Citrus Sinensis ID: 032335

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MSTFDSVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKSTEVS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccccc
Coil and Loop (DISEMBL)
mstfdsvdsvpvaeythsfddtAEQLnsavdlsddnnnssfqsgddafasqtsvygeyadggsdgpilpppsdmvpeegFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTrennkasnrerekstevs
Flexible Loop (DISEMBL)
mstfdsvdsvpVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRleekekkeKEMLNQIIEEaeeyklefyrksivtrennkasnrerekstevs
Low Complexity Region (SEG)
MSTFDSVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLeekekkekeMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKSTEVS
Disordered region (IsUnstruct)
**********************************************************************************************************II**AEEYKLEFYRKSI********************
Disordered Region (DISOPRED)
*********************************************************************************LREWRR********************IEEAEEYKLEFYRKSI********************
Disordered Region (DISEMBL)
*********VPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTR*****************
Disordered Region (DISPRO)
***************************************************************DGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNK*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTFDSVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGGSDGPILPPPSDMVPEEGFAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFYRKSIVTRENNKASNREREKSTEVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
O04209	258	Clathrin light chain 2 OS	yes	no	0.860	0.476	0.541	3e-24
F4J5M9	258	Clathrin light chain 3 OS	no	no	0.503	0.279	0.736	2e-18
Q7XKE9	301	Clathrin light chain 1 OS	yes	no	0.538	0.255	0.662	7e-17
Q9SKU1	338	Clathrin light chain 1 OS	no	no	0.524	0.221	0.671	1e-14
Q5Z402	291	Clathrin light chain 2 OS	no	no	0.524	0.257	0.626	2e-14
Q6Z3A8	363	Clathrin light chain 3 OS	no	no	0.531	0.209	0.545	4e-12

>sp|O04209|CLC2_ARATH Clathrin light chain 2 OS=Arabidopsis thaliana GN=CLC2 PE=1 SV=1

 Score =  110 bits (275), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/144 (54%), Positives = 102/144 (70%), Gaps = 21/144 (14%)

Query: 5   DSVDSVPVAEYTHSFD--DTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADG- 61
           D+ +SVPV   + SFD  D+    + ++ + D        S DD FA+ +S YG Y++G 
Sbjct: 15  DASESVPV---SGSFDATDSFSAFDGSLQVED--------SVDDVFAAPSSDYGAYSNGD 63

Query: 62  ---GS----DGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEY 114
              GS    DGPILPPPS+M  +EGFALREWRR+NAI+LEEKEK+EKE+L QIIEEA++Y
Sbjct: 64  GIFGSNGDHDGPILPPPSEMESDEGFALREWRRQNAIQLEEKEKREKELLKQIIEEADQY 123

Query: 115 KLEFYRKSIVTRENNKASNREREK 138
           K EF++K  VT ENNKA+NRE+EK
Sbjct: 124 KEEFHKKIEVTCENNKAANREKEK 147

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.
Arabidopsis thaliana (taxid: 3702)

>sp|F4J5M9|CLC3_ARATH Clathrin light chain 3 OS=Arabidopsis thaliana GN=At3g51890 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/72 (73%), Positives = 59/72 (81%)

Query: 67  ILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTR 126
           ILPPPS M  EEGFALREWRR NA+RLEEKEK+EKEM+ QI+E AE+YK EFY K  VT 
Sbjct: 85  ILPPPSAMEKEEGFALREWRRLNALRLEEKEKEEKEMVQQILEAAEQYKAEFYSKRNVTI 144

Query: 127 ENNKASNREREK 138
           ENNK  NRE+EK
Sbjct: 145 ENNKKLNREKEK 156

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XKE9|CLC1_ORYSJ Clathrin light chain 1 OS=Oryza sativa subsp. japonica GN=Os04g0679100 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 51/77 (66%), Positives = 57/77 (74%)

Query: 62  GSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRK 121
           G DGPILPPP+ M  EEG  LREWRR+NAI LEEKE+KEKE+  QI+ EAEE+K  FY K
Sbjct: 92  GGDGPILPPPAQMGAEEGILLREWRRQNAIVLEEKERKEKELRAQILAEAEEFKKAFYEK 151

