333322211111111111  47999999999986532210


Q ss_pred             HH--------------------------HHHHHHHH--cCCcEEEeecCCCCCHHHHHHHHHHHH
Q 032243           74 YE--------------------------TAKAFADE--IGIPFMETSAKDSTNVEQAFMAMAASI  110 (144)
Q Consensus        74 ~~--------------------------~~~~~~~~--~~~~~~~~Sa~~~~~i~~l~~~i~~~~  110 (144)
                      ..                          ........  ..++++++||++|+|+++++..|.++.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         177 RHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            00                          00001111  135899999999999999999887753

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.45  E-value=3e-07  Score=63.76  Aligned_cols=82  Identities=18%  Similarity=0.304  Sum_probs=56.5

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAF   80 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~   80 (144)
                      +|+||||+..|.......+.-+|++|+|+|..+--.-. ....+.....+   +.|.++++||.|..... . ..-..++
T Consensus        74 n~iDtPG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~-T~~~w~~a~~~---~lP~i~fINKmDr~~ad-~-~~~l~ei  147 (276)
T d2bv3a2          74 NIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQ-SETVWRQAEKY---KVPRIAFANKMDKTGAD-L-WLVIRTM  147 (276)
T ss_dssp             EEECCCSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHH-HHHHHHHHHTT---TCCEEEEEECTTSTTCC-H-HHHHHHH
T ss_pred             EEecCCchhhhHHHHHHHHHhhhheEEeccccCCcchh-HHHHHHHHHHc---CCCEEEEEecccccccc-c-chhHHHH
Confidence            47999999999998888899999999999988643222 23333444333   59999999999974322 1 3334444


Q ss_pred             HHHcCCcE
Q 032243           81 ADEIGIPF   88 (144)
Q Consensus        81 ~~~~~~~~   88 (144)
                      .+.++...
T Consensus       148 ~~~l~~~~  155 (276)
T d2bv3a2         148 QERLGARP  155 (276)
T ss_dssp             HHTTCCCE
T ss_pred             HHHhCCCe
Confidence            55555443

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=7.9e-07  Score=57.16  Aligned_cols=86  Identities=12%  Similarity=0.132  Sum_probs=52.1

Q ss_pred             cCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH---HcC--CcEEEeecC
Q 032243           20 RGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFAD---EIG--IPFMETSAK   94 (144)
Q Consensus        20 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~---~~~--~~~~~~Sa~   94 (144)
                      ...+.++.+.+......... ..++..+...   ..++++++||.|+.+.... ......+.+   ..+  .+++++||+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~v~~k~D~~~~~~~-~~~~~~~~~~l~~~~~~~~~i~vSA~  171 (188)
T d1puia_          97 QSLQGLVVLMDIRHPLKDLD-QQMIEWAVDS---NIAVLVLLTKADKLASGAR-KAQLNMVREAVLAFNGDVQVETFSSL  171 (188)
T ss_dssp             TTEEEEEEEEETTSCCCHHH-HHHHHHHHHT---TCCEEEEEECGGGSCHHHH-HHHHHHHHHHHGGGCSCEEEEECBTT
T ss_pred             hheeEEEEeecccccchhHH-HHHHHHhhhc---cccccchhhhhhccCHHHH-HHHHHHHHHHHHhhCCCCcEEEEeCC
Confidence            34555666666655432222 2333333332   4789999999998653322 112222222   222  478999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 032243           95 DSTNVEQAFMAMAASI  110 (144)
Q Consensus        95 ~~~~i~~l~~~i~~~~  110 (144)
                      +|.|+++|++.|.+.+
T Consensus       172 ~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         172 KKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             TTBSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999987754

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.19  E-value=5.1e-07  Score=64.37  Aligned_cols=62  Identities=19%  Similarity=0.249  Sum_probs=47.0

Q ss_pred             CceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Q 032243            1 MQWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDL   66 (144)
Q Consensus         1 qi~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl   66 (144)
                      +|+||||+..|.......+.-+|++++|+|+.+--.... ...+......   +.|+++++||+|.
T Consensus        99 nliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT-~~~~~~a~~~---~~p~i~viNKiDr  160 (341)
T d1n0ua2          99 NLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQT-ETVLRQALGE---RIKPVVVINKVDR  160 (341)
T ss_dssp             EEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHH-HHHHHHHHHT---TCEEEEEEECHHH
T ss_pred             EEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhH-HHHHHHHHHc---CCCeEEEEECccc
Confidence            378999999999888888999999999999987433332 2222223222   5899999999996

