Citrus Sinensis ID: 032312

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MWAASCLASCCAACACDACRSAVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKLPWINHFHKTPSREWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPNEIVSFYGK
Secondary Structure (PSIPRED)
cccHHcHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcccHHHHHHHHHHHHHHHHcccccccEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHHHHHHHHHHHHccccEEEEEcc
Coil and Loop (DISEMBL)
MWAASCLASCCAACACDACRSAVSGISRRSARIAYCGLFALSLIVSWILREVAAPlmeklpwinhfhktpsrewfeTDAVLRVSLGNFLFFTILSILMVGVknqkdprdslhhggwMMKIICWCLLVIFMFFLPNEIVSFYGK
Flexible Loop (DISEMBL)
MWAASCLASCCAACACDACRSAVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKLPWINHFHKTPSREWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPNEIVSFYGK
Low Complexity Region (SEG)
MWaasclasccaacacdacrsaVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKLPWINHFHKTPSREWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPNEIVSFYGK
Disordered region (IsUnstruct)
*WAASCLASCCAACACDACRSAVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKLPWINHFHKTPSREWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPNEIVSFY**
Disordered Region (DISOPRED)
*WAASCLASCCAACACDACRSAVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKLPWINHFHKTPSREWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPNEIVSFYGK
Disordered Region (DISEMBL)
MWAASCLASCCAACACDACRSAVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKLPWINHFHKTPSREWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPNEIVSFYGK
Disordered Region (DISPRO)
MWAASCLASCCAACACDACRSAVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKLPWINHFHKTPSREWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPNEIVSFYGK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWAASCLASCCAACACDACRSAVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKLPWINHFHKTPSREWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPNEIVSFYGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
A9UY97	483	Probable serine incorpora	N/A	no	0.909	0.269	0.337	1e-11
Q5R533	473	Serine incorporator 3 OS=	yes	no	0.874	0.264	0.272	9e-08
Q7TNK0	453	Serine incorporator 1 OS=	yes	no	0.902	0.284	0.289	2e-07
Q9QZI8	453	Serine incorporator 1 OS=	yes	no	0.902	0.284	0.289	2e-07
A7S4N4	456	Probable serine incorpora	N/A	no	0.909	0.285	0.304	3e-07
Q13530	473	Serine incorporator 3 OS=	yes	no	0.874	0.264	0.264	2e-06
Q86VE9	423	Serine incorporator 5 OS=	no	no	0.930	0.314	0.269	1e-05
Q54UF8	417	Probable serine incorpora	yes	no	0.741	0.254	0.299	3e-05
Q3MHV9	453	Serine incorporator 1 OS=	no	no	0.769	0.242	0.294	4e-05
Q8BHJ6	461	Serine incorporator 5 OS=	no	no	0.930	0.288	0.246	5e-05

>sp|A9UY97|SERIC_MONBE Probable serine incorporator OS=Monosiga brevicollis GN=serinc PE=3 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 75/154 (48%), Gaps = 24/154 (15%)

Query: 2   WAASCLASCCAACACDAC-RSAVSGISRRSARIAYCGLFALSLIVSWIL--REVAAPLME 58
           +AA  +A CC + AC  C RS  S  +  S RI Y  LF LS I +WI+  ++V+  LM+
Sbjct: 14  YAAESVACCCGSAACSLCCRSCPSCTNSTSTRITYAILFFLSSIAAWIMLDKDVSKGLMK 73

Query: 59  KLPWINHFHKTPSR----------------EWFETDAVLRVSLGNFLFFTILSILMVGVK 102
               +  +H T  R                 W E   V+R+     LF   LS+  +GV 
Sbjct: 74  ----VCCYHSTLFRLVLFTQPAIKTTTNVVPWGEL-GVMRIMFSVCLFHLFLSLCTIGVS 128

Query: 103 NQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPNE 136
           + KDPR SLH+G W +K+I     ++  FF+ N 
Sbjct: 129 SSKDPRSSLHNGMWFIKLILLVGAMVGSFFISNS 162

Enhances the incorporation of serine into phosphatidylserine and sphingolipids.
Monosiga brevicollis (taxid: 81824)

>sp|Q5R533|SERC3_PONAB Serine incorporator 3 OS=Pongo abelii GN=SERINC3 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 11/136 (8%)

Query: 11  CAACACDACRSAVSGISRRSARIAYCGLFALSLIVSWIL-REVAAPLMEKLPWI----NH 65
           C+  +C  C    +  +    R+ Y  +  LS +VS+I+ R+     ++K+P        
Sbjct: 18  CSGASCLLCSCCPNSKNSTVTRLIYAFILLLSTVVSYIMQRKEMETYLKKIPGFCEGGFK 77

Query: 66  FHKTPSREWFETD------AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMK 119
            H+       + D      AV R+S    +FF + S+LM  VK  KDPR ++H+G W  K
Sbjct: 78  IHEADINADKDCDVLVGYKAVYRISFAMAIFFFVFSLLMFKVKTSKDPRAAVHNGFWFFK 137

Query: 120 IICWCLLVIFMFFLPN 135
           I     +++  F++P 
Sbjct: 138 IAALIGIMVGSFYIPG 153

May be involved in cellular transformation.

