Citrus Sinensis ID: 032248

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
Protein Sequence
MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSYG
Secondary Structure (PSIPRED)
cHHHHHHHHcccccEEEEEEcccccccccccccccccEEEEEEEcccEEEEEEEccccEEEEEccccccEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccEEEEEEccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHccccccEEEEEcccEEccccccEcccccEEEEEEEcccEEEEEEEccccEEEEEEcccccEEEEEEccccccccccccccccccccccccHHHccccHHHHHHHHHHHHccccccccEEEEEHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mrnkvsemsgrdaEVVRVVVspyricplgahidhqggtvsAMTINKGIllgfvpsgdtEVVLRsgqfdgevrfsideiqqprnsvkkhhvvhasdsakikeeckwgnyARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSYG
Flexible Loop (DISEMBL)
mrnkvsemsgrdaevVRVVVSPYRICPLGahidhqggtVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDeiqqprnsvkkhhvvhasdsakikeecKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSYG
Low Complexity Region (SEG)
MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSYG
Disordered region (IsUnstruct)
*************EVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEI**********HVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALS**
Disordered Region (DISOPRED)
*RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSYG
Disordered Region (DISEMBL)
************AEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQP***************AKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSYG
Disordered Region (DISPRO)
MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQP***************AKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSYG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSYG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	144	2.2.26 [Sep-21-2011]
Q8VYG2	424	Galacturonokinase OS=Arab	yes	no	0.847	0.287	0.664	4e-41
Q00052	388	Galactokinase OS=Lactobac	yes	no	0.590	0.219	0.300	4e-05
A5UZX0	391	Galactokinase OS=Roseifle	yes	no	0.645	0.237	0.247	0.0001
Q9KDV4	395	Galactokinase OS=Bacillus	yes	no	0.708	0.258	0.272	0.0001
Q8R8R7	390	Galactokinase OS=Thermoan	yes	no	0.673	0.248	0.25	0.0002

>sp|Q8VYG2|GALAK_ARATH Galacturonokinase OS=Arabidopsis thaliana GN=GALAK PE=1 SV=1

 Score =  166 bits (420), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 83/125 (66%), Positives = 95/125 (76%), Gaps = 3/125 (2%)

Query: 1   MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
           ++  V++MSGRD   VRVVV+PYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDT+V
Sbjct: 12  IKEAVAQMSGRDKGEVRVVVAPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTQV 71

Query: 61  VLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRG 120
            LRS QF+GEV F +DEIQ P     K+    AS  +  KE+  WG YARGA+YALQS  
Sbjct: 72  QLRSAQFEGEVCFRVDEIQHPIGLANKN---GASTPSPSKEKSIWGTYARGAVYALQSSK 128

Query: 121 NNLTQ 125
            NL Q
Sbjct: 129 KNLKQ 133

Sugar-1-kinase with a strict substrate specificity for the alpha-anomeric configuration of D-galacturonic acid (D-GalA) and ATP. Involved in the biosynthesis of UDP-galacturonic acid (UDP-GalA) from the salvaged GalA that is released during growth-dependent cell wall restructuring.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 4EC: 4

>sp|Q00052|GAL1_LACHE Galactokinase OS=Lactobacillus helveticus GN=galK PE=3 SV=1

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 18/103 (17%)

Query: 18  VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGE-VRFSID 76
           V  SP RI  +G H D+ GG V    I+ G+   + P  D +V L SG  DG+ V F ID
Sbjct: 21  VFFSPGRINVIGEHTDYNGGHVFPAPISLGVYGVYGPRDDKKVRLYSGNVDGDIVEFDID 80

Query: 77  EIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSR 119
           +    ++                 E+  W NY +G +  L+ +
Sbjct: 81  DTNVEKD-----------------EDRFWANYFKGMITYLREK 106

Lactobacillus helveticus (taxid: 1587)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 6

>sp|A5UZX0|GAL1_ROSS1 Galactokinase OS=Roseiflexus sp. (strain RS-1) GN=galK PE=3 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 20/113 (17%)

Query: 18  VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDE 77
           +V +P R+  +G H D+  G V  + I++   +   P  D  V + +     E  FSID+
Sbjct: 22  IVRAPGRVNLIGEHTDYNDGFVFPVAIDRATCVAARPRTDRIVRVMAADLHDEDLFSIDQ 81

Query: 78  IQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFL 130
           I++   +                    W NY RG + AL++ G+ L+   M +
Sbjct: 82  IERSNRA--------------------WHNYIRGVVLALRTAGHTLSGADMLI 114

Roseiflexus sp. (strain RS-1) (taxid: 357808)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 6

>sp|Q9KDV4|GAL1_BACHD Galactokinase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=galK PE=3 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 47/121 (38%), Gaps = 19/121 (15%)

Query: 16  VRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSI 75
           VRV  +P R+  +G H D+ GG V    +  G  +      D E  LRS  FD  V F  
Sbjct: 25  VRVFFAPGRVNLIGEHTDYNGGYVFPGALTNGTYMVIKLRDDGEYHLRSANFDTSVVF-- 82

Query: 76  DEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFM 135
                 RNS             +   +  WGNY +G +  L   G +L    ++   +  
Sbjct: 83  ------RNS-----------DLRFDPKDDWGNYPKGIIAELAKLGVDLPGATIYFYGNIP 125

Query: 136 N 136
           N
Sbjct: 126 N 126

Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 6

>sp|Q8R8R7|GAL1_THETN Galactokinase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=galK PE=3 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 19/116 (16%)

Query: 5   VSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRS 64
           + +  G+    +R+  SP R+  +G H D+ GG V    ++ G         D +V + S
Sbjct: 9   LEKFYGKSDREIRLFYSPGRVNLIGEHTDYNGGYVFPCALDFGTYAAIRKRDDKKVFMAS 68

Query: 65  GQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRG 120
             FD +V   +D I   +                   E  W NY +G L  LQ  G
Sbjct: 69  LNFDLKVEVDLDSIFYDK-------------------EHDWANYPKGVLKILQEEG 105

Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
372995399	431	GALK [Morus alba var. multicaulis]	0.868	0.290	0.704	6e-46
225462522	436	PREDICTED: galacturonokinase [Vitis vini	0.868	0.286	0.688	2e-45
224090463	413	predicted protein [Populus trichocarpa]	0.902	0.314	0.590	8e-43
356513221	431	PREDICTED: galacturonokinase-like [Glyci	0.819	0.273	0.658	2e-42
255546650	431	galactokinase, putative [Ricinus communi	0.861	0.287	0.682	7e-42
357520679	308	Galactokinase [Medicago truncatula] gi|3	0.868	0.405	0.648	1e-41
357520677	437	Galactokinase [Medicago truncatula] gi|3	0.868	0.286	0.648	1e-41
22330971	424	galactokinase [Arabidopsis thaliana] gi|	0.847	0.287	0.664	3e-39
297833852	424	GHMP kinase family protein [Arabidopsis	0.847	0.287	0.656	5e-39
356527722	933	PREDICTED: uncharacterized protein LOC10	0.826	0.127	0.6	6e-38

>gi|372995399|gb|AEY11272.1| GALK [Morus alba var. multicaulis]

 Score =  188 bits (478), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 88/125 (70%), Positives = 106/125 (84%)

Query: 1   MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
           +R  VS+M+GR  E VRVV SPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGD++V
Sbjct: 15  VREIVSKMAGRGTEEVRVVASPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDSQV 74

Query: 61  VLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRG 120
           VLRSGQF GEVRFS+DE Q   ++   ++ + A+DS+KI++EC WGNY RGALYALQ +G
Sbjct: 75  VLRSGQFKGEVRFSVDEAQDSGHANAMNNKIDANDSSKIRDECNWGNYPRGALYALQRKG 134

Query: 121 NNLTQ 125
           N+L+Q
Sbjct: 135 NHLSQ 139

Source: Morus alba var. multicaulis

Species: Morus alba

Genus: Morus

Family: Moraceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462522|ref|XP_002264528.1| PREDICTED: galacturonokinase [Vitis vinifera] gi|296090474|emb|CBI40670.3| unnamed protein product [Vitis vinifera]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/125 (68%), Positives = 107/125 (85%)

Query: 1   MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
           +R  V+EM+GR+++ VRVVVSPYRICPLGAHIDHQGG VSA+T+NKGILLGF+PSGD++V
Sbjct: 15  VRKVVAEMAGRNSKEVRVVVSPYRICPLGAHIDHQGGVVSAVTVNKGILLGFIPSGDSQV 74

Query: 61  VLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRG 120
           +L+SGQF GEVRF +DEIQ PR+S  K+  +  + S+K KEEC WG YARGALYALQSR 
Sbjct: 75  LLQSGQFKGEVRFRVDEIQHPRHSALKNDKIITNGSSKSKEECDWGRYARGALYALQSRE 134

Query: 121 NNLTQ 125
           N+L+Q
Sbjct: 135 NHLSQ 139

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090463|ref|XP_002308990.1| predicted protein [Populus trichocarpa] gi|222854966|gb|EEE92513.1| predicted protein [Populus trichocarpa]

 Score =  178 bits (451), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 91/154 (59%), Positives = 109/154 (70%), Gaps = 24/154 (15%)

Query: 1   MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
           ++  VS M+GR  E VRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGF+PS DTEV
Sbjct: 5   IKEIVSAMAGRGPEEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFIPSDDTEV 64

Query: 61  VLRSGQFDGEVRFS----------------------IDEIQQPRNSVKKHHVVHASDSAK 98
           +LRSGQF GEVRF                       +DE+QQPR  ++K    HA+DS K
Sbjct: 65  ILRSGQFKGEVRFRLPFHLSFPRGPLHHQTIKSNRIVDEVQQPR-PIRKKGESHATDSPK 123

Query: 99  IKEECKWGNYARGALYALQSRGNNLTQ-VKMFLC 131
           ++E   WGN+ARGA+YALQSRG +LTQ +  ++C
Sbjct: 124 LQEAGNWGNFARGAVYALQSRGISLTQGITGYIC 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513221|ref|XP_003525312.1| PREDICTED: galacturonokinase-like [Glycine max]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 83/126 (65%), Positives = 105/126 (83%), Gaps = 8/126 (6%)

Query: 1   MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
           +R +VS++   + E VRVVVSPYRICPLGAHIDHQGGTV+AMTINKGILLGF PSG  +V
Sbjct: 15  LRERVSKIVDLNKEEVRVVVSPYRICPLGAHIDHQGGTVAAMTINKGILLGFAPSGSNQV 74

Query: 61  VLRSGQFDGEVRFSIDEIQQPRN-SVKKHHVVHASDSAKIKEECKWGNYARGALYALQSR 119
           V+RSGQF+GEV+F +DEIQQP++ S+ K       DS++++E+C WG YARGA+YALQSR
Sbjct: 75  VIRSGQFEGEVKFRVDEIQQPKDKSLDK-------DSSELQEQCNWGRYARGAVYALQSR 127

Query: 120 GNNLTQ 125
           GNNL++
Sbjct: 128 GNNLSK 133

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546650|ref|XP_002514384.1| galactokinase, putative [Ricinus communis] gi|223546481|gb|EEF47980.1| galactokinase, putative [Ricinus communis]

 Score =  175 bits (443), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 86/126 (68%), Positives = 100/126 (79%), Gaps = 2/126 (1%)

Query: 1   MRNKVSEMS-GRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTE 59
           +R  VS MS G   E VRVVVSPYRICPLGAHIDHQGG VSAMTINKG+LLGFVPSGD +
Sbjct: 17  IREVVSAMSSGTSPEQVRVVVSPYRICPLGAHIDHQGGIVSAMTINKGVLLGFVPSGDPQ 76

Query: 60  VVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSR 119
           V+LRS QF GEVRFS+DE+Q  R  + K     A+DS K++E+  WGN+ARGALYALQSR
Sbjct: 77  VILRSAQFRGEVRFSVDEVQYSR-PIGKKDENRATDSQKVREDSNWGNFARGALYALQSR 135

Query: 120 GNNLTQ 125
           GN++ Q
Sbjct: 136 GNSIIQ 141

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520679|ref|XP_003630628.1| Galactokinase [Medicago truncatula] gi|355524650|gb|AET05104.1| Galactokinase [Medicago truncatula]

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/125 (64%), Positives = 100/125 (80%)

Query: 1   MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
           MR KVS+M+    E VRVVVSPYRICPLGAHIDHQGGTV AMTINKGILLGF PSG  E 
Sbjct: 15  MREKVSQMAKVKKEDVRVVVSPYRICPLGAHIDHQGGTVLAMTINKGILLGFTPSGSDEF 74

Query: 61  VLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRG 120
           V+RSGQF GEV+F +D+IQQP  + K  +   A +S++ +E+C WG YARGA+YALQ+RG
Sbjct: 75  VIRSGQFQGEVKFRVDDIQQPVQTTKIKNDNMAENSSEPQEQCNWGRYARGAVYALQNRG 134

Query: 121 NNLTQ 125
           +N+++
Sbjct: 135 HNISK 139

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520677|ref|XP_003630627.1| Galactokinase [Medicago truncatula] gi|355524649|gb|AET05103.1| Galactokinase [Medicago truncatula]

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/125 (64%), Positives = 100/125 (80%)

Query: 1   MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
           MR KVS+M+    E VRVVVSPYRICPLGAHIDHQGGTV AMTINKGILLGF PSG  E 
Sbjct: 15  MREKVSQMAKVKKEDVRVVVSPYRICPLGAHIDHQGGTVLAMTINKGILLGFTPSGSDEF 74

Query: 61  VLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRG 120
           V+RSGQF GEV+F +D+IQQP  + K  +   A +S++ +E+C WG YARGA+YALQ+RG
Sbjct: 75  VIRSGQFQGEVKFRVDDIQQPVQTTKIKNDNMAENSSEPQEQCNWGRYARGAVYALQNRG 134

Query: 121 NNLTQ 125
           +N+++
Sbjct: 135 HNISK 139

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22330971|ref|NP_187681.2| galactokinase [Arabidopsis thaliana] gi|75304441|sp|Q8VYG2.1|GALAK_ARATH RecName: Full=Galacturonokinase; AltName: Full=D-galacturonic acid-1-P kinase gi|18175773|gb|AAL59925.1| putative galactokinase [Arabidopsis thaliana] gi|20465755|gb|AAM20366.1| putative galactokinase [Arabidopsis thaliana] gi|215276406|gb|ACJ65066.1| D-galacturonic acid-1-P kinase [Arabidopsis thaliana] gi|332641423|gb|AEE74944.1| galactokinase [Arabidopsis thaliana]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 83/125 (66%), Positives = 95/125 (76%), Gaps = 3/125 (2%)

Query: 1   MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
           ++  V++MSGRD   VRVVV+PYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDT+V
Sbjct: 12  IKEAVAQMSGRDKGEVRVVVAPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTQV 71

Query: 61  VLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRG 120
            LRS QF+GEV F +DEIQ P     K+    AS  +  KE+  WG YARGA+YALQS  
Sbjct: 72  QLRSAQFEGEVCFRVDEIQHPIGLANKN---GASTPSPSKEKSIWGTYARGAVYALQSSK 128

Query: 121 NNLTQ 125
            NL Q
Sbjct: 129 KNLKQ 133

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833852|ref|XP_002884808.1| GHMP kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297330648|gb|EFH61067.1| GHMP kinase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  165 bits (418), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 82/125 (65%), Positives = 95/125 (76%), Gaps = 3/125 (2%)

Query: 1   MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
           ++  V++MSGRD   VRVVV+PYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDT+V
Sbjct: 12  IKEAVAQMSGRDKGEVRVVVAPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTQV 71

Query: 61  VLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRG 120
            LRS QF+GEV F +DEIQ P     K+    AS  +  KE+  WG YARGA+YALQ+  
Sbjct: 72  QLRSAQFEGEVCFRVDEIQHPIGLANKN---GASTPSPSKEKSIWGTYARGAVYALQTSK 128

Query: 121 NNLTQ 125
            NL Q
Sbjct: 129 KNLKQ 133

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527722|ref|XP_003532457.1| PREDICTED: uncharacterized protein LOC100793652 [Glycine max]

 Score =  162 bits (409), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 75/125 (60%), Positives = 98/125 (78%), Gaps = 6/125 (4%)

Query: 1   MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
           +R +VS++   + E VRVVVSPYRICPLGAHIDHQGG VSAMTIN G+LLGF PSG  +V
Sbjct: 15  LRERVSKIGDLNKEEVRVVVSPYRICPLGAHIDHQGGIVSAMTINMGVLLGFAPSGSNQV 74

Query: 61  VLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRG 120
           V+RSGQF+GEV+F +DEIQ+P++           DS++++E+C WG YARGA+YAL+S G
Sbjct: 75  VIRSGQFEGEVKFRVDEIQKPKDKNLD------KDSSELQEQCNWGRYARGAVYALKSSG 128

Query: 121 NNLTQ 125
           N L++
Sbjct: 129 NILSK 133

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
TAIR|locus:2075730	424	GalAK "galacturonic acid kinas	0.847	0.287	0.664	8.9e-38

TAIR|locus:2075730 GalAK "galacturonic acid kinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 83/125 (66%), Positives = 95/125 (76%)

Query:     1 MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
             ++  V++MSGRD   VRVVV+PYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDT+V
Sbjct:    12 IKEAVAQMSGRDKGEVRVVVAPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTQV 71

Query:    61 VLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRG 120
              LRS QF+GEV F +DEIQ P     K+    AS  +  KE+  WG YARGA+YALQS  
Sbjct:    72 QLRSAQFEGEVCFRVDEIQHPIGLANKNG---ASTPSPSKEKSIWGTYARGAVYALQSSK 128

Query:   121 NNLTQ 125
              NL Q
Sbjct:   129 KNLKQ 133


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.410    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      144       144   0.00091  102 3  11 22  0.42    31
                                                     30  0.48    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  587 (62 KB)
  Total size of DFA:  138 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.47u 0.14s 13.61t   Elapsed:  00:00:01
  Total cpu time:  13.47u 0.14s 13.61t   Elapsed:  00:00:01
  Start:  Fri May 10 23:07:44 2013   End:  Fri May 10 23:07:45 2013

GO:0004335 "galactokinase activity" evidence=IEA;ISS;IDA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006012 "galactose metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0046835 "carbohydrate phosphorylation" evidence=IEA;IDA

GO:0046396 "D-galacturonate metabolic process" evidence=IDA

GO:0047912 "galacturonokinase activity" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	144
PLN02865	423	PLN02865, PLN02865, galactokinase	3e-63
COG0153	390	COG0153, GalK, Galactokinase [Carbohydrate transpo	9e-10
PRK05322	387	PRK05322, PRK05322, galactokinase; Provisional	3e-07
PRK03817	351	PRK03817, PRK03817, galactokinase; Provisional	2e-05
TIGR00131	386	TIGR00131, gal_kin, galactokinase	4e-05
PRK05101	382	PRK05101, PRK05101, galactokinase; Provisional	0.003

>gnl|CDD|215466 PLN02865, PLN02865, galactokinase

 Score =  198 bits (506), Expect = 3e-63
 Identities = 85/125 (68%), Positives = 99/125 (79%), Gaps = 10/125 (8%)

Query: 1   MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
           +R +V+ MSGR++  VRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGD EV
Sbjct: 15  IRERVAAMSGRNSGEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDPEV 74

Query: 61  VLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRG 120
           +LRS QF+GEVRF +DEIQ P            + S+  KEE  WG+YARGA+YALQSRG
Sbjct: 75  LLRSAQFEGEVRFRVDEIQHPIA----------NVSSDSKEESNWGDYARGAVYALQSRG 124

Query: 121 NNLTQ 125
           + L+Q
Sbjct: 125 HALSQ 129

Length = 423

>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism]

 Score = 55.0 bits (133), Expect = 9e-10
 Identities = 31/118 (26%), Positives = 42/118 (35%), Gaps = 17/118 (14%)

Query: 12  DAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEV 71
             E      +P R+  +G H D+ GG V    IN G  +      D +V L S  F    
Sbjct: 19  YVEPTVTAFAPGRVNLIGEHTDYNGGFVLPCAINYGTYVAVAKRDDGKVRLYSANFG--- 75

Query: 72  RFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMF 129
                                  D AK K +  W NY +G + ALQ RG   T + + 
Sbjct: 76  -------------NAGDIFFLLLDIAKEKID-DWANYVKGVIKALQKRGYAFTGLDIV 119

Length = 390

>gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional

 Score = 47.5 bits (114), Expect = 3e-07
 Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 23/125 (18%)

Query: 1   MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
           ++ K +E+ G +AE   V  SP RI  +G H D+ GG V    I  G         D +V
Sbjct: 6   LKKKFAEVFGEEAE--DVFFSPGRINLIGEHTDYNGGHVFPAAITLGTYGAARKRDDKKV 63

Query: 61  VLRSGQFD--GEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQS 118
            L S  F+  G + F +D++     S  K                 W NY +G L  LQ 
Sbjct: 64  RLYSANFEDLGIIEFDLDDL-----SFDKED--------------DWANYPKGVLKFLQE 104

Query: 119 RGNNL 123
            G  +
Sbjct: 105 AGYKI 109

Length = 387

>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 23/113 (20%)

Query: 18  VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDE 77
            V SP R+  +G H D+  G V    IN    L    S   + +  S  F+ E  F +D 
Sbjct: 2   KVKSPGRVNLIGEHTDYNDGYVLPFAINLYTFLEIEKSE--KFIFYSENFNEEKTFELD- 58

Query: 78  IQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFL 130
                               K+++   W +Y +G ++ L+ RG  +  VK  +
Sbjct: 59  --------------------KLEKLNSWADYIKGVIWVLEKRGYEVGGVKGKV 91

Length = 351

>gnl|CDD|232841 TIGR00131, gal_kin, galactokinase

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 19/109 (17%)

