Citrus Sinensis ID: 032399

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
Protein Sequence
MIEKRYGRLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAVPGQVPPGQVPSWNPSAQAGPAAYVSASGPFPGQTYPQSPVFAYATAPTPTGSSPLSLTQPGVPPVRPGGASPPGHPPYYVR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHccEEEEccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
miekrygrlkaysdksrdytvqdqtllatqqipsvpaapsvwqshqaapmysgseyatavpgqvppgqvpswnpsaqagpaayvsasgpfpgqtypqspvfayataptptgssplsltqpgvppvrpggasppghppyyvr
Flexible Loop (DISEMBL)
miekrygrlkaysdksrdyTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAVPGQVPPGQVPSWNPSAQAGPAAYVSASGPFPGQTYPQSPVFAYATAPTPTGSSPLSLTQPGVPPvrpggasppghppyyvr
Low Complexity Region (SEG)
MIEKRYGRLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAvpgqvppgqvpSWNPSAQAGPAAYVSASGPFPGQTYPQSPVFAYATAPTPTGSSPLSLTQPGVPPVRPGGASPPGHPPYYVR
Disordered region (IsUnstruct)
*********************************************************************************************************************************************
Disordered Region (DISOPRED)
****R*G*LKAYSDKSRDYTVQDQ*********************************************************************************************************************
Disordered Region (DISEMBL)
MIEKRYGRLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAVPGQVPPGQVPSWNPSAQAGPAAYVSASGPFPGQTYPQSPVFAYATAPTPTGSSPLSLTQPGVPPVRPGGASPPGHPPYYVR
Disordered Region (DISPRO)
MIEKRYGRLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAVPGQVPPGQVPSWNPSAQAGPAAYVSASGPFPGQTYPQSPVFAYATAPTPTGSSPLS*****V*******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIEKRYGRLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAVPGQVPPGQVPSWNPSAQAGPAAYVSASGPFPGQTYPQSPVFAYATAPTPTGSSPLSLTQPGVPPVRPGGASPPGHPPYYVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	141	2.2.26 [Sep-21-2011]
Q9MAC5	399	Polypyrimidine tract-bind	no	no	0.326	0.115	0.5	0.0002

>sp|Q9MAC5|PTBP1_ARATH Polypyrimidine tract-binding protein homolog 1 OS=Arabidopsis thaliana GN=PTB PE=2 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 2/48 (4%)

Query: 8   RLKAYSDKSRDYTVQDQTLLATQQIPSVPAA--PSVWQSHQAAPMYSG 53
            +KA+SDKSRDYT+ D +LL  Q+ P+V  +  P+ WQ+ QA   YSG
Sbjct: 326 NVKAFSDKSRDYTLPDLSLLVAQKGPAVSGSAPPAGWQNPQAQSQYSG 373

Plays a role in pre-mRNA splicing. Binds to the polypyrimidine tract of introns. May promote the binding of U2 snRNP to pre-mRNA.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
118488224	473	unknown [Populus trichocarpa]	0.929	0.276	0.527	1e-29
255584813	483	polypyrimidine tract binding protein, pu	0.943	0.275	0.536	3e-28
224141415	476	predicted protein [Populus trichocarpa]	0.929	0.275	0.526	2e-27
225452859	449	PREDICTED: polypyrimidine tract-binding	0.858	0.269	0.526	1e-23
225452861	420	PREDICTED: polypyrimidine tract-binding	0.858	0.288	0.526	1e-23
356531752	467	PREDICTED: polypyrimidine tract-binding	0.865	0.261	0.473	3e-13
356531748	496	PREDICTED: polypyrimidine tract-binding	0.865	0.245	0.473	3e-13
356531750	505	PREDICTED: polypyrimidine tract-binding	0.865	0.241	0.473	3e-13
357501941	780	Polypyrimidine tract-binding protein-lik	0.815	0.147	0.391	7e-12
334702291	467	polypyrimidine tract-binding protein 7 [	0.773	0.233	0.416	6e-11

>gi|118488224|gb|ABK95931.1| unknown [Populus trichocarpa]

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/148 (52%), Positives = 98/148 (66%), Gaps = 17/148 (11%)

