Citrus Sinensis ID: 032439

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Protein Sequence
MKMALNCSSSTCITFSYNKIRNPTNTSSLTLNTGFFHLAQKSPFRVSAATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLL
Secondary Structure (PSIPRED)
ccccccccccEEEEEEEEccccccccccccccccccccccccccEEEccccccEEEEEEEEEEEEEEEcccccHHHHHccccEEEEccccccEEEEcccEEEEEEccEEEEEEEEEEEEEEEEEEEcccEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccEEEEEcccccccccccEEEEccccccccccccEEEEEEccccccEEEEEcccEEEEccccccHHHHHccccccEEEEcccHEEEcccccEEEEEEEEEEEEEEEEEEEEEEEEEcccccEEEEEEcEcc
Coil and Loop (DISEMBL)
mkmalncssstcitfsynkirnptntssltlntgffhlaqkspfrvsaatspAKARFVARRKESVRVRQLQRPlieymslpasqysvldaeriervddntfrcyvYRFKFFAFEICPVLLVRVeeqpngccikllsckll
Flexible Loop (DISEMBL)
mkmalncssstCITFSYNKIRNPTNTSSLTLNTGFFHLAQKSPFRVSAATSPAKarfvarrkesvrvrqlqrplieymslpasqysvldaERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEqpngccikllsckll
Low Complexity Region (SEG)
MKMALNCSSSTCITFSYNKIRNPtntssltlntGFFHLAQKSPFRVSAATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLL
Disordered region (IsUnstruct)
*********STCITFSYNKIRNPTNTSSLTLNTGFFHLAQKSPFR***********FV******VRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCK**
Disordered Region (DISOPRED)
*********STCITFSY******************************************************RPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLL
Disordered Region (DISEMBL)
********SSTCITFSYNKIRNPTNTSSLTLNTGFFHLAQKSP************************RQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLL
Disordered Region (DISPRO)
*KMALNCSSSTCITFSYNKIRNPTNTSSLTLNTGFFHLAQKSPFRVSAATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKMALNCSSSTCITFSYNKIRNPTNTSSLTLNTGFFHLAQKSPFRVSAATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
255583732	245	conserved hypothetical protein [Ricinus	0.978	0.559	0.666	2e-45
30680516	255	uncharacterized protein [Arabidopsis tha	0.685	0.376	0.865	4e-43
7406448	285	putative protein [Arabidopsis thaliana]	0.685	0.336	0.865	6e-43
225448890	239	PREDICTED: uncharacterized protein SYNPC	0.842	0.493	0.705	2e-42
147781363	178	hypothetical protein VITISV_029052 [Viti	0.85	0.668	0.7	2e-42
297806421	252	hypothetical protein ARALYDRAFT_487226 [	0.971	0.539	0.630	3e-42
356500349	228	PREDICTED: uncharacterized protein LOC10	0.664	0.407	0.860	2e-40
356534738	231	PREDICTED: uncharacterized protein LOC10	0.664	0.402	0.838	2e-39
388515479	226	unknown [Medicago truncatula]	0.807	0.5	0.726	3e-39
357439939	227	(RAP Annotation release2) Galactose-bind	0.728	0.449	0.761	7e-39

>gi|255583732|ref|XP_002532619.1| conserved hypothetical protein [Ricinus communis] gi|223527639|gb|EEF29750.1| conserved hypothetical protein [Ricinus communis]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 94/141 (66%), Positives = 111/141 (78%), Gaps = 4/141 (2%)

Query: 3   MALNCSSSTCITFSYNKIRNPTNTS---SLTLNTGFFHLAQKSPF-RVSAATSPAKARFV 58
           MA+NCS+ +  T S + +R  + +    SL  N+     + + PF R+ +A +  KARF+
Sbjct: 1   MAINCSTCSNSTVSLSSVRLESRSPRIFSLNFNSSQNGSSPRKPFLRIVSANATPKARFI 60