Query: 122 SIVTRENNKASNREREK 138
            I   E NK  NREREK
Sbjct: 152 RIQNCETNKVHNREREK 168

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SKU1|CLC1_ARATH Clathrin light chain 1 OS=Arabidopsis thaliana GN=At2g20760 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/76 (67%), Positives = 56/76 (73%), Gaps = 1/76 (1%)

Query: 63  SDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKS 122
           SDGPILP P++M  EEGF  REWRR N I LEEKEKKEKEM NQII EAE++K  FY K 
Sbjct: 93  SDGPILPDPNEMR-EEGFQRREWRRLNTIHLEEKEKKEKEMRNQIITEAEDFKKAFYEKR 151

Query: 123 IVTRENNKASNREREK 138
             T E NK  NRE+EK
Sbjct: 152 DKTIETNKTDNREKEK 167

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5Z402|CLC2_ORYSJ Clathrin light chain 2 OS=Oryza sativa subsp. japonica GN=Os06g0731800 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/75 (62%), Positives = 57/75 (76%)

Query: 64  DGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSI 123
           +GP+LPPP+ M  +EGF LREWRR+NAI LEEKEKKEKEM NQII +A+E+K  F  K  
Sbjct: 76  NGPVLPPPNQMGADEGFLLREWRRQNAILLEEKEKKEKEMRNQIILDAKEFKKAFVEKRK 135

Query: 124 VTRENNKASNREREK 138
           +  E +K  NREREK
Sbjct: 136 LNVETSKDQNREREK 150

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z3A8|CLC3_ORYSJ Clathrin light chain 3 OS=Oryza sativa subsp. japonica GN=Os07g0461500 PE=3 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/77 (54%), Positives = 54/77 (70%), Gaps = 1/77 (1%)

Query: 62  GSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRK 121
           G DGP+LPPP  M  EEG   REWRR+NA+ LEEKE+KE+E   +II EA+E+K  F  K
Sbjct: 133 GDDGPVLPPPEAMK-EEGILRREWRRQNALMLEEKERKERERRGEIIAEADEFKRSFAEK 191

Query: 122 SIVTRENNKASNREREK 138
             +  + N+A NR+REK
Sbjct: 192 RKLNGDTNRAQNRDREK 208

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
224112533	252	predicted protein [Populus trichocarpa]	0.692	0.392	0.580	3e-27
118485757	151	unknown [Populus trichocarpa]	0.692	0.655	0.718	1e-25
224139084	177	predicted protein [Populus trichocarpa]	0.671	0.542	0.71	2e-25
255571907	268	conserved hypothetical protein [Ricinus	0.692	0.369	0.666	6e-25
224098537	258	predicted protein [Populus trichocarpa]	0.923	0.511	0.458	2e-23
356494973	260	PREDICTED: uncharacterized protein LOC10	0.580	0.319	0.755	6e-23
18405251	258	Clathrin light chain protein [Arabidopsi	0.860	0.476	0.541	2e-22
449516147	290	PREDICTED: clathrin light chain 2-like [	0.699	0.344	0.552	2e-22
449460303	290	PREDICTED: clathrin light chain 3-like [	0.699	0.344	0.552	2e-22
21593842	258	unknown [Arabidopsis thaliana]	0.874	0.484	0.570	3e-22

>gi|224112533|ref|XP_002316222.1| predicted protein [Populus trichocarpa] gi|222865262|gb|EEF02393.1| predicted protein [Populus trichocarpa]

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/105 (58%), Positives = 80/105 (76%), Gaps = 6/105 (5%)

Query: 40  SFQSGDDAFASQTSVYGEYA------DGGSDGPILPPPSDMVPEEGFALREWRRENAIRL 93
           SF +G+D F SQ  +YGE++       GG +GPI PPPS+   E+GFALREWRR+NAI L
Sbjct: 34  SFAAGNDVFESQLPIYGEFSPLENGGSGGPEGPIFPPPSEKDAEQGFALREWRRQNAILL 93