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.97  E-value=6.8e-06  Score=59.65  Aligned_cols=104  Identities=16%  Similarity=0.152  Sum_probs=60.1

Q ss_pred             ceeccchhHHhhh-----hhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC-------CC
Q 032243            2 QWDTAGQERFRTI-----TSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT-------AN   69 (144)
Q Consensus         2 i~Dt~G~~~~~~~-----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-------~~   69 (144)
                      ||||||.......     ....+..+|.++++.|..-..  .+ ..++..+...   +.|+++|.||+|..       ..
T Consensus       111 l~DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~--~d-~~l~~~l~~~---~k~~~~V~nK~D~~~~~~~~~~~  184 (400)
T d1tq4a_         111 FWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKK--ND-IDIAKAISMM---KKEFYFVRTKVDSDITNEADGEP  184 (400)
T ss_dssp             EEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCH--HH-HHHHHHHHHT---TCEEEEEECCHHHHHHHHHTTCC
T ss_pred             EEeCCCcccccccHHHHHHHhhhhcceEEEEecCCCCCH--HH-HHHHHHHHHc---CCCEEEEEeCcccccchhhhccc
Confidence            8999997543222     223356789998888754322  22 2333334333   48999999999952       11


Q ss_pred             cccCHHHH--------HHHHHHcCC---cEEEeecCC--CCCHHHHHHHHHHHHH
Q 032243           70 KVVSYETA--------KAFADEIGI---PFMETSAKD--STNVEQAFMAMAASIK  111 (144)
Q Consensus        70 ~~~~~~~~--------~~~~~~~~~---~~~~~Sa~~--~~~i~~l~~~i~~~~~  111 (144)
                      .....+..        ....+..+.   ++|.+|..+  ..|+.++.+.+.+.+.
T Consensus       185 ~~~~~e~~l~~ir~~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~  239 (400)
T d1tq4a_         185 QTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP  239 (400)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred             ccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhH
Confidence            11111111        111222333   678888764  4589999998887764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.85  E-value=3.7e-05  Score=54.20  Aligned_cols=87  Identities=8%  Similarity=0.057  Sum_probs=53.0

Q ss_pred             hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH----------cCCcE
Q 032243           19 YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADE----------IGIPF   88 (144)
Q Consensus        19 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~----------~~~~~   88 (144)
                      ...+|..++|+....-+.   ++.....+.     ...-++|+||+|+.............+...          +..++
T Consensus       162 ~~~~D~~v~v~~p~~GD~---iQ~~k~gil-----E~aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V  233 (323)
T d2qm8a1         162 ADLTDFFLVLMLPGAGDE---LQGIKKGIF-----ELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPV  233 (323)
T ss_dssp             HTTSSEEEEEECSCC---------CCTTHH-----HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCE
T ss_pred             hcccceEEEEeeccchhh---hhhhhhhHh-----hhhheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCce
Confidence            345899999998876432   222111121     134589999999855433211111122222          22379


Q ss_pred             EEeecCCCCCHHHHHHHHHHHHHHh
Q 032243           89 METSAKDSTNVEQAFMAMAASIKDR  113 (144)
Q Consensus        89 ~~~Sa~~~~~i~~l~~~i~~~~~~~  113 (144)
                      +.+||.+|.|++++++.|.+.....
T Consensus       234 ~~~Sa~~g~Gi~el~~~I~~~~~~~  258 (323)
T d2qm8a1         234 VTISGLHGKGLDSLWSRIEDHRSKL  258 (323)
T ss_dssp             EEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999998876544

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=6.7e-05  Score=52.91  Aligned_cols=87  Identities=14%  Similarity=0.062  Sum_probs=51.1

Q ss_pred             hhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHHc-------CCcE
Q 032243           18 YYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS--YETAKAFADEI-------GIPF   88 (144)
Q Consensus        18 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~-------~~~~   88 (144)
                      +...+|.+++|.+...   .++++.....+..     .+-++|+||+|........  ..+........       ..++
T Consensus       164 i~~~aD~~l~v~~P~~---Gd~iq~~k~gi~e-----~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V  235 (327)
T d2p67a1         164 VARMVDCFISLQIAGG---GDDLQGIKKGLME-----VADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRV  235 (327)
T ss_dssp             HHTTCSEEEEEECC---------CCCCHHHHH-----HCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEE
T ss_pred             hhhccceEEEEecCCC---chhhhhhchhhhc-----cccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCccee
Confidence            4567899999987643   3343322222322     2447889999975422210  11112222211       2379