Pongo abelii (taxid: 9601)

>sp|Q7TNK0|SERC1_RAT Serine incorporator 1 OS=Rattus norvegicus GN=Serinc1 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 9/138 (6%)

Query: 4   ASCLASCCAACACDACRSAVSGISRRSARIAYCGLFALSLIVSWILREVAAPLME----K 59
           AS +   C +  C  CR   SG +    R+ Y     + + V+ ++     P ME    K
Sbjct: 11  ASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVM---LIPGMEEQLNK 67

Query: 60  LPWI--NHFHKTPSREWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWM 117
           +P    N     P        AV R+  G  +F+ +LS+LM+ VK+  DPR ++H+G W 
Sbjct: 68  IPGFCENEKGVVPCNILVGYKAVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAVHNGFWF 127

Query: 118 MKIICWCLLVIFMFFLPN 135
            K      ++I  FF+P 
Sbjct: 128 FKFATAVAIIIGAFFIPE 145

Enhances the incorporation of serine into phosphatidylserine and sphingolipids.

Rattus norvegicus (taxid: 10116)

>sp|Q9QZI8|SERC1_MOUSE Serine incorporator 1 OS=Mus musculus GN=Serinc1 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 9/138 (6%)

Query: 4   ASCLASCCAACACDACRSAVSGISRRSARIAYCGLFALSLIVSWILREVAAPLME----K 59
           AS +   C +  C  CR   SG +    R+ Y     + + V+ ++     P ME    K
Sbjct: 11  ASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVM---LIPGMEEQLNK 67

Query: 60  LPWI--NHFHKTPSREWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWM 117
           +P    N     P        AV R+  G  +F+ +LS+LM+ VK+  DPR ++H+G W 
Sbjct: 68  IPGFCENEKGVVPCNILVGYKAVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAVHNGFWF 127

Query: 118 MKIICWCLLVIFMFFLPN 135
            K      ++I  FF+P 
Sbjct: 128 FKFATAVAIIIGAFFIPE 145

Enhances the incorporation of serine into phosphatidylserine and sphingolipids.

Mus musculus (taxid: 10090)

>sp|A7S4N4|SERIC_NEMVE Probable serine incorporator OS=Nematostella vectensis GN=serinc PE=3 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 11/141 (7%)

Query: 3   AASC---LASCCAACACD-ACRSAVSGISRRSARIAYCGLFALSLIVSWILREVAAP--- 55
           AASC   LA CC + AC   C    +  +  S RI Y       L+VS I   V AP   
Sbjct: 10  AASCAANLACCCGSAACSLCCNFCPTCKNSTSTRIVYSIFLLFGLVVSCI---VLAPGIR 66

Query: 56  -LMEKLPWINHFHKTPSREWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHG 114
             + ++P++               AV RV  G   FF +  +LM GV + +D R  + +G
Sbjct: 67  HKLNQIPYLCEHASETCDSIVGYLAVYRVCFGLAAFFLLFCLLMYGVTSSRDVRSKIQNG 126

Query: 115 GWMMKIICWCLLVIFMFFLPN 135
            W +KI+ +   ++  FF+P 
Sbjct: 127 FWGIKILLFLGAIVAAFFIPQ 147

Enhances the incorporation of serine into phosphatidylserine and sphingolipids.

Nematostella vectensis (taxid: 45351)

>sp|Q13530|SERC3_HUMAN Serine incorporator 3 OS=Homo sapiens GN=SERINC3 PE=2 SV=2

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 11/136 (8%)

Query: 11  CAACACDACRSAVSGISRRSARIAYCGLFALSLIVSWIL-REVAAPLMEKLPWI----NH 65
           C+  +C  C    +  +    R+ Y  +  LS +VS+I+ R+     ++K+P        
Sbjct: 18  CSGASCLLCSCCPNSKNSTVTRLIYAFILLLSTVVSYIMQRKEMETYLKKIPGFCEGGFK 77

Query: 66  FHKTPSREWFETD------AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMK 119
            H+       + D      AV R+S    +FF + S+LM  VK  KD R ++H+G W  K
Sbjct: 78  IHEADINADKDCDVLVGYKAVYRISFAMAIFFFVFSLLMFKVKTSKDLRAAVHNGFWFFK 137

Query: 120 IICWCLLVIFMFFLPN 135
           I     +++  F++P 
Sbjct: 138 IAALIGIMVGSFYIPG 153

May be involved in cellular transformation.

Homo sapiens (taxid: 9606)

>sp|Q86VE9|SERC5_HUMAN Serine incorporator 5 OS=Homo sapiens GN=SERINC5 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 8/141 (5%)

Query: 4   ASCLASCCAACACDACRSAVSGISRR-SARIAYCGLFALSLIVSWIL--REVAAPLMEKL 60
           A  LA CC +  C  C      I +  S R  Y   F L +++  I+    VA  + E +
Sbjct: 7   AGQLACCCGSAGCSLCCDCCPRIRQSLSTRFMYALYFILVVVLCCIMMSTTVAHKMKEHI 66

Query: 61  PWINHFHK-----TPSREWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGG 115
           P+     K         +     AV RV  G   FF I  +L + + N K  R  +H+G 
Sbjct: 67  PFFEDMCKGIKAGDTCEKLVGYSAVYRVCFGMACFFFIFCLLTLKINNSKSCRAHIHNGF 126

Query: 116 WMMKIICWCLLVIFMFFLPNE 136
           W  K++    +    FF+P++
Sbjct: 127 WFFKLLLLGAMCSGAFFIPDQ 147

Enhances the incorporation of serine into phosphatidylserine and sphingolipids. May play a role in providing serine molecules for the formation of myelin glycosphingolipids in oligodendrocytes.