Query: 94  EEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREK 138
           E+KEK+EKE L+QII+EAE+YK+E Y+K  +  ENNK +NRE+EK
Sbjct: 94  EDKEKREKEALSQIIKEAEDYKVESYKKREIACENNKITNREKEK 138

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485757|gb|ABK94728.1| unknown [Populus trichocarpa]

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/103 (71%), Positives = 84/103 (81%), Gaps = 4/103 (3%)

Query: 43  SGDDAFASQ-TSVYGEYA---DGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEK 98
           +GDD F+SQ  S  G ++   +G SDGPILPPPS+M  EEGFALREWRRENAIRLEEKEK
Sbjct: 40  TGDDLFSSQPVSDDGGFSPEQNGISDGPILPPPSEMESEEGFALREWRRENAIRLEEKEK 99

Query: 99  KEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKSTE 141
           KEKEML QI+EEAEEYK EFYRK  +T ENNKA+NRE+EK  E
Sbjct: 100 KEKEMLKQIVEEAEEYKKEFYRKRQLTLENNKAANREKEKVRE 142

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139084|ref|XP_002322976.1| predicted protein [Populus trichocarpa] gi|222867606|gb|EEF04737.1| predicted protein [Populus trichocarpa]

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/100 (71%), Positives = 80/100 (80%), Gaps = 4/100 (4%)

Query: 43  SGDDAFASQT----SVYGEYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEK 98
           +GDD F+SQ       +    +G SDGPILPPPS+M  EEGFALREWRRENAIRLEEKEK
Sbjct: 40  TGDDLFSSQPVSDDGGFSPEQNGISDGPILPPPSEMESEEGFALREWRRENAIRLEEKEK 99

Query: 99  KEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREK 138
           KEKEML QI+EEAEEYK EFYRK  +T ENNKA+NRE+EK
Sbjct: 100 KEKEMLKQIVEEAEEYKKEFYRKRQLTLENNKAANREKEK 139

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571907|ref|XP_002526896.1| conserved hypothetical protein [Ricinus communis] gi|223533795|gb|EEF35527.1| conserved hypothetical protein [Ricinus communis]

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/105 (66%), Positives = 85/105 (80%), Gaps = 6/105 (5%)

Query: 40  SFQSGDDAFAS---QTSVYGEYA---DGGSDGPILPPPSDMVPEEGFALREWRRENAIRL 93
           SF   DD F S   Q + Y ++A   +GGSDGPILPPPS M  EEGFALREWRRENA++L
Sbjct: 44  SFTGNDDVFESHHHQPAAYVDFASEENGGSDGPILPPPSGMEAEEGFALREWRRENALKL 103

Query: 94  EEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREK 138
           EEKEK+EKE+L+QII+EA+EYK+EFYRK  +T ENNKA+NRE+EK
Sbjct: 104 EEKEKREKEILSQIIQEADEYKVEFYRKREITCENNKATNREKEK 148

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098537|ref|XP_002311210.1| predicted protein [Populus trichocarpa] gi|222851030|gb|EEE88577.1| predicted protein [Populus trichocarpa]

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/144 (45%), Positives = 91/144 (63%), Gaps = 12/144 (8%)

Query: 1   MSTFDSVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYAD 60
           MS F   +S   +E T  FDD     +S    +    + SF +GDD   SQ  +YG+++ 
Sbjct: 1   MSAF--AESFAQSESTRPFDDD----DSYAGYNSQPFDDSFATGDDVLESQPPIYGQFSP 54

Query: 61  ------GGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEY 114
                 GGS+G I   PS+   E+G AL EWRR+N I LE+KE++EKE+L+QII+EAE+Y
Sbjct: 55  QENGEFGGSEGRISLSPSETEAEQGLALIEWRRQNVILLEDKERREKEVLSQIIKEAEDY 114