Q ss_pred             EEeecCCCCCHHHHHHHHHHHHHH
Q 032243           89 METSAKDSTNVEQAFMAMAASIKD  112 (144)
Q Consensus        89 ~~~Sa~~~~~i~~l~~~i~~~~~~  112 (144)
                      +.+||.+|.|++++++.|.+....
T Consensus       236 ~~~SA~~g~Gi~eL~~~I~~~~~~  259 (327)
T d2p67a1         236 LTCSALEKRGIDEIWHAIIDFKTA  259 (327)
T ss_dssp             EECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999887654

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.87  E-value=0.0025  Score=42.93  Aligned_cols=72  Identities=13%  Similarity=0.081  Sum_probs=39.3

Q ss_pred             ceeccchhH-------Hhhhhhhh--hcCCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCC--CCcEEEEEeCCCCCCC
Q 032243            2 QWDTAGQER-------FRTITSSY--YRGAHGIIIVYDVTDQE-SFNNVKQWLNEIDRYASD--NVNKLLVGNKCDLTAN   69 (144)
Q Consensus         2 i~Dt~G~~~-------~~~~~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~   69 (144)
                      ||||||...       .......+  ....|+++||++++... +..+ ...+..+......  ..++++|+||.|...+
T Consensus        84 viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~-~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~  162 (257)
T d1h65a_          84 IIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLD-KLVAKAITDSFGKGIWNKAIVALTHAQFSPP  162 (257)
T ss_dssp             EEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHH-HHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred             EEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHH-HHHHHHHHHHcchhhhhCEEEEEECcccCCc
Confidence            799999532       11112222  23578999999876532 1111 2222333322211  2578999999998765


Q ss_pred             cccCH
Q 032243           70 KVVSY   74 (144)
Q Consensus        70 ~~~~~   74 (144)
                      .....
T Consensus       163 ~~~~~  167 (257)
T d1h65a_         163 DGLPY  167 (257)
T ss_dssp             GGCCH
T ss_pred             CCCcH
Confidence            44433

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.63  E-value=0.0016  Score=44.61  Aligned_cols=65  Identities=15%  Similarity=0.155  Sum_probs=40.2

Q ss_pred             ceeccch-------------hHHhhhhhhhhcCCCEEE-EEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            2 QWDTAGQ-------------ERFRTITSSYYRGAHGII-IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         2 i~Dt~G~-------------~~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      |+||||.             .....+...|+.+.+.++ +|.+.+....-.....+...+   .+...++++|+||+|..
T Consensus       129 liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~---~~~~~r~i~Vltk~D~~  205 (299)
T d2akab1         129 LVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV---DPQGQRTIGVITKLDLM  205 (299)
T ss_dssp             EEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHH---CTTCSSEEEEEECGGGS
T ss_pred             EEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHh---CcCCCceeeEEeccccc
Confidence            6899984             223456778887777554 555555443333333433333   33346899999999986


Q ss_pred             CC
Q 032243           68 AN   69 (144)
Q Consensus        68 ~~   69 (144)
                      ++
T Consensus       206 ~~  207 (299)
T d2akab1         206 DE  207 (299)
T ss_dssp             CT
T ss_pred             cc
Confidence            54

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.21  E-value=0.0029  Score=43.42  Aligned_cols=65  Identities=17%  Similarity=0.219  Sum_probs=39.8

Q ss_pred             ceeccchh-------------HHhhhhhhhhcCCCEEEEEEe-CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCC
Q 032243            2 QWDTAGQE-------------RFRTITSSYYRGAHGIIIVYD-VTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLT   67 (144)
Q Consensus         2 i~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~   67 (144)
                      |+||||..             ....++..|+.+++.+++++. ......-.....+..   ...+....+++|+||+|..
T Consensus       135 iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~---~~~~~~~r~i~Vitk~D~~  211 (306)
T d1jwyb_         135 LVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAK---EVDPEGKRTIGVITKLDLM  211 (306)
T ss_dssp             EEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHH---HHCSSCSSEEEEEECTTSS
T ss_pred             EecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHH---HhCcCCCeEEEEEeccccc
Confidence            78999952             234577889999998777764 332211111222222   2333346899999999986