Query: 18  VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEV-RFSID 76
              +P R+  +G H D+  G+V    I+ G L       D  V +     D +    S+D
Sbjct: 19  TARAPGRVNLIGEHTDYNDGSVLPCAIDFGTLCAVAVRDDKNVRIYLANADNKFAERSLD 78

Query: 77  EIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQ 125
               P +                 E   W NY +G L+  Q R N+   
Sbjct: 79  L---PLDG---------------SEVSDWANYFKGVLHVAQERFNSFPL 109

Galactokinase is a member of the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase) and shares with them an amino-terminal domain probably related to ATP binding.The galactokinases found by This model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity [Energy metabolism, Sugars]. Length = 386

>gnl|CDD|179937 PRK05101, PRK05101, galactokinase; Provisional

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 19/112 (16%)

Query: 18  VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEV-RFSID 76
            + +P R+  +G H D+  G V    I+   ++      D  V + +  +D +   FS+D
Sbjct: 22  TIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAKRDDRIVRVIAADYDNQQDEFSLD 81

Query: 77  EIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKM 128
               P                    E +W NY RG +  LQ R  +     +
Sbjct: 82  APIVPH------------------PEQQWANYVRGVVKHLQERNPDFGGADL 115

Length = 382

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	144
PLN02865	423	galactokinase	100.0
COG0153	390	GalK Galactokinase [Carbohydrate transport and met	100.0
PTZ00290	468	galactokinase; Provisional	99.97
PRK05322	387	galactokinase; Provisional	99.96
PLN02521	497	galactokinase	99.95
PRK05101	382	galactokinase; Provisional	99.95
TIGR00131	386	gal_kin galactokinase. The galactokinases found by	99.95
PRK00555	363	galactokinase; Provisional	99.94
PF10509	52	GalKase_gal_bdg: Galactokinase galactose-binding s	99.94
KOG0631	489	consensus Galactokinase [Carbohydrate transport an	99.92
PRK03817	351	galactokinase; Provisional	99.84
PRK13412	974	fkp bifunctional fucokinase/L-fucose-1-P-guanylylt	99.8
TIGR00549	273	mevalon_kin mevalonate kinase. Paracoccus exhibits	99.79
TIGR01220	358	Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-typ	99.66
PRK03926	302	mevalonate kinase; Provisional	99.52
PLN02677	387	mevalonate kinase	99.43
TIGR00154	293	ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kin	99.35
PRK02534	312	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.13
PRK00128	286	ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin	99.05
COG1577	307	ERG12 Mevalonate kinase [Lipid metabolism]	98.21
KOG1511	397	consensus Mevalonate kinase MVK/ERG12 [Lipid trans	98.16
PRK00343	271	ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin	98.04
PTZ00298	328	mevalonate kinase; Provisional	97.71
COG2605	333	Predicted kinase related to galactokinase and meva	97.58
PRK14611	275	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	95.86
PRK14608	290	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	95.31
PRK14615	296	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	94.2
PRK14612	276	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	93.85
TIGR01920	261	Shik_kin_archae shikimate kinase. This model repre	93.43
PRK14609	269	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	93.26
PRK14610	283	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	92.68
KOG4644	948	consensus L-fucose kinase [Carbohydrate transport	92.28
PRK14616	287	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	92.13
PRK01123	282	shikimate kinase; Provisional	89.99
PLN02451	370	homoserine kinase	89.96
PRK05905	258	hypothetical protein; Provisional	89.5
PRK14613	297	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	86.3
PRK04181	257	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	85.38
PRK03188	300	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	84.37
PRK00650	288	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	81.98
PTZ00299	336	homoserine kinase; Provisional	81.93
TIGR01219	454	Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type,	80.93
COG1947	289	IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-p	80.26

>PLN02865 galactokinase

Probab=100.00  E-value=9.3e-35  Score=249.65  Aligned_cols=132  Identities=66%  Similarity=0.985  Sum_probs=108.3

Q ss_pred             hhHhhhhhCCCCceeEEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccc
Q 032248            2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQP   81 (144)
Q Consensus         2 ~~~F~~~fG~~p~~~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~   81 (144)
                      .+.|++.||.+|+...+++|||||||||||||||||+|||||||++|+++++|++|++++|.|.++++..+|++++...+
T Consensus        16 ~~~F~~~fg~~p~~~~~~~APGRVnlIGEHtDYngG~VLp~AI~~~~~va~~~~~~~~i~v~s~~~~~~~~~~~~~~~~~   95 (423)
T PLN02865         16 RERVAAMSGRNSGEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDPEVLLRSAQFEGEVRFRVDEIQHP   95 (423)
T ss_pred             HHHHHHHhCCCcccceEEEcCcceecccccccCCCCeEEeEEeeccEEEEEEECCCCEEEEEECCCCCceEEeccccccc
Confidence            57899999999963247999999999999999999999999999999999999999999999999875567777643111


Q ss_pred             cccccccccccccccccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccC-CCCCCccC
Q 032248           82 RNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFM-NHLFALSY  143 (144)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~-p~~~~~~~  143 (144)
                      ..     .     ..-...+..+|+||++|+++.|++.|....+|||++|+|+| |.++|||-
T Consensus        96 ~~-----~-----~~~~~~~~~~W~~Yv~gv~~~l~~~g~~~~~G~~~~v~g~vpP~gsGLsS  148 (423)
T PLN02865         96 IA-----N-----VSSDSKEESNWGDYARGAVYALQSRGHALSQGITGYISGSEGLDSSGLSS  148 (423)
T ss_pred             cc-----c-----ccccCCCCCCHHHHHHHHHHHHHHcCCCCCCceEEEEECCCCCCCCcccH
Confidence            00     0     00011355789999999999999988876579999999999 68999983

>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.5e-34  Score=244.11  Aligned_cols=119  Identities=27%  Similarity=0.348  Sum_probs=103.7

Q ss_pred             hHhhhhhCC-CCceeEEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCC-ceEEe-cCccc
Q 032248            3 NKVSEMSGR-DAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG-EVRFS-IDEIQ   79 (144)
Q Consensus         3 ~~F~~~fG~-~p~~~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~-~~~~~-l~~l~   79 (144)
                      ..|.+.|+. +|+  .+++|||||||||||||||||+|||||||.+|++++++|+|.+++++|.+++. ...+. .+++.
T Consensus        11 ~~f~~~f~~~~~~--~~~~aPGRvNLIGEHtDYn~G~VlP~Ain~~t~v~v~~r~d~~v~l~s~n~~~~~~~~~~~~d~~   88 (390)
T COG0153          11 ALFAEHFGYVEPT--VTAFAPGRVNLIGEHTDYNGGFVLPCAINYGTYVAVAKRDDGKVRLYSANFGNAGDIFFLLLDIA   88 (390)
T ss_pred             HHHHHHhcccCcc--eEecCCceEEeeccceeccCceEEEEEeecceEEEEEEccCceEEEEeCCCccccceeecchhhc
Confidence            568888886 776  68999999999999999999999999999999999999999999999999983 33333 34432


Q ss_pred             cccccccccccccccccccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248           80 QPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~  143 (144)
                      .                   .+..+|+||++|+++.|+.+|+..+ |+|++|.||||.++|||-
T Consensus        89 ~-------------------~~~~~W~nYvkgvi~~l~~~g~~~~-G~~i~i~gnIP~GaGLSS  132 (390)
T COG0153          89 K-------------------EKIDDWANYVKGVIKALQKRGYAFT-GLDIVISGNIPIGAGLSS  132 (390)
T ss_pred             c-------------------cccchhhhhHHHHHHHHHhcCCCcC-CeeEEEecCCCCCCCcCc
Confidence            1                   2458999999999999999999986 999999999999999983

>PTZ00290 galactokinase; Provisional

Probab=99.97  E-value=1.4e-30  Score=226.20  Aligned_cols=121  Identities=19%  Similarity=0.260  Sum_probs=96.5

Q ss_pred             hhHhhhhhCCCCce----eEEEEccceeeccccccccCCceEEeeeecceEEEEEEec---CCCeEEEEeCCCCCceEEe
Q 032248            2 RNKVSEMSGRDAEV----VRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPS---GDTEVVLRSGQFDGEVRFS   74 (144)
Q Consensus         2 ~~~F~~~fG~~p~~----~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~---~d~~v~i~s~~~~~~~~~~   74 (144)
                      ++.|++.||.+|+.    .++++|||||||||||||||||+|||||||++|+++++++   +++++++.+.. .+  +|+
T Consensus        19 ~~~F~~~fG~~p~~~~~~~~~~~APGRVnLIGEHtDYngG~VLp~AId~~~~va~~~~~~~~~~~i~~~~~~-~~--~~~   95 (468)
T PTZ00290         19 KPIFLETFKVENDADVEWLLFTFAPGRVNFIGEHVDYMGGYVCPAAVLEGCHILVGRVKHFCDHKLRFATET-DE--HFV   95 (468)
T ss_pred             HHHHHHHhCCCcccccceeEEEeccceeeecccccccCCCeeeeccccCcEEEEEeecCCCCCCeEEEEECC-Cc--eee
Confidence            57899999999951    1578999999999999999999999999999999999876   56789985544 32  455


Q ss_pred             cCccccccccccccccccccccccccCcCChhhHHHHHHHH-HHHcCCCC----CCcEEEEEEccCCCCCCccC
Q 032248           75 IDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYA-LQSRGNNL----TQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        75 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv~Gv~~~-l~~~g~~~----~~G~d~~I~g~~p~~~~~~~  143 (144)
                      ++....                  .....+|+||++|+++. +++.|...    ..|||++|.|+||-++|||-
T Consensus        96 ~~~~~~------------------~~~~~~W~nYv~gv~~~~l~~~g~~~~~~~~~G~d~~i~gdVP~GaGLSS  151 (468)
T PTZ00290         96 LDHLGG------------------AKHNKAWTTFVRGAATLRLNRLGVAIDAPSLQGVCMVVHGTLPMGAGMSA  151 (468)
T ss_pred             cCcccc------------------cCCcccHHHHHHHHHHHHHHHhCCCcccCCCCCeEEEEeCCCCCCCCcch
Confidence            543211                  12457899999999986 66577642    25999999999999999983

>PRK05322 galactokinase; Provisional

Probab=99.96  E-value=2e-28  Score=208.07  Aligned_cols=120  Identities=31%  Similarity=0.443  Sum_probs=104.4

Q ss_pred             hhHhhhhhCCCCceeEEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCC--ceEEecCccc
Q 032248            2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG--EVRFSIDEIQ   79 (144)
Q Consensus         2 ~~~F~~~fG~~p~~~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~--~~~~~l~~l~   79 (144)
                      .+.|++.||.+|+  .+++|||||||||||+||+||+|||+|||+++++++++++|+++++.|.+++.  ..+|+++++.
T Consensus         7 ~~~f~~~fg~~p~--~~~~APgRv~L~GEH~d~~g~~vl~~AI~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~~~~~~~~   84 (387)
T PRK05322          7 KKKFAEVFGEEAE--DVFFSPGRINLIGEHTDYNGGHVFPAAITLGTYGAARKRDDKKVRLYSANFEDLGIIEFDLDDLS   84 (387)
T ss_pred             HHHHHHHhCCCCc--eEEEcCceeEecccceeecCceeeeeeccceEEEEEEECCCCEEEEEECCCCCCceEEEeccccC
Confidence            4679999999998  68999999999999999999999999999999999999999999999988863  3556655432


Q ss_pred             cccccccccccccccccccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCcc
Q 032248           80 QPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALS  142 (144)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~  142 (144)
                      .                   .....|.+|++|++..|++.+.....||++.|.|+||-++|||
T Consensus        85 ~-------------------~~~~~w~~y~~gvi~~l~~~~~~~~~g~~i~i~s~iP~gsGLg  128 (387)
T PRK05322         85 F-------------------DKEDDWANYPKGVLKFLQEAGYKIDHGFDILIYGNIPNGAGLS  128 (387)
T ss_pred             C-------------------CCccchHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCcc
Confidence            1                   2456799999999999998876554699999999999999997

>PLN02521 galactokinase

Probab=99.95  E-value=3.6e-28  Score=212.49  Aligned_cols=123  Identities=22%  Similarity=0.275  Sum_probs=101.9

Q ss_pred             hhHhhhhhCCCCceeEEEEccceeeccccccccCCceEEeeeecceEEEEEEecCC-CeEEEEeCCCCC-ceEEecCccc
Q 032248            2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGD-TEVVLRSGQFDG-EVRFSIDEIQ   79 (144)
Q Consensus         2 ~~~F~~~fG~~p~~~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d-~~v~i~s~~~~~-~~~~~l~~l~   79 (144)
                      .+.|++.||.+|+  ++++|||||||||||+||+||+||||||+++++++++++++ +.+++.+.+.+. ...|+++...
T Consensus        36 ~~~F~~~fg~~p~--~~~~APGRVnLiGEHtDy~gg~vLp~AI~~~~~v~~~~~~~~~~i~i~s~~~~~~~~~~~~~~~~  113 (497)
T PLN02521         36 KAAFVEVYGAKPD--LFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRRAEGSKKLRIANVNDKYTTCTFPADPDQ  113 (497)
T ss_pred             HHHHHHHHCCCCC--EEEECCceEEEeccceeecCCeEEEEEEcCcEEEEEEEcCCCCEEEEEECCCCCCceeeecCccc
Confidence            4679999999998  78999999999999999999999999999999999999987 889999877542 3455554321


Q ss_pred             cccccccccccccccccccccCcCChhhHH----HHHHHHHHHcCCCC--CCcEEEEEEccCCCCCCccC
Q 032248           80 QPRNSVKKHHVVHASDSAKIKEECKWGNYA----RGALYALQSRGNNL--TQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv----~Gv~~~l~~~g~~~--~~G~d~~I~g~~p~~~~~~~  143 (144)
                      ..                 ......|+||+    +|++..+.+.+...  ..||++.|.|+||.++|||-
T Consensus       114 ~~-----------------~~~~~~W~nYv~~~~~gv~~~l~~~~~~~~~~~g~~i~i~s~IP~gsGLgS  166 (497)
T PLN02521        114 EV-----------------DLANHKWGNYFICGYKGVFEFLKSKGVDVGPPVGLDVVVDGTVPTGSGLSS  166 (497)
T ss_pred             cc-----------------ccccccHHHHHHHHHHHHHHHHHHhccccCCCCCeEEEEecCCCCCCCcch
Confidence            10                 12456799999    99999999877643  35999999999999999983

>PRK05101 galactokinase; Provisional

Probab=99.95  E-value=2.9e-27  Score=200.54  Aligned_cols=121  Identities=21%  Similarity=0.311  Sum_probs=103.7

Q ss_pred             hhHhhhhhCCCCceeEEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCC-ceEEecCcccc
Q 032248            2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG-EVRFSIDEIQQ   80 (144)
Q Consensus         2 ~~~F~~~fG~~p~~~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~-~~~~~l~~l~~   80 (144)
                      .+.|++.||.+|+  ++++|||||||||||+||+||.|||+|||+++++++++++++.+++.+.+++. ...++++....
T Consensus         8 ~~~f~~~fg~~p~--~~~~APgRvnL~GeH~Dy~gg~vL~~AId~~~~v~i~~~~~~~i~v~s~~~~~~~~~~~~~~~~~   85 (382)
T PRK05101          8 QSLFAQQFGYPPT--HTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAKRDDRIVRVIAADYDNQQDEFSLDAPIV   85 (382)
T ss_pred             HHHHHHHhCCCCC--eEEECCceEEEeccceeecCCEEEEEEecccEEEEEEECCCCEEEEEECCCCCCceEEecCcccc
Confidence            4689999999998  68999999999999999999999999999999999999999999999988752 34566654111


Q ss_pred             ccccccccccccccccccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248           81 PRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~  143 (144)
                                        ..+...|.||++++++.|++++... .||++.|.|+||.++|||.
T Consensus        86 ------------------~~~~~~w~~yv~~~~~~l~~~~~~~-~g~~i~i~~~iP~gaGLgS  129 (382)
T PRK05101         86 ------------------PHPEQQWANYVRGVVKHLQERNPDF-GGADLVISGNVPQGAGLSS  129 (382)
T ss_pred             ------------------cCCCCchHHHHHHHHHHHHHhCCCC-CCeEEEEeCCCCCCCCcch
Confidence                              1256789999999999998876554 5999999999999999974

>TIGR00131 gal_kin galactokinase

Probab=99.95  E-value=4e-27  Score=199.36  Aligned_cols=121  Identities=23%  Similarity=0.268  Sum_probs=103.0

Q ss_pred             hhHhhhhhCCCCceeEEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCC-ceEEecCcccc
Q 032248            2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG-EVRFSIDEIQQ   80 (144)
Q Consensus         2 ~~~F~~~fG~~p~~~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~-~~~~~l~~l~~   80 (144)
                      .+.|++.||.+|+  ++++|||||||||||+||+||.|||+|||+++++++++++++.+++.+.+++. ..+++++.. .
T Consensus         5 ~~~f~~~fg~~p~--~~~~APgrv~L~GeH~dy~g~~vl~~AI~~~~~v~~~~~~~~~i~i~~~~~~~~~~~~~~~~~-~   81 (386)
T TIGR00131         5 QKIFASAFGAKPD--FTARAPGRVNLIGEHTDYNDGSVLPCAIDFGTLCAVAVRDDKNVRIYLANADNKFAERSLDLP-L   81 (386)
T ss_pred             HHHHHHHHCCCCC--EEEECCcceEeeccceeeCCceEEeeEeeccEEEEEEECCCCeEEEEECCCCCcceEEECCCC-C
Confidence            5789999999998  78999999999999999999999999999999999999999999999888753 334444421 1


Q ss_pred             ccccccccccccccccccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCcc
Q 032248           81 PRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALS  142 (144)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~  142 (144)
                      .                 ......|.+|+++++..+++.+.....||++.|.|+||.++|||
T Consensus        82 ~-----------------~~~~~~w~~y~~~~~~~~~~~~~~~~~g~~i~i~s~iP~gsGLg  126 (386)
T TIGR00131        82 D-----------------GSEVSDWANYFKGVLHVAQERFNSFPLGADIVCSGNVPTGSGLS  126 (386)
T ss_pred             C-----------------CCCCCCcHhHHHHHHHHHHHhcCCCCCceEEEEECCCCCCCCcc
Confidence            1                 12347899999999999998776555699999999999999997

The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.

>PRK00555 galactokinase; Provisional

Probab=99.94  E-value=1.4e-26  Score=195.44  Aligned_cols=105  Identities=23%  Similarity=0.368  Sum_probs=92.5

Q ss_pred             EEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccccccc
Q 032248           17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS   96 (144)
Q Consensus        17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~   96 (144)
                      ++++|||||||||||+|||||+|||+|||++++++++|++|+++++.+.+++...+++++..  +               
T Consensus         3 ~~~~APGRv~LiGEH~dy~~g~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~~~~~--~---------------   65 (363)
T PRK00555          3 VRYAAPGRINLIGEHTDYNLGFALPIALPQRTVVTFTPEHTDAITASSDRADGSARIPLDTT--P---------------   65 (363)
T ss_pred             EEEEcCceEEeecccccCCCCeEEeEEeeccEEEEEEECCCCEEEEEECCCCCceEEecCCC--C---------------
Confidence            47899999999999999999999999999999999999999999999988876666665532  1               


Q ss_pred             ccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCcc
Q 032248           97 AKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALS  142 (144)
Q Consensus        97 ~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~  142 (144)
                         .....|++|++|++..|++.|... .|+++.|.|+||.++|||
T Consensus        66 ---~~~~~w~~y~~gv~~~l~~~g~~~-~g~~i~i~s~iP~g~GLg  107 (363)
T PRK00555         66 ---GQVTGWAAYAAGVIWALRGAGHPV-PGGAMSITSDVEIGSGLS  107 (363)
T ss_pred             ---CCCcchHHHHHHHHHHHHHcCCCC-CCeEEEEecCCCCCCCcc
Confidence               134689999999999999988755 599999999999999997

>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry []

Probab=99.94  E-value=4.8e-27  Score=148.57  Aligned_cols=52  Identities=27%  Similarity=0.461  Sum_probs=44.3

Q ss_pred             hhHhhhhhCCCCceeEEEEccceeeccccccccCCceEEeeeecceEEEEEEec
Q 032248            2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPS   55 (144)
Q Consensus         2 ~~~F~~~fG~~p~~~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~   55 (144)
                      ++.|++.||.+|+  .+++|||||||||||||||||.||||||+++|++++++|
T Consensus         1 ~~~F~~~fg~~p~--~~~~APGRvnliGeHtDy~gG~Vl~~Ai~~~~~~a~~~r   52 (52)
T PF10509_consen    1 KEEFEEFFGEEPE--VVASAPGRVNLIGEHTDYNGGFVLPAAIDLRTYVAVSPR   52 (52)
T ss_dssp             -HHHHHHHSS--S--EEEEEEEEEEEE-TT-GGGT-EEEEEEEEEEEEEEEEEE
T ss_pred             ChhHHHHhCCCCC--EEEECCceEEecCcccccCCCeEEEEEeeccEEEEEEcC
Confidence            4789999999998  689999999999999999999999999999999999986

The function of this domain appears to be to bind galactose [], and it is normally located at the N terminus of these enzymes []. It is associated with IPR013750 from INTERPRO and IPR006204 from INTERPRO. While all enzymes in this entry posses galactokinase activity, some are annotated as N-acetylgalactosamine kinases as they also posses this enzyme activity.; PDB: 1PIE_A 1WUU_A 1S4E_D 2A2C_A 2A2D_A 2AJ4_A 2DEJ_A 2CZ9_A 2DEI_A 3V5R_A ....