Query: 115 KLEFYRKSIVTRENNKASNREREK 138
           K+EFY+K   T ENNK +NRE+EK
Sbjct: 115 KVEFYKKRQFTCENNKTTNREKEK 138

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356494973|ref|XP_003516355.1| PREDICTED: uncharacterized protein LOC100783050 [Glycine max]

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/86 (75%), Positives = 73/86 (84%), Gaps = 3/86 (3%)

Query: 56  GEYADGG---SDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAE 112
           G+  DGG   SDGPILPPP++MV +EGFALREWR +NAI+LEEKEKKEKEM +QIIEEAE
Sbjct: 55  GKGVDGGFGASDGPILPPPTNMVAKEGFALREWRMQNAIQLEEKEKKEKEMRSQIIEEAE 114

Query: 113 EYKLEFYRKSIVTRENNKASNREREK 138
           EYK+EFYRK  V  E NKASNREREK
Sbjct: 115 EYKIEFYRKREVNAEKNKASNREREK 140

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18405251|ref|NP_565921.1| Clathrin light chain protein [Arabidopsis thaliana] gi|75096962|sp|O04209.1|CLC2_ARATH RecName: Full=Clathrin light chain 2 gi|2088662|gb|AAB95291.1| expressed protein [Arabidopsis thaliana] gi|20260192|gb|AAM12994.1| unknown protein [Arabidopsis thaliana] gi|21387051|gb|AAM47929.1| unknown protein [Arabidopsis thaliana] gi|110741048|dbj|BAE98618.1| hypothetical protein [Arabidopsis thaliana] gi|330254676|gb|AEC09770.1| Clathrin light chain protein [Arabidopsis thaliana]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/144 (54%), Positives = 102/144 (70%), Gaps = 21/144 (14%)

Query: 5   DSVDSVPVAEYTHSFD--DTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADG- 61
           D+ +SVPV   + SFD  D+    + ++ + D        S DD FA+ +S YG Y++G 
Sbjct: 15  DASESVPV---SGSFDATDSFSAFDGSLQVED--------SVDDVFAAPSSDYGAYSNGD 63

Query: 62  ---GS----DGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEY 114
              GS    DGPILPPPS+M  +EGFALREWRR+NAI+LEEKEK+EKE+L QIIEEA++Y
Sbjct: 64  GIFGSNGDHDGPILPPPSEMESDEGFALREWRRQNAIQLEEKEKREKELLKQIIEEADQY 123

Query: 115 KLEFYRKSIVTRENNKASNREREK 138
           K EF++K  VT ENNKA+NRE+EK
Sbjct: 124 KEEFHKKIEVTCENNKAANREKEK 147

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516147|ref|XP_004165109.1| PREDICTED: clathrin light chain 2-like [Cucumis sativus]

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 78/105 (74%), Gaps = 5/105 (4%)

Query: 37  NNSSFQSGDDAFASQTSVYGEYADGG---SDGPILPPPSDMVPEEGFALREWRRENAIRL 93
            N S   G  +F+SQ +  G+  DGG   SDGPIL  P+ M PEEGF LREWRR NAIRL
Sbjct: 63  TNFSAGGGFSSFSSQQN--GKGFDGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRL 120

Query: 94  EEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREK 138
           EEKEK+E E+L +II+EA++YK+EFYR+  +  +++KA+NR++EK
Sbjct: 121 EEKEKREMELLEEIIDEADQYKIEFYRRRKLALDHSKATNRDKEK 165

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460303|ref|XP_004147885.1| PREDICTED: clathrin light chain 3-like [Cucumis sativus]

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 78/105 (74%), Gaps = 5/105 (4%)

Query: 37  NNSSFQSGDDAFASQTSVYGEYADGG---SDGPILPPPSDMVPEEGFALREWRRENAIRL 93
            N S   G  +F+SQ +  G+  DGG   SDGPIL  P+ M PEEGF LREWRR NAIRL
Sbjct: 63  TNFSAGGGFSSFSSQQN--GKGFDGGFGESDGPILSSPTAMEPEEGFPLREWRRLNAIRL 120