Query: 59  ARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVYRFKFFAFEICPV 118
           ARRKESV VRQL RPLIEYMSLPASQYSVLDAERIER+DDNTFRCYVYRF FFAFE+CPV
Sbjct: 61  ARRKESVWVRQLGRPLIEYMSLPASQYSVLDAERIERIDDNTFRCYVYRFNFFAFEVCPV 120

Query: 119 LLVRVEEQPNGCCIKLLSCKL 139
           LLV+VEEQPNGCCIKLLSCKL
Sbjct: 121 LLVKVEEQPNGCCIKLLSCKL 141

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680516|ref|NP_196064.2| uncharacterized protein [Arabidopsis thaliana] gi|63147366|gb|AAY34156.1| At5g04440 [Arabidopsis thaliana] gi|87116598|gb|ABD19663.1| At5g04440 [Arabidopsis thaliana] gi|332003362|gb|AED90745.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  179 bits (454), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 84/97 (86%), Positives = 92/97 (94%), Gaps = 1/97 (1%)

Query: 43  PFRVSAATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFR 102
           P RVS++++P KARF+AR+K+SV VRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFR
Sbjct: 56  PIRVSSSSTP-KARFIARQKQSVSVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFR 114

Query: 103 CYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKL 139
           CYVY FKFF FE+CPVLLVRVEEQPNGCCIKLLSCKL
Sbjct: 115 CYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKL 151

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7406448|emb|CAB85550.1| putative protein [Arabidopsis thaliana]

 Score =  178 bits (452), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 84/97 (86%), Positives = 92/97 (94%), Gaps = 1/97 (1%)

Query: 43  PFRVSAATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFR 102
           P RVS++++P KARF+AR+K+SV VRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFR
Sbjct: 56  PIRVSSSSTP-KARFIARQKQSVSVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFR 114

Query: 103 CYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKL 139
           CYVY FKFF FE+CPVLLVRVEEQPNGCCIKLLSCKL
Sbjct: 115 CYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKL 151

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448890|ref|XP_002270872.1| PREDICTED: uncharacterized protein SYNPCC7002_A1590 [Vitis vinifera] gi|296085939|emb|CBI31380.3| unnamed protein product [Vitis vinifera]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/119 (70%), Positives = 103/119 (86%), Gaps = 1/119 (0%)

Query: 21  RNPTNTSSLTLNTGFFHLAQKSPFRVSAATSPAKARFVARRKESVRVRQLQRPLIEYMSL 80
           +NP ++ ++      ++ + K  FR+SA  +P KARFVARR+ESV V+QL+RPL+EYMSL
Sbjct: 18  QNPRSSLNVKHILFSYNESSKPSFRISADLAP-KARFVARRRESVSVKQLERPLVEYMSL 76

Query: 81  PASQYSVLDAERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKL 139
           PASQYSVLDAERIERVDDNTFRCYVYRF+FFAFE+CPVL+V+VEEQPNGCCI+LLSCKL
Sbjct: 77  PASQYSVLDAERIERVDDNTFRCYVYRFRFFAFEVCPVLMVKVEEQPNGCCIRLLSCKL 135

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147781363|emb|CAN67223.1| hypothetical protein VITISV_029052 [Vitis vinifera]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/120 (70%), Positives = 104/120 (86%), Gaps = 1/120 (0%)

Query: 21  RNPTNTSSLTLNTGFFHLAQKSPFRVSAATSPAKARFVARRKESVRVRQLQRPLIEYMSL 80
           +NP ++ ++      ++ + K  FR+SA  +P KARFVARR+ESV V+QL+RPL+EYMSL
Sbjct: 18  QNPRSSLNVKHILFSYNESSKPSFRISADLAP-KARFVARRRESVSVKQLERPLVEYMSL 76

Query: 81  PASQYSVLDAERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLL 140
           PASQYSVLDAERIERVDDNTFRCYVYRF+FFAFE+CPVL+V+VEEQPNGCCI+LLSCK+L
Sbjct: 77  PASQYSVLDAERIERVDDNTFRCYVYRFRFFAFEVCPVLMVKVEEQPNGCCIRLLSCKVL 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806421|ref|XP_002871094.1| hypothetical protein ARALYDRAFT_487226 [Arabidopsis lyrata subsp. lyrata] gi|297316931|gb|EFH47353.1| hypothetical protein ARALYDRAFT_487226 [Arabidopsis lyrata subsp. lyrata]