Homo sapiens (taxid: 9606)

>sp|Q54UF8|SERIC_DICDI Probable serine incorporator OS=Dictyostelium discoideum GN=serinc PE=3 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 11/117 (9%)

Query: 30  SARIAYCGLFALSLIVSWILREVAAPLMEKLPWINHFH--KTPSREWFETDAVL---RVS 84
           S R+ Y   F L  IV++IL            W N+    K  S+   E    L   R++
Sbjct: 21  STRLVYVVFFLLVSIVAYILS------YWTFSWFNNLDVLKICSKGDNECKGALVVYRLT 74

Query: 85  LGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPNEIVSFY 141
            G  L+  +L ++M+ VK+  D R  L  G W +KI+   +L+   FF+PN     Y
Sbjct: 75  FGLALYHILLGLVMINVKSAGDSRAKLQDGYWPLKILLLGVLIFVSFFIPNSFFRVY 131

Enhances the incorporation of serine into phosphatidylserine and sphingolipids.

Dictyostelium discoideum (taxid: 44689)

>sp|Q3MHV9|SERC1_BOVIN Serine incorporator 1 OS=Bos taurus GN=SERINC1 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 9/119 (7%)

Query: 4   ASCLASCCAACACDACRSAVSGISRRSARIAYCGLFALSLIVSWILREVAAPLME----K 59
           AS +   C +  C  CR   SG +    R+ Y     + + V+ ++     P ME    K
Sbjct: 11  ASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVM---LIPGMEEQLNK 67

Query: 60  LPWI--NHFHKTPSREWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGW 116
           +P    N     P        AV R+  G  +F+ +LS+LM+ VK+  DPR ++H+G W
Sbjct: 68  IPGFCENEKGMVPCNILVGYKAVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAIHNGFW 126

Enhances the incorporation of serine into phosphatidylserine and sphingolipids.

Bos taurus (taxid: 9913)

>sp|Q8BHJ6|SERC5_MOUSE Serine incorporator 5 OS=Mus musculus GN=Serinc5 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 9/142 (6%)

Query: 4   ASCLASCCAACACDACRSAVSGISR-RSARIAYCGLFALSLIVSWILR--EVAAPLMEKL 60
           A  LA CC +  C  C        + R+ R  Y   F L + +  ++    V   + + +
Sbjct: 7   AGQLACCCGSAGCSLCCGCCPKFRQSRTTRFMYLFYFILVIALCCVMMTPSVMKQVKDHI 66

Query: 61  PWINHFHKTPS------REWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHG 114
           P+   F K                AV RV  G   FF +  +L + V N K  R  +H+G
Sbjct: 67  PFFEEFCKKTQAGGDACENLVGYSAVYRVCFGMACFFALFCLLTLKVNNSKSCRAYIHNG 126

Query: 115 GWMMKIICWCLLVIFMFFLPNE 136
            W  K++    +    FF+P++
Sbjct: 127 FWFFKLLLLGAMCSGAFFIPDQ 148

Enhances the incorporation of serine into phosphatidylserine and sphingolipids. May play a role in providing serine molecules for the formation of myelin glycosphingolipids in oligodendrocytes.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
255543411	413	Membrane protein PB1A10.07c, putative [R	0.986	0.341	0.943	2e-62
15219147	412	serinc-domain containing protein [Arabid	0.853	0.296	0.909	3e-62
224075942	415	predicted protein [Populus trichocarpa]	0.986	0.339	0.893	7e-62
224053072	414	predicted protein [Populus trichocarpa]	0.986	0.340	0.914	8e-62
225443227	413	PREDICTED: probable serine incorporator	0.986	0.341	0.914	9e-62
297844542	412	TMS membrane family protein [Arabidopsis	0.853	0.296	0.901	1e-61
356527384	410	PREDICTED: probable serine incorporator-	0.986	0.343	0.893	3e-60
356567856	410	PREDICTED: probable serine incorporator-	0.986	0.343	0.893	3e-59
449436205	422	PREDICTED: probable serine incorporator-	0.986	0.334	0.836	3e-56
449491094	411	PREDICTED: probable serine incorporator-	0.986	0.343	0.836	3e-56

>gi|255543411|ref|XP_002512768.1| Membrane protein PB1A10.07c, putative [Ricinus communis] gi|223547779|gb|EEF49271.1| Membrane protein PB1A10.07c, putative [Ricinus communis]

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 133/141 (94%), Positives = 137/141 (97%)

Query: 1   MWAASCLASCCAACACDACRSAVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKL 60
           MWAASCLASCCAACACDACR+ VSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKL
Sbjct: 1   MWAASCLASCCAACACDACRTVVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKL 60

Query: 61  PWINHFHKTPSREWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKI 120
           PWINHFHKTP REWFETDAVLRVSLGNFLFFTIL+ LMVGVK+QKDPRD LHHGGWMMKI
Sbjct: 61  PWINHFHKTPDREWFETDAVLRVSLGNFLFFTILATLMVGVKSQKDPRDGLHHGGWMMKI 120

Query: 121 ICWCLLVIFMFFLPNEIVSFY 141
           ICWC+LVIFMFFLPNEIVSFY
Sbjct: 121 ICWCVLVIFMFFLPNEIVSFY 141

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219147|ref|NP_173069.1| serinc-domain containing protein [Arabidopsis thaliana] gi|334182610|ref|NP_001185008.1| serinc-domain containing protein [Arabidopsis thaliana] gi|6587821|gb|AAF18512.1|AC010924_25 Contains similarity to gb|AF181686 membrane protein TMS1d from Drosophila melanogaster. ESTs gb|R64994, gb|AI994832, gb|Z47674 come from this gene [Arabidopsis thaliana] gi|332191295|gb|AEE29416.1| serinc-domain containing protein [Arabidopsis thaliana] gi|332191296|gb|AEE29417.1| serinc-domain containing protein [Arabidopsis thaliana]