>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]

Probab=99.92  E-value=3e-25  Score=191.17  Aligned_cols=123  Identities=24%  Similarity=0.258  Sum_probs=96.6

Q ss_pred             hHhhhhhCCCCceeEEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCC---ceEEecCccc
Q 032248            3 NKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG---EVRFSIDEIQ   79 (144)
Q Consensus         3 ~~F~~~fG~~p~~~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~---~~~~~l~~l~   79 (144)
                      ..|.+.||.+|+  ++++||||||||||||||+|+.|||||||.++++++++++|..++|...||+.   ..++.++.. 
T Consensus        28 ~~~~~~~~~kp~--~~a~~PgRVnLiGEHiDy~~~sVlpmaid~~~l~~~~~~~d~~~sl~~tN~~~~f~~~~~~~p~~-  104 (489)
T KOG0631|consen   28 GAFQAAYGAKPV--FVARAPGRVNLIGEHIDYCGYSVLPMAIDVDTLIAVAPSDDGIVSLRLTNFNPDFIYFKYPLPSI-  104 (489)
T ss_pred             HHHHHhhCCCce--EEEecCCceecccceeeecCceeeeEEeeeeeEEEEEEcCCCceeEEEecCCCccceeeccCCch-
Confidence            478899999998  79999999999999999999999999999999999999999997777777763   234444431 


Q ss_pred             cccccccccccccccccccccCcCChhhHH----HHHHHHHHHcCCCC--CCcEEEEEEccCCCCCCccC
Q 032248           80 QPRNSVKKHHVVHASDSAKIKEECKWGNYA----RGALYALQSRGNNL--TQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv----~Gv~~~l~~~g~~~--~~G~d~~I~g~~p~~~~~~~  143 (144)
                      ..               ......+.|.||+    +|+...++.++...  +.|++++++|++|-+.|||-
T Consensus       105 ~~---------------~I~~~~~~w~ny~~C~~~g~h~~~~~~~~~~~~~vGl~~l~~g~vPtgsgLsS  159 (489)
T KOG0631|consen  105 VW---------------QIDPDVSKWENYFYCGMKGFHEYIKRKPVRFEPPVGLSILNDGSVPTGSGLSS  159 (489)
T ss_pred             hc---------------ccCCCccchhhhhccchHHHHHHHhccccccCCCcceEEEecCCCCCCCCcch
Confidence            01               1124678999999    56655553333222  35999999999999999983

>PRK03817 galactokinase; Provisional

Probab=99.84  E-value=2.2e-20  Score=156.25  Aligned_cols=102  Identities=25%  Similarity=0.379  Sum_probs=87.4

Q ss_pred             EEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccccccccc
Q 032248           18 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSA   97 (144)
Q Consensus        18 v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~   97 (144)
                      .++|||||||+|||+||+||+||+||||+++++.++++  +.+++.+.+++...+++++++.                  
T Consensus         2 ~~~APgrv~L~Geh~d~~~g~~l~~aI~~~~~v~~~~~--~~~~i~~~~~~~~~~~~~~~~~------------------   61 (351)
T PRK03817          2 KVKSPGRVNLIGEHTDYNDGYVLPFAINLYTFLEIEKS--EKFIFYSENFNEEKTFELDKLE------------------   61 (351)
T ss_pred             EEEeeeeEEEeccceeeCCCeEEEEEecCcEEEEEEeC--CeEEEEECCCCCcEEEeCCccC------------------
Confidence            47899999999999999999999999999999999886  4688888888765667766431                  


Q ss_pred             cccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248           98 KIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        98 ~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~  143 (144)
                         ...+|.+|+++++..+.+.+... .||++.|.++||.+.||+-
T Consensus        62 ---~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~iP~~~GLgS  103 (351)
T PRK03817         62 ---KLNSWADYIKGVIWVLEKRGYEV-GGVKGKVSSNLPIGAGLSS  103 (351)
T ss_pred             ---CCCchHHHHHHHHHHHHHcCCCC-CCeEEEEeCCCCCCCCcCc
Confidence               35689999999999999877654 6999999999999999963

>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional

Probab=99.80  E-value=2e-19  Score=166.67  Aligned_cols=112  Identities=19%  Similarity=0.171  Sum_probs=87.6

Q ss_pred             CceeEEEEccceeeccccccc------cCCceEEeeeecce----EEEEEEecCCCeEEEEeCCCCCceEEec-Cccccc
Q 032248           13 AEVVRVVVSPYRICPLGAHID------HQGGTVSAMTINKG----ILLGFVPSGDTEVVLRSGQFDGEVRFSI-DEIQQP   81 (144)
Q Consensus        13 p~~~~v~~APGRVnLIGEH~D------Y~gG~VLp~AI~~~----~~va~~~~~d~~v~i~s~~~~~~~~~~l-~~l~~~   81 (144)
                      ++.+.+++|||||||||||||      |+||.|||+||++.    +++.++++.|.++++.|.+++....++. +++.. 
T Consensus       606 ~~~~~~~~aPgRVnLiGghTDtPpy~~ynGG~VLn~AId~~g~~pi~v~v~~~~d~~irl~S~d~~~~~~v~~~~~l~~-  684 (974)
T PRK13412        606 SDQIVWGRSPVRIDLAGGWTDTPPYCLYSGGNVVNLAIELNGQPPLQVYVKPCSEPHIVLRSIDLGAMEVVRTNEELRD-  684 (974)
T ss_pred             cCcEEEEeCceEEeecccCcCCCcccCcCCcEEEEEEEeCCCCccEEEEEEECCCCeEEEEECCCCCceEEecchhhcc-
Confidence            344556799999999999999      99999999999997    9999999999999999999875444443 33211 


Q ss_pred             cccccccccccccccccccCcCChhhHHHHHHH--------------HHHHcCCCCCCcEEEEEEccCCCCCCcc
Q 032248           82 RNSVKKHHVVHASDSAKIKEECKWGNYARGALY--------------ALQSRGNNLTQVKMFLCCHFMNHLFALS  142 (144)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv~Gv~~--------------~l~~~g~~~~~G~d~~I~g~~p~~~~~~  142 (144)
                                       .....+|.+|++|++.              .|++.....+.||++.|.|+||.++||+
T Consensus       685 -----------------~~~~~~~~~~~K~al~~~G~~~~~~~~~~~~l~e~l~~~G~G~~I~i~s~IP~GsGLG  742 (974)
T PRK13412        685 -----------------YKKVGSPFSIPKAALCLAGFAPRFSAESYASLEEQLKAFGSGIEITLLAAIPAGSGLG  742 (974)
T ss_pred             -----------------cccccchHhhhhhhheecccccccccchhHHHHHHHHhcCCCeEEEEecCCCCCCCcc
Confidence                             1245789999999985              3333211123599999999999999997

>TIGR00549 mevalon_kin mevalonate kinase

Probab=99.79  E-value=1.9e-19  Score=144.80  Aligned_cols=94  Identities=19%  Similarity=0.127  Sum_probs=75.7

Q ss_pred             ccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccccccccccc
Q 032248           21 SPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIK  100 (144)
Q Consensus        21 APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  100 (144)
                      |||||||||||+||+||+|||+|||+++++++++++++ +++.+..+...    ....  .                  .
T Consensus         1 aPgkv~L~GEH~v~~g~~al~~aI~~~~~~~~~~~~~~-~~i~~~~~~~~----~~~~--~------------------~   55 (273)
T TIGR00549         1 APGKIILFGEHAVVYGEPAIAAPIPLRTTVTVIESSDG-SFIESDLGRGS----LDDA--P------------------Q   55 (273)
T ss_pred             CCceEEEEecChhccCCCeeEEEecccEEEEEEEcCCC-ceEeccccCCc----HhHh--h------------------H
Confidence            79999999999999999999999999999999998877 66776555311    1111  0                  1


Q ss_pred             CcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCcc
Q 032248          101 EECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALS  142 (144)
Q Consensus       101 ~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~  142 (144)
                      ....|.+|+++++..+.+.+   ..|+++.|.++||.+.||+
T Consensus        56 ~~~~~~~~v~~~l~~~~~~~---~~~~~i~i~s~iP~g~GLG   94 (273)
T TIGR00549        56 ELDGLVSYIAEALSYFSELN---PPPLEIEIDSEIPPGRGLG   94 (273)
T ss_pred             HHHHHHHHHHHHHHHhhccC---CCCEEEEEecCCCCCCCcc
Confidence            34679999999999887532   2369999999999999996

Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.

>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch

Probab=99.66  E-value=8.5e-16  Score=129.60  Aligned_cols=109  Identities=12%  Similarity=0.144  Sum_probs=81.7

Q ss_pred             EEEccceeeccccccccC-CceEEeeeecceEEEEEEecCCCeEEEEeCCCCC-ceEEecCccccccccccccccccccc
Q 032248           18 VVVSPYRICPLGAHIDHQ-GGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG-EVRFSIDEIQQPRNSVKKHHVVHASD   95 (144)
Q Consensus        18 v~~APGRVnLIGEH~DY~-gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~-~~~~~l~~l~~~~~~~~~~~~~~~~~   95 (144)
                      .++|||||+|||||+||+ |.++|++||++++++.++++++..++|.+.++.. ..++..+......             
T Consensus         2 ~~~APGKl~L~GEhavv~~G~pAl~~aI~~~~~v~i~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~-------------   68 (358)
T TIGR01220         2 VVHAPGKLFVAGEYAVVEPGNPAILVAVDRFVTVTVEDADGAADVIISSDLGPQPVGWRRHDGRLVV-------------   68 (358)
T ss_pred             eeecceeEEEeeeEEEecCCCeEEEEEEcCcEEEEEEeCCCCceEEEecCCCCCceEEEecCCceee-------------
Confidence            478999999999999999 6679999999999999999998888999888753 3455443210000             


Q ss_pred             cccccCcCChhhHHHHHHHHHHH----cCCCCCCcEEEEEEccCCCC----CCcc
Q 032248           96 SAKIKEECKWGNYARGALYALQS----RGNNLTQVKMFLCCHFMNHL----FALS  142 (144)
Q Consensus        96 ~~~~~~~~~Wa~Yv~Gv~~~l~~----~g~~~~~G~d~~I~g~~p~~----~~~~  142 (144)
                        .......|.+|+++++..+.+    .+... .||++.|.|++|..    .||+
T Consensus        69 --~~~~~~~~~~~v~~~i~~~~~~~~~~~~~~-~g~~~~i~s~ip~~~g~k~GLG  120 (358)
T TIGR01220        69 --RDPDARSALAYVVSAIETVERYAGERNQKL-PALHLSVSSRLDEADGRKYGLG  120 (358)
T ss_pred             --cccccccchHHHHHHHHHHHHHHHhcCCCC-CceEEEEecCCCCcCCCCCCcc
Confidence              001235799999999976533    34444 49999999999984    4664

This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.

>PRK03926 mevalonate kinase; Provisional

Probab=99.52  E-value=8.7e-14  Score=113.80  Aligned_cols=91  Identities=13%  Similarity=0.116  Sum_probs=72.1

Q ss_pred             EEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccccccc
Q 032248           17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS   96 (144)
Q Consensus        17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~   96 (144)
                      ..++|||||||+|||.||+||.+|++||++++.+.++++++. +++.+ ...                            
T Consensus         2 ~~~~aPgkv~L~Geh~~~~g~~~l~~aI~~~~~v~i~~~~~~-~~i~~-~~~----------------------------   51 (302)
T PRK03926          2 VLCSAPGKIYLFGEHAVVYGKPAIACAIDLRTYVRAEFNDDS-IYIES-DYG----------------------------   51 (302)
T ss_pred             eEEeeeeEEEEEecceeecCCeEEEEEecceEEEEEEECCCc-eEEec-ccc----------------------------
Confidence            368999999999999999999999999999999999887543 33321 100                            


Q ss_pred             ccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248           97 AKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        97 ~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~  143 (144)
                          ....|.+|++.++..+.+.. .. .|+++.|.++||...||+.
T Consensus        52 ----~~~~~~~~~~~~~~~~~~~~-~~-~g~~i~i~~~iP~~~GLGS   92 (302)
T PRK03926         52 ----KTGEKHPYVSAAIEKMREEA-DK-DGVTVSITSQIPVGSGLGS   92 (302)
T ss_pred             ----cccchhHHHHHHHHHHHHhc-CC-CCeEEEEecCCCCCCCccH
Confidence                01258889999998888753 23 3999999999999999964

>PLN02677 mevalonate kinase

Probab=99.43  E-value=1.6e-12  Score=111.24  Aligned_cols=61  Identities=18%  Similarity=0.182  Sum_probs=46.3

Q ss_pred             EEEEccceeeccccccccCCceEEeeeecceEEEEEEecC----CCeEEEEeCCCCCceEEecCc
Q 032248           17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSG----DTEVVLRSGQFDGEVRFSIDE   77 (144)
Q Consensus        17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~----d~~v~i~s~~~~~~~~~~l~~   77 (144)
                      +.++|||||+|+|||+||+|+.++++||++++++.+++++    .+++++...+.+-..+.++++
T Consensus         3 i~v~apgk~~l~Geh~~~~g~~a~~~ai~~~~~~~~~~~~~~~~~~~i~~~~~di~~~~~~~~~~   67 (387)
T PLN02677          3 VKARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVSLRFPPSAENDDTLKLQLKDLGLEFSWPLAR   67 (387)
T ss_pred             eEEeCCccEEEeeeeeeecCCeeeeeEeeceEEEEEEecCCCCCCCeEEEEcCCCCceEEechHh
Confidence            4689999999999999999999999999999999999853    344554444433333444443

>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase

Probab=99.35  E-value=7e-12  Score=103.20  Aligned_cols=95  Identities=19%  Similarity=0.131  Sum_probs=75.4

Q ss_pred             EEEEccceeecccccccc-CCce----EEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccc
Q 032248           17 RVVVSPYRICPLGAHIDH-QGGT----VSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVV   91 (144)
Q Consensus        17 ~v~~APGRVnLIGEH~DY-~gG~----VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~   91 (144)
                      ++++|||||||++||+|| ++|+    +++++|+++..+.+++++++.+++.+.+++         +  +          
T Consensus         2 ~~~~apaKiNL~l~i~~~r~dGyH~l~sl~~~i~l~d~v~i~~~~~~~i~~~~~~~~---------~--~----------   60 (293)
T TIGR00154         2 HVFPSPAKLNLFLYITGKRPDGYHELQTLMQFLDLGDKIIISVRSDDDIRLLKGDFD---------V--P----------   60 (293)
T ss_pred             ceEeecccEEEEEecCCcCCCCCcceEEEEEEeccCcEEEEEECCCCcEEEeeCCCC---------C--C----------
Confidence            357999999999999999 8888    999999999999999988777777543211         1  1          


Q ss_pred             cccccccccCcCChhhHHHHHHHHHHHcCCC---CCCcEEEEEEccCCCCCCccCC
Q 032248           92 HASDSAKIKEECKWGNYARGALYALQSRGNN---LTQVKMFLCCHFMNHLFALSYG  144 (144)
Q Consensus        92 ~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~---~~~G~d~~I~g~~p~~~~~~~~  144 (144)
                               .+ +  ||+..++..|.++...   ...|+++.|.++||.+.||..|
T Consensus        61 ---------~~-~--nlv~~a~~~l~~~~~~~~~~~~~~~i~i~~~iP~~aGLGss  104 (293)
T TIGR00154        61 ---------LE-E--NLIYRAAQLLKNFANSKIKSLDGANIEIDKNIPMGAGLGGG  104 (293)
T ss_pred             ---------CC-C--cHHHHHHHHHHHHhcccccCCCCeEEEEeccCCCCCCcchh
Confidence                     11 2  9999999988875321   2359999999999999999754

Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.

>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=99.13  E-value=6.2e-10  Score=92.00  Aligned_cols=94  Identities=16%  Similarity=0.059  Sum_probs=74.0

Q ss_pred             EEEEccceeec----cccccc-cCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccc
Q 032248           17 RVVVSPYRICP----LGAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVV   91 (144)
Q Consensus        17 ~v~~APGRVnL----IGEH~D-Y~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~   91 (144)
                      ..++|||||||    +|+|.| |+.+.+++++|+++..+.++++++..+++.+...         .+  +          
T Consensus         4 ~~~~apakiNL~L~i~g~~~dGy~~l~~~~~~i~l~d~v~v~~~~~~~~~~~~~~~---------~~--~----------   62 (312)
T PRK02534          4 YTLIAPAKINLHLEILGDRPDGFHELAMVMQSIDLADRLELRNNGDGTIRLHCDHP---------QL--S----------   62 (312)
T ss_pred             EEEEeceEEEeccccCccCCCCCCceEEEEEECCCCCEEEEEECCCCcEEEEECCC---------CC--C----------
Confidence            35789999999    899999 9999999999999999999988766666543210         11  1          


Q ss_pred             cccccccccCcCChhhHHHHHHHHHHHc-CCCCCCcEEEEEEccCCCCCCccC
Q 032248           92 HASDSAKIKEECKWGNYARGALYALQSR-GNNLTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        92 ~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~-g~~~~~G~d~~I~g~~p~~~~~~~  143 (144)
                                 .+..|++..++..+.++ +... .|+++.|.++||.+.||..
T Consensus        63 -----------~~~~n~~~~~~~~~~~~~~~~~-~~~~i~i~~~IP~~~GLGS  103 (312)
T PRK02534         63 -----------TDDDNLIYRAAQLLRKRFPFAE-GGVDITLEKRIPIGAGLAG  103 (312)
T ss_pred             -----------CCchhHHHHHHHHHHHHhCCCC-CCeEEEEecCCCCcCCccH
Confidence                       12467898888888775 4332 5899999999999999975

>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=99.05  E-value=1.7e-09  Score=88.05  Aligned_cols=93  Identities=19%  Similarity=0.072  Sum_probs=73.2

Q ss_pred             EEEEccceeec----cccccc-cCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccc
Q 032248           17 RVVVSPYRICP----LGAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVV   91 (144)
Q Consensus        17 ~v~~APGRVnL----IGEH~D-Y~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~   91 (144)
                      +.+.|||||||    +|+|.| |+...++++||+++..+.++++++..+++.+...         ..             
T Consensus         3 ~~~~apakinl~l~i~g~~~dg~h~l~si~~ai~l~~~v~v~~~~~~~~~i~~~~~---------~~-------------   60 (286)
T PRK00128          3 ILEKAPAKINLSLDVLGKREDGYHEVEMIMQTIDLADRLEIEKLKEDGIVVESNNR---------YV-------------   60 (286)
T ss_pred             EEEeccceEEEEeecCccCCCCcceeheeeEecCCCcEEEEEECCCCCEEEEeCCC---------CC-------------
Confidence            45789999999    999999 9999999999999999999988766666653210         11             


Q ss_pred             cccccccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCcc
Q 032248           92 HASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALS  142 (144)
Q Consensus        92 ~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~  142 (144)
                                ..+|.|++..++..+.++. ....|+++.|.++||...||.
T Consensus        61 ----------~~~~~n~~~~~~~~~~~~~-~~~~~~~i~i~~~iP~~~GLG  100 (286)
T PRK00128         61 ----------PNDERNLAYKAAKLLKERY-NIKQGVSITIDKNIPVAAGLA  100 (286)
T ss_pred             ----------CCCCCcHHHHHHHHHHHhc-CCCCCeEEEEEcCCCccccch
Confidence                      1246778888888777652 233589999999999999994

>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]

Probab=98.21  E-value=8e-06  Score=68.32  Aligned_cols=97  Identities=15%  Similarity=0.139  Sum_probs=75.0

Q ss_pred             EEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccccccccc
Q 032248           18 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSA   97 (144)
Q Consensus        18 v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~   97 (144)
                      .++|||.+-|+|||.=-.|.+.+.+||+++.++.++.+++..+.+.+.+++..   .+.   .+                
T Consensus         2 ~~~aPgKliL~GEHAVVyG~pAI~~aI~~~~~v~~~~s~~~~~~i~~~~~~~~---~~~---~~----------------   59 (307)
T COG1577           2 SVSAPGKLILFGEHAVVYGYPAIAAAIDLRVTVTISESDSNKIVIESSDLKSS---TLE---RD----------------   59 (307)
T ss_pred             cccccccEEEEecceeeeCCchhheeeeeeEEEEEEecCCCcEEEeccCCCCc---ccc---cc----------------
Confidence            46899999999999877799999999999999999999988888888776632   111   10                


Q ss_pred             cccCcCChhhHHHHHHHHHHHcCC-CCCCcEEEEEEccCCCCCCcc
Q 032248           98 KIKEECKWGNYARGALYALQSRGN-NLTQVKMFLCCHFMNHLFALS  142 (144)
Q Consensus        98 ~~~~~~~Wa~Yv~Gv~~~l~~~g~-~~~~G~d~~I~g~~p~~~~~~  142 (144)
                          +.  ..|+.-++..+.+.-. ....+|++.|+|.||-++||-
T Consensus        60 ----~~--~~~~~~~v~~~~e~~~~~~~~~~~l~I~S~iP~g~GLG   99 (307)
T COG1577          60 ----ED--EGYIQAAVRLASELLNQSSLKPFSLEIDSEIPIGAGLG   99 (307)
T ss_pred             ----cc--chHHHHHHHHHHHHhcccCCCCeEEEEecCCCCCCCcc
Confidence                11  1777777766665322 234699999999999999983

>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]

Probab=98.16  E-value=2e-05  Score=67.05  Aligned_cols=61  Identities=21%  Similarity=0.291  Sum_probs=51.9

Q ss_pred             EEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCc
Q 032248           17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDE   77 (144)
Q Consensus        17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~   77 (144)
                      ..++|||.|-|+|||.=-.|...|++||+++|++-+.+..++++.+.-.+..-+.++.+++
T Consensus         5 l~vsaPGKvILfGEHAVVyg~~AlAaai~LrTyl~l~~san~~i~l~l~di~~~~~w~l~~   65 (397)
T KOG1511|consen    5 LLVSAPGKVILFGEHAVVYGRTALAAAIDLRTYLRLQTSANDRILLQLPDISIEKAWSLAD   65 (397)
T ss_pred             eeecCCccEEEeccceeEECCceeEEEeecceeEEEEecCCCeEEEecccCCceEEEEhhh
Confidence            3789999999999999999999999999999999999988888877655555445666654