Q ss_pred             CC
Q 032243           68 AN   69 (144)
Q Consensus        68 ~~   69 (144)
                      ..
T Consensus       212 ~~  213 (306)
T d1jwyb_         212 DK  213 (306)
T ss_dssp             CS
T ss_pred             cc
Confidence            43

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.43  E-value=0.042  Score=37.04  Aligned_cols=41  Identities=10%  Similarity=0.055  Sum_probs=26.6

Q ss_pred             CCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecC
Q 032243           54 NVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAK   94 (144)
Q Consensus        54 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~   94 (144)
                      ..|++++.|..+.........+....++...+..++.+||+
T Consensus       199 ~KP~i~v~Nv~E~~~~~~~~~~~l~~~~~~~~~~vI~isa~  239 (278)
T d1jala1         199 LKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA  239 (278)
T ss_dssp             TSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             cchhhhhhccccccccccHHHHHHHHHHHhcCCeEEEeEHH
Confidence            48899999965532211111345566677778889999984

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=93.54  E-value=0.053  Score=35.16  Aligned_cols=69  Identities=12%  Similarity=0.137  Sum_probs=41.2

Q ss_pred             CCCEEEEEEeCCCH-HHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCH
Q 032243           21 GAHGIIIVYDVTDQ-ESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNV   99 (144)
Q Consensus        21 ~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i   99 (144)
                      ..+-.++|+|.+.. .....+......+       .+-=+|+||.|-...-    =.+..+....++|+..++  +|++.
T Consensus       124 ~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~~~~lI~TKlDet~~~----G~~l~~~~~~~~Pi~~i~--~Gq~p  190 (207)
T d1okkd2         124 EPKEVWLVLDAVTGQNGLEQAKKFHEAV-------GLTGVIVTKLDGTAKG----GVLIPIVRTLKVPIKFVG--VGEGP  190 (207)
T ss_dssp             CCSEEEEEEETTBCTHHHHHHHHHHHHH-------CCSEEEEECTTSSCCC----TTHHHHHHHHCCCEEEEE--CSSST
T ss_pred             CCceEEEEeecccCchHHHHHHHhhhcc-------CCceEEEeccCCCCCc----cHHHHHHHHHCCCEEEEe--CCCCh
Confidence            35788999998753 3333333322222       2446789999963321    134456777889988888  45555


Q ss_pred             HHH
Q 032243          100 EQA  102 (144)
Q Consensus       100 ~~l  102 (144)
                      +++
T Consensus       191 ~Dl  193 (207)
T d1okkd2         191 DDL  193 (207)
T ss_dssp             TCE
T ss_pred             HhC
Confidence            544

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=93.11  E-value=0.14  Score=33.18  Aligned_cols=68  Identities=22%  Similarity=0.148  Sum_probs=42.1

Q ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHHH
Q 032243           22 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ  101 (144)
Q Consensus        22 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  101 (144)
                      .+-.++|+|.+..  .+.+..........    .+-=+|+||.|-...    .=.+.......++|+..++  +|+++++
T Consensus       128 p~~~~LVl~a~~~--~~~~~~~~~~~~~~----~~~~lIlTKlDe~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         128 PHEVMLTIDASTG--QNAVSQAKLFHEAV----GLTGITLTKLDGTAK----GGVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             CSEEEEEEEGGGT--HHHHHHHHHHHHHS----CCCEEEEECCTTCTT----TTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             cceeeeehhcccC--cchHHHHhhhhhcc----CCceEEEeecCCCCC----ccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            4688999997643  22233322222222    345788999996332    2245567778889998888  6676654

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.76  E-value=0.39  Score=30.96  Aligned_cols=72  Identities=14%  Similarity=0.168  Sum_probs=40.4

Q ss_pred             CCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcC--CcEEEeecCCCC
Q 032243           21 GAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIG--IPFMETSAKDST   97 (144)
Q Consensus        21 ~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~   97 (144)
                      ..++++.|+|.........-.. +...+ .     .-=++++||+|+.+.    .+......+..+  .++++++ ....
T Consensus       121 ~l~~vi~vVDa~~~~~~~~~~~~~~~Qi-~-----~AD~ivlNK~Dl~~~----~~~~~~~l~~lNP~a~Ii~~~-~g~v  189 (222)
T d1nija1         121 LLDGVIALVDAVHADEQMNQFTIAQSQV-G-----YADRILLTKTDVAGE----AEKLHERLARINARAPVYTVT-HGDI  189 (222)
T ss_dssp             EEEEEEEEEETTTHHHHHHHCHHHHHHH-H-----TCSEEEEECTTTCSC----THHHHHHHHHHCSSSCEEECC-SSCC
T ss_pred             cccchhhhhhhhhhhhhhhhhHHHHHHH-H-----hCCcccccccccccH----HHHHHHHHHHHhCCCeEEEee-CCcc
Confidence            3688999999987543222111 11222 1     123788999998643    234444555554  5777655 3335