 Score =  243 bits (619), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 111/122 (90%), Positives = 119/122 (97%)

Query: 20  RSAVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKLPWINHFHKTPSREWFETDA 79
           R+ VSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKLPWINHFHKTP REWFETDA
Sbjct: 20  RTVVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKLPWINHFHKTPDREWFETDA 79

Query: 80  VLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPNEIVS 139
           VLRVSLGNFLFF+ILS++M+GVKNQKDPRD +HHGGWMMKIICWC+LVIFMFFLPNEI+S
Sbjct: 80  VLRVSLGNFLFFSILSVMMIGVKNQKDPRDGIHHGGWMMKIICWCILVIFMFFLPNEIIS 139

Query: 140 FY 141
           FY
Sbjct: 140 FY 141

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075942|ref|XP_002304839.1| predicted protein [Populus trichocarpa] gi|222842271|gb|EEE79818.1| predicted protein [Populus trichocarpa]

 Score =  241 bits (615), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 126/141 (89%), Positives = 133/141 (94%)

Query: 1   MWAASCLASCCAACACDACRSAVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKL 60
           MWAASCLASCCA CAC AC + VSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKL
Sbjct: 1   MWAASCLASCCATCACHACTTVVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKL 60

Query: 61  PWINHFHKTPSREWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKI 120
           PWINHFHKTP REWFETDAVLRVSLGNF+FFTIL+ +MVGVKNQKDPRDSLHHGGWM K+
Sbjct: 61  PWINHFHKTPDREWFETDAVLRVSLGNFMFFTILATMMVGVKNQKDPRDSLHHGGWMAKV 120

Query: 121 ICWCLLVIFMFFLPNEIVSFY 141
           +CWC+LVI MFFLPNEIVSFY
Sbjct: 121 VCWCILVILMFFLPNEIVSFY 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053072|ref|XP_002297693.1| predicted protein [Populus trichocarpa] gi|118488403|gb|ABK96018.1| unknown [Populus trichocarpa] gi|222844951|gb|EEE82498.1| predicted protein [Populus trichocarpa]

 Score =  241 bits (614), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 129/141 (91%), Positives = 136/141 (96%)

Query: 1   MWAASCLASCCAACACDACRSAVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKL 60
           MWAASCLASCCAACAC AC + VSGISRRSARIAYCGLFALSLIVSWILREVAAPLME++
Sbjct: 1   MWAASCLASCCAACACSACTTVVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEQI 60

Query: 61  PWINHFHKTPSREWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKI 120
           PWINHFHKTP REWFETDAVLRVSLGNFLFFTIL+I+MVGVKNQKDPRDSLHHGGWM K+
Sbjct: 61  PWINHFHKTPDREWFETDAVLRVSLGNFLFFTILAIMMVGVKNQKDPRDSLHHGGWMAKV 120

Query: 121 ICWCLLVIFMFFLPNEIVSFY 141
           +CWCLLVIFMFFLPNEIVSFY
Sbjct: 121 VCWCLLVIFMFFLPNEIVSFY 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443227|ref|XP_002270610.1| PREDICTED: probable serine incorporator [Vitis vinifera] gi|298204750|emb|CBI25248.3| unnamed protein product [Vitis vinifera]

 Score =  241 bits (614), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 129/141 (91%), Positives = 137/141 (97%)

Query: 1   MWAASCLASCCAACACDACRSAVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKL 60
           MWAASCLASCCAACACDACR+ VSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKL
Sbjct: 1   MWAASCLASCCAACACDACRTVVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKL 60

Query: 61  PWINHFHKTPSREWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKI 120
           PWINHFHKTP+REWFETDAVLRVS GNFLFFTIL+ILM+GVKNQKDPRD +HHGGWMMKI
Sbjct: 61  PWINHFHKTPNREWFETDAVLRVSFGNFLFFTILAILMIGVKNQKDPRDGMHHGGWMMKI 120

Query: 121 ICWCLLVIFMFFLPNEIVSFY 141
           ICWC+LVIF FFLPNE++SFY
Sbjct: 121 ICWCILVIFTFFLPNELISFY 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844542|ref|XP_002890152.1| TMS membrane family protein [Arabidopsis lyrata subsp. lyrata] gi|297335994|gb|EFH66411.1| TMS membrane family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 110/122 (90%), Positives = 118/122 (96%)

Query: 20  RSAVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKLPWINHFHKTPSREWFETDA 79
           R+ VSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKLPWINHFHKTP REWFETDA
Sbjct: 20  RTVVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKLPWINHFHKTPDREWFETDA 79

Query: 80  VLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPNEIVS 139
           VLRVSLGNFLFF+ILS++M+GVKNQKDPRD +HHGGWMMKIICWC+LVI MFFLPNEI+S
Sbjct: 80  VLRVSLGNFLFFSILSVMMIGVKNQKDPRDGIHHGGWMMKIICWCILVILMFFLPNEIIS 139

Query: 140 FY 141
           FY
Sbjct: 140 FY 141

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527384|ref|XP_003532291.1| PREDICTED: probable serine incorporator-like [Glycine max]