>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=98.04  E-value=6.5e-05  Score=61.38  Aligned_cols=92  Identities=17%  Similarity=-0.033  Sum_probs=68.2

Q ss_pred             EEEccceeecccccc-----c-cCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccc
Q 032248           18 VVVSPYRICPLGAHI-----D-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVV   91 (144)
Q Consensus        18 v~~APGRVnLIGEH~-----D-Y~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~   91 (144)
                      .++||+.|||.+ |+     | |+.-.-+.++|+.+..+.++++++..+++.+.. +        .              
T Consensus         8 ~~~apaKiNL~L-~v~~~r~dGyH~l~s~~~~i~l~D~v~i~~~~~~~~~i~~~~-~--------~--------------   63 (271)
T PRK00343          8 DWPAPAKLNLFL-HITGRRADGYHELQTLFQFLDWGDTLHFEVRDDGEIRLLTPI-P--------G--------------   63 (271)
T ss_pred             EEeeeeeEEEEe-ecCCcCCCCCCeeeEEEEEcccceEEEEEECCCCcEEEeCCC-C--------C--------------
Confidence            468999999998 65     2 555556888999998988888776555554211 0        0              


Q ss_pred             cccccccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccCC
Q 032248           92 HASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSYG  144 (144)
Q Consensus        92 ~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~~  144 (144)
                                ...|.||+..++..|.++.... .|+++.|.++||.+.||..|
T Consensus        64 ----------~~~~~N~v~~a~~~l~~~~~~~-~~~~i~i~k~IP~gaGLGss  105 (271)
T PRK00343         64 ----------VPEEDNLIVRAARLLQKATGTP-LGADISLDKRLPMGGGLGGG  105 (271)
T ss_pred             ----------CCCcccHHHHHHHHHHHHhCCC-CCeEEEEEcCCCCcCCCCcc
Confidence                      1246899999999998863333 49999999999999999543

>PTZ00298 mevalonate kinase; Provisional

Probab=97.71  E-value=7.2e-05  Score=62.42  Aligned_cols=97  Identities=7%  Similarity=-0.073  Sum_probs=62.5

Q ss_pred             EEEccceeeccccccccCCceEEeeeecceEEEEEEecC-CCeEEEEeCCCCCceEEecCcccccccccccccccccccc
Q 032248           18 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSG-DTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS   96 (144)
Q Consensus        18 v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~-d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~   96 (144)
                      ..+|||+|-|+|||-+=.|...+..+|+++..+.+..++ ++.+.+....         ..+  +               
T Consensus        12 ~~~~~~kvil~GEHaVvyg~~aI~~~I~~~d~~~i~~~~~~~~~~~~~~~---------~~~--~---------------   65 (328)
T PTZ00298         12 KHIGYGKVILFGEHFVVYGAEAIVAGIDEYTECRLELTKGVPGLQVVDQR---------PAV--P---------------   65 (328)
T ss_pred             CCCcCeeEEEEecceeecCCchhhhecccceEEEEEEccCCCCceecccc---------ccc--c---------------
Confidence            568999999999999999999999999998655555433 2222211100         000  0               


Q ss_pred             ccccCcCChhhHHHHHHHHHHH-cCCCC-CCcEEEEEEccCCCCCCccC
Q 032248           97 AKIKEECKWGNYARGALYALQS-RGNNL-TQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        97 ~~~~~~~~Wa~Yv~Gv~~~l~~-~g~~~-~~G~d~~I~g~~p~~~~~~~  143 (144)
                         ....+-.|.+..+...+.+ .+... ..|+++.|.++||.+.||+.
T Consensus        66 ---~~~~~~~n~~~~a~~~~~~~~~~~~~~~g~~I~I~~~IP~gaGLGS  111 (328)
T PTZ00298         66 ---GYIVEKREEQRKAHQLVLRHLNIDTSVDGLKMHLGGPLVPSSGIGA  111 (328)
T ss_pred             ---chHHHhHHHHHHHHHHHHHHHhcccCCCCeEEEEECCCCCCCCchH
Confidence               0111224555555555554 34322 24999999999999999974

>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]

Probab=97.58  E-value=0.00024  Score=59.40  Aligned_cols=94  Identities=22%  Similarity=0.191  Sum_probs=66.0

Q ss_pred             EEEccceeecccccccc------CCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccc
Q 032248           18 VVVSPYRICPLGAHIDH------QGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVV   91 (144)
Q Consensus        18 v~~APGRVnLIGEH~DY------~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~   91 (144)
                      +.+||=|+.+-|.=||+      .||.||.++||+.+++.+.+..|..|++..   +.. ++ +++..            
T Consensus         3 i~raPLRItfgGGGTDvepy~~k~GGaVlnatIdky~y~~i~~~~d~~I~~~~---~~~-~~-v~~~~------------   65 (333)
T COG2605           3 ISRAPLRITFGGGGTDVEPYCSKHGGAVLNATIDKYIYVTIEKGFDDEIRVRY---DRT-EF-VKSYL------------   65 (333)
T ss_pred             ccccceEEEecCCCcCchHHHHhcCCEEEEeeeeeEEEEEEccCCCceEEEec---chH-Hh-hhhhH------------
Confidence            56799999999999998      489999999999999999999999998872   211 11 11110            


Q ss_pred             cccccccccCcCChhhHHHHHHHH-HHHcCCCCCCc--EEEEEEccCCCCCCcc
Q 032248           92 HASDSAKIKEECKWGNYARGALYA-LQSRGNNLTQV--KMFLCCHFMNHLFALS  142 (144)
Q Consensus        92 ~~~~~~~~~~~~~Wa~Yv~Gv~~~-l~~~g~~~~~G--~d~~I~g~~p~~~~~~  142 (144)
                              .-++.  .-++.++.. +..    ..+|  +.+...+|+|.++||-
T Consensus        66 --------~~~h~--~~~~~~l~r~~l~----~~g~~~~el~~~~D~P~GSGLG  105 (333)
T COG2605          66 --------ENEHK--PLVVESLKRDFLE----FNGGTPIELHTQSDAPPGSGLG  105 (333)
T ss_pred             --------hhcCc--hHHHHHHHHHHHh----hcCCCceEEEEecCCCCCCCCC
Confidence                    01122  334444442 222    2234  9999999999999983

>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=95.86  E-value=0.056  Score=43.99  Aligned_cols=90  Identities=12%  Similarity=-0.070  Sum_probs=59.9

Q ss_pred             EEEccceeecc----ccccc-cCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccc
Q 032248           18 VVVSPYRICPL----GAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVH   92 (144)
Q Consensus        18 v~~APGRVnLI----GEH~D-Y~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~   92 (144)
                      .++||+.|||.    |..-| |+.-.-+-.+|+++-.+.+.+.+  .+++..           +..              
T Consensus         3 ~~~a~aKiNL~L~i~~kr~dgyH~l~s~~~ai~l~d~v~i~~~~--~~~i~~-----------~~~--------------   55 (275)
T PRK14611          3 VLLSPAKVNLGLWILGKRPDGYHEIFTIYHTIDLYDRIYIKEHH--TLEVKT-----------SSP--------------   55 (275)
T ss_pred             eeeecceEEeeeccCcCCCCCcchhhheeEeccCCcEEEEEECC--cEEEEe-----------CCC--------------
Confidence            36899999974    55545 66666677777777777666533  122221           100              


Q ss_pred             ccccccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248           93 ASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        93 ~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~  143 (144)
                              ....+.|++..++..+++.... ..|+.+.|.++||...||..
T Consensus        56 --------~~~~~~n~v~~a~~~~~~~~g~-~~~~~i~i~k~IP~~~GLGS   97 (275)
T PRK14611         56 --------QIKEEENIVYKALRLFERYTGI-DINYSIFIEKNIPVGAGLGG   97 (275)
T ss_pred             --------CCCCcccHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCCccH
Confidence                    0112789998888888875222 35899999999999999964

>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=95.31  E-value=0.26  Score=40.54  Aligned_cols=41  Identities=17%  Similarity=-0.037  Sum_probs=31.2

Q ss_pred             ChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccCC
Q 032248          104 KWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSYG  144 (144)
Q Consensus       104 ~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~~  144 (144)
                      ++.|++.-++..+.++......|+++.|.++||.+.||..|
T Consensus        68 ~~~Nlv~ka~~~~~~~~g~~~~~~~i~i~k~IP~~~GLGss  108 (290)
T PRK14608         68 GDDNLVLRAARALRARVGPGLPPGAFHLEKNLPVAAGIGGG  108 (290)
T ss_pred             CCCcHHHHHHHHHHHHhCCCCCceEEEEEeCCcCcCCchHH
Confidence            47899987778777643212248999999999999999653

>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=94.20  E-value=0.86  Score=37.61  Aligned_cols=93  Identities=12%  Similarity=-0.011  Sum_probs=61.6

Q ss_pred             EEEEccceeecc----ccccc-cCCceEEeeeec-ceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccc
Q 032248           17 RVVVSPYRICPL----GAHID-HQGGTVSAMTIN-KGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHV   90 (144)
Q Consensus        17 ~v~~APGRVnLI----GEH~D-Y~gG~VLp~AI~-~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~   90 (144)
                      ..+.||+.|||.    |-.-| |+.-..+-++|+ ..-.+.+++.++..+++.... .        .+  +         
T Consensus         7 ~~~~apaKINL~L~v~~kr~DGyH~l~sl~~~i~~~~D~l~i~~~~~~~i~~~~~~-~--------~~--~---------   66 (296)
T PRK14615          7 VTLRSGCKVNLDLRITGVRPDGYHEIDSLFLPLPEPHDELHVRVTDAPGITVTCTI-P--------DL--D---------   66 (296)
T ss_pred             EEEEecceEEeccccCCcCCCCCcceEEEEEECCCCCcEEEEEECCCCCEEEEECC-C--------CC--C---------
Confidence            357899999974    66666 777778888887 476777776654445443211 0        01  0         


Q ss_pred             ccccccccccCcCChhhHHHHHHHHHHHc-CCCCCCcEEEEEEccCCCCCCccCC
Q 032248           91 VHASDSAKIKEECKWGNYARGALYALQSR-GNNLTQVKMFLCCHFMNHLFALSYG  144 (144)
Q Consensus        91 ~~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~-g~~~~~G~d~~I~g~~p~~~~~~~~  144 (144)
                                .  . .|.+.-++..+.++ +.  ..|+.+.|..+||...||-.|
T Consensus        67 ----------~--~-~Nlv~~a~~~~~~~~~~--~~~~~i~i~k~IP~~~GLGsg  106 (296)
T PRK14615         67 ----------P--E-RNTVTRAYTAFAAATGF--RPPLEVHLRKGIPHGAGLGGG  106 (296)
T ss_pred             ----------C--C-ccHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCCCCccHH
Confidence                      1  1 45565555666553 43  258999999999999999654

>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=93.85  E-value=0.86  Score=37.02  Aligned_cols=92  Identities=17%  Similarity=0.111  Sum_probs=61.0

Q ss_pred             EEEccceeec----cccccc-cCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccc
Q 032248           18 VVVSPYRICP----LGAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVH   92 (144)
Q Consensus        18 v~~APGRVnL----IGEH~D-Y~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~   92 (144)
                      .+.||+.|||    .|-.-| |+.-..|-++|+++-.+.+.+.++ .+++....   .      .+  +           
T Consensus         4 ~~~a~aKiNl~L~i~~~~~dgyH~l~sl~~al~l~d~v~i~~~~~-~~~i~~~~---~------~~--p-----------   60 (276)
T PRK14612          4 ERLAPAKVNLGLSVLGRREDGYHELHTLMVPLDVGDRLEVEPIAS-GLELRVLG---A------DL--P-----------   60 (276)
T ss_pred             EEeeCcEEeeccccCCCCCCCCceeEEEEEECCCCCEEEEEECCC-cEEEEcCC---C------CC--C-----------
Confidence            3579999997    477667 888889999999988888877543 34443111   0      01  0           


Q ss_pred             ccccccccCcCChhhHHHHHHHHHHH-cCCCCCCcEEEEEEccCCCCCCccCC
Q 032248           93 ASDSAKIKEECKWGNYARGALYALQS-RGNNLTQVKMFLCCHFMNHLFALSYG  144 (144)
Q Consensus        93 ~~~~~~~~~~~~Wa~Yv~Gv~~~l~~-~g~~~~~G~d~~I~g~~p~~~~~~~~  144 (144)
                                .+..|.+.-++..+.+ .+.  ..|+++.|..+||.+.||-.|
T Consensus        61 ----------~~~~Nli~ka~~~~~~~~g~--~~~~~I~i~k~IP~~~GLGss  101 (276)
T PRK14612         61 ----------TDERNLVYRAARAYLDAAGQ--PGGVRITLEKRLPLAAGLGGG  101 (276)
T ss_pred             ----------CCCcccHHHHHHHHHHHhCC--CCCeEEEEEecCCCcCCCchH
Confidence                      1133555444444444 453  248999999999999999654

>TIGR01920 Shik_kin_archae shikimate kinase

Probab=93.43  E-value=0.56  Score=38.01  Aligned_cols=65  Identities=11%  Similarity=-0.089  Sum_probs=46.2

Q ss_pred             EeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccccccccccccCcCChhhHHHHHHHHHHHc
Q 032248           40 SAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSR  119 (144)
Q Consensus        40 Lp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~  119 (144)
                      ..++|++++.+.+++.++..+.+.+.           .                       .    .|++..++..+.++
T Consensus        17 ~a~aI~~~~~v~v~~~~~~~~~~~~~-----------~-----------------------~----~n~i~~~~~~~~~~   58 (261)
T TIGR01920        17 GAFGIDLWVEAKVREGDEAGVSTYVR-----------G-----------------------N----PRLIERILTAIRSK   58 (261)
T ss_pred             eEEEccCceEEEEEECCCCceeeeec-----------C-----------------------C----hHHHHHHHHHHHHh
Confidence            46778888888888876554433221           0                       0    17888888888875


Q ss_pred             CCCCCCcEEEEEEccCCCCCCccC
Q 032248          120 GNNLTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus       120 g~~~~~G~d~~I~g~~p~~~~~~~  143 (144)
                      ... +.|+++.|.++||...||..
T Consensus        59 ~~~-~~g~~i~i~s~iP~~~GLGS   81 (261)
T TIGR01920        59 FGI-VDGLEVEVESEIPAGSGLKS   81 (261)
T ss_pred             cCC-CCCEEEEEecCCCCCCCcch
Confidence            332 36999999999999999863

This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.

>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=93.26  E-value=0.98  Score=36.82  Aligned_cols=40  Identities=15%  Similarity=-0.092  Sum_probs=32.5

Q ss_pred             CChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccCC
Q 032248          103 CKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSYG  144 (144)
Q Consensus       103 ~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~~  144 (144)
                      ..|.|++.-++..++++.. . .|+++.|..+||.++||..|
T Consensus        61 ~~~~Nlv~~a~~~~~~~~~-~-~~~~i~i~k~IP~~aGLGss  100 (269)
T PRK14609         61 DPEDNLVVKAYNLLKKDFP-L-PPVHIHLYKHIPIGAGLGGG  100 (269)
T ss_pred             CccccHHHHHHHHHHHHcC-C-CCeEEEEecCCCCCCcccHH
Confidence            4688999888888887533 3 48999999999999999754

>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=92.68  E-value=2  Score=35.27  Aligned_cols=38  Identities=13%  Similarity=-0.046  Sum_probs=30.1

Q ss_pred             hhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccCC
Q 032248          106 GNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSYG  144 (144)
Q Consensus       106 a~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~~  144 (144)
                      .|++.-++..|.++.... .|+++.|..+||...||-+|
T Consensus        65 ~Nlv~kA~~~l~~~~~~~-~g~~i~i~K~IP~~aGLGgg  102 (283)
T PRK14610         65 NNTVQRAIGLLLRHSPVR-TNVYVKVIKNIPVSAGLAGG  102 (283)
T ss_pred             CcHHHHHHHHHHHHhCCC-CCeEEEEEcCCCCCCcCCcc
Confidence            788877777777643222 49999999999999999765

>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]

Probab=92.28  E-value=0.28  Score=44.52  Aligned_cols=36  Identities=22%  Similarity=0.371  Sum_probs=26.2

Q ss_pred             CCCCceeEEEEccceeecccccccc-------CCceEEeeeecc
Q 032248           10 GRDAEVVRVVVSPYRICPLGAHIDH-------QGGTVSAMTINK   46 (144)
Q Consensus        10 G~~p~~~~v~~APGRVnLIGEH~DY-------~gG~VLp~AI~~   46 (144)
                      |..|.- +++.||.||.+.|.-.|-       ..+-|+-|||..
T Consensus       566 g~g~s~-Viae~PaRiDF~GGW~DTPPiafel~n~AVlglAikl  608 (948)
T KOG4644|consen  566 GAGPST-VIAEAPARIDFFGGWLDTPPIAFELDNAAVLGLAIKL  608 (948)
T ss_pred             CCCCce-EEEecceeeeecccccCCCCeeEeccccceeeeEEEe
Confidence            445532 689999999999998874       236788887743

>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=92.13  E-value=1.6  Score=35.67  Aligned_cols=90  Identities=20%  Similarity=0.041  Sum_probs=55.1

Q ss_pred             EEEccceeecc----ccccc-cCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccc
Q 032248           18 VVVSPYRICPL----GAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVH   92 (144)
Q Consensus        18 v~~APGRVnLI----GEH~D-Y~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~   92 (144)
                      .+.||+.|||.    |-=-| |+.-..+.++|+++..+.+.+.+  .+++....         .++  +           
T Consensus         5 ~~~a~aKiNL~L~i~~~r~dgyH~l~si~~~i~l~d~v~v~~~~--~~~i~~~~---------~~~--p-----------   60 (287)
T PRK14616          5 SVKAFAKINLGLLITGKRPDGYHTLETIFAPINWYDTLTFSPSD--TISMSCTN---------LDL--P-----------   60 (287)
T ss_pred             EEeeceeEEeeeecCCCCCCCccceeEEEEEcCCCCEEEEEECC--CEEEEeCC---------CCC--C-----------
Confidence            46899999974    33323 66666777778777777776532  23322100         011  1           


Q ss_pred             ccccccccCcCChhhHHHHHHHHHHHc-CCCCCCcEEEEEEccCCCCCCccC
Q 032248           93 ASDSAKIKEECKWGNYARGALYALQSR-GNNLTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        93 ~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~-g~~~~~G~d~~I~g~~p~~~~~~~  143 (144)
                                .+..|.+.-++..+.++ +.  ..|+++.|..+||.+.||-.
T Consensus        61 ----------~~~~nl~~~a~~~~~~~~~~--~~~~~I~i~k~IP~~~GLGs  100 (287)
T PRK14616         61 ----------VDDSNLCIRAAKALQEYAGV--SKGVSITLDKRVPFGAGLGG  100 (287)
T ss_pred             ----------CCccHHHHHHHHHHHHHhCC--CCCeEEEEEeCCCCcCCchH
Confidence                      12346665555555543 32  35899999999999999854

>PRK01123 shikimate kinase; Provisional

Probab=89.99  E-value=3.6  Score=33.52  Aligned_cols=86  Identities=9%  Similarity=-0.041  Sum_probs=56.8

Q ss_pred             EEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccccccccc
Q 032248           19 VVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAK   98 (144)
Q Consensus        19 ~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~   98 (144)
                      +++=|=+..+-++.+-.|+-+   +|+++..+.+++.++.. .+.. .+        ..+                    
T Consensus         5 ~~~~gg~~~~~~~~~~~g~~~---~i~l~~~v~v~~~~~~~-~~~~-~~--------~~~--------------------   51 (282)
T PRK01123          5 ATALGAGTIINAIATGKGSAF---GIDLKTTATVELSDDGG-GIEG-EI--------SGN--------------------   51 (282)
T ss_pred             EEecchhhhhhhhhcCcccEE---EeccEEEEEEEECCCCc-eeee-cc--------cCC--------------------
Confidence            356666667777777777766   99999999998866542 2221 00        111                    


Q ss_pred             ccCcCChhhHHHHHHHHHHHc-CCCCCCcEEEEEEccCCCCCCcc
Q 032248           99 IKEECKWGNYARGALYALQSR-GNNLTQVKMFLCCHFMNHLFALS  142 (144)
Q Consensus        99 ~~~~~~Wa~Yv~Gv~~~l~~~-g~~~~~G~d~~I~g~~p~~~~~~  142 (144)
                        +..+ .|++.-++..+.+. +.  +.|+++.|.++||...||.
T Consensus        52 --~~~~-~~~v~~~~~~~~~~~~~--~~~~~i~i~s~IP~~~GLG   91 (282)
T PRK01123         52 --PDAD-TRLIERCVELVLERFGI--DYGATVRTKSEIPLASGLK   91 (282)
T ss_pred             --CCCC-chHHHHHHHHHHHHhCC--CCCEEEEEecCCCCCCCcc
Confidence              1122 27777777766653 33  2499999999999999985

>PLN02451 homoserine kinase

Probab=89.96  E-value=1  Score=38.58  Aligned_cols=92  Identities=13%  Similarity=-0.041  Sum_probs=52.8