Q ss_pred             CHHHHH
Q 032243           98 NVEQAF  103 (144)
Q Consensus        98 ~i~~l~  103 (144)
                      ++..+|
T Consensus       190 ~~~~ll  195 (222)
T d1nija1         190 DLGLLF  195 (222)
T ss_dssp             CGGGGS
T ss_pred             CHHHhh
Confidence            666554

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=92.58  E-value=0.28  Score=31.70  Aligned_cols=69  Identities=25%  Similarity=0.155  Sum_probs=43.1

Q ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCCCCCHHH
Q 032243           22 AHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKDSTNVEQ  101 (144)
Q Consensus        22 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  101 (144)
                      .+-.++|+|.+..  .+.+..........    .+-=+|+||.|-...    .=.+.......++|+..++  +|+++++
T Consensus       130 p~~~~LVl~a~~~--~~~~~~~~~~~~~~----~~~~lI~TKlDe~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         130 PHETLLVIDATTG--QNGLVQAKIFKEAV----NVTGIILTKLDGTAK----GGITLAIARELGIPIKFIG--VGEKAED  197 (213)
T ss_dssp             CSEEEEEEEGGGH--HHHHHHHHHHHHHS----CCCEEEEECGGGCSC----TTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             cceeEEeeccccC--cchhhhhhhhcccc----CCceEEEecccCCCc----ccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            4678999998653  23333333333322    345788999996321    2245567778889988888  5666654


Q ss_pred             H
Q 032243          102 A  102 (144)
Q Consensus       102 l  102 (144)
                      +
T Consensus       198 l  198 (213)
T d1vmaa2         198 L  198 (213)
T ss_dssp             E
T ss_pred             C
Confidence            3

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=92.21  E-value=0.22  Score=32.14  Aligned_cols=88  Identities=14%  Similarity=0.044  Sum_probs=51.3

Q ss_pred             ceeccchhHHhh------hhhhh--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccC
Q 032243            2 QWDTAGQERFRT------ITSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVS   73 (144)
Q Consensus         2 i~Dt~G~~~~~~------~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~   73 (144)
                      |+||+|...+..      .+..+  .-..+-+++|+|.+...  +.+....... ...   .+-=+|+||.|...    .
T Consensus        99 lIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~~~-~~~---~~~~lI~TKlDet~----~  168 (211)
T d1j8yf2          99 IVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ--KAYDLASKFN-QAS---KIGTIIITKMDGTA----K  168 (211)
T ss_dssp             EEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHH-HHC---TTEEEEEECTTSCS----C
T ss_pred             EEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCc--chHHHHhhhh-ccc---CcceEEEecccCCC----c
Confidence            789999632221      11111  12467889999876532  2222222222 221   23457799999632    2


Q ss_pred             HHHHHHHHHHcCCcEEEeecCCCCCHHH
Q 032243           74 YETAKAFADEIGIPFMETSAKDSTNVEQ  101 (144)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  101 (144)
                      .=.+..+....++|+..++  +|+++++
T Consensus       169 ~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         169 GGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             HHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence            4456677888899998888  5777654

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.68  E-value=0.82  Score=28.92  Aligned_cols=61  Identities=10%  Similarity=0.021  Sum_probs=40.5

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEE-EEEeCCCCCC
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKL-LVGNKCDLTA   68 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~~   68 (144)
                      ++|+++...  ......+..+|.++++...+ ..++..+...+..+.+.   +.|++ +|+|+.+...
T Consensus       116 iiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~---~~~~~giv~N~~~~~~  177 (237)
T d1g3qa_         116 LIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSD  177 (237)
T ss_dssp             EEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCT
T ss_pred             EEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhhh---hhhhhhhhhccccccc
Confidence            578876542  23344567899999999864 55666666666655543   35655 7899998643