 Score =  236 bits (601), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 126/141 (89%), Positives = 135/141 (95%)

Query: 1   MWAASCLASCCAACACDACRSAVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKL 60
           MWAASCLASCCAACACDACR+ VSGISRRSARIAYCGLFA SL+V+WILREVAAPLME L
Sbjct: 1   MWAASCLASCCAACACDACRTVVSGISRRSARIAYCGLFAFSLVVAWILREVAAPLMESL 60

Query: 61  PWINHFHKTPSREWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKI 120
           PWINHF  TPSREWFETDAVLRVSLGNFLFFTIL++LMVGVK Q+DPRDS+HHGGWMMKI
Sbjct: 61  PWINHFKHTPSREWFETDAVLRVSLGNFLFFTILAVLMVGVKTQRDPRDSMHHGGWMMKI 120

Query: 121 ICWCLLVIFMFFLPNEIVSFY 141
           ICWCLLVIFMFF+PNEI+SFY
Sbjct: 121 ICWCLLVIFMFFVPNEIISFY 141

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567856|ref|XP_003552131.1| PREDICTED: probable serine incorporator-like [Glycine max]

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 126/141 (89%), Positives = 134/141 (95%)

Query: 1   MWAASCLASCCAACACDACRSAVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKL 60
           MWAASCLASCCAACACDACR+ VSGISRRSARIAYCGLFA SL+V+WILREVAAPLME L
Sbjct: 1   MWAASCLASCCAACACDACRTVVSGISRRSARIAYCGLFAFSLVVAWILREVAAPLMESL 60

Query: 61  PWINHFHKTPSREWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKI 120
           PWINHF  TPSREWFETDAVLRVSLGNFLFFTIL+ILMVGVK Q+DPRDS+HHGGWMMKI
Sbjct: 61  PWINHFKHTPSREWFETDAVLRVSLGNFLFFTILAILMVGVKTQRDPRDSMHHGGWMMKI 120

Query: 121 ICWCLLVIFMFFLPNEIVSFY 141
           ICWCLLVI MFF+PNEI+SFY
Sbjct: 121 ICWCLLVISMFFIPNEIISFY 141

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436205|ref|XP_004135884.1| PREDICTED: probable serine incorporator-like [Cucumis sativus]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 118/141 (83%), Positives = 136/141 (96%)

Query: 1   MWAASCLASCCAACACDACRSAVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKL 60
           MWAASCLASCCAACACDACR+ VS ISRRSARIAYCGLFALSLIVSWILREVAAPL+EK+
Sbjct: 1   MWAASCLASCCAACACDACRTVVSSISRRSARIAYCGLFALSLIVSWILREVAAPLLEKI 60

Query: 61  PWINHFHKTPSREWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKI 120
           PWIN FH+TPSR+WF+TDAVLRVSLGNFLFFTILS++MVGVK+Q+DPRD++HHGGWM+K+
Sbjct: 61  PWINTFHETPSRDWFQTDAVLRVSLGNFLFFTILSVMMVGVKSQRDPRDNIHHGGWMVKV 120

Query: 121 ICWCLLVIFMFFLPNEIVSFY 141
           ICW LLV+ MFF+PNEI++FY
Sbjct: 121 ICWFLLVVLMFFVPNEIITFY 141

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491094|ref|XP_004158797.1| PREDICTED: probable serine incorporator-like [Cucumis sativus]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 118/141 (83%), Positives = 136/141 (96%)

Query: 1   MWAASCLASCCAACACDACRSAVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKL 60
           MWAASCLASCCAACACDACR+ VS ISRRSARIAYCGLFALSLIVSWILREVAAPL+EK+
Sbjct: 1   MWAASCLASCCAACACDACRTVVSSISRRSARIAYCGLFALSLIVSWILREVAAPLLEKI 60

Query: 61  PWINHFHKTPSREWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKI 120
           PWIN FH+TPSR+WF+TDAVLRVSLGNFLFFTILS++MVGVK+Q+DPRD++HHGGWM+K+
Sbjct: 61  PWINTFHETPSRDWFQTDAVLRVSLGNFLFFTILSVMMVGVKSQRDPRDNIHHGGWMVKV 120

Query: 121 ICWCLLVIFMFFLPNEIVSFY 141
           ICW LLV+ MFF+PNEI++FY
Sbjct: 121 ICWFLLVVLMFFVPNEIITFY 141

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
TAIR|locus:2200507	412	AT1G16180 "AT1G16180" [Arabido	0.832	0.288	0.924	6.4e-60
TAIR|locus:2082415	409	AT3G06170 [Arabidopsis thalian	0.825	0.288	0.663	2e-40
TAIR|locus:2094869	409	AT3G24460 [Arabidopsis thalian	0.818	0.286	0.322	1.1e-12
ASPGD|ASPL0000007954	476	AN11244 [Emericella nidulans (	0.783	0.235	0.339	6.7e-12
TAIR|locus:505006454	394	MEE55 "maternal effect embryo	0.825	0.299	0.316	1.2e-11
TAIR|locus:504956041	422	AT2G33205 "AT2G33205" [Arabido	0.783	0.265	0.274	1e-09
UNIPROTKB|F1MBF9	443	SERINC1 "Serine incorporator 1	0.391	0.126	0.392	7.2e-07
UNIPROTKB|Q3MHV9	453	SERINC1 "Serine incorporator 1	0.391	0.123	0.392	7.5e-07
UNIPROTKB|Q9NRX5	453	SERINC1 "Serine incorporator 1	0.391	0.123	0.392	9.6e-07
UNIPROTKB|E2RRW6	453	SERINC1 "Uncharacterized prote	0.391	0.123	0.392	1.2e-06