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 94/149 (63%), Positives = 116/149 (77%), Gaps = 13/149 (8%)

Query: 3   MALNCSSS--TCITFSYNKI----RNPTNTSSLTLNTGFFHLAQKS------PFRVSAAT 50
           MAL+ ++   T ++FS  K     RNP+ + +++ ++ F    + S      P RVS+++
Sbjct: 1   MALSSATLRLTSLSFSAKKTNRNPRNPSLSFTISSSSSFDEPPKPSLASSTPPIRVSSSS 60

Query: 51  SPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVYRFKF 110
           +P KARF+AR+K+S+ VRQLQRPLIEYMSLPASQYSVLDAERI RVDDNTFRCYVY FKF
Sbjct: 61  TP-KARFIARQKQSISVRQLQRPLIEYMSLPASQYSVLDAERIVRVDDNTFRCYVYTFKF 119

Query: 111 FAFEICPVLLVRVEEQPNGCCIKLLSCKL 139
           F FE+CPVLLVRVEEQPNGCCIKLLSCKL
Sbjct: 120 FNFEVCPVLLVRVEEQPNGCCIKLLSCKL 148

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500349|ref|XP_003518995.1| PREDICTED: uncharacterized protein LOC100789119 [Glycine max]

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/93 (86%), Positives = 87/93 (93%)

Query: 47  SAATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVY 106
           ++AT   KARFVARRKESV VRQLQRPLIEYM LPASQYSVLDAERIERV++NTFRCYVY
Sbjct: 32  ASATPSQKARFVARRKESVSVRQLQRPLIEYMRLPASQYSVLDAERIERVNENTFRCYVY 91

Query: 107 RFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKL 139
           RFKFF FE+CPVLLV+VEEQP+GCCIKLLSCKL
Sbjct: 92  RFKFFNFEVCPVLLVKVEEQPDGCCIKLLSCKL 124

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534738|ref|XP_003535909.1| PREDICTED: uncharacterized protein LOC100797206 [Glycine max]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/93 (83%), Positives = 86/93 (92%)

Query: 47  SAATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVY 106
           ++AT   KARFVARRKES+ VRQLQRPLIEYM LPASQYSVLDAERIERV++NTFRCYVY
Sbjct: 35  ASATPSQKARFVARRKESLSVRQLQRPLIEYMRLPASQYSVLDAERIERVNENTFRCYVY 94

Query: 107 RFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKL 139
           RFKFF  E+CPVLLV+VEEQP+GCCIKLLSCKL
Sbjct: 95  RFKFFNLEVCPVLLVKVEEQPDGCCIKLLSCKL 127

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515479|gb|AFK45801.1| unknown [Medicago truncatula]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 85/117 (72%), Positives = 97/117 (82%), Gaps = 4/117 (3%)

Query: 26  TSSLTLNTGFFH-LAQKSPFRVSAATSPA--KARFVARRKESVRVRQLQRPLIEYMSLPA 82
           +S L L T   H L Q+ P  +++AT P+  KARFVARRKESV V+QLQRPLIEYM LPA
Sbjct: 7   SSILVLPTSRCHQLKQRLPL-LASATPPSTHKARFVARRKESVSVQQLQRPLIEYMRLPA 65

Query: 83  SQYSVLDAERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKL 139
           SQYSVLDAERIERV ++TFRCYVY  KFF FE+CPVLLV+VE+QPNGCCIKLLSCKL
Sbjct: 66  SQYSVLDAERIERVSEDTFRCYVYTIKFFTFEVCPVLLVKVEQQPNGCCIKLLSCKL 122

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439939|ref|XP_003590247.1| (RAP Annotation release2) Galactose-binding like domain containing protein [Medicago truncatula] gi|355479295|gb|AES60498.1| (RAP Annotation release2) Galactose-binding like domain containing protein [Medicago truncatula]