Query: 8   RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYAT--AVPGQVP 65
            +KAYSDKSRDYT+ D +L+A Q  P +  AP++WQ+ QA  MY+G+ YAT  AVP QVP
Sbjct: 326 NVKAYSDKSRDYTIPDASLIAAQA-PGLHTAPTMWQNPQAGSMYTGNNYATTAAVPVQVP 384

Query: 66  PGQVPSWNPSAQAGPAAYVSASGPFPGQTYPQSPVFAYATAPTPTGSSP----------- 114
           PGQVP+W+P+ QAG   Y S  G +PGQTYP  P  AYATA  P GSSP           
Sbjct: 385 PGQVPAWDPTMQAGGQGYASVPGTYPGQTYPTPPASAYATAAIPAGSSPRSHSSPISHSV 444

Query: 115 --LSLTQPGV-PPVRPGGASPPGHPPYY 139
             ++++ PG+   +RP GASPPG PPYY
Sbjct: 445 ASMAMSHPGMQSNLRPSGASPPGQPPYY 472

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584813|ref|XP_002533124.1| polypyrimidine tract binding protein, putative [Ricinus communis] gi|223527087|gb|EEF29269.1| polypyrimidine tract binding protein, putative [Ricinus communis]

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/151 (53%), Positives = 99/151 (65%), Gaps = 18/151 (11%)

Query: 8   RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYAT--AVPGQVP 65
            +KAYSDKSRDYT+ D +LLA  Q+P VP AP++WQ+ QA+PMY  + YA+  AV  QVP
Sbjct: 334 NVKAYSDKSRDYTIPDASLLAAGQVPGVPTAPTMWQNPQASPMYPVNSYASAAAVTAQVP 393

Query: 66  PGQVPSWNPSAQAGPAAYVSA-SGPFPGQTYPQSPVFAYATAPTPTGSSPLS-------- 116
            GQVP+WNPS +AG  AY S   G FPGQ+YP  P   Y +A  P GSSPL+        
Sbjct: 394 AGQVPAWNPSMEAGGPAYPSVPPGTFPGQSYPAPPP-TYVSAAMPVGSSPLTQGSPMSPG 452

Query: 117 -----LTQPGV-PPVRPGGASPPGHPPYYVR 141
                +T PGV   +RPGGASPPG PP+Y R
Sbjct: 453 VGTMPMTHPGVQSNLRPGGASPPGQPPFYGR 483

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141415|ref|XP_002324068.1| predicted protein [Populus trichocarpa] gi|222867070|gb|EEF04201.1| predicted protein [Populus trichocarpa]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/150 (52%), Positives = 94/150 (62%), Gaps = 19/150 (12%)

Query: 8   RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYAT--AVPGQVP 65
            +KA+SDKSRDYT+ D + L T Q P +  AP+ WQ+ QA  MY GS YAT  A P QVP
Sbjct: 330 NVKAFSDKSRDYTIPDASFL-TAQAPGLHTAPTTWQNPQAGSMYLGSNYATTAAAPAQVP 388

Query: 66  PGQVPSWNPSAQAGPAAYVSASGPFPGQTYPQSPVFAYATAPTPTGSSP----------- 114
           PGQV +W+PS QAG   Y S  G +PGQTYP  P  AYA++  P GSSP           
Sbjct: 389 PGQVAAWDPSMQAGGPGYSSVRGMYPGQTYPTPP--AYASSALPPGSSPHSYSSPISPGV 446

Query: 115 --LSLTQPGV-PPVRPGGASPPGHPPYYVR 141
             + +T PGV P +RPGGASPPG  PYY R
Sbjct: 447 ASMGMTHPGVQPNMRPGGASPPGQTPYYGR 476

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452859|ref|XP_002283748.1| PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform 1 [Vitis vinifera] gi|296082938|emb|CBI22239.3| unnamed protein product [Vitis vinifera]

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/133 (52%), Positives = 88/133 (66%), Gaps = 12/133 (9%)

Query: 8   RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAVPGQVPPG 67
            +KA+SD+SRDYT+ D  LLA QQ P  P A +VWQ+ QAAP+Y+G + A A        
Sbjct: 326 NVKAHSDRSRDYTIPDSGLLAVQQAPGHPGATTVWQNPQAAPLYTGHDAAAA-----AAV 380