TAIR|locus:2200507 AT1G16180 "AT1G16180" [Arabidopsis thaliana (taxid:3702)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 110/119 (92%), Positives = 117/119 (98%)

Query:    23 VSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKLPWINHFHKTPSREWFETDAVLR 82
             VSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKLPWINHFHKTP REWFETDAVLR
Sbjct:    23 VSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKLPWINHFHKTPDREWFETDAVLR 82

Query:    83 VSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPNEIVSFY 141
             VSLGNFLFF+ILS++M+GVKNQKDPRD +HHGGWMMKIICWC+LVIFMFFLPNEI+SFY
Sbjct:    83 VSLGNFLFFSILSVMMIGVKNQKDPRDGIHHGGWMMKIICWCILVIFMFFLPNEIISFY 141

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2082415 AT3G06170 [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 79/119 (66%), Positives = 96/119 (80%)

Query:    24 SGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKLPWINHFHKTPSREWFETDAVLRV 83
             SGISR+SARIAYCGLF  SL+VSWILRE  APL+EKLPWIN    + ++EW++  AVLRV
Sbjct:    22 SGISRKSARIAYCGLFGASLVVSWILRETGAPLLEKLPWINT-SDSYTKEWYQQQAVLRV 80

Query:    84 SLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPNEIVSFYG 142
             S GNFLFF I +++M+GVK+Q D RDS HHGGW +K+I W LLV+ MFF+PN IVS YG
Sbjct:    81 SFGNFLFFAIYALIMIGVKDQNDRRDSWHHGGWGLKMIVWFLLVVLMFFVPNVIVSLYG 139

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2094869 AT3G24460 [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 39/121 (32%), Positives = 60/121 (49%)

Query:    24 SGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKLPWINHFHKTPSRE-WFETDAVLR 82
             +G +   AR  Y  +F ++ +++W  R+     + K   +  F      E    TD VLR
Sbjct:    33 NGCNPWMARYVYGLIFLIANLLAWAARDYGRGALRK---VTRFKNCKGGENCLGTDGVLR 89

Query:    83 VSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPNEIVSFYG 142
             VSLG FLF+ ++ +  +G       RD  H G W +K+I W  L I  F LP+ I+  YG
Sbjct:    90 VSLGCFLFYFVMFLSTLGTSKTHSSRDRWHSGWWFVKLIMWPALTIIPFLLPSSIIHLYG 149

Query:   143 K 143
             +
Sbjct:   150 E 150

GO:0016020 "membrane" evidence=IEA;ISS

ASPGD|ASPL0000007954 AN11244 [Emericella nidulans (taxid:162425)]

 Score = 169 (64.5 bits), Expect = 6.7e-12, P = 6.7e-12
 Identities = 39/115 (33%), Positives = 64/115 (55%)

Query:    30 SARIAYCGLFALSLIVSWI-LREVAAPLMEKLPWINHFH-KTPSREWFETDAVLRVSLGN 87
             + RIAY  +  ++ IVSWI L   A   ++ L  +++   K   +E +   AV R++ G 
Sbjct:    46 ATRIAYAFILLINSIVSWIMLTPWALKKLQHLT-LDYMEIKCDGKECYGWVAVHRINFGL 104

Query:    88 FLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPNEIVSFYG 142
              LF  +L++ ++GV++ KD R +L +G W  KI+ W L V+  FF+P      YG
Sbjct:   105 GLFHLVLALFLLGVRSSKDGRAALQNGFWGPKIVLWLLFVVMSFFIPEAFFFVYG 159

GO:0008150 "biological_process" evidence=ND

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:505006454 MEE55 "maternal effect embryo arrest 55" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 38/120 (31%), Positives = 60/120 (50%)

Query:    24 SGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKLPWINHFHKTPSREWFETDAVLRV 83
             +G +   AR  Y  +F L+ +++W LR+     + ++    +  +    +   T+ VLRV
Sbjct:    26 NGCNPWMARYVYGLIFLLANLLAWALRDYGRGALTEMRKFKNCKE--GGDCLGTEGVLRV 83

Query:    84 SLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPNEIVSFYGK 143
             S G FLF+ I+ +  VG       RD  H G W  K+     L IF F LP+ I+ FYG+
Sbjct:    84 SFGCFLFYFIMFLSTVGTSKTHSSRDKWHSGWWFAKLFMLLGLTIFPFLLPSSIIQFYGE 143

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

TAIR|locus:504956041 AT2G33205 "AT2G33205" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 31/113 (27%), Positives = 57/113 (50%)

Query:    31 ARIAYCGLFALSLIVSWILREVAAPLMEKLPWINHFHKTPSREWFETDAVLRVSLGNFLF 90
             AR  Y  +F +  + +W +R+ A   +  LP+++      SR  F T  VLRVSLG F+F
Sbjct:    49 ARYTYGTIFLIINLCAWFIRDYAQKALALLPYVSSCGPEGSR-CFHTLGVLRVSLGCFIF 107

Query:    91 FTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPNEIVSFYGK 143
             + ++ +         + ++S H   W+ K     ++++  FF+P   +  YG+
Sbjct:   108 YFVMFLSTWNTMKLHEAQNSWHSDNWIFKFFLLVIVMVASFFIPQLYIQIYGE 160