Query: 94  EEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREK 138
           EEKEK+E E+L +II+EA++YK+EFYR+  +  +++KA+NR++EK
Sbjct: 121 EEKEKREMELLEEIIDEADQYKIEFYRRRKLALDHSKATNRDKEK 165

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593842|gb|AAM65809.1| unknown [Arabidopsis thaliana]

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/142 (57%), Positives = 102/142 (71%), Gaps = 17/142 (11%)

Query: 5   DSVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADG--- 61
           D+ +SVPV   + SFD T  +  SA D S    +S     DD FA+ +S YG Y++G   
Sbjct: 15  DASESVPV---SGSFDAT--ESFSAFDGSLQVEDSV----DDVFAAPSSDYGAYSNGDGI 65

Query: 62  -GS----DGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKL 116
            GS    DGPILPPPS+M  +EGFALREWRR+NAI+LEEKEK+EKE+L QIIEEA++YK 
Sbjct: 66  FGSNGDHDGPILPPPSEMESDEGFALREWRRQNAIQLEEKEKREKELLKQIIEEADQYKE 125

Query: 117 EFYRKSIVTRENNKASNREREK 138
           EF++K  VT ENNKA+NRE+EK
Sbjct: 126 EFHKKIEVTCENNKAANREKEK 147

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
TAIR|locus:2061196	258	CLC2 "clathrin light chain 2"	0.874	0.484	0.514	2.2e-25
TAIR|locus:2074378	258	CLC3 "clathrin light chain 3"	0.545	0.302	0.594	5.8e-18
TAIR|locus:2051472	338	AT2G20760 [Arabidopsis thalian	0.832	0.352	0.44	1.6e-15

TAIR|locus:2061196 CLC2 "clathrin light chain 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 73/142 (51%), Positives = 92/142 (64%)

Query:     5 DSVDSVPVAEYTHSFDDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADG--- 61
             D+ +SVPV+    SFD T     SA D S    +S     DD FA+ +S YG Y++G   
Sbjct:    15 DASESVPVSG---SFDATDSF--SAFDGSLQVEDSV----DDVFAAPSSDYGAYSNGDGI 65

Query:    62 -GS----DGPILPPPSDMVPEEGFALREWRRENAIRLXXXXXXXXXMLNQIIEEAEEYKL 116
              GS    DGPILPPPS+M  +EGFALREWRR+NAI+L         +L QIIEEA++YK 
Sbjct:    66 FGSNGDHDGPILPPPSEMESDEGFALREWRRQNAIQLEEKEKREKELLKQIIEEADQYKE 125

Query:   117 EFYRKSIVTRENNKASNREREK 138
             EF++K  VT ENNKA+NRE+EK
Sbjct:   126 EFHKKIEVTCENNKAANREKEK 147

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

TAIR|locus:2074378 CLC3 "clathrin light chain 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 47/79 (59%), Positives = 53/79 (67%)

Query:    60 DGGSDGPILPPPSDMVPEEGFALREWRRENAIRLXXXXXXXXXMLNQIIEEAEEYKLEFY 119
             D  +D  ILPPPS M  EEGFALREWRR NA+RL         M+ QI+E AE+YK EFY
Sbjct:    79 DDTNDS-ILPPPSAMEKEEGFALREWRRLNALRLEEKEKEEKEMVQQILEAAEQYKAEFY 137

Query:   120 RKSIVTRENNKASNREREK 138
              K  VT ENNK  NRE+EK
Sbjct:   138 SKRNVTIENNKKLNREKEK 156

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2051472 AT2G20760 [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 55/125 (44%), Positives = 67/125 (53%)

Query:    18 SFD-DTAEQLNSAVDLSDDNNN--SSFQSG-DDAFASQTSVYGEYADGGSDGPILPPPSD 73
             SF+ D A         S  N++  S F+S  +DA  +     G+ A   SDGPILP P++
Sbjct:    45 SFNGDPASPNGYGFGASSPNHDFSSPFESSVNDANGNGGGSGGD-AIFASDGPILPDPNE 103