Q ss_pred             EEEEcccee-eccccccccCCceEEeeeec-ceEEEEEEecCC---CeEEEEeCCCCCceEEecCccccccccccccccc
Q 032248           17 RVVVSPYRI-CPLGAHIDHQGGTVSAMTIN-KGILLGFVPSGD---TEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVV   91 (144)
Q Consensus        17 ~v~~APGRV-nLIGEH~DY~gG~VLp~AI~-~~~~va~~~~~d---~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~   91 (144)
                      +.++||+.+ ||-      -|.-||.+|+| .+-.+.+++.++   +.++|....  +.    -+.+.            
T Consensus        54 ~~~~aPA~~ANLG------pgfD~lG~a~d~l~d~v~~~~~~~~~~~~~~i~~~~--g~----~~~l~------------  109 (370)
T PLN02451         54 VKAFAPATVANLG------PGFDFLGCAVDGLGDFVTARVDPGVRPGEVSISEIT--GD----TGRLS------------  109 (370)
T ss_pred             EEEEeccchhhcc------cChhhhhhhhccCcCEEEEEECCCCCcccEEEEEec--cc----cccCC------------
Confidence            468999999 972      34556667776 666666666543   234444211  00    01110            


Q ss_pred             cccccccccCcCChhhHHHHHHHHHH-HcCCCCCCcEEEEEEccCCCCCCccC
Q 032248           92 HASDSAKIKEECKWGNYARGALYALQ-SRGNNLTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        92 ~~~~~~~~~~~~~Wa~Yv~Gv~~~l~-~~g~~~~~G~d~~I~g~~p~~~~~~~  143 (144)
                                ...-.|.+.-++..+. +.|... .|+++.|.++||.+.||..
T Consensus       110 ----------~~~~~Nlv~~a~~~~~~~~g~~~-~gv~I~i~k~IP~g~GLGS  151 (370)
T PLN02451        110 ----------KDPLRNCAGIAAIATMKLLGIRS-VGLSLSLHKGLPLGSGLGS  151 (370)
T ss_pred             ----------CCcccCcHHHHHHHHHHHcCCCC-CCEEEEEeCCCCCCCCccH
Confidence                      1111355544444444 345433 5999999999999999964

>PRK05905 hypothetical protein; Provisional

Probab=89.50  E-value=5.9  Score=32.40  Aligned_cols=38  Identities=13%  Similarity=-0.095  Sum_probs=27.7

Q ss_pred             hhHHH-HHHHHHHHcCCCCCCcEEEEEEccCCCCCCccCC
Q 032248          106 GNYAR-GALYALQSRGNNLTQVKMFLCCHFMNHLFALSYG  144 (144)
Q Consensus       106 a~Yv~-Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~~  144 (144)
                      .|.+. =++..|+++... ..|+++.+.-+||..+||-+|
T Consensus        66 ~nli~~ka~~~l~~~~~~-~~~~~i~l~K~IP~~aGLGgg  104 (258)
T PRK05905         66 SRLILVKTLEWLRDKYNI-KNHFKIKIKKRIPIGSGLGSG  104 (258)
T ss_pred             cchHHHHHHHHHHHHhCC-CCCeEEEEEeCCCCcCCCCCC
Confidence            56665 556666654222 248999999999999999776

>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=86.30  E-value=12  Score=30.85  Aligned_cols=38  Identities=11%  Similarity=-0.132  Sum_probs=29.0

Q ss_pred             hhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccCC
Q 032248          106 GNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSYG  144 (144)
Q Consensus       106 a~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~~  144 (144)
                      .|.+.-++..+.++-.. ..|+++.|..+||...||-+|
T Consensus        74 ~Nlv~ka~~~~~~~~~~-~~~v~I~i~K~IP~~aGLGgg  111 (297)
T PRK14613         74 QNILYKTFIKARSLFPE-LPGVKIHLTKRISPAGGLGGG  111 (297)
T ss_pred             cchHHHHHHHHHHHhCC-CCCeEEEEEeCCCccCCcccc
Confidence            67887677777664222 358999999999999999664

>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=85.38  E-value=9.2  Score=31.09  Aligned_cols=39  Identities=21%  Similarity=0.122  Sum_probs=27.4

Q ss_pred             hhHHHHHHHHHHHc--CCCCC---CcEEEEEEccCCCCCCccCC
Q 032248          106 GNYARGALYALQSR--GNNLT---QVKMFLCCHFMNHLFALSYG  144 (144)
Q Consensus       106 a~Yv~Gv~~~l~~~--g~~~~---~G~d~~I~g~~p~~~~~~~~  144 (144)
                      .|.+.=++..|.++  +....   .|+.+.|.-+||...||-+|
T Consensus        61 ~NLv~kA~~~l~~~~~~~~~~~~~~gv~I~i~K~IP~gaGLGgg  104 (257)
T PRK04181         61 ENIIYKAYQELKNKGFSNELIEFFKKKAIEVEKNIPTGAGLGGG  104 (257)
T ss_pred             CcHHHHHHHHHHHhccccccccCCCceEEEEEeCCCCcCccccc
Confidence            56775566666652  21111   48999999999999999765

>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=84.37  E-value=7.8  Score=31.63  Aligned_cols=92  Identities=12%  Similarity=-0.032  Sum_probs=55.0

Q ss_pred             EEccceeecc----ccccc-cCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccccc
Q 032248           19 VVSPYRICPL----GAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHA   93 (144)
Q Consensus        19 ~~APGRVnLI----GEH~D-Y~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~   93 (144)
                      ..||+.|||.    |..-| |+.-.-+-++|+++-.+.+.+.+...+++.  ....      +.+  +            
T Consensus         3 ~~a~aKiNl~L~i~~kr~dgyH~l~s~~~ai~l~d~v~i~~~~~~~i~~~--~~~~------~~~--~------------   60 (300)
T PRK03188          3 VRAPAKVNLHLGVGPLRDDGYHELATVFQAVSLYDEVTVTAADVLSVEVS--GEGA------DQV--P------------   60 (300)
T ss_pred             EeecceEEEeeccCCcCCCCccchHhhheehhhccEEEEEECCCcEEEEe--cCCc------cCC--C------------
Confidence            4799999975    43332 555557778888888888876532223222  1110      001  0            


Q ss_pred             cccccccCcCChhhHHHHHHHHHHHc-CCCCCCcEEEEEEccCCCCCCccC
Q 032248           94 SDSAKIKEECKWGNYARGALYALQSR-GNNLTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        94 ~~~~~~~~~~~Wa~Yv~Gv~~~l~~~-g~~~~~G~d~~I~g~~p~~~~~~~  143 (144)
                               ..=.|.+.-++..+.++ +.  ..|+.+.|.++||...||-.
T Consensus        61 ---------~~~~nl~~~~~~~~~~~~~~--~~~~~I~i~s~IP~~~GLGS  100 (300)
T PRK03188         61 ---------TDESNLAWRAAELLAEHVGR--APDVHLHIDKGIPVAGGMAG  100 (300)
T ss_pred             ---------CCCccHHHHHHHHHHHHhCC--CCCeEEEEEcCCcccCcchH
Confidence                     01134555555666553 32  35899999999999999853

>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=81.98  E-value=19  Score=29.96  Aligned_cols=38  Identities=11%  Similarity=-0.048  Sum_probs=29.1

Q ss_pred             hhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccCC
Q 032248          106 GNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSYG  144 (144)
Q Consensus       106 a~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~~  144 (144)
                      .|.+.=++..|+++... ..|+++.|..+||.+.||-+|
T Consensus        61 ~Nlv~ra~~~l~~~~g~-~~~v~I~i~K~IP~gaGLGgg   98 (288)
T PRK00650         61 SNSIWKSVALFRRYTGI-TTPVSWRVVKQIPIGAGLAGG   98 (288)
T ss_pred             ccHHHHHHHHHHHHhCC-CCCeEEEEeeCCCCcCCcCcc
Confidence            67887777777764222 248999999999999999765

>PTZ00299 homoserine kinase; Provisional

Probab=81.93  E-value=6.5  Score=33.34  Aligned_cols=90  Identities=10%  Similarity=-0.007  Sum_probs=55.7

Q ss_pred             EEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccccccc
Q 032248           17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS   96 (144)
Q Consensus        17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~   96 (144)
                      +.+++|+..-=+|     -|+-+|-+|++.+-.+.+.+.+...+++..... .       .+  +               
T Consensus         8 ~~v~vPATsANlG-----pGFDsLGlAL~lyd~v~v~~~~~~~i~i~G~~~-~-------~l--p---------------   57 (336)
T PTZ00299          8 VVLRVPATTANIG-----PAYDTLGMALSIFMELTVEHADAFSMTVEGEGS-E-------HI--S---------------   57 (336)
T ss_pred             EEEEEeccccccc-----ccHHHHhhhcccCcEEEEEECCCCEEEEecCCc-C-------CC--C---------------
Confidence            4678898876555     567788899999988888875543344431110 0       11  0               


Q ss_pred             ccccCcCChhhHHHHHHHHH-HHcCCCCCCcEEEEEEccCCCCCCcc
Q 032248           97 AKIKEECKWGNYARGALYAL-QSRGNNLTQVKMFLCCHFMNHLFALS  142 (144)
Q Consensus        97 ~~~~~~~~Wa~Yv~Gv~~~l-~~~g~~~~~G~d~~I~g~~p~~~~~~  142 (144)
                            .+-.|.+..++..+ .+.+.....|+.+.|.++||...||-
T Consensus        58 ------~~~~nlv~~a~~~~~~~~~~~~~~g~~i~i~k~IP~~~GLG   98 (336)
T PTZ00299         58 ------TDEDNMVVQACRLAFEEYAHKSMPPLKFIMHSNIPYGCGCG   98 (336)
T ss_pred             ------CCcchHHHHHHHHHHHHhcCCCCCceEEEEecCCCccCCcc
Confidence                  11234454444444 33443222489999999999999994

>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch

Probab=80.93  E-value=22  Score=31.48  Aligned_cols=57  Identities=18%  Similarity=0.203  Sum_probs=40.2

Q ss_pred             EEccceeecccccccc-CCceEEeeeecceEEEEEEecCCC------eEEEEeCCCC-CceEEec
Q 032248           19 VVSPYRICPLGAHIDH-QGGTVSAMTINKGILLGFVPSGDT------EVVLRSGQFD-GEVRFSI   75 (144)
Q Consensus        19 ~~APGRVnLIGEH~DY-~gG~VLp~AI~~~~~va~~~~~d~------~v~i~s~~~~-~~~~~~l   75 (144)
                      ++|||.+=|.||..== -+..-+-.|+++++++.+.+..+.      +|+|.|.+|. ....+..
T Consensus         2 ~sAPGKlliAGgYlVLep~y~aiVval~~r~~a~v~~~~~~~~~~~~~i~v~SpQf~~~~~~y~~   66 (454)
T TIGR01219         2 ASAPGKVLMAGGYLVLDKPYAGLVLGLNARFYAIVKPINEEVGAWKWDVRVKSPQFSDREWLYKI   66 (454)
T ss_pred             cccCceEEEecceEEecCCCcEEEEEecceEEEEEeecccccccCcceEEEeCCCCCCCceEEEE
Confidence            6899999999997421 133345578999999999765432      4688999996 3444444

This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.

>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]

Probab=80.26  E-value=30  Score=28.93  Aligned_cols=37  Identities=16%  Similarity=-0.031  Sum_probs=29.1

Q ss_pred             hHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccCC
Q 032248          107 NYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSYG  144 (144)
Q Consensus       107 ~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~~  144 (144)
                      |-+.=+...|+++.. ...|.++.|+=+||-.+||-+|
T Consensus        67 NLv~rAa~ll~~~~~-~~~~v~I~l~K~IPv~aGLGGG  103 (289)
T COG1947          67 NLVYRAAELLRKRTG-IAGGVSIHLDKNIPVGAGLGGG  103 (289)
T ss_pred             hHHHHHHHHHHHHhC-CCCCeeEEEEecCcccCcCccc
Confidence            777666666776433 3458999999999999999887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	144
2cz9_A	350	Probable galactokinase; structural genomics, NPPSF	5e-20
1pie_A	419	Galactokinase; galactose, galactosemia, transferas	1e-19
1wuu_A	399	Galactokinase; galactosemia, GHMP superfamily, tra	5e-17
3v2u_C	520	Protein GAL3; rossmann fold, GHMP superfamily, tra	4e-10
2a2c_A	478	N-acetylgalactosamine kinase; galactokinase, , tra	2e-08
1kkh_A	317	Mevalonate kinase; mixed beta sheet, phosphate-bin	2e-05
1kvk_A	395	MK, mevalonate kinase; RMK, ATP, GHMP, transferase	8e-04

>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Length = 350

 Score = 83.1 bits (206), Expect = 5e-20
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 23/107 (21%)

Query: 18  VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDE 77
            V SP R+  +G H D+  G V  M IN    +        EV+L S  F  E +FS+++
Sbjct: 3   KVKSPGRVNLIGEHTDYTYGYVMPMAINLYTKI--EAEKHGEVILYSEHFGEERKFSLND 60

Query: 78  IQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLT 124
                                +++E  W +Y +G  + L+     + 
Sbjct: 61  ---------------------LRKENSWIDYVKGIFWVLKESDYEVG 86

>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Length = 419

 Score = 82.5 bits (204), Expect = 1e-19
 Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 22/127 (17%)

Query: 1   MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
           +  K +E+ G   EV     SP RI  +G H D+ GG V   +I  G         D +V
Sbjct: 34  LTEKFAEVFGDTKEV-EYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKV 92

Query: 61  VLRSGQFD--GEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQS 118
            L S  F   G + F +DE+++                    +   W NY +G +  L+ 
Sbjct: 93  KLYSENFPKLGVIEFDLDEVEKK-------------------DGELWSNYVKGMIVMLKG 133

Query: 119 RGNNLTQ 125
            G  + +
Sbjct: 134 AGYEIDK 140

>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Length = 399

 Score = 75.1 bits (185), Expect = 5e-17
 Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 20/109 (18%)

Query: 16  VRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGE----V 71
              V +P R+  +G H D+  G V  M +    +L   P  D  V L +     +    +
Sbjct: 36  ELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVSLLTTSEGADEPQRL 95

Query: 72  RFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRG 120
           +F +   Q+                       +W NY +G +    +  
Sbjct: 96  QFPLPTAQRSLE----------------PGTPRWANYVKGVIQYYPAAP 128

>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Length = 520

 Score = 55.5 bits (133), Expect = 4e-10
 Identities = 17/120 (14%), Positives = 39/120 (32%), Gaps = 13/120 (10%)

Query: 1   MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
           + +   +      + +    SP R+  +G HID+   +V  + I+  +L       +   
Sbjct: 26  VVDAFFQTYHVKPDFI--ARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKILDEKNP 83

Query: 61  VLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRG 120
            +     D +      ++    + +     V            +W NY +  L+   S  
Sbjct: 84  SITLTNADPKFAQRKFDLPLDGSYMAIDPSVS-----------EWSNYFKCGLHVAHSYL 132

>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Length = 478

 Score = 50.7 bits (121), Expect = 2e-08
 Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 21/114 (18%)

Query: 10  GRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG 69
           G   +    V +P R+  +G HID+ G +V  M + + +L+   P     + L +     
Sbjct: 51  GSIPKFY--VRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYALQLANTNPLY 108

Query: 70  -EVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNN 122
            +   S + IQ                    K +  W NY    L  +Q     
Sbjct: 109 PDFSTSANNIQID------------------KTKPLWHNYFLCGLKGIQEHFGL 144

>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Length = 317

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 10/62 (16%), Positives = 28/62 (45%)

Query: 18 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDE 77
          ++ +P ++   G H    G    +M I+    +    + + E++L     +  +  +++E
Sbjct: 7  IIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLNLNE 66

Query: 78 IQ 79
          I+
Sbjct: 67 IK 68

>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Length = 395

 Score = 37.5 bits (86), Expect = 8e-04
 Identities = 17/116 (14%), Positives = 38/116 (32%)

Query: 18  VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDE 77
           +V +P ++   G H    G    A+ +N    L   P  + +V L       +  + +  
Sbjct: 7   LVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDVAT 66

Query: 78  IQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCH 133
           +Q       +   V A    ++++  K     R  +            + + +C  
Sbjct: 67  LQLLDTGFLEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRK 122

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	144
3v2u_C	520	Protein GAL3; rossmann fold, GHMP superfamily, tra	99.96
3k85_A	357	D-glycero-D-manno-heptose 1-phosphate kinase; bact	99.9
1pie_A	419	Galactokinase; galactose, galactosemia, transferas	99.89
2a2c_A	478	N-acetylgalactosamine kinase; galactokinase, , tra	99.88
1wuu_A	399	Galactokinase; galactosemia, GHMP superfamily, tra	99.88
3k17_A	365	LIN0012 protein; protein structure initiative II(P	99.83
1kvk_A	395	MK, mevalonate kinase; RMK, ATP, GHMP, transferase	99.81
2pg9_A	337	Phosphomevalonate kinase; GHMP kinase superfamily,	99.77
2cz9_A	350	Probable galactokinase; structural genomics, NPPSF	99.73
1kkh_A	317	Mevalonate kinase; mixed beta sheet, phosphate-bin	99.7
2x7i_A	308	Mevalonate kinase; transferase; HET: CIT; 2.20A {S	99.61
4hac_A	321	Mevalonate kinase; GHMP, ATP binding, phosphorylat	99.59
3gon_A	335	Phosphomevalonate kinase; GHMP kinase superfamily,	99.49
2ww4_A	283	4-diphosphocytidyl-2C-methyl-D-erythritol kinase;	99.26
2gs8_A	317	Mevalonate pyrophosphate decarboxylase; streptococ	99.23
2hfs_A	332	Mevalonate kinase, putative; GHMP kinase, trypanos	99.22
3qt5_A	332	Mevalonate diphosphate decarboxylase; GHMP kinase	99.15
2v8p_A	271	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	99.15
2oi2_A	292	Mevalonate kinase; enzyme-inhibitor complex, trans	99.02
1h72_C	296	HK, homoserine kinase; transferase, threonine bios	98.93
1uek_A	275	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k	98.66
3pyf_A	306	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	98.0
1fi4_A	416	Mevalonate 5-diphosphate decarboxylase; mixed alph	97.7
3hul_A	298	HSK, HK, homoserine kinase; structural genomics, p	93.01

>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*

Probab=99.96  E-value=6.2e-30  Score=223.36  Aligned_cols=122  Identities=18%  Similarity=0.203  Sum_probs=98.1

Q ss_pred             hhHhhhhhCCCCceeEEEEccceeeccccccccCCceEEeeeecceEEEEEEec--CCCeEEEEeCCCC-CceEEec--C
Q 032248            2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPS--GDTEVVLRSGQFD-GEVRFSI--D   76 (144)
Q Consensus         2 ~~~F~~~fG~~p~~~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~--~d~~v~i~s~~~~-~~~~~~l--~   76 (144)
                      .+.|++.||.+|+  .+++|||||||||||||||||+|||||||+++++++++|  +|++|+|+|.+.+ +..+|++  +
T Consensus        27 ~~~F~~~fg~~p~--~v~~APGRVnLiGEHtDyngG~VLp~AI~~~~~vav~~~~~~d~~i~i~S~~~~~~~~~~~l~~~  104 (520)
T 3v2u_C           27 VDAFFQTYHVKPD--FIARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKILDEKNPSITLTNADPKFAQRKFDLPLD  104 (520)
T ss_dssp             HHHHHHHHSSCCS--EEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEECCCSSCEEEEEESSTTSCCEEEECCTT
T ss_pred             HHHHHHHhCCCCC--EEEEcceeEEEeccCeeeCCCEEEEEEeecceEEEEEeccCCCCEEEEEECCCCCCceEEEeccC
Confidence            5789999999998  789999999999999999999999999999999999998  8899999998854 3466777  3


Q ss_pred             ccccccccccccccccccccccccCcCChhhHHHHHH----HHHHHc------CCCCCCcEEEEEEccCCCCCCcc
Q 032248           77 EIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGAL----YALQSR------GNNLTQVKMFLCCHFMNHLFALS  142 (144)
Q Consensus        77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv~Gv~----~~l~~~------g~~~~~G~d~~I~g~~p~~~~~~  142 (144)
                      +....                ...+..+|+||++|++    +.|++.      |... .|||++|.|+||.++|||
T Consensus       105 ~~~~~----------------i~~~~~~W~~Yv~g~i~~v~~~l~~~~~~~~~g~~~-~G~~i~i~s~vP~gsGLS  163 (520)
T 3v2u_C          105 GSYMA----------------IDPSVSEWSNYFKCGLHVAHSYLKKIAPERFNNTPL-VGAQIFCQSDIPTGGGLS  163 (520)
T ss_dssp             CCCCC----------------CCTTSCCHHHHHHHHHHHHHHHHHHHCHHHHSSSCC-CCEEEEEEECCCTTSSHH
T ss_pred             ccccc----------------cCcccccHHHHHHHHHHHHHHHHHhhcccccccCCC-CceEEEEecCCCCCCCHH
Confidence            21000                0124578999999865    345543      3343 699999999999999984

>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}

Probab=99.90  E-value=1.4e-23  Score=174.52  Aligned_cols=106  Identities=11%  Similarity=-0.041  Sum_probs=92.3

Q ss_pred             EEEEccceeecccccccc------CCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccc
Q 032248           17 RVVVSPYRICPLGAHIDH------QGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHV   90 (144)
Q Consensus        17 ~v~~APGRVnLIGEH~DY------~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~   90 (144)
                      ++++||||||||||||||      +||.|||+|||+++++++++++|+.++|.|.+++...+|++++.            
T Consensus         4 i~~~APgRvnL~GehtD~~~~~~~~gG~vl~~AId~~~~v~i~~~~d~~i~i~s~~~~~~~~~~~~~~------------   71 (357)
T 3k85_A            4 VRSKAPLRLGLAGGGSDVSPYSDIYGGLILNATINLYAYCTIEETNSGRIEINAYDAQCCKSYLSMSQ------------   71 (357)
T ss_dssp             EEEEEEEEEEEECTTTTSTTHHHHTCEEEEEEEEEEEEEEEEEECSSSEEEEEETTTTEEEEEECCSS------------
T ss_pred             EEEECceEEEEecCCccCcchhhcCCCEEEEEEEeCcEEEEEEECCCCeEEEEECCCCceEEEecccc------------
Confidence            478999999999999999      99999999999999999999999999999988875556666531            