Query: 68  QVPSWNPSAQAGPAAYVSASGPFPGQTYPQSPVFAYATAPTPTGSSPLSLTQPGVPP-VR 126
           QVPSW+P+ QAG + + SA+  FP Q +  S + AY   P P GSSPL+   P VPP VR
Sbjct: 381 QVPSWDPNMQAGRSTFASAASAFPSQPFASSSISAY---PAPPGSSPLT---PAVPPNVR 434

Query: 127 PGGASPPGHPPYY 139
           PGGASPPG PPY+
Sbjct: 435 PGGASPPGRPPYF 447

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452861|ref|XP_002283752.1| PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform 2 [Vitis vinifera]

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/133 (52%), Positives = 88/133 (66%), Gaps = 12/133 (9%)

Query: 8   RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAVPGQVPPG 67
            +KA+SD+SRDYT+ D  LLA QQ P  P A +VWQ+ QAAP+Y+G + A A        
Sbjct: 297 NVKAHSDRSRDYTIPDSGLLAVQQAPGHPGATTVWQNPQAAPLYTGHDAAAA-----AAV 351

Query: 68  QVPSWNPSAQAGPAAYVSASGPFPGQTYPQSPVFAYATAPTPTGSSPLSLTQPGVPP-VR 126
           QVPSW+P+ QAG + + SA+  FP Q +  S + AY   P P GSSPL+   P VPP VR
Sbjct: 352 QVPSWDPNMQAGRSTFASAASAFPSQPFASSSISAY---PAPPGSSPLT---PAVPPNVR 405

Query: 127 PGGASPPGHPPYY 139
           PGGASPPG PPY+
Sbjct: 406 PGGASPPGRPPYF 418

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531752|ref|XP_003534440.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like isoform 3 [Glycine max]

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/131 (47%), Positives = 75/131 (57%), Gaps = 9/131 (6%)

Query: 8   RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAVPGQVPPG 67
            +KA+SDKSRDYTV D +LLA Q        P+ WQ+ QAA MY GS  A A   QVP G
Sbjct: 297 NVKAFSDKSRDYTVPDPSLLAAQ------GPPTAWQNPQAASMYPGS--APAYHTQVPGG 348

Query: 68  QVPSWNPSAQAGPAAYVSASGPFPGQTYPQSPVFAYA-TAPTPTGSSPLSLTQPGVPPVR 126
           QVPSW+PS QA   +Y SA G FP QT    P+ +YA  +  P  SSP + + P      
Sbjct: 349 QVPSWDPSLQAVRPSYASAPGTFPVQTGAAPPMPSYAPASAMPVASSPHAQSSPMAHNAN 408

Query: 127 PGGASPPGHPP 137
           P G +  G PP
Sbjct: 409 PMGIAQLGVPP 419

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531748|ref|XP_003534438.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like isoform 1 [Glycine max]

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/131 (47%), Positives = 75/131 (57%), Gaps = 9/131 (6%)

Query: 8   RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAVPGQVPPG 67
            +KA+SDKSRDYTV D +LLA Q        P+ WQ+ QAA MY GS  A A   QVP G
Sbjct: 326 NVKAFSDKSRDYTVPDPSLLAAQ------GPPTAWQNPQAASMYPGS--APAYHTQVPGG 377

Query: 68  QVPSWNPSAQAGPAAYVSASGPFPGQTYPQSPVFAYA-TAPTPTGSSPLSLTQPGVPPVR 126
           QVPSW+PS QA   +Y SA G FP QT    P+ +YA  +  P  SSP + + P      
Sbjct: 378 QVPSWDPSLQAVRPSYASAPGTFPVQTGAAPPMPSYAPASAMPVASSPHAQSSPMAHNAN 437

Query: 127 PGGASPPGHPP 137
           P G +  G PP
Sbjct: 438 PMGIAQLGVPP 448

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531750|ref|XP_003534439.1| PREDICTED: polypyrimidine tract-binding protein homolog 1-like isoform 2 [Glycine max]

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/131 (47%), Positives = 75/131 (57%), Gaps = 9/131 (6%)

Query: 8   RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYATAVPGQVPPG 67
            +KA+SDKSRDYTV D +LLA Q        P+ WQ+ QAA MY GS  A A   QVP G
Sbjct: 335 NVKAFSDKSRDYTVPDPSLLAAQ------GPPTAWQNPQAASMYPGS--APAYHTQVPGG 386