Query:    74 MVPEEGFALREWRRENAIRLXXXXXXXXXMLNQIIEEAEEYKLEFYRKSIVTRENNKASN 133
             M  EEGF  REWRR N I L         M NQII EAE++K  FY K   T E NK  N
Sbjct:   104 M-REEGFQRREWRRLNTIHLEEKEKKEKEMRNQIITEAEDFKKAFYEKRDKTIETNKTDN 162

Query:   134 REREK 138
             RE+EK
Sbjct:   163 REKEK 167


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.307   0.126   0.345    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      143       134   0.00091  102 3  11 23  0.38    32
                                                     30  0.44    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  537 (57 KB)
  Total size of DFA:  122 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.22u 0.16s 15.38t   Elapsed:  00:00:00
  Total cpu time:  15.22u 0.16s 15.38t   Elapsed:  00:00:00
  Start:  Sat May 11 02:01:20 2013   End:  Sat May 11 02:01:20 2013

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00101845 hypothetical protein (252 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	143
pfam01086	225	pfam01086, Clathrin_lg_ch, Clathrin light chain	9e-06

>gnl|CDD|216292 pfam01086, Clathrin_lg_ch, Clathrin light chain

 Score = 43.2 bits (102), Expect = 9e-06
 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 4/119 (3%)

Query: 20  DDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGGSDGPILPPPSDMVPEEG 79
           DD   +  S+    D  N +    G          Y E  D  S    +     +  EE 
Sbjct: 56  DDEISEFESSFPDVDTANEAVAPGGTIN----GDGYQEPDDPTSGYASISQADRVEGEEP 111

Query: 80  FALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREK 138
            ++R+WR    +R+EE+++  ++   ++IE+A++   +FY      +E  KA NR+  +
Sbjct: 112 ESIRKWRERRDLRIEERDEASEKKKEELIEKAQKEIDDFYENYNEKKEKTKAQNRKEAE 170

Length = 225

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
PF01086	225	Clathrin_lg_ch: Clathrin light chain; InterPro: IP	99.68
KOG4031	216	consensus Vesicle coat protein clathrin, light cha	99.09
PF08079	71	Ribosomal_L30_N: Ribosomal L30 N-terminal domain;	89.84

>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.68  E-value=5.5e-17  Score=130.65  Aligned_cols=75  Identities=36%  Similarity=0.513  Sum_probs=58.2

Q ss_pred             CCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccC
Q 032335           69 PPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKSTEVS  143 (143)
Q Consensus        69 PpP~em~~EEg~~LREWRRqNA~~LeeKEk~EKe~r~qII~eAEeyk~eFYeKR~~~~E~nK~~NREkEk~fLAs  143 (143)
                      +++..+..|++.+||+||++++++|++|++++++++.+|+++|..+++.||++|+.+++++|+.||+.|+.||++
T Consensus       101 ~~~~~~~~E~~e~ireWre~~~~~i~ekD~~e~~kk~e~~~~A~k~lddfY~~~~~k~e~~k~~nr~~ee~fl~~  175 (225)
T PF01086_consen  101 SPAPPVEEEEPEAIREWREERDKRIEEKDAEEEEKKEEIKEKAKKELDDFYENRNEKKEKNKKQNREEEEEFLAK  175 (225)
T ss_dssp             ---STTTTS-TTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----------
T ss_pred             CccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            344455655699999999999999999999999999999999999999999999999999999999999999974

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.

>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=1.8e-09  Score=89.55  Aligned_cols=101  Identities=23%  Similarity=0.309  Sum_probs=77.4