Q ss_pred             ccccccccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248           91 VHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        91 ~~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~  143 (144)
                               .+..+|.||++++++.|++.+.....||++.|.++||.+.||+.
T Consensus        72 ---------~~~~~~~~~v~~~~~~l~~~~~~~~~g~~i~i~~~iP~g~GLgS  115 (357)
T 3k85_A           72 ---------LEIDGEASLIKGVYNRIIRDYRLEPKSFKITTYNDAPAGSGLGT  115 (357)
T ss_dssp             ---------CCCCSSSHHHHHHHHHHHHHTTCCCCCEEEEEEESSCSSSSSCH
T ss_pred             ---------ccccchHHHHHHHHHHHHHhcCCCCCCEEEEEecCCCCCCCchH
Confidence                     13468999999999999987764236999999999999999974

>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7

Probab=99.89  E-value=1.5e-22  Score=170.67  Aligned_cols=122  Identities=30%  Similarity=0.392  Sum_probs=102.5

Q ss_pred             hhHhhhhhCCCCceeEEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCC--CceEEecCccc
Q 032248            2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFD--GEVRFSIDEIQ   79 (144)
Q Consensus         2 ~~~F~~~fG~~p~~~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~--~~~~~~l~~l~   79 (144)
                      .+.|++.||.+|+. .+++|||||||+|||+||+||.||++||++++++.+++++++.+++.+.+++  ...+++++++.
T Consensus        35 ~~~f~~~~g~~~~~-~~~~APgkv~L~Geh~d~~G~~~l~~aI~l~~~v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~~~  113 (419)
T 1pie_A           35 TEKFAEVFGDTKEV-EYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKVKLYSENFPKLGVIEFDLDEVE  113 (419)
T ss_dssp             HHHHHHHHSCCCSC-EEEEEEEEEEEECCSCTTTTCEEEEEEEEEEEEEEEEECSSSEEEEEETTCGGGCCEEEETTCTT
T ss_pred             HHHHHHHhCCCCce-EEEEeeEEEEEcccceeeCCCEEEEEEEcccEEEEEEECCCCEEEEEECCCCCcceeEEeccccc
Confidence            57899999999862 4789999999999999999999999999999999999998888999887764  34556665431


Q ss_pred             cccccccccccccccccccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248           80 QPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~  143 (144)
                       +                  .+..+|.||+++++..|++.++....|+++.|.++||.+.||+.
T Consensus       114 -~------------------~~~~~~~n~v~~~~~~l~~~g~~~~~g~~i~i~s~IP~gaGLGS  158 (419)
T 1pie_A          114 -K------------------KDGELWSNYVKGMIVMLKGAGYEIDKGFELLIKGEIPTASGLSS  158 (419)
T ss_dssp             -S------------------CCTTCTHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCTTSSSCH
T ss_pred             -C------------------CCCcCHHHHHHHHHHHHHHhCCCCCCCEEEEEECCCCCCCChhH
Confidence             1                  13468999999999999887665546999999999999999974

>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*

Probab=99.88  E-value=4.1e-22  Score=171.41  Aligned_cols=122  Identities=22%  Similarity=0.200  Sum_probs=95.0

Q ss_pred             hhHhhhhhCCCCceeEEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCC-CceEEecCcccc
Q 032248            2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFD-GEVRFSIDEIQQ   80 (144)
Q Consensus         2 ~~~F~~~fG~~p~~~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~-~~~~~~l~~l~~   80 (144)
                      .+.|++.||.+|+  ++++|||||||+|||+||+|+.||++||++++++++++++++.++|.+.+.+ ...+++++++..
T Consensus        43 ~~~f~~~fg~~~~--~~~~APgrv~L~Geh~D~~g~~vl~~AI~~~~~v~v~~~~~~~i~i~~~~~~~~~~~~~~~~l~~  120 (478)
T 2a2c_A           43 KEMFNSKFGSIPK--FYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYALQLANTNPLYPDFSTSANNIQI  120 (478)
T ss_dssp             HHHHHHHHSSCCS--EEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEECSSSCEEEEESSTTSCCEEECCCCC--
T ss_pred             HHHHHHHhCCCCC--EEEEeceEEEEeccceeeCCCeEEEEEecccEEEEEEECCCCeEEEEECCCCCcceeccchhccc
Confidence            4789999999997  7899999999999999999999999999999999999998888999887643 123333343211


Q ss_pred             ccccccccccccccccccccCcCChhhHHHHHHHHHHHc-CCCCCCcEEEEEEccCCCCCCccC
Q 032248           81 PRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSR-GNNLTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~-g~~~~~G~d~~I~g~~p~~~~~~~  143 (144)
                                        ...+..|.||++.++..+.+. +.....||++.|.|+||.+.||+.
T Consensus       121 ------------------~~~~~~~~n~v~~a~~~v~~~~~~~~~~g~~i~i~s~IP~g~GLgS  166 (478)
T 2a2c_A          121 ------------------DKTKPLWHNYFLCGLKGIQEHFGLSNLTGMNCLVDGNIPPSSGLSS  166 (478)
T ss_dssp             ------------------CCSSCCHHHHHHHHHHHHHHHTTCCSCCCEEEEEEECSCTTSSSCH
T ss_pred             ------------------CCCcccHHHHHHHHHHHHHHHHhccCCCceEEEEECCCCCCCCchH
Confidence                              124578999996655554432 211136999999999999999973

>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7

Probab=99.88  E-value=5e-22  Score=166.39  Aligned_cols=121  Identities=22%  Similarity=0.239  Sum_probs=98.8

Q ss_pred             hhHhhhhhCCCCceeEEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCc----eEEecCc
Q 032248            2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGE----VRFSIDE   77 (144)
Q Consensus         2 ~~~F~~~fG~~p~~~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~----~~~~l~~   77 (144)
                      .+.|++.||.+|+  ++++|||||||+|||+||+||.||++||++++++++++++++.++|.+.+++..    .+++++.
T Consensus        24 ~~~f~~~~~~~~~--~~~~APgkv~L~Geh~Dy~~~~~l~~ai~~~~~v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~~~  101 (399)
T 1wuu_A           24 RRAFREEFGAEPE--LAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPT  101 (399)
T ss_dssp             HHHHHHHHSSCCS--EEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEETTCEEEEEECCSSSCSCSEEEEECCC
T ss_pred             HHHHHHHhCCCCC--EEEEeeeeEEEeccccccCCCEEEeEEecccEEEEEEECCCCeEEEEECCCCCccccceEEecCc
Confidence            4789999999997  689999999999999999999999999999999999999888999998776522    3455442


Q ss_pred             cccccccccccccccccccccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248           78 IQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        78 l~~~~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~  143 (144)
                      +. .               .......+|.||+++++..|  ++... .|+++.|.++||.+.||+.
T Consensus       102 ~~-~---------------~~~~~~~~~~n~v~~a~~~l--~~~~~-~g~~i~i~s~IP~gaGLGS  148 (399)
T 1wuu_A          102 AQ-R---------------SLEPGTPRWANYVKGVIQYY--PAAPL-PGFSAVVVSSVPLGGGLSS  148 (399)
T ss_dssp             SS-C---------------CCCCCSSGGGHHHHHHHHHC--SSSCC-CEEEEEEEECSCTTSSSCH
T ss_pred             cc-c---------------ccccCCCCHHHHHHHHHHHh--cCCCC-CCeEEEEECCCCCCCCccH
Confidence            11 0               00124568999999999988  45544 5999999999999999974

>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}

Probab=99.83  E-value=2.2e-20  Score=155.93  Aligned_cols=103  Identities=17%  Similarity=0.192  Sum_probs=80.9

Q ss_pred             EEEEccceeeccccccccC-CceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccccccc
Q 032248           17 RVVVSPYRICPLGAHIDHQ-GGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASD   95 (144)
Q Consensus        17 ~v~~APGRVnLIGEH~DY~-gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~   95 (144)
                      .+++|||||||||||+||+ ||+|||+||++++++++++++|.  +|.+.+++...+++++...                
T Consensus         7 i~~~APGrv~L~GEh~~~~~g~~~l~~Ai~~~~~v~v~~~~~~--~i~s~~~~~~~~~~~~~~~----------------   68 (365)
T 3k17_A            7 LQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDSERN--ELWIPHYENPVSWPIGGEL----------------   68 (365)
T ss_dssp             EEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSC--EEECTTCSSCBCCCTTSCC----------------
T ss_pred             EEEEecceEEEecccEEecCCCEEEEEEccCcEEEEEEECCCc--EEEecCCCcceeeecccCC----------------
Confidence            5799999999999999996 99999999999999999999876  5778777654444443210                


Q ss_pred             cccccCcCChhhHHHHHHHHHH----HcCCCCCCcEEEEEEccCCC----CCCcc
Q 032248           96 SAKIKEECKWGNYARGALYALQ----SRGNNLTQVKMFLCCHFMNH----LFALS  142 (144)
Q Consensus        96 ~~~~~~~~~Wa~Yv~Gv~~~l~----~~g~~~~~G~d~~I~g~~p~----~~~~~  142 (144)
                         ......| +|++++++.+.    +.|... .||++.|.++||.    ..||+
T Consensus        69 ---~~~~~~~-~yv~~~i~~~~~~~~~~g~~~-~g~~i~i~s~iP~~~g~~~GLg  118 (365)
T 3k17_A           69 ---KPDGEHW-TFTAEAINIATTFLKSEGIEL-TPVKMVIETELIDQSGAKYGLG  118 (365)
T ss_dssp             ---CCSCGGG-HHHHHHHHHHHHHHHHTTCCC-CCEEEEEEESSBCTTSCBCSSC
T ss_pred             ---CCCCChH-HHHHHHHHHHHHHHHhcCCCC-CCEEEEEEcCCCCCCCCCCccc
Confidence               1134568 99999998765    346655 5999999999995    56776

>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A

Probab=99.81  E-value=6.3e-20  Score=153.24  Aligned_cols=127  Identities=13%  Similarity=0.073  Sum_probs=84.4

Q ss_pred             EEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccc-ccccccccc-cc
Q 032248           17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRN-SVKKHHVVH-AS   94 (144)
Q Consensus        17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~-~~~~~~~~~-~~   94 (144)
                      ++++|||||||||||+||+||.|||+||++++++++++++++.+++.+.+.+...+++++++..... ...+.+... ..
T Consensus         6 ~~~~APgrv~L~Geh~d~~g~~~l~~ai~~~~~v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (395)
T 1kvk_A            6 LLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDVATLQLLDTGFLEQGDVPAPTL   85 (395)
T ss_dssp             EEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECSSSEEEEEETTTTEEEEEEHHHHHTSCC-------------
T ss_pred             EEEEeCeEEEEecCCeeeECCEeeeeEeeccEEEEEEECCCCeEEEEcCCCCceEEEEhHhhhhhhcccccccccccccH
Confidence            6799999999999999999999999999999999999999999999887765334666654311000 000000000 00


Q ss_pred             cc----ccccCcCChhhHH-----HHHHHHHHHc-CCC-CCCcEEEEEEccCCCCCCccC
Q 032248           95 DS----AKIKEECKWGNYA-----RGALYALQSR-GNN-LTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        95 ~~----~~~~~~~~Wa~Yv-----~Gv~~~l~~~-g~~-~~~G~d~~I~g~~p~~~~~~~  143 (144)
                      ..    .......+|.+|+     +++++.+.+. +.. ...|+++.|.++||.+.||+.
T Consensus        86 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~g~~i~i~s~iP~g~GLGS  145 (395)
T 1kvk_A           86 EQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSELPPGAGLGS  145 (395)
T ss_dssp             ---CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEESSCTTSSSCH
T ss_pred             HHHHHHHHHhccccccchhhHHHHHHHHHHHHHHhccccCCCCEEEEEEecCCCCCCccH
Confidence            00    0001134899994     4444445442 331 136999999999999999974

>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*

Probab=99.73  E-value=6.8e-18  Score=137.61  Aligned_cols=103  Identities=20%  Similarity=0.178  Sum_probs=82.3

Q ss_pred             EEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccccccc
Q 032248           17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS   96 (144)
Q Consensus        17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~   96 (144)
                      .+++|||||||+|||+||+|+.+|++||++++++.+++++++.+++.+.+.+...++ ++   .                
T Consensus         2 ~~~~aP~ki~L~Ge~~d~~~~~~l~~ai~~~~~v~v~~~~~~~i~i~~~~~~~~~~~-l~---~----------------   61 (350)
T 2cz9_A            2 IKVKSPGRVNLIGEHTDYTYGYVMPMAINLYTKIEAEKHGEVILYSEHFGEERKFSL-ND---L----------------   61 (350)
T ss_dssp             EEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEESSEEEEETTTTEEEEECT-TC---C----------------
T ss_pred             eEEEeccEEEEeecChhhCCCEEEEEEeeceEEEEEEECCCCeEEEEECCCCccccc-cC---C----------------
Confidence            368999999999999999999999999999999999998877777765433211111 21   0                


Q ss_pred             ccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248           97 AKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        97 ~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~  143 (144)
                         .+...|.||+++++..|++.+... .|+++.|.++||.+.||+.
T Consensus        62 ---~~~~~~~~~~~~~~~~l~~~~~~~-~g~~i~i~s~IP~g~GLGS  104 (350)
T 2cz9_A           62 ---RKENSWIDYVKGIFWVLKESDYEV-GGIKGRVSGNLPLGAGLSS  104 (350)
T ss_dssp             ---CCCSSTHHHHHHHHHHHHHTTCCC-CEEEEEEECSCCTTSSSCH
T ss_pred             ---CCCCcHHHHHHHHHHHHHhcCCCC-CCeEEEEECCCCCCCCcch
Confidence               124689999999999998776554 5999999999999999974

>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A

Probab=99.70  E-value=1.3e-16  Score=128.82  Aligned_cols=107  Identities=12%  Similarity=0.161  Sum_probs=84.6

Q ss_pred             EEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccccccc
Q 032248           17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS   96 (144)
Q Consensus        17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~   96 (144)
                      +.++|||||||+|||+||+|+.+|++||++++++.++++++..+++.+.+.+...++.+++.. +               
T Consensus         6 ~~~~APgki~L~geh~~~~G~~~l~~ai~~~~~v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~-~---------------   69 (317)
T 1kkh_A            6 MIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLNLNEIK-N---------------   69 (317)
T ss_dssp             EEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECCSSEEEEEETTTTEEEEEETTTGG-G---------------
T ss_pred             EEEEccEEEEEEcCCeeEcCCEEEEEEecCeEEEEEEECCCCeEEEEeCCCCCceEEEeccCC-c---------------
Confidence            578999999999999999999999999999999999999888898887765544556654211 1               


Q ss_pred             ccccCcCChhhHHHHHHHHHHHc----CCCCCCcEEEEEEccCCCCCCccC
Q 032248           97 AKIKEECKWGNYARGALYALQSR----GNNLTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        97 ~~~~~~~~Wa~Yv~Gv~~~l~~~----g~~~~~G~d~~I~g~~p~~~~~~~  143 (144)
                         ..+..| +|++.++..+.+.    +.....|+++.|.++||...||+.
T Consensus        70 ---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~~~iP~~~GLGs  116 (317)
T 1kkh_A           70 ---INPNNF-GDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGS  116 (317)
T ss_dssp             ---CCGGGS-GGGHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCSSSSSCH
T ss_pred             ---cCcccc-hHHHHHHHHHHHHHHhhcccCCCCeEEEEecCCCCCCCchH
Confidence               134568 8888888877652    333236999999999999999964

>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}

Probab=99.61  E-value=1.8e-15  Score=121.66  Aligned_cols=95  Identities=15%  Similarity=0.064  Sum_probs=76.5

Q ss_pred             EEEEccceeeccccccccCCceEEeeeecce-EEEEEEecCCCe-EEEEeCCCCCceEEecCcccccccccccccccccc
Q 032248           17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKG-ILLGFVPSGDTE-VVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHAS   94 (144)
Q Consensus        17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~-~~va~~~~~d~~-v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~   94 (144)
                      ..++|||||||+|||+||+|+.+|+++|++. +.+.++++++.. +++.+..++.       .+  +             
T Consensus         7 ~~~~APgkinL~Ge~~d~~g~~~l~~ai~~~~~~v~v~~~~~~~~i~~~~~~~~~-------~~--~-------------   64 (308)
T 2x7i_A            7 GYGESTGKIILIGEHAVTFGEPAIAVPFNAGKIKVLIEALESGNYSSIKSDVYDG-------ML--Y-------------   64 (308)
T ss_dssp             EEEEEEEEEEEEEBTTCCTTSCEEEEEEEEEEEEEEEEECCTTCCCEEEEEECSS-------CC--C-------------
T ss_pred             eEEEEeeEEEEEecCeeecCCeEEEEEEcCCEEEEEEEECCCCCeeEEEecCCCC-------Ch--h-------------
Confidence            5789999999999999999999999999985 889999987766 6666533321       11  1             


Q ss_pred             ccccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248           95 DSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        95 ~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~  143 (144)
                            ...+|.||+++++..+.+.   . .|+++.|.++||...||+.
T Consensus        65 ------~~~~~~~~v~~~~~~~~~~---~-~g~~i~i~~~iP~g~GLGS  103 (308)
T 2x7i_A           65 ------DAPDHLKSLVNRFVELNNI---T-EPLAVTIQTNLPPSRGLGS  103 (308)
T ss_dssp             ------CTTSCHHHHHHHHHHHTTC---C-SCEEEEEEECCCTTSSSCH
T ss_pred             ------hhhHHHHHHHHHHHHHHhh---C-CCeEEEEeccCCCCCCccH
Confidence                  1247999999999888653   2 4999999999999999974

>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}

Probab=99.59  E-value=7.3e-15  Score=120.13  Aligned_cols=93  Identities=11%  Similarity=0.010  Sum_probs=69.8

Q ss_pred             EEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccccccc
Q 032248           17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS   96 (144)
Q Consensus        17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~   96 (144)
                      +.++|||||||+|||+||+||.+|++||++++++.++++++  ++|.+.+..       ..+..                
T Consensus        22 i~~~APgkinL~GeH~~~~Gg~~l~~aI~~~~~v~v~~~~~--i~i~~~~~~-------~~~~~----------------   76 (321)
T 4hac_A           22 VSCSAPGKIYLFGEHAVVYGETAIACAVELRTRVRAELNDS--ITIQSQIGR-------TGLDF----------------   76 (321)
T ss_dssp             EEEEEEEEEEEECTTTGGGTCCEEEEEEEEEEEEEEEECSS--EEEEETTEE-------ESSCT----------------
T ss_pred             EEEEeeEEEEEEccCEEEcCCEEEEEEeccCEEEEEEECCC--EEEEECCCC-------ccccc----------------
Confidence            57899999999999999999999999999999999998653  888774421       11110                


Q ss_pred             ccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248           97 AKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        97 ~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~  143 (144)
                          ....|.   +.+...|++.+  ...|+++.|.++||...||+.
T Consensus        77 ----~~~~~~---~~~~~~l~~~~--~~~g~~i~i~~~iP~g~GLGS  114 (321)
T 4hac_A           77 ----EKHPYV---SAVIEKMRKSI--PINGVFLTVDSDIPVGSGLGS  114 (321)
T ss_dssp             ----TTSHHH---HHHHHHHTTTS--CCCCEEEEEEECCCSCTTCCH
T ss_pred             ----chhHHH---HHHHHHHHHhC--CCCCEEEEEECCCCCCCCccH
Confidence                122444   44555555444  235999999999999999974

>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A

Probab=99.49  E-value=1.1e-13  Score=111.36  Aligned_cols=100  Identities=18%  Similarity=0.033  Sum_probs=77.1

Q ss_pred             EEEEccceeeccccc-cccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccccccc
Q 032248           17 RVVVSPYRICPLGAH-IDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASD   95 (144)
Q Consensus        17 ~v~~APGRVnLIGEH-~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~   95 (144)
                      ..++|||+|.|+||| +.|.|+.+|++||++++++.++++++.+  |++..++....+..+                   
T Consensus         2 i~v~apGKviL~GEhaVv~~G~~Ala~ai~~~~~v~i~~~~~~~--i~~~~~~~~~~~~~~-------------------   60 (335)
T 3gon_A            2 IAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDSYR--IYSDMFDFAVDLRPN-------------------   60 (335)
T ss_dssp             EEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSCE--EEETTSSSCBCSSCC-------------------
T ss_pred             EEEEECCEEEEEeeeeEEcCCCcEEEEEecceEEEEEEECCCCE--EEEeCCCcccccCcC-------------------
Confidence            368999999999999 8999999999999999999999998765  455555432111111                   


Q ss_pred             cccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCC---CCcc
Q 032248           96 SAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHL---FALS  142 (144)
Q Consensus        96 ~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~---~~~~  142 (144)
                          .+..-|.+|++++...|.+.+... .||++.|.|++|..   +|||
T Consensus        61 ----~~~~~~~~~i~~~~~~l~~~~~~~-~~~~i~I~s~lp~~~~~~GLg  105 (335)
T 3gon_A           61 ----PDYSLIQETIALMGDFLAVRGQNL-RPFSLAIYGKMEREGKKFGLG  105 (335)
T ss_dssp             ----TTTHHHHHHHHHHHHHHHHTTCCC-CCEEEEEECCSEETTEECSSC
T ss_pred             ----CCcHHHHHHHHHHHHHHHHcCCCC-CceEEEEEecCCcccCCCCcc
Confidence                122346778888888888888776 59999999999966   4665

>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*

Probab=99.26  E-value=1.1e-11  Score=99.66  Aligned_cols=91  Identities=12%  Similarity=-0.039  Sum_probs=72.5