Query: 68  QVPSWNPSAQAGPAAYVSASGPFPGQTYPQSPVFAYA-TAPTPTGSSPLSLTQPGVPPVR 126
           QVPSW+PS QA   +Y SA G FP QT    P+ +YA  +  P  SSP + + P      
Sbjct: 387 QVPSWDPSLQAVRPSYASAPGTFPVQTGAAPPMPSYAPASAMPVASSPHAQSSPMAHNAN 446

Query: 127 PGGASPPGHPP 137
           P G +  G PP
Sbjct: 447 PMGIAQLGVPP 457

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501941|ref|XP_003621259.1| Polypyrimidine tract-binding protein-like protein [Medicago truncatula] gi|355496274|gb|AES77477.1| Polypyrimidine tract-binding protein-like protein [Medicago truncatula]

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 70/179 (39%), Positives = 83/179 (46%), Gaps = 64/179 (35%)

Query: 9   LKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMY--SGSEYATAVPG---- 62
           +KA+SDKSRDYTV           P VPA   VWQ+ QAAPMY  +   Y T VPG    
Sbjct: 616 VKAFSDKSRDYTV-----------PLVPAP--VWQNPQAAPMYPTNSPAYQTQVPGGSPA 662

Query: 63  ---QVPPGQVPSWNPSAQAGPAAYVSASGPFPGQT--YPQSPVFAYATAPTPTGSSPLS- 116
              QVP GQVPSW+ +  A    YV   G +PGQT  +P  P  +Y +A  PT SSPL+ 
Sbjct: 663 YQTQVPGGQVPSWDLTQHAVRPGYVPVPGAYPGQTGAFPTMP--SYGSAAMPTASSPLAQ 720

Query: 117 ------------------------------------LTQPGVPP-VRPGGASPPGHPPY 138
                                               + +PG PP VRPGGASP G   Y
Sbjct: 721 SSHPGAPHNVNLQPSGGSTSGPGSSPHMQQNLGAQGMVRPGAPPNVRPGGASPSGQHYY 779

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334702291|gb|AEG89705.1| polypyrimidine tract-binding protein 7 [Solanum tuberosum]

 Score = 72.4 bits (176), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 70/125 (56%), Gaps = 16/125 (12%)

Query: 8   RLKAYSDKSRDYTVQDQTLLATQQIPSVPAAPSVWQSHQAAPMYSGSEYAT--AVPGQVP 65
            ++AYSDKSRDYTV + +LLA QQ  +V A P VW + Q+ P+ S + YAT   VPGQ P
Sbjct: 326 NVQAYSDKSRDYTVPESSLLAMQQASAVHATPPVWHNPQSGPVQSSAGYATTGTVPGQAP 385

Query: 66  PGQVPSWNPSAQAGPAAYVSASGPFPGQTYPQS----------PVFAYATAPTPTGSSPL 115
               P+WNP+ Q G + + SA   +PG +Y             P  +  T    TGS P 
Sbjct: 386 ----PAWNPNLQGGGSTFPSAPTGYPGHSYAPPAPAYATAVHPPGSSQQTNHISTGSRPF 441

Query: 116 SLTQP 120
           S++QP
Sbjct: 442 SVSQP 446

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
TAIR|locus:2102142	399	PTB1 "polypyrimidine tract-bin	0.319	0.112	0.531	2.1e-06
UNIPROTKB|F1SFQ6	159	PRR13 "Uncharacterized protein	0.432	0.383	0.442	3.4e-06
UNIPROTKB|G4NCU1	238	MGG_01025 "Uncharacterized pro	0.460	0.273	0.373	7.4e-05
UNIPROTKB|I3L2N2	730	DVL2 "Segment polarity protein	0.404	0.078	0.35	0.00016
UNIPROTKB|E2R7K2	732	DVL2 "Uncharacterized protein"	0.404	0.077	0.35	0.00016
UNIPROTKB|E1BK34	736	DVL2 "Uncharacterized protein"	0.404	0.077	0.35	0.00017
UNIPROTKB|O14641	736	DVL2 "Segment polarity protein	0.404	0.077	0.35	0.00017
TAIR|locus:2124142	857	AT4G18670 "AT4G18670" [Arabido	0.418	0.068	0.426	0.00025
UNIPROTKB|F1NKK1	893	PDCD6IP "Uncharacterized prote	0.815	0.128	0.283	0.00026
RGD|1307129	139	Prr13 "proline rich 13" [Rattu	0.453	0.460	0.354	0.00045