Q ss_pred             CCCCCccCCCccccCCccCCCCCCCCCCCC--CCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032335           37 NNSSFQSGDDAFASQTSVYGEYADGGSDGP--ILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEY  114 (143)
Q Consensus        37 ~~~~~~~~dd~f~s~~~~~~~~~ng~~dgp--ilPpP~em~~EEg~~LREWRRqNA~~LeeKEk~EKe~r~qII~eAEey  114 (143)
                      |..++..-|.+=.+....+.+..||-.+|+  |.++|.  ..+|+..||.||.+++.+|++|+..++.++...+++|--.
T Consensus        63 ~e~~g~~~d~~~~~~~~~~f~~~nG~~d~~a~is~~~~--~~~epE~IRkWkeeQ~~rl~ekD~~sek~k~ElrekAkKe  140 (216)
T KOG4031|consen   63 FEESGPGIDALNGAVGGDVFQEDNGPADGYAGISQGPR--LRDEPEKIRKWKEEQMKRLQEKDEASEKLKEELREKAKKE  140 (216)
T ss_pred             ccccCCCcchhhccccccccccCCCCcccccccCCCCC--cccChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            333443333333333333446667755555  445555  4589999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhh
Q 032335          115 KLEFYRKSIVTRENNKASNREREKS  139 (143)
Q Consensus       115 k~eFYeKR~~~~E~nK~~NREkEk~  139 (143)
                      +++||..+..+++.+|.+||..|.-
T Consensus       141 lddwy~~~~ek~~k~~~~nk~eee~  165 (216)
T KOG4031|consen  141 LDDWYDQQNEKLEKTKANNKAEEEA  165 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            9999999999999999999765543

>PF08079 Ribosomal_L30_N: Ribosomal L30 N-terminal domain; InterPro: IPR012988 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=89.84  E-value=2.9  Score=28.86  Aligned_cols=46  Identities=22%  Similarity=0.288  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032335           82 LREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRE  127 (143)
Q Consensus        82 LREWRRqNA~~LeeKEk~EKe~r~qII~eAEeyk~eFYeKR~~~~E  127 (143)
                      ..+|+...+....+.-..-+.+|..|+..|+.|..+|-..-...|.
T Consensus         9 ~~~~~~~~~~~~~~~k~~~~~~r~~~~kRAekY~kEYr~~erd~Ir   54 (71)
T PF08079_consen    9 NEKLKAKRAKKAAARKKKRKKKRKEIFKRAEKYVKEYRQKERDEIR   54 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3579999999999999999999999999999999998766555544

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This presumed domain is found at the N terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [].; PDB: 3IZR_e 3O5H_G 3O58_G 3IZS_e 4A1A_V 4A17_V 4A1E_V 4A1C_V.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-20
3lvh_D	205	LCB, clathrin light chain B; SELF assembly, coated	9e-18
1xi4_J	70	LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-p	2e-05

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 81.7 bits (201), Expect = 2e-20
 Identities = 20/66 (30%), Positives = 36/66 (54%)

Query: 73  DMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKAS 132
           D + +E  ++R+WR E   RL+E +   K M  +  E+A++   E+ ++     E NK +
Sbjct: 78  DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 137

Query: 133 NREREK 138
           NR  +K
Sbjct: 138 NRIADK 143

>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus} Length = 205

 Score = 75.0 bits (183), Expect = 9e-18
 Identities = 27/119 (22%), Positives = 53/119 (44%)

Query: 20  DDTAEQLNSAVDLSDDNNNSSFQSGDDAFASQTSVYGEYADGGSDGPILPPPSDMVPEEG 79
           +D      +           +  + +D  A+      + A+G +DG      +D + +E 
Sbjct: 40  NDEGFGAPAGSQGGLAQPGPASGASEDMGATVNGDVFQEANGPADGYAAIAQADRLTQEP 99

Query: 80  FALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREK 138
            ++R+WR E   RL+E +   K M  +  E+A++   E+ ++     E NK +NR  +K
Sbjct: 100 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 158

>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J Length = 70

 Score = 39.7 bits (92), Expect = 2e-05
 Identities = 17/67 (25%), Positives = 34/67 (50%)

Query: 73  DMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKAS 132
           D +  E  ++R+WR E   RLE  +   ++   +  E+A +   E+Y +     +  KA+
Sbjct: 2   DRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKAN 61

Query: 133 NREREKS 139
           NR  +++
Sbjct: 62  NRVADEA 68

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
1xi4_J	70	LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-p	99.68
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	99.66
3lvh_D	205	LCB, clathrin light chain B; SELF assembly, coated	99.49