Q ss_pred             EEEccceeec----cccccc-cCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccc
Q 032248           18 VVVSPYRICP----LGAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVH   92 (144)
Q Consensus        18 v~~APGRVnL----IGEH~D-Y~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~   92 (144)
                      .++|||||||    +|||.| |+++.++++||+++..+.+++++++.+++.+..         +.+  +           
T Consensus         4 ~~~apaKinL~L~v~g~~~dGyh~l~sl~~ai~l~~~v~v~~~~~~~i~i~~~~---------~~~--~-----------   61 (283)
T 2ww4_A            4 QWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIELRDDGDIRLLTPV---------EGV--E-----------   61 (283)
T ss_dssp             EEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEESSSCEEECSCB---------TTB--C-----------
T ss_pred             cccCceeEEeeeeccCCCCCCCcceEEEEEECCCCcEEEEEECCCCcEEEEeCC---------CCC--C-----------
Confidence            4689999999    999999 999999999999999999999877677765321         111  1           


Q ss_pred             ccccccccCcCChhhHHHHHHHHHHHc-------CCCCCCcEEEEEEccCCCCCCccC
Q 032248           93 ASDSAKIKEECKWGNYARGALYALQSR-------GNNLTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        93 ~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~-------g~~~~~G~d~~I~g~~p~~~~~~~  143 (144)
                                 .-.||+..++..+.++       |.  ..|+++.|.++||.+.||+.
T Consensus        62 -----------~~~nlv~~a~~~~~~~~~~~~~~g~--~~g~~i~i~~~IP~g~GLGs  106 (283)
T 2ww4_A           62 -----------HEDNLIVRAARLLMKTAADSGRLPT--GSGANISIDKRLPMGGGLGG  106 (283)
T ss_dssp             -----------GGGSHHHHHHHHHHHHHHHTTCSCT--TCEEEEEEECCCC-CTTSCH
T ss_pred             -----------CcccHHHHHHHHHHHHhhhhcccCC--CCceEEEEEeCCCCCCCccH
Confidence                       1159999999888764       54  35999999999999999974

>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}

Probab=99.23  E-value=4.6e-12  Score=102.60  Aligned_cols=101  Identities=14%  Similarity=0.007  Sum_probs=73.9

Q ss_pred             EEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccccccc
Q 032248           17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS   96 (144)
Q Consensus        17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~   96 (144)
                      ..++||+||+|||+|+||++|++||+.....+.+. ..+.+-+++..+.+++ ..++.++..  .               
T Consensus         9 ~~~~ap~~i~l~~~~g~~~~g~~lp~~dslg~al~-~l~~~~~v~~~~~~~~-~~~~~~~g~--~---------------   69 (317)
T 2gs8_A            9 ITVTSYANIAIIKYWGKENQAKMIPSTSSISLTLE-NMFTTTSVSFLPDTAT-SDQFYINGI--L---------------   69 (317)
T ss_dssp             EEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEE-EEEEEEEEEECCTTCC-SCEEEETTE--E---------------
T ss_pred             EEEEecCcEEEEeeeeeccCCcccCCCCceEEEee-cccceEEEEEEcCCCC-eEEEEECCC--c---------------
Confidence            57999999999999999999999999988777765 3444333433233322 234544421  1               


Q ss_pred             ccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248           97 AKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        97 ~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~  143 (144)
                          ...+|.||++.++..+.+.+.   .|+++.+.++||.+.||..
T Consensus        70 ----~~~~~~n~v~~~~~~~~~~~~---~g~~I~i~~~IP~~~GLGS  109 (317)
T 2gs8_A           70 ----QNDEEHTKISAIIDQFRQPGQ---AFVKMETQNNMPTAAGLSS  109 (317)
T ss_dssp             ----CCHHHHHHHHHHHTTTCCTTC---CCEEEEEECCSCGGGCCCH
T ss_pred             ----cccchHHHHHHHHHHHHHhcC---CCeEEEEeCCCCCCCchHH
Confidence                123799999999998886543   5899999999999999963

>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*

Probab=99.22  E-value=1.6e-11  Score=99.47  Aligned_cols=98  Identities=8%  Similarity=-0.072  Sum_probs=68.1

Q ss_pred             EEEEccceeeccccccccCCceEEeeeecceEEEEEEecC-CCeEEEEeCCCCCceEEecCccccccccccccccccccc
Q 032248           17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSG-DTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASD   95 (144)
Q Consensus        17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~-d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~   95 (144)
                      ..++|||||||+|||.||+|+.++.+||++++.+.+++++ ++.+++.+...      .++.                  
T Consensus        14 ~~~~ApgKi~L~Geh~~~~G~~~l~~ai~~~~~v~v~~~~~~~~~~~~~~~~------~~~~------------------   69 (332)
T 2hfs_A           14 GKNIGYGKVILFGEHFVVHGAEAIVAGISEYTECRLEINPGVPGLQVDDQRP------AIPG------------------   69 (332)
T ss_dssp             SCCEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEETTCCSEEEEECCC------CCTT------------------
T ss_pred             EEEEEeEEEEEecCCEEEcCCeEEEEEecccEEEEEEEcCCCCCeEEEecCc------cccc------------------
Confidence            4789999999999999999999999999999999999875 34555543221      0110                  


Q ss_pred             cccccCcCChhhHHHHHHH-HHHHcCCCC-CCcEEEEEEccCCCCCCccC
Q 032248           96 SAKIKEECKWGNYARGALY-ALQSRGNNL-TQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        96 ~~~~~~~~~Wa~Yv~Gv~~-~l~~~g~~~-~~G~d~~I~g~~p~~~~~~~  143 (144)
                           ......|.+.-++. .+...+... ..|+++.|.++||...||+.
T Consensus        70 -----~~~~~~~~~~~a~~~~~~~~g~~~~~~g~~i~i~~~iP~g~GLGS  114 (332)
T 2hfs_A           70 -----YIAQKRDEQIKAHQLVLDHLKVDLSGDGLKMFIGGPLVPSSGIGA  114 (332)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHTTBCCSSSEEEEEEECSCCCCTTSCH
T ss_pred             -----cccccchhHHHHHHHHHHHcCCccCCCceEEEEEcCCCCCCCccH
Confidence                 00122344433343 444445432 25999999999999999964

>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A

Probab=99.15  E-value=3.6e-11  Score=99.02  Aligned_cols=101  Identities=10%  Similarity=0.008  Sum_probs=76.3

Q ss_pred             EEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccccccc
Q 032248           17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS   96 (144)
Q Consensus        17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~   96 (144)
                      ..++||+||+|||+|+||+++.+||+.....+.+. .++.+-+++ .+.++++ .++.++...                 
T Consensus        10 ~~~~ap~nialiky~gk~~~~~~lP~~dslglal~-~~~~~~~v~-~~~~~~~-~~~~i~g~~-----------------   69 (332)
T 3qt5_A           10 GKARAHTNIALIKYWGKADETYIIPMNNSLSVTLD-RFYTETKVT-FDPDFTE-DCLILNGNE-----------------   69 (332)
T ss_dssp             EEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEE-EEEEEEEEE-EETTCSS-CEEEETTEE-----------------
T ss_pred             EEEEecCcEEEEeeeeeccCCccccCCCceEEEec-CCCCeeEEE-EcCCCCc-cEEEECCcc-----------------
Confidence            47899999999999999999999999999888887 344444455 3444432 455554311                 


Q ss_pred             ccccCcCChhhHHHHHHHHHHHc-CCCCCCcEEEEEEccCCCCCCccC
Q 032248           97 AKIKEECKWGNYARGALYALQSR-GNNLTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        97 ~~~~~~~~Wa~Yv~Gv~~~l~~~-g~~~~~G~d~~I~g~~p~~~~~~~  143 (144)
                          ...+|.|++..++..+.++ +.  ..|+++.+.++||...||..
T Consensus        70 ----~~~~~~n~v~~~~~~~~~~~~~--~~~~~i~~~~~iP~~~GLgS  111 (332)
T 3qt5_A           70 ----VNAKEKEKIQNYMNIVRDLAGN--RLHARIESENYVPTAAGLAS  111 (332)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHTC--CCEEEEEEEEESCGGGTCCC
T ss_pred             ----CCcchHHHHHHHHHHHHHhcCC--CCCEEEEEecCCCCCCCcch
Confidence                1235999999999988774 33  35899999999999999964

>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*

Probab=99.15  E-value=8.4e-11  Score=93.45  Aligned_cols=88  Identities=13%  Similarity=-0.050  Sum_probs=71.3

Q ss_pred             EEEEccceeec----cccccc-cCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccc
Q 032248           17 RVVVSPYRICP----LGAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVV   91 (144)
Q Consensus        17 ~v~~APGRVnL----IGEH~D-Y~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~   91 (144)
                      ..++|||||||    +|+|.| |+++.+++++|+++..+ +++  ++.+++..           +.+             
T Consensus         5 ~~~~aPakinl~l~v~g~r~dgyh~~~sl~~ai~l~~~v-~~~--~~~i~i~~-----------~~~-------------   57 (271)
T 2v8p_A            5 IKVLSPAKINLGLWVLGRLPSGYHEILTLYQEIPFYDEI-YIR--EGVLRVET-----------NIG-------------   57 (271)
T ss_dssp             EEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEE-EEE--ESSCEEEE-----------SSC-------------
T ss_pred             EEEeecceEEeeEeecccCCCCCceEEEEEEEcCcccEE-EEe--CCeEEEEe-----------CCC-------------
Confidence            46899999999    999999 99999999999999999 887  34555543           111             


Q ss_pred             cccccccccCcCChhhHHHHHHHHHHHc-CCCCCCcEEEEEEccCCCCCCccC
Q 032248           92 HASDSAKIKEECKWGNYARGALYALQSR-GNNLTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        92 ~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~-g~~~~~G~d~~I~g~~p~~~~~~~  143 (144)
                                ..+|.||+..++..+.++ +..  .|+++.|.++||.+.||..
T Consensus        58 ----------~~~~~nlv~~a~~~~~~~~g~~--~g~~i~i~~~IP~g~GLGs   98 (271)
T 2v8p_A           58 ----------IPQEENLVYKGLREFERITGIE--INYSIFIQKNIPPGAGLGG   98 (271)
T ss_dssp             ----------CCTTTCHHHHHHHHHHHHHCCC--CCEEEEEECCSCTTSSSCH
T ss_pred             ----------CCCCchHHHHHHHHHHHHhCCC--CCeEEEEEeCCCCCCCCch
Confidence                      125899999999888764 442  5899999999999999964

>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}

Probab=99.02  E-value=7.7e-10  Score=87.57  Aligned_cols=85  Identities=12%  Similarity=-0.037  Sum_probs=56.4

Q ss_pred             EEEEccceeeccccccccCCceEEeeee-cceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccccccc
Q 032248           17 RVVVSPYRICPLGAHIDHQGGTVSAMTI-NKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASD   95 (144)
Q Consensus        17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI-~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~   95 (144)
                      ..++|||||||+|||.||+|+.+|++|| ++++.+.+++++ +.+++.+..                             
T Consensus         6 ~~~~aP~ki~L~Ge~~~~~g~~~l~~ai~~~~~~v~v~~~~-~~~~i~~~~-----------------------------   55 (292)
T 2oi2_A            6 GVGQAHSKIILIGEHAVVYGYPAISLPLLEVEVTCKVVPAE-SPWRLYEED-----------------------------   55 (292)
T ss_dssp             EEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEECS-SCCCCCCCS-----------------------------
T ss_pred             EEEEeeeEEEEEeCCeeecCCcEEEEEEcCcEEEEEEEECC-CceEEEecC-----------------------------
Confidence            4689999999999999999999999999 999999999863 333322110                             


Q ss_pred             cccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248           96 SAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        96 ~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~  143 (144)
                               ..|.+.-+...+.  +... .|+++.|.++||...||+.
T Consensus        56 ---------~~~~~~~~~~~~~--~~~~-~g~~i~i~~~iP~g~GLGS   91 (292)
T 2oi2_A           56 ---------TLSMAVYASLEYL--NITE-ACIRCEIDSAIPEKRGMGS   91 (292)
T ss_dssp             ---------HHHHHHHHHHHHH--TCSC-CCEEEEEC----CCGGGSC
T ss_pred             ---------ccchhhhhhHHHh--cccC-CceEEEEEecCCCCCCchH
Confidence                     0011111122222  4322 5899999999999999964

>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*

Probab=98.93  E-value=4.6e-09  Score=83.52  Aligned_cols=89  Identities=13%  Similarity=0.043  Sum_probs=67.6

Q ss_pred             EEEEccceeeccccccccCCceEEeeeecc-eEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccccccc
Q 032248           17 RVVVSPYRICPLGAHIDHQGGTVSAMTINK-GILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASD   95 (144)
Q Consensus        17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~-~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~   95 (144)
                      +.++||+|++.+|++.|     |+++++|. .+.+.+++++++.+++....         .++                 
T Consensus         3 i~v~aPaki~nlG~g~~-----vl~~a~d~~~~~~~~~~~~~~~~~i~~~~---------~~~-----------------   51 (296)
T 1h72_C            3 VRVKAPCTSANLGVGFD-----VFGLCLKEPYDVIEVEAIDDKEIIIEVDD---------KNI-----------------   51 (296)
T ss_dssp             EEEEEEEEEECTGGGTT-----TEEEEEEEEEEEEEEEEESSSSEEEEESC---------TTS-----------------
T ss_pred             EEEEEEeehhccccchh-----hhHHhcccccEEEEEEecCCCeEEEEEcC---------CcC-----------------
Confidence            46899999999999877     99999998 56667777665556665311         111                 


Q ss_pred             cccccCcCChhhHHHHHHHHHHHc-CCCCCCcEEEEEEccCCCCCCccC
Q 032248           96 SAKIKEECKWGNYARGALYALQSR-GNNLTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        96 ~~~~~~~~~Wa~Yv~Gv~~~l~~~-g~~~~~G~d~~I~g~~p~~~~~~~  143 (144)
                           +...|.||+..++..+.++ |..  .|+++.|.++||.+.||+.
T Consensus        52 -----~~~~~~n~v~~a~~~~~~~~g~~--~g~~i~i~~~iP~g~GLGS   93 (296)
T 1h72_C           52 -----PTDPDKNVAGIVAKKMIDDFNIG--KGVKITIKKGVKAGSGLGS   93 (296)
T ss_dssp             -----CCCTTTSHHHHHHHHHHHHTTCC--CEEEEEEECSSCTTSSSCH
T ss_pred             -----CCCCccCcHHHHHHHHHHHhCCC--CCeEEEEEcCCCCCCCccH
Confidence                 1233999999999988774 443  5999999999999999974

>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5

Probab=98.66  E-value=4.2e-08  Score=77.69  Aligned_cols=83  Identities=13%  Similarity=-0.095  Sum_probs=64.7

Q ss_pred             ccceeec----cccccc-cCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccccccc
Q 032248           21 SPYRICP----LGAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASD   95 (144)
Q Consensus        21 APGRVnL----IGEH~D-Y~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~   95 (144)
                      |||||||    +|+|.| |+...++.++|+++..+.+++.   .+++....          ++                 
T Consensus         5 aPakinl~l~v~g~r~dgyh~~~sl~~ai~l~~~v~~~~~---~~~i~~~~----------~~-----------------   54 (275)
T 1uek_A            5 APAKVNLGLSVRFRREDGYHELHTLFAPFSLADRLVVEPV---SSGLHFQG----------PY-----------------   54 (275)
T ss_dssp             EEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEEEEEEEE---SSCEEEES----------TT-----------------
T ss_pred             ecCeEEEeeeecCcCCCCCceeeEEEEEcCCCCEEEEEEC---cEEEEEcC----------CC-----------------
Confidence            9999999    799999 9999999999999999988872   23232211          11                 


Q ss_pred             cccccCcCChhhHHHHHHHHHHHc-CCCCCCcEEEEEEccCCCCCCccC
Q 032248           96 SAKIKEECKWGNYARGALYALQSR-GNNLTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        96 ~~~~~~~~~Wa~Yv~Gv~~~l~~~-g~~~~~G~d~~I~g~~p~~~~~~~  143 (144)
                           +   -.||+..++..+.++ +.  ..|+++.|.++||.+.||..
T Consensus        55 -----~---~~n~v~~a~~~~~~~~g~--~~g~~i~i~~~IP~g~GLGS   93 (275)
T 1uek_A           55 -----G---RENLAYRAASLYLEAAGQ--PGGVRILLEKRIPEGAGLGG   93 (275)
T ss_dssp             -----G---GGSHHHHHHHHHHHHTTC--CCEEEEEEECCSCSSSSSCH
T ss_pred             -----C---CccHHHHHHHHHHHHhCC--CCCEEEEEecCCCCcCcccH
Confidence                 1   358998888888764 43  35999999999999999964

>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*

Probab=98.00  E-value=4.8e-05  Score=61.60  Aligned_cols=94  Identities=12%  Similarity=-0.043  Sum_probs=70.1

Q ss_pred             EEEEccceeec----cccccc-cCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccc
Q 032248           17 RVVVSPYRICP----LGAHID-HQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVV   91 (144)
Q Consensus        17 ~v~~APGRVnL----IGEH~D-Y~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~   91 (144)
                      ..++||+.|||    .|.+.| |+.-..+.++|+.+-.+.++++++..+++.....        ..+  +          
T Consensus         6 ~~~~apAKiNL~L~v~~~r~DGyh~l~s~~~al~l~D~l~~~~~~~~~i~~~g~~~--------~~~--p----------   65 (306)
T 3pyf_A            6 VTVRVPGKVNLYLAVGDRREDGYHELTTVFHAVSLVDEVTVRNADVLSLELVGEGA--------DQL--P----------   65 (306)
T ss_dssp             EEEEEEEEEEEEEEECCCCTTSCCCEEEEEEEEEEEEEEEEEECSSCEEEEESTTG--------GGS--C----------
T ss_pred             EEEEecceEEeecccCCcCCCCCcchheeEEEcccCCEEEEEECCCCEEEEeCCCc--------cCC--C----------
Confidence            46899999999    999999 8888888899999888888876554454442110        011  1          


Q ss_pred             cccccccccCcCChhhHHHHHHHHHHHc-CCCCCCcEEEEEEccCCCCCCccC
Q 032248           92 HASDSAKIKEECKWGNYARGALYALQSR-GNNLTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        92 ~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~-g~~~~~G~d~~I~g~~p~~~~~~~  143 (144)
                                 .+..|++.-++..+.++ |.  ..|+++.|.++||...||..
T Consensus        66 -----------~~~~Nlv~~A~~~l~~~~g~--~~~~~i~i~~~iP~~~GLGs  105 (306)
T 3pyf_A           66 -----------TDERNLAWQAAELMAEHVGR--APDVSIMIDKSIPVAGGMAG  105 (306)
T ss_dssp             -----------CSTTSHHHHHHHHHHHHTTC--CCCEEEEEEECSCTTSSSCH
T ss_pred             -----------CCCccHHHHHHHHHHHHhCC--CCCeEEEEecCCCCCCCcch
Confidence                       12468888888877764 43  24999999999999999964

>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2

Probab=97.70  E-value=2.1e-05  Score=66.32  Aligned_cols=101  Identities=9%  Similarity=-0.011  Sum_probs=62.2

Q ss_pred             EEEEccceeeccccccccCCceEEeeeecceEEEEEEe-cCCCeEEEE-eCCCCCceEEecCcccccccccccccccccc
Q 032248           17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVP-SGDTEVVLR-SGQFDGEVRFSIDEIQQPRNSVKKHHVVHAS   94 (144)
Q Consensus        17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~-~~d~~v~i~-s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~   94 (144)
                      ..++||+|++||+.|.+|+.++++|..-...  +++.. +.-.+++|. +.+++ ..++.++...               
T Consensus        26 ~~~~Ap~nialik~~gkr~~~~~~P~~dslg--~aL~~~~l~~~~~v~~~~~~~-~~~i~i~G~~---------------   87 (416)
T 1fi4_A           26 ASVTAPVNIATLKYWGKRDTKLNLPTNSSIS--VTLSQDDLRTLTSAATAPEFE-RDTLWLNGEP---------------   87 (416)
T ss_dssp             EEEEECCEEEEECCCCEEETTTTEESSCEEE--EEBCTTTSCEEEEEEECTTCC-SCBCTTTCCB---------------
T ss_pred             EEEEecceEEEEecccccCCceecccccceE--EEEEcCCCcceEEEEEcCCCC-ccEEEECCcc---------------
Confidence            4689999999999999999999888763322  22220 011123333 12222 1222222110               


Q ss_pred             ccccccCcCChhhHHHHHHHHHHHcCCC-----------CCCcEEEEEEccCCCCCCcc
Q 032248           95 DSAKIKEECKWGNYARGALYALQSRGNN-----------LTQVKMFLCCHFMNHLFALS  142 (144)
Q Consensus        95 ~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~-----------~~~G~d~~I~g~~p~~~~~~  142 (144)
                           ...  -.++++.++..+++....           ...|+++.+.++||...||.
T Consensus        88 -----~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~I~i~~~IP~~aGLG  139 (416)
T 1fi4_A           88 -----HSI--DNERTQNCLRDLRQLRKEMESKDASLPTLSQWKLHIVSENNFPTAAGLA  139 (416)
T ss_dssp             -----SSS--SSSSHHHHHHHHHHHHHHHHTTCTTSCCGGGSCEEEEEEECCCTTSCCC
T ss_pred             -----ccc--cchHHHHHHHHHHHHhccccccccccccccCCcEEEEEecCCcCcCCcc
Confidence                 011  168999999888774211           03699999999999999995

>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}

Probab=93.01  E-value=0.35  Score=38.48  Aligned_cols=86  Identities=13%  Similarity=0.069  Sum_probs=56.1