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

UNIPROTKB|F1MBF9 SERINC1 "Serine incorporator 1" [Bos taurus (taxid:9913)]

 Score = 122 (48.0 bits), Expect = 7.2e-07, P = 7.2e-07
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query:    79 AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLP 134
             AV R+  G  +F+ +LS+LM+ VK+  DPR ++H+G W  K      ++I  FF+P
Sbjct:    80 AVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAIHNGFWFFKFAAAIAIIIGAFFIP 135

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q3MHV9 SERINC1 "Serine incorporator 1" [Bos taurus (taxid:9913)]

 Score = 122 (48.0 bits), Expect = 7.5e-07, P = 7.5e-07
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query:    79 AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLP 134
             AV R+  G  +F+ +LS+LM+ VK+  DPR ++H+G W  K      ++I  FF+P
Sbjct:    89 AVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAIHNGFWFFKFAAAIAIIIGAFFIP 144

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008654 "phospholipid biosynthetic process" evidence=IEA

UNIPROTKB|Q9NRX5 SERINC1 "Serine incorporator 1" [Homo sapiens (taxid:9606)]

 Score = 121 (47.7 bits), Expect = 9.6e-07, P = 9.6e-07
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query:    79 AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLP 134
             AV R+  G  +F+ +LS+LM+ VK+  DPR ++H+G W  K      ++I  FF+P
Sbjct:    89 AVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAVHNGFWFFKFAAAIAIIIGAFFIP 144

GO:0008654 "phospholipid biosynthetic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006665 "sphingolipid metabolic process" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0006658 "phosphatidylserine metabolic process" evidence=ISS

GO:0015194 "L-serine transmembrane transporter activity" evidence=ISS

GO:0015825 "L-serine transport" evidence=ISS

GO:0051347 "positive regulation of transferase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E2RRW6 SERINC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 120 (47.3 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query:    79 AVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLP 134
             AV R+  G  +F+ +LS+LM+ VK+  DPR ++H+G W  K      ++I  FF+P
Sbjct:    89 AVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAVHNGFWFFKFATAIAIIIGAFFIP 144

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT1G16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein; TMS membrane family protein / tumour differentially expressed (TDE) family protein; FUNCTIONS IN- molecular_function unknown; LOCATED IN- endomembrane system, membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- TMS membrane protein/tumour differentially expressed protein (InterPro-IPR005016); BEST Arabidopsis thaliana protein match is- TMS membrane family protein / tumour differentially expressed (TDE) family protein (TAIR-AT3G06170.1); Has 608 Bl [...] (412 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT3G10650	unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (1309 aa)					•				0.819
	AT3G30390	amino acid transporter family protein; Encodes a putative amino acid transporter. (460 aa)				•					0.657
	AT5G19860	unknown protein; unknown protein; INVOLVED IN- biological_process unknown; LOCATED IN- vacuole; [...] (181 aa)				•					0.554
	AT3G17410	serine/threonine protein kinase, putative; serine/threonine protein kinase, putative; FUNCTIONS [...] (364 aa)				•					0.510
	UBC1	UBC1 (UBIQUITIN CARRIER PROTEIN 1); ubiquitin-protein ligase; ubiquitin carrier protein ; Catal [...] (152 aa)				•					0.483
	AT3G51730	saposin B domain-containing protein; saposin B domain-containing protein; FUNCTIONS IN- molecul [...] (213 aa)				•					0.462
	AT4G15470	unknown protein; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAIN [...] (256 aa)				•					0.443
	AT5G38470	DNA repair protein RAD23, putative; DNA repair protein RAD23, putative; FUNCTIONS IN- damaged D [...] (378 aa)				•					0.424
	AT4G28770	unknown protein; FUNCTIONS IN- molecular_function unknown; LOCATED IN- plasma membrane, vacuole [...] (281 aa)				•					0.422
	AT4G01610	cathepsin B-like cysteine protease, putative; cathepsin B-like cysteine protease, putative; FUN [...] (359 aa)				•					0.420

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	143
pfam03348	428	pfam03348, Serinc, Serine incorporator (Serinc)	1e-40

>gnl|CDD|217505 pfam03348, Serinc, Serine incorporator (Serinc)

 Score =  139 bits (353), Expect = 1e-40
 Identities = 53/139 (38%), Positives = 71/139 (51%), Gaps = 4/139 (2%)

Query: 8   ASCCAACACDACRSAVSGI-SRRSARIAYCGLFALSLIVSWILRE--VAAPLMEKLPWIN 64
           A CC + AC  C S    I +  S RIAY  +  L+ IVSWI+    V   L +K+P   
Sbjct: 1   ACCCGSAACSLCCSCCPSIKNSTSTRIAYALILLLNSIVSWIMLSPGVIKKLKKKIPGFC 60

Query: 65  HFHKTPSREWFETDAVLRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWC 124
                P  E     AV RV     LFF IL++LM+GVK+ KDPR ++ +G W  KI+   
Sbjct: 61  GVD-CPDSECVGYSAVYRVCFALALFFLILALLMLGVKSSKDPRAAIQNGFWFFKILLLI 119

Query: 125 LLVIFMFFLPNEIVSFYGK 143
            L++  FF+PN    F   
Sbjct: 120 GLIVGAFFIPNGFFFFVWM 138

This is a family of eukaryotic membrane proteins which incorporate serine into membranes and facilitate the synthesis of the serine-derived lipids phosphatidylserine and sphingolipid. Members of this family contain 11 transmembrane domains and form intracellular complexes with key enzymes involved in serine and sphingolipid biosynthesis. Length = 428