>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J

Probab=99.68  E-value=1.7e-16  Score=110.22  Aligned_cols=65  Identities=25%  Similarity=0.323  Sum_probs=62.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhc
Q 032335           77 EEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNREREKSTE  141 (143)
Q Consensus        77 EEg~~LREWRRqNA~~LeeKEk~EKe~r~qII~eAEeyk~eFYeKR~~~~E~nK~~NREkEk~fL  141 (143)
                      +||.+||+||.+++.+|++|+..+++++..||.+|..+|+.||..|+.+++.+|++||..++.||
T Consensus         6 ~EpE~Ir~WRE~~~~~i~erd~~~~~~k~e~~~~A~k~iddfY~~yn~k~ek~~~~nR~~~e~Fl   70 (70)
T 1xi4_J            6 SEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKANNRVADEAFY   70 (70)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            46779999999999999999999999999999999999999999999999999999999999887

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}

Probab=99.66  E-value=7.2e-18  Score=135.49  Aligned_cols=89  Identities=22%  Similarity=0.267  Sum_probs=84.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 032335           55 YGEYADGGSDGPILPPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNR  134 (143)
Q Consensus        55 ~~~~~ng~~dgpilPpP~em~~EEg~~LREWRRqNA~~LeeKEk~EKe~r~qII~eAEeyk~eFYeKR~~~~E~nK~~NR  134 (143)
                      |..++||.+||++.+++.++..+||..||+||.++..+|++|++.+++++++++++|...+++||+.|+.++|.||++||
T Consensus        60 ~~qEsNGpsD~yaAIaqad~LeEEPEsIRKWREEQkkRLEeRDA~SekkKeEwrEKAKKELDDWYenYNEQ~EKnKa~NR  139 (190)
T 3lvg_D           60 XXXXXXXXXXXXXXIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR  139 (190)
T ss_dssp             CCCCHHHHHHHHHHHCCCSTTTTSTTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccccccccccccCcccccccCchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            55788888999999888888789999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccC
Q 032335          135 EREKSTEVS  143 (143)
Q Consensus       135 EkEk~fLAs  143 (143)
                      ..|+.||++
T Consensus       140 ~aEEeFLaq  148 (190)
T 3lvg_D          140 IADKAFYQQ  148 (190)
T ss_dssp             SSTTTSSHH
T ss_pred             HHHHHHHhC
Confidence            999999973

>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}

Probab=99.49  E-value=2.3e-14  Score=116.41  Aligned_cols=86  Identities=27%  Similarity=0.346  Sum_probs=67.6

Q ss_pred             CCCCCCCCCCCC-CCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 032335           57 EYADGGSDGPIL-PPPSDMVPEEGFALREWRRENAIRLEEKEKKEKEMLNQIIEEAEEYKLEFYRKSIVTRENNKASNRE  135 (143)
Q Consensus        57 ~~~ng~~dgpil-PpP~em~~EEg~~LREWRRqNA~~LeeKEk~EKe~r~qII~eAEeyk~eFYeKR~~~~E~nK~~NRE  135 (143)
                      -++||.+|+-.- ..+... .+||..||+||.++..+|++|+..++.++..++++|...+++||+.|+.+++.+|++||.
T Consensus        77 qesngp~d~yaai~qad~l-eeEPEsIRkWREEq~kRLeekDa~sekkk~E~rekAkKeLddwY~~yneqlEK~ka~NR~  155 (205)
T 3lvh_D           77 QEANGPADGYAAIAQADRL-TQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI  155 (205)
T ss_dssp             --------------CCSTT-TBSTTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             hhcCCCccchhhhcccccc-ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            456665555332 223333 499999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccC
Q 032335          136 REKSTEVS  143 (143)
Q Consensus       136 kEk~fLAs  143 (143)
                      .|+.||++
T Consensus       156 aeeeFlaq  163 (205)
T 3lvh_D          156 ADKAFYQQ  163 (205)
T ss_dssp             STTTSSHH
T ss_pred             HHHHHHhC
Confidence            99999963

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00