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=90.79  E-value=0.48  Score=30.36  Aligned_cols=87  Identities=21%  Similarity=0.138  Sum_probs=46.5

Q ss_pred             ceeccchhHHhh----hhhhh--hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHH
Q 032243            2 QWDTAGQERFRT----ITSSY--YRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYE   75 (144)
Q Consensus         2 i~Dt~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~   75 (144)
                      |+||+|....+.    .+..+  ..+.+-+++|.|.+...  +.+. ....+....   ..-=+|+||.|-...    .=
T Consensus        97 lIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~--~~~~-~~~~f~~~~---~~~~~I~TKlDe~~~----~G  166 (207)
T d1ls1a2          97 LVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EALS-VARAFDEKV---GVTGLVLTKLDGDAR----GG  166 (207)
T ss_dssp             EEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTH--HHHH-HHHHHHHHT---CCCEEEEECGGGCSS----CH
T ss_pred             eecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccch--hHHH-HHHHHHhhC---CCCeeEEeecCcccc----ch
Confidence            799999532211    11222  23578899999986542  2222 222222222   234588999995321    33


Q ss_pred             HHHHHHHHcCCcEEEeecCCCCCHH
Q 032243           76 TAKAFADEIGIPFMETSAKDSTNVE  100 (144)
Q Consensus        76 ~~~~~~~~~~~~~~~~Sa~~~~~i~  100 (144)
                      .+..+....+.|+..++  .|+..+
T Consensus       167 ~~l~~~~~~~~Pi~~i~--~Gq~pe  189 (207)
T d1ls1a2         167 AALSARHVTGKPIYFAG--VSEKPE  189 (207)
T ss_dssp             HHHHHHHHHCCCEEEEC--------
T ss_pred             HHHHHHHHHCCCEEEEe--CCCChh
Confidence            45667778889887776  344444

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.53  E-value=3.5  Score=25.68  Aligned_cols=80  Identities=9%  Similarity=-0.035  Sum_probs=44.8

Q ss_pred             ceeccchhHHhhhhhhhhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 032243            2 QWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKCDLTANKVVSYETAKAFA   81 (144)
Q Consensus         2 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~   81 (144)
                      |+|+++....  .....+..+|.++++...+ ..++..+...+.......  ...+-+|+|+.+... .   ......+.
T Consensus       114 iiD~~~~~~~--~~~~~l~~ad~v~~v~~~~-~~~~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~-~---~~~~~~i~  184 (232)
T d1hyqa_         114 LLDAPAGLER--SAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERLG--TKVLGVVVNRITTLG-I---EMAKNEIE  184 (232)
T ss_dssp             EEECCSSSSH--HHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHHT--CEEEEEEEEEECTTT-H---HHHHHHHH
T ss_pred             eecccccccc--hhHHHhhhhheeeeecccc-ccchhhhhhhhhhhhhcc--ccccccccccccccc-c---cchhhhHH
Confidence            5777765432  2334456799999998864 445555555444444443  123457899987422 1   22233445


Q ss_pred             HHcCCcEEE
Q 032243           82 DEIGIPFME   90 (144)
Q Consensus        82 ~~~~~~~~~   90 (144)
                      +..+.+++.
T Consensus       185 ~~~~~~~~~  193 (232)
T d1hyqa_         185 AILEAKVIG  193 (232)
T ss_dssp             HHTTSCEEE
T ss_pred             hhcCCeEEE
Confidence            556666543

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=80.18  E-value=0.37  Score=32.60  Aligned_cols=39  Identities=18%  Similarity=0.190  Sum_probs=24.4

Q ss_pred             CcEEEEEeCCCCCCCcccCHHHHHHHHHHcCCcEEEeecCC
Q 032243           55 VNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKD   95 (144)
Q Consensus        55 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~   95 (144)
                      .|+++++||.|......  .+.........+..++++|+..
T Consensus       215 kP~~~v~Nk~d~~~~e~--~~~~~~~~~~~~~~vi~~sa~~  253 (319)
T d1wxqa1         215 KPMVIAANKADAASDEQ--IKRLVREEEKRGYIVIPTSAAA  253 (319)
T ss_dssp             SCEEEEEECGGGSCHHH--HHHHHHHHHHTTCEEEEECHHH
T ss_pred             CchhhhcccccchhhHH--HHHHHHHHhhcCCEEEEecHHH
Confidence            78899999988632211  2333344556667778887663