Q ss_pred             EEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccccccc
Q 032248           17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS   96 (144)
Q Consensus        17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~   96 (144)
                      +.+++|++.=-+|.     |+-+|-+||+.+..+.+++.. +.++|.....+        .+  +               
T Consensus         3 ~~v~vPat~anlG~-----Gfd~lg~al~l~d~v~~~~~~-~~~~i~~~~~~--------~~--p---------------   51 (298)
T 3hul_A            3 LRIRVPATTANLGP-----GFDSCGLALTLYLTLDIGAEA-DSWYIEHNIGG--------GI--P---------------   51 (298)
T ss_dssp             EEEEEEEEEESCTT-----CTTTEEEEEEEEEEEEEEEEC-SSCEEECCCCT--------TC--C---------------
T ss_pred             EEEEEeeceeccCC-----CcchhhhhcccceEEEEEEcC-CceEEEecCcc--------cC--C---------------
Confidence            36899999998888     888899999998888887533 34555432100        11  1               


Q ss_pred             ccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248           97 AKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        97 ~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~  143 (144)
                         ..+   .|.+.-++..+.+    ...|+++.|.++||...||..
T Consensus        52 ---~~~---~nlv~~a~~~~~~----~~~g~~i~i~~~iP~~~GLGs   88 (298)
T 3hul_A           52 ---HDE---TNVIIETALNLAP----NLTPHHLVMTCDIPPARGLGS   88 (298)
T ss_dssp             ---SST---TSHHHHHHHHHCT----TCCCEEEEEEECSCTTSSSSH
T ss_pred             ---CCC---CcHHHHHHHHHhc----cCCceEEEEecCCCCCCCccH
Confidence               011   2333333334432    235999999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	144
d1kvka1	225	d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus	9e-13
d1piea1	205	d.14.1.5 (A:9-213) Galactokinase {Lactococcus lact	2e-10
d1s4ea1	176	d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococ	3e-08
d1wuua1	215	d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapi	5e-08
d1kkha1	180	d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Met	1e-07

>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Mevalonate kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.7 bits (146), Expect = 9e-13
 Identities = 18/119 (15%), Positives = 39/119 (32%)

Query: 16  VRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSI 75
           V +V +P ++   G H    G    A+ +N    L   P  + +V L       +  + +
Sbjct: 5   VLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDV 64

Query: 76  DEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHF 134
             +Q       +   V A    ++++  K     R  +            + + +C   
Sbjct: 65  ATLQLLDTGFLEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQ 123

>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]} Length = 205

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Galactokinase
species: Lactococcus lactis [TaxId: 1358]

 Score = 54.1 bits (129), Expect = 2e-10
 Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 8/144 (5%)

Query: 1   MRNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEV 60
           +  K +E+ G   EV     SP RI  +G H D+ GG V   +I  G         D +V
Sbjct: 6   LTEKFAEVFGDTKEV-EYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKV 64

Query: 61  VLRSGQFD--GEVRFSIDEIQQPRN---SVKKHHVVHASDSAKIKEECKWGNYARGALYA 115
            L S  F   G + F +DE+++      S     ++     A  + +  +    +G +  
Sbjct: 65  KLYSENFPKLGVIEFDLDEVEKKDGELWSNYVKGMIVMLKGAGYEIDKGFELLIKGEIPT 124

Query: 116 LQSRGNNLTQVKMFLCCHFMNHLF 139
                ++ +     L    ++ LF
Sbjct: 125 ASGLSSSASLE--LLVGVVLDDLF 146

>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 176

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Galactokinase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 47.9 bits (113), Expect = 3e-08
 Identities = 17/119 (14%), Positives = 31/119 (26%)

Query: 19  VVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEI 78
           V SP R+  +G H D+  G V  M I+   ++        ++       +          
Sbjct: 2   VKSPGRVNLIGEHTDYTYGYVMPMAIDLYTIITAEKYDKVQLYSEHFNEEKTFTLDNLTK 61

Query: 79  QQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNH 137
           +       K  +             K        L A  S   +     + +     N 
Sbjct: 62  EGSWIDYVKGVLWVLIQEGYKIGGLKGKITGDLPLGAGLSSSASFEVGILEVLNQLYNL 120

>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Galactokinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 5e-08
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 14/110 (12%)

Query: 2   RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVV 61
           R    E  G + E+   V +P R+  +G H D+  G V  M +    +L   P  D  V 
Sbjct: 16  RRAFREEFGAEPELA--VSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVS 73

Query: 62  LRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAKIKEECKWGNYARG 111
           L +     +    +               +  +  +      +W NY +G
Sbjct: 74  LLTTSEGADEPQRL------------QFPLPTAQRSLEPGTPRWANYVKG 111

>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 180

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Mevalonate kinase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 46.4 bits (109), Expect = 1e-07
 Identities = 10/72 (13%), Positives = 29/72 (40%)

Query: 18 VVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDE 77
          ++ +P ++   G H    G    +M I+    +    + + E++L     +  +  +++E
Sbjct: 7  IIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLNLNE 66

Query: 78 IQQPRNSVKKHH 89
          I+    +     
Sbjct: 67 IKNINPNNFGDF 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	144
d1piea1	205	Galactokinase {Lactococcus lactis [TaxId: 1358]}	100.0
d1wuua1	215	Galactokinase {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1s4ea1	176	Galactokinase {Archaeon Pyrococcus furiosus [TaxId	99.91
d1kkha1	180	Mevalonate kinase {Archaeon Methanococcus jannasch	99.87
d1kvka1	225	Mevalonate kinase {Rat (Rattus norvegicus) [TaxId:	99.84
d1k47a1	194	Phosphomevalonate kinase (PMK) {Streptococcus pneu	99.28
d1h72c1	163	Homoserine kinase {Archaeon Methanococcus jannasch	97.63
d1oj4a1	163	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k	93.07
d1ueka1	148	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k	82.79

>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Galactokinase
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=3.6e-33  Score=214.46  Aligned_cols=121  Identities=29%  Similarity=0.383  Sum_probs=106.4

Q ss_pred             hhHhhhhhCCCCceeEEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCc--eEEecCccc
Q 032248            2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGE--VRFSIDEIQ   79 (144)
Q Consensus         2 ~~~F~~~fG~~p~~~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~--~~~~l~~l~   79 (144)
                      .+.|++.||..|+. .+++||||||||||||||+||.||||||++++++++++++|+++++.|.++++.  .+++..++.
T Consensus         7 ~~~f~~~f~~~~~~-~~~~aPgRv~L~GeH~Dy~gg~vl~~AI~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~~~~~~~~   85 (205)
T d1piea1           7 TEKFAEVFGDTKEV-EYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKVKLYSENFPKLGVIEFDLDEVE   85 (205)
T ss_dssp             HHHHHHHHSCCCSC-EEEEEEEEEEEECCSCTTTTCEEEEEEEEEEEEEEEEECSSSEEEEEETTCGGGCCEEEETTCTT
T ss_pred             HHHHHHHhCCCcce-eEEEcceEEEEecCCeeECCCEeecccccceEEEEEecCCCCeeeeecCCCCccceeeccccccc
Confidence            58899999999973 578999999999999999999999999999999999999999999999998743  444544432


Q ss_pred             cccccccccccccccccccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCcc
Q 032248           80 QPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALS  142 (144)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~  142 (144)
                      .                   .+...|.+|+++++..|++.+....+|||+.|.|+||-++|||
T Consensus        86 ~-------------------~~~~~~~~~~~~~i~~l~~~~~~~~~G~~i~i~s~iP~gsGLg  129 (205)
T d1piea1          86 K-------------------KDGELWSNYVKGMIVMLKGAGYEIDKGFELLIKGEIPTASGLS  129 (205)
T ss_dssp             S-------------------CCTTCTHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCTTSSSC
T ss_pred             c-------------------ccccchhHHHHHHHHHHHHhCCccccCeEEEEecCCccccccC
Confidence            1                   3567899999999999999888777899999999999999997

>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Galactokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2e-29  Score=193.28  Aligned_cols=120  Identities=22%  Similarity=0.228  Sum_probs=98.2

Q ss_pred             hhHhhhhhCCCCceeEEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCC----ceEEecCc
Q 032248            2 RNKVSEMSGRDAEVVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDG----EVRFSIDE   77 (144)
Q Consensus         2 ~~~F~~~fG~~p~~~~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~----~~~~~l~~   77 (144)
                      +++|++.||.+|+  ++++|||||||||||+||+||.|||||||+++++++++++|++++|.+.+++.    ...+.++.
T Consensus        16 ~~~F~~~fg~~p~--~i~~APGrv~L~GEH~dy~Gg~vl~~Ai~~~~~v~~~~~~d~~i~v~s~~~~~~~~~~~~~~~~~   93 (215)
T d1wuua1          16 RRAFREEFGAEPE--LAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVSLLTTSEGADEPQRLQFPLPT   93 (215)
T ss_dssp             HHHHHHHHSSCCS--EEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEETTCEEEEEECCSSSCSCSEEEEECCC
T ss_pred             HHHHHHHhCCCCC--EEEEcceEEEEecCCeeeCCceEEeeeccCcEEEEEEecCCCEEEEEEccCCCCcceEEeecccc
Confidence            4689999999998  78999999999999999999999999999999999999999999999977642    23333332


Q ss_pred             cccccccccccccccccccccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCcc
Q 032248           78 IQQPRNSVKKHHVVHASDSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALS  142 (144)
Q Consensus        78 l~~~~~~~~~~~~~~~~~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~  142 (144)
                      ....                .......|.+|+++++..+...   ...|||++|+|+||-++|||
T Consensus        94 ~~~~----------------~~~~~~~~~~~~~~~~~~~~~~---~~~g~~i~i~S~iP~gaGLg  139 (215)
T d1wuua1          94 AQRS----------------LEPGTPRWANYVKGVIQYYPAA---PLPGFSAVVVSSVPLGGGLS  139 (215)
T ss_dssp             SSCC----------------CCCCSSGGGHHHHHHHHHCSSS---CCCEEEEEEEECSCTTSSSC
T ss_pred             cccc----------------cccccchhhhhhhhhHhhhccC---CCCCeEEEEecCcccCcccc
Confidence            2111                1235678999999988876432   23599999999999999997

>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Galactokinase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.91  E-value=1.2e-25  Score=167.22  Aligned_cols=100  Identities=27%  Similarity=0.335  Sum_probs=77.8

Q ss_pred             EEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccccccccc
Q 032248           19 VVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDSAK   98 (144)
Q Consensus        19 ~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~   98 (144)
                      ++|||||||+|||+||+||.||||||++++++.++++++  +++.+.++....++.+.++.                   
T Consensus         2 v~aPgRi~l~GeH~Dy~gg~vl~~AI~~~~~v~~~~~~~--~~i~~~~~~~~~~~~~~~~~-------------------   60 (176)
T d1s4ea1           2 VKSPGRVNLIGEHTDYTYGYVMPMAIDLYTIITAEKYDK--VQLYSEHFNEEKTFTLDNLT-------------------   60 (176)
T ss_dssp             EEEEEEEESSCCSCGGGTCEECEEEEEEEEEEC----CC--BCCCBTTTTC-C---CC-CC-------------------
T ss_pred             cccCEEEEEEccCeeeCCCEEEeEEeeeEEEEEEEcccc--eEEEeccCCcceeeeecccc-------------------
Confidence            699999999999999999999999999999998887754  55666666655666666431                   


Q ss_pred             ccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCcc
Q 032248           99 IKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALS  142 (144)
Q Consensus        99 ~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~  142 (144)
                        ...+|.+|+.+++..+.+.+... .||++.|+|+||-++|||
T Consensus        61 --~~~~~~~~~~~~~~~~~~~~~~~-~g~~i~i~s~iP~gsGLg  101 (176)
T d1s4ea1          61 --KEGSWIDYVKGVLWVLIQEGYKI-GGLKGKITGDLPLGAGLS  101 (176)
T ss_dssp             --CCSSTHHHHHHHHHHHHHTTCCC-CCBC-CEEESSCTTSSSC
T ss_pred             --ccccchhheehhhhhhhhhcccC-CCeEEEEecCcccCcccc
Confidence              45789999999999999887766 599999999999999997

>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Mevalonate kinase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.87  E-value=1.1e-21  Score=145.48  Aligned_cols=109  Identities=12%  Similarity=0.109  Sum_probs=89.4

Q ss_pred             EEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccccccc
Q 032248           17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS   96 (144)
Q Consensus        17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~   96 (144)
                      .+++|||||+|+|||+||+||.|+++|||+++++.+++++++++++.+.+++....+++++....               
T Consensus         6 ~~~~aPgkv~L~GEh~~~~G~~~l~~aI~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------------   70 (180)
T d1kkha1           6 MIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLNLNEIKNI---------------   70 (180)
T ss_dssp             EEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECCSSEEEEEETTTTEEEEEETTTGGGC---------------
T ss_pred             EEEEcCEEEEEEccCeEEcCCEEEEEEEeCEEEEEEEECCCCCcceeeecccceeeecchhcccc---------------
Confidence            68999999999999999999999999999999999999999999999998887777777764321               


Q ss_pred             ccccCcCChhhHHHHHHHHHHH-cCCCCCCcEEEEEEccCCCCCCcc
Q 032248           97 AKIKEECKWGNYARGALYALQS-RGNNLTQVKMFLCCHFMNHLFALS  142 (144)
Q Consensus        97 ~~~~~~~~Wa~Yv~Gv~~~l~~-~g~~~~~G~d~~I~g~~p~~~~~~  142 (144)
                        ......|..|+..++....+ .+.....||++.|++++|...||+
T Consensus        71 --~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~i~i~s~iP~g~GLG  115 (180)
T d1kkha1          71 --NPNNFGDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLG  115 (180)
T ss_dssp             --CGGGSGGGHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCSSSSSC
T ss_pred             --CccchhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchhhcCcc
Confidence              11334567777776655444 455555799999999999999986

>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Mevalonate kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=3.7e-21  Score=146.44  Aligned_cols=125  Identities=14%  Similarity=0.060  Sum_probs=82.5

Q ss_pred             EEEEccceeeccccccccCCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCccccccccccccccccc---
Q 032248           17 RVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHA---   93 (144)
Q Consensus        17 ~v~~APGRVnLIGEH~DY~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~---   93 (144)
                      ++++|||||+|+|||+||+||+||+||||+++++.++|+++++++|.+.+++.+.++++.+..........+++...   
T Consensus         6 ~~vsAPGKv~L~GEh~v~~G~~al~~ai~~~~~v~v~~~~~~~v~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (225)
T d1kvka1           6 LLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDVATLQLLDTGFLEQGDVPAPTL   85 (225)
T ss_dssp             EEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECSSSEEEEEETTTTEEEEEEHHHHHTSCC-------------
T ss_pred             EEEEeceEEEEEeCceeecCCCEEEEEecccEEEEEEECCCCeEEEEECCCCcceEEecccccccccccccccccCcchh
Confidence            68999999999999999999999999999999999999999999999999886666655432110000000000000   


Q ss_pred             ---------ccccc--ccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCcc
Q 032248           94 ---------SDSAK--IKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALS  142 (144)
Q Consensus        94 ---------~~~~~--~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~  142 (144)
                               .....  ......|.+.+...+..+.+... ...|+++.|.|++|.+.||+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~i~i~s~lP~g~GLG  144 (225)
T d1kvka1          86 EQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQR-TLPSLDIMVWSELPPGAGLG  144 (225)
T ss_dssp             ---CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTSS-SCCCEEEEEEESSCTTSSSC
T ss_pred             hhhhhHhhhhccccccchhhhhHHHHHHHHHHHHhcccc-CCCCeEEEEeCCCCCCcccc
Confidence                     00000  01111233333444444444333 34699999999999999997

>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Phosphomevalonate kinase (PMK)
species: Streptococcus pneumoniae r6 [TaxId: 171101]

Probab=99.28  E-value=5.6e-12  Score=92.97  Aligned_cols=96  Identities=13%  Similarity=-0.092  Sum_probs=67.9

Q ss_pred             EEEccceeecccccccc-CCceEEeeeecceEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccccccc
Q 032248           18 VVVSPYRICPLGAHIDH-QGGTVSAMTINKGILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHASDS   96 (144)
Q Consensus        18 v~~APGRVnLIGEH~DY-~gG~VLp~AI~~~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~   96 (144)
                      .++|||+|.|+|||.-- .|+.+|.+|||+++++.++++++.+++..+.....  ....+                    
T Consensus         3 ~v~apGK~iL~GE~aVv~~G~~ala~ai~~~~~v~v~~~~~~~i~~~~~~~~~--~~~~~--------------------   60 (194)
T d1k47a1           3 AVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDSYRIYSDMFDFAV--DLRPN--------------------   60 (194)
T ss_dssp             EEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSCEEEEEC-----------C--------------------
T ss_pred             EEEeCcEEEEEeeeEEecCCCeEEEEEEeceEEEEEEECCCceEEeecccccc--ccccC--------------------
Confidence            57999999999999765 69999999999999999999998887666543321  11111                    


Q ss_pred             ccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCC
Q 032248           97 AKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLF  139 (144)
Q Consensus        97 ~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~  139 (144)
                         .+..-+.+.++.+...+...+... .|+++.|.+++|...
T Consensus        61 ---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~ip~~~   99 (194)
T d1k47a1          61 ---PDYSLIQETIALMGDFLAVRGQNL-RPFSLAIYGKMEREG   99 (194)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHTTCCC-CCEEEEEESHHHHST
T ss_pred             ---cchhHHHHHHHHHHHHHHHcCCCC-CCeEEEEEccCcccc
Confidence               012223444455555666666665 599999999999987

>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Homoserine kinase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.63  E-value=0.00016  Score=51.76  Aligned_cols=89  Identities=15%  Similarity=0.006  Sum_probs=64.8

Q ss_pred             EEEEcccee-eccccccccCCceEEeeeecc-eEEEEEEecCCCeEEEEeCCCCCceEEecCcccccccccccccccccc
Q 032248           17 RVVVSPYRI-CPLGAHIDHQGGTVSAMTINK-GILLGFVPSGDTEVVLRSGQFDGEVRFSIDEIQQPRNSVKKHHVVHAS   94 (144)
Q Consensus        17 ~v~~APGRV-nLIGEH~DY~gG~VLp~AI~~-~~~va~~~~~d~~v~i~s~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~   94 (144)
                      +.+++|+.. || |     .|+-+|.+||+. +..+.+.++++..+++.....+         +  +             
T Consensus         3 i~v~~Pas~aNl-g-----~GFD~lg~Al~~~~d~v~v~~~~~~~i~i~~~~~~---------i--~-------------   52 (163)
T d1h72c1           3 VRVKAPCTSANL-G-----VGFDVFGLCLKEPYDVIEVEAIDDKEIIIEVDDKN---------I--P-------------   52 (163)
T ss_dssp             EEEEEEEEEECT-G-----GGTTTEEEEEEEEEEEEEEEEESSSSEEEEESCTT---------S--C-------------
T ss_pred             EEEEEeccHHhc-c-----ccHhHhhhhhcCCccEEEEEECCCCeEEEEecCcc---------c--C-------------
Confidence            468999999 76 4     677799999985 7788888888777766542211         1  1             


Q ss_pred             ccccccCcCChhhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccC
Q 032248           95 DSAKIKEECKWGNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSY  143 (144)
Q Consensus        95 ~~~~~~~~~~Wa~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~  143 (144)
                             .....|++.-++..+.+.... ..|+++.|.++||.+.||..
T Consensus        53 -------~~~~~n~~~~~~~~~~~~~~~-~~~~~i~i~~~IP~gaGLGs   93 (163)
T d1h72c1          53 -------TDPDKNVAGIVAKKMIDDFNI-GKGVKITIKKGVKAGSGLGS   93 (163)
T ss_dssp             -------CCTTTSHHHHHHHHHHHHTTC-CCEEEEEEECSSCTTSSSCH
T ss_pred             -------CchhhhhHHHHHHHHHHhcCC-CCCEEEEEeeccccccccCc
Confidence                   112346777788777775433 36999999999999999964

>d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
species: Escherichia coli [TaxId: 562]

Probab=93.07  E-value=0.31  Score=34.11  Aligned_cols=21  Identities=10%  Similarity=-0.255  Sum_probs=18.9

Q ss_pred             CCcEEEEEEccCCCCCCccCC
Q 032248          124 TQVKMFLCCHFMNHLFALSYG  144 (144)
Q Consensus       124 ~~G~d~~I~g~~p~~~~~~~~  144 (144)
                      ..++++.|.-+||.++||.+|
T Consensus        87 ~~~~~I~i~KnIP~gaGLGGG  107 (163)
T d1oj4a1          87 GSGANISIDKRLPMGGGLGGG  107 (163)
T ss_dssp             TCEEEEEEECCSCSSTTSCHH
T ss_pred             CCceEEEEEeeeeecccccCC
Confidence            469999999999999999875

>d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
species: Thermus thermophilus [TaxId: 274]

Probab=82.79  E-value=5  Score=27.20  Aligned_cols=38  Identities=16%  Similarity=-0.055  Sum_probs=28.1

Q ss_pred             hhHHHHHHHHHHHcCCCCCCcEEEEEEccCCCCCCccCC
Q 032248          106 GNYARGALYALQSRGNNLTQVKMFLCCHFMNHLFALSYG  144 (144)
Q Consensus       106 a~Yv~Gv~~~l~~~g~~~~~G~d~~I~g~~p~~~~~~~~  144 (144)
                      .|-+.=++..|.++... ..++++.|.=+||.++||-+|
T Consensus        57 ~Nlv~ka~~~l~~~~~~-~~~~~I~i~K~IP~~aGLGGG   94 (148)
T d1ueka1          57 ENLAYRAASLYLEAAGQ-PGGVRILLEKRIPEGAGLGGG   94 (148)
T ss_dssp             GSHHHHHHHHHHHHTTC-CCEEEEEEECCSCSSSSSCHH
T ss_pred             cchhhhhhhhhHHhcCC-CceEEEEEEeeEEEeeeccCC
Confidence            36665566666654333 358999999999999999765