TAIR|locus:2102142 PTB1 "polypyrimidine tract-binding protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 25/47 (53%), Positives = 33/47 (70%)

Query:     9 LKAYSDKSRDYTVQDQTLLATQQIPSVP--AAPSVWQSHQAAPMYSG 53
             +KA+SDKSRDYT+ D +LL  Q+ P+V   A P+ WQ+ QA   YSG
Sbjct:   327 VKAFSDKSRDYTLPDLSLLVAQKGPAVSGSAPPAGWQNPQAQSQYSG 373

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009846 "pollen germination" evidence=IGI

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

GO:0006417 "regulation of translation" evidence=IEP

GO:0043484 "regulation of RNA splicing" evidence=IDA

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

UNIPROTKB|F1SFQ6 PRR13 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 31/70 (44%), Positives = 34/70 (48%)

Query:    72 WNPSA-QAGPAAYVSASGPFPGQTYPQSPVFAYATAPTPTGSSPLSLTQPGVPPVRPGGA 130
             WNP+A Q GP  Y    G +PG  +P  P    A  P P G  P   T PGVP   P  A
Sbjct:     2 WNPNAGQPGPNPYPPNVG-YPGGCHPTHP--PSANPPFPPGPLP---TPPGVPQGNP--A 53

Query:   131 SPPGHPPYYV 140
              PPG P Y V
Sbjct:    54 FPPGGPCYPV 63

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|G4NCU1 MGG_01025 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 99 (39.9 bits), Expect = 7.4e-05, P = 7.4e-05
 Identities = 25/67 (37%), Positives = 31/67 (46%)

Query:    72 WNPSAQAGPAAYVSASGPFPGQTYPQSPVFAYATAPTPTGSSPLSLTQPGVPPVRPGGA- 130
             +NP+ + GP   V A+ P PG   P  P       P P G+       PG  P+RP G  
Sbjct:   144 YNPAPRPGPPGGVRAAPP-PGMRPPGPPGPPGMRPPFPPGAGVPRAFPPGARPMRPPGMP 202

Query:   131 SPPGHPP 137
              PPG PP
Sbjct:   203 GPPGGPP 209

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|I3L2N2 DVL2 "Segment polarity protein dishevelled homolog DVL-2" [Homo sapiens (taxid:9606)]

 Score = 91 (37.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
 Identities = 21/60 (35%), Positives = 29/60 (48%)

Query:    74 PSAQAGPAAYVSASGPFPGQTYPQSPVFAYATAPTPTGSSPLSLTQPGVPPVRPGGASPP 133
             P+ +A P  +    GP PG   P +P+      P P    P ++  PG PPVR  G+ PP
Sbjct:   650 PNLRAHPGLH--PYGPPPGMALPYNPMMVVMMPPPPPPVPP-AVQPPGAPPVRDLGSVPP 706

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|E2R7K2 DVL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 91 (37.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
 Identities = 21/60 (35%), Positives = 29/60 (48%)

Query:    74 PSAQAGPAAYVSASGPFPGQTYPQSPVFAYATAPTPTGSSPLSLTQPGVPPVRPGGASPP 133
             P+ +A P  +    GP PG   P +P+      P P    P ++  PG PPVR  G+ PP
Sbjct:   652 PNLRAHPGLH--PYGPPPGMALPYNPMMVVMMPPPPPPVPP-AVQPPGAPPVRDLGSVPP 708

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

UNIPROTKB|E1BK34 DVL2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 91 (37.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
 Identities = 21/60 (35%), Positives = 29/60 (48%)

Query:    74 PSAQAGPAAYVSASGPFPGQTYPQSPVFAYATAPTPTGSSPLSLTQPGVPPVRPGGASPP 133
             P+ +A P  +    GP PG   P +P+      P P    P ++  PG PPVR  G+ PP
Sbjct:   656 PNLRAHPGLH--PYGPPPGMALPYNPMMVVMMPPPPPPVPP-AVQPPGAPPVRDLGSVPP 712

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0090179 "planar cell polarity pathway involved in neural tube closure" evidence=IEA

GO:0090103 "cochlea morphogenesis" evidence=IEA

GO:0061098 "positive regulation of protein tyrosine kinase activity" evidence=IEA