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
KOG2592	426	consensus Tumor differentially expressed (TDE) pro	100.0
PF03348	429	Serinc: Serine incorporator (Serinc); InterPro: IP	100.0

>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]

Probab=100.00  E-value=2.8e-44  Score=301.26  Aligned_cols=139  Identities=35%  Similarity=0.649  Sum_probs=129.0

Q ss_pred             CchhhhhHHhhhhhhhccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccccccCCCCcccchhhhHH
Q 032312            1 MWAASCLASCCAACACDACRSAVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKLPWINHFHKTPSREWFETDAV   80 (143)
Q Consensus         1 ~~~~~~~~~c~g~~~c~~c~~~~~~~~s~~tR~~Ya~~~l~~~i~a~i~~~~~~~~~~~~~~~~~~~~~~~~~c~G~~aV   80 (143)
                      +.++++++||||+++|-+|.+||+.+||++||++|+++++++++++|+|+-..++.++|.||+++.  .||++++|+.||
T Consensus         1 ~~~~s~~~cc~g~~acl~cs~cps~~nst~tRl~ya~~l~l~~~vs~i~~~~~~~~l~k~p~~c~~--~~c~~~~gy~AV   78 (426)
T KOG2592|consen    1 PSAASSVACCCGGAACLLCSCCPSLTNSTVTRLIYAFILLLGTLVSWIMLPGAEKQLNKLPWFCEG--NDCGKLLGYKAV   78 (426)
T ss_pred             CchHHHHHHhhcchHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhCCccccC--CCcccchhhhHH
Confidence            357789999999999977888999999999999999999999999999997667778899998863  478899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCcchhhhhccchHHHHHHHHHHHHHHhcccccccccc
Q 032312           81 LRVSLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPNEIVSFY  141 (143)
Q Consensus        81 yRvsfal~~Ff~l~~l~~igv~~~~d~Ra~ihnG~W~~K~~~~~~l~i~~FfIP~~~f~~Y  141 (143)
                      ||+|||+++||++++++|+|||+++|||++||||||++|+++|+++++++|||||++|..+
T Consensus        79 yR~~f~~a~Ff~~lsllm~gVkss~D~R~~iqng~W~fK~i~~~~l~i~~FfIP~~~~~~~  139 (426)
T KOG2592|consen   79 YRLCFGLACFFLLLSLLMIGVKSSKDPRAAIQNGFWFFKFILWFGLIVGSFFIPNGFFISF  139 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHcCcHHHHHHHHHHHHHheEEcCCccchhH
Confidence            9999999999999999999999999999999999999999999999999999999888643

>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines

Probab=100.00  E-value=1.4e-41  Score=291.61  Aligned_cols=134  Identities=37%  Similarity=0.744  Sum_probs=118.8

Q ss_pred             HHhhhhhhhcccc-CCCCC-CcchhHHHHHHHHHHHHHHHHHHHHH--HHHhHHhhcccccccCCCCcccchhhhHHHHH
Q 032312            8 ASCCAACACDACR-SAVSG-ISRRSARIAYCGLFALSLIVSWILRE--VAAPLMEKLPWINHFHKTPSREWFETDAVLRV   83 (143)
Q Consensus         8 ~~c~g~~~c~~c~-~~~~~-~~s~~tR~~Ya~~~l~~~i~a~i~~~--~~~~~~~~~~~~~~~~~~~~~~c~G~~aVyRv   83 (143)
                      |||||+++|++|| ||++. ++|++||++|+++|+++++++|+|++  +.+++.+++|++++- ++++++|+|++||||+
T Consensus         1 acCcgsaaCs~~c~~c~~~~~~s~~tR~~Ya~~~l~~~i~a~i~~~~~~~~~l~~~~~~~~~~-~C~~~~c~G~~aVyRv   79 (429)
T PF03348_consen    1 ACCCGSAACSLCCSCCPSCFKSSTSTRIMYALIFLLGTILAWIMLSPGVESKLKKKIPWFCGF-DCPSDSCVGYSAVYRV   79 (429)
T ss_pred             CCchhHhHHHHHHhccCCcCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccCCC-CcchHHhhhhHHHHHH
Confidence            6899999998754 56676 89999999999999999999999999  777777778877620 1124889999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCcchhhhhccchHHHHHHHHHHHHHHhcccc-ccccccc
Q 032312           84 SLGNFLFFTILSILMVGVKNQKDPRDSLHHGGWMMKIICWCLLVIFMFFLPN-EIVSFYG  142 (143)
Q Consensus        84 sfal~~Ff~l~~l~~igv~~~~d~Ra~ihnG~W~~K~~~~~~l~i~~FfIP~-~~f~~Yg  142 (143)
                      |||+++||++|+++|+|||+++|+|++||||||++|+++|+++++++||||| .|+.+|+
T Consensus        80 sfal~~Ff~l~~l~~i~v~~~~d~Ra~ihng~W~~K~l~l~~l~v~~FfiP~~~f~~~~~  139 (429)
T PF03348_consen   80 SFALALFFFLMALLTIGVKSSRDPRAAIHNGFWFLKFLLLIGLIVGAFFIPNGSFINVYM  139 (429)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCccHHHHHHHhhHHHHHHHHHHHHheeEEeCchHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999 6666664

The function of these proteins is unknown. ; GO: 0016020 membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00