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0044340 "canonical Wnt receptor signaling pathway involved in regulation of cell proliferation" evidence=IEA

GO:0043621 "protein self-association" evidence=IEA

GO:0043507 "positive regulation of JUN kinase activity" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0034613 "cellular protein localization" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=IEA

GO:0022007 "convergent extension involved in neural plate elongation" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0007379 "segment specification" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005109 "frizzled binding" evidence=IEA

GO:0003151 "outflow tract morphogenesis" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

UNIPROTKB|O14641 DVL2 "Segment polarity protein dishevelled homolog DVL-2" [Homo sapiens (taxid:9606)]

 Score = 91 (37.1 bits), Expect = 0.00017, Sum P(2) = 0.00017
 Identities = 21/60 (35%), Positives = 29/60 (48%)

Query:    74 PSAQAGPAAYVSASGPFPGQTYPQSPVFAYATAPTPTGSSPLSLTQPGVPPVRPGGASPP 133
             P+ +A P  +    GP PG   P +P+      P P    P ++  PG PPVR  G+ PP
Sbjct:   656 PNLRAHPGLH--PYGPPPGMALPYNPMMVVMMPPPPPPVPP-AVQPPGAPPVRDLGSVPP 712

GO:0004871 "signal transducer activity" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0022007 "convergent extension involved in neural plate elongation" evidence=IEA

GO:0034613 "cellular protein localization" evidence=IEA

GO:0043621 "protein self-association" evidence=IEA

GO:0061098 "positive regulation of protein tyrosine kinase activity" evidence=IEA

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0003007 "heart morphogenesis" evidence=IBA

GO:0005886 "plasma membrane" evidence=IBA

GO:0005938 "cell cortex" evidence=IBA

GO:0021535 "cell migration in hindbrain" evidence=IBA

GO:0030136 "clathrin-coated vesicle" evidence=IBA

GO:0045177 "apical part of cell" evidence=IBA

GO:0060026 "convergent extension" evidence=IBA

GO:0090103 "cochlea morphogenesis" evidence=IBA

GO:0090179 "planar cell polarity pathway involved in neural tube closure" evidence=IBA

GO:0005515 "protein binding" evidence=IPI

GO:0005109 "frizzled binding" evidence=IPI

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IDA

GO:0005634 "nucleus" evidence=ISS

GO:0016055 "Wnt receptor signaling pathway" evidence=IGI

GO:0005829 "cytosol" evidence=TAS

GO:0035329 "hippo signaling cascade" evidence=TAS

GO:0042802 "identical protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0001843 "neural tube closure" evidence=ISS

GO:0007379 "segment specification" evidence=ISS

GO:0007507 "heart development" evidence=ISS

GO:0060071 "Wnt receptor signaling pathway, planar cell polarity pathway" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IDA

GO:0043507 "positive regulation of JUN kinase activity" evidence=IMP;IDA

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0001934 "positive regulation of protein phosphorylation" evidence=IMP

GO:0035567 "non-canonical Wnt receptor signaling pathway" evidence=IMP

GO:0044340 "canonical Wnt receptor signaling pathway involved in regulation of cell proliferation" evidence=IDA

GO:0003151 "outflow tract morphogenesis" evidence=ISS

TAIR|locus:2124142 AT4G18670 "AT4G18670" [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 0.00025, P = 0.00025
 Identities = 29/68 (42%), Positives = 32/68 (47%)

Query:    74 PSAQAGPAAY-VSASGPFPGQTYPQSPVFAYATAPTPTGSSPLSLTQP---GVPPVRPGG 129
             PS    P +   S + P PG + P SP     T PTP GS P S T P   G PP  P  
Sbjct:   459 PSTTPSPGSPPTSPTTPTPGGSPPSSP-----TTPTPGGSPPSSPTTPTPGGSPPSSPTT 513

Query:   130 ASPPGHPP 137
              SP G PP
Sbjct:   514 PSPGGSPP 521

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|F1NKK1 PDCD6IP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 102 (41.0 bits), Expect = 0.00026, P = 0.00026
 Identities = 34/120 (28%), Positives = 50/120 (41%)

Query:    20 TVQDQTLLATQQ-IPSVPAAPSV-WQSHQAAPMYSGSEYATAXXXXXXXXXXXSWNPSAQ 77
             T +D+ L   QQ I   P+APS+   ++Q  P   GS+ A +              P   
Sbjct:   705 TERDELLKDLQQSIAREPSAPSIPLPTYQTTPA-GGSKPAASSTPTPAPRTMVGTKPQPP 763

Query:    78 AGPAA-YVSASGPFPGQTYPQSPVFAYATAPTPTGSSPLSLTQPGVPPVRPGGASPPGHP 136
             A P    +SA+   P  + P     A  +APTP   +P + T P  P   PG ++    P
Sbjct:   764 ARPPPPVISAASSSPSASAPSGTAAAPPSAPTPAAPTPAAPT-PAAPTPAPGASASSTAP 822

GO:0005829 "cytosol" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

RGD|1307129 Prr13 "proline rich 13" [Rattus norvegicus (taxid:10116)]

 Score = 91 (37.1 bits), Expect = 0.00045, P = 0.00045
 Identities = 28/79 (35%), Positives = 33/79 (41%)

Query:    72 WNPSAQAGPAAY----VSASGPFPGQTYPQSPVFAYATAPT--PTGSS-------PLSLT 118
             WNPSA  GP  Y    V   G  P     Q+P F     P   P G+        P  + 
Sbjct:     2 WNPSA--GPNPYPPQVVCPGGSNPACPPSQNPAFPPGPCPPGIPQGNPAFPPCRPPYPVP 59

Query:   119 QPGVPPVRPGGASPPGHPP 137
             QPG P  +P G  PP +PP
Sbjct:    60 QPGCPGYQPSGPYPPPYPP 78

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020992001 SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (261 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	141
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	0.003

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 2/82 (2%)

Query: 58  TAVPGQVPPGQV-PSWNPSAQAGPAAYVSASGPFPGQTYPQSPVFAYATAPTPTGSSPLS 116
            A  G+ P   + P +   A A   +  +A+ P P Q+   +   A  +A  P G+ P  
Sbjct: 368 DASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTV 427

Query: 117 LTQPGVP-PVRPGGASPPGHPP 137
              P    PV P   +P    P
Sbjct: 428 SVDPPAAVPVNPPSTAPQAVRP 449

Length = 614

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	141
KOG1190	492	consensus Polypyrimidine tract-binding protein [RN	96.96
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	91.11

>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]

Probab=96.96  E-value=0.00028  Score=64.04  Aligned_cols=18  Identities=50%  Similarity=0.510  Sum_probs=16.6

Q ss_pred             ccceeeccCCCcccccCc
Q 032399            6 YGRLKAYSDKSRDYTVQD   23 (141)
Q Consensus         6 ~~NVKa~~DrSRDYTip~   23 (141)
                      .+|||-+||||||||-|+
T Consensus       229 ~LnvKynndkSRDyTnp~  246 (492)
T KOG1190|consen  229 DLNVKYNNDKSRDYTNPD  246 (492)
T ss_pred             cceeeccccccccccCCC
Confidence            589999999999999877

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=91.11  E-value=0.11  Score=46.02  Aligned_cols=20  Identities=40%  Similarity=0.395  Sum_probs=17.6

Q ss_pred             cccceeeccCCCcccccCch
Q 032399            5 RYGRLKAYSDKSRDYTVQDQ   24 (141)
Q Consensus         5 ~~~NVKa~~DrSRDYTip~~   24 (141)
                      ..+|||-++|||||||.|+-
T Consensus       174 ~~l~v~~~~~~s~dyt~~~l  193 (481)
T TIGR01649       174 TRLNVKYNDDDSRDYTNPDL  193 (481)
T ss_pred             CCceeEecccCCCCCcCCCC
Confidence            46999999999999999763

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	141
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-06

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.0 bits (103), Expect = 5e-06
 Identities = 19/95 (20%), Positives = 26/95 (27%), Gaps = 1/95 (1%)

Query: 46  QAAPMYSGSEYATAVPGQVPPGQVPSWNPSAQAGPAAYVSASGPFPGQTYPQSP-VFAYA 104
           QA   Y  +      P Q  P Q P+    +          + P  GQ    +P      
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70

Query: 105 TAPTPTGSSPLSLTQPGVPPVRPGGASPPGHPPYY 139
                  +S   +    VP V P     P  P   
Sbjct: 71  QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQM 105

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00