 Score =  165 bits (417), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 80/105 (76%), Positives = 91/105 (86%), Gaps = 3/105 (2%)

Query: 37  HLAQKSPFRVSAATSPA--KARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIE 94
            L Q+ P  +++AT P+  KARFVARRKESV V+QLQRPLIEYM LPASQYSVLDAERIE
Sbjct: 19  QLKQRLPL-LASATPPSTHKARFVARRKESVSVQQLQRPLIEYMRLPASQYSVLDAERIE 77

Query: 95  RVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKL 139
           RV ++TFRCYVY  KFF FE+CPVLLV+VE+QPNGCCIKLLSCKL
Sbjct: 78  RVSEDTFRCYVYTIKFFTFEVCPVLLVKVEQQPNGCCIKLLSCKL 122

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
TAIR|locus:2184377	255	AT5G04440 "AT5G04440" [Arabido	0.692	0.380	0.867	5.2e-42
TAIR|locus:1005716370	274	AT4G31115 [Arabidopsis thalian	0.678	0.346	0.300	2.2e-08

TAIR|locus:2184377 AT5G04440 "AT5G04440" [Arabidopsis thaliana (taxid:3702)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 85/98 (86%), Positives = 93/98 (94%)

Query:    42 SPFRVSAATSPAKARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTF 101
             SP RVS++++P KARF+AR+K+SV VRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTF
Sbjct:    55 SPIRVSSSSTP-KARFIARQKQSVSVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTF 113

Query:   102 RCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKL 139
             RCYVY FKFF FE+CPVLLVRVEEQPNGCCIKLLSCKL
Sbjct:   114 RCYVYTFKFFNFEVCPVLLVRVEEQPNGCCIKLLSCKL 151

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:1005716370 AT4G31115 [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 31/103 (30%), Positives = 58/103 (56%)

Query:    45 RVSAATSPAKARFVARRKESVRVR---QLQRPLIEYMSLPASQYSVLDAERIER---VDD 98
             R    +S  KA   A RK+ +++    + +    E++  P+   +V++A+ ++    VDD
Sbjct:    72 RAMVISSLKKANISASRKQRIKLEINGEKELTFSEFLKHPSGMEAVINAKALQSYHLVDD 131

Query:    99 N--TFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKL 139
             +  T+RC + + +  +FE+ PVL++RV      C ++LLSCKL
Sbjct:   132 SDDTYRCTLPKVQLMSFEVYPVLVLRVTPTQEDCTVELLSCKL 174


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.138   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      140       130   0.00091  102 3  11 22  0.42    30
                                                     29  0.42    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  568 (60 KB)
  Total size of DFA:  126 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.20u 0.13s 12.33t   Elapsed:  00:00:00
  Total cpu time:  12.20u 0.13s 12.33t   Elapsed:  00:00:00
  Start:  Sat May 11 05:16:43 2013   End:  Sat May 11 05:16:43 2013

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	140
pfam09366	170	pfam09366, DUF1997, Protein of unknown function (D	5e-29

>gnl|CDD|117908 pfam09366, DUF1997, Protein of unknown function (DUF1997)

 Score =  103 bits (259), Expect = 5e-29
 Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 57  FVARRKESVRVRQLQRPLIEYMSLPASQYSVL-DAERIERVDDNTFRCYVYRFKFFAFEI 115
           F A +   + +     PL EY+  P   +S L D  ++ER+ D  +R  V  F FF FE+
Sbjct: 1   FSASQSLDLPLPAPAEPLAEYLRQPQRVFSALLDPMKVERLGDGRYRLTVRPFGFFGFEV 60

Query: 116 CPVLLVRVEEQPNGCCIKLLSCKL 139
            PV+++RVE + +G  I+LL C+L
Sbjct: 61  EPVVVLRVEPEDDGLTIELLDCEL 84

This family of proteins are functionally uncharacterized. Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	140
PF09366	158	DUF1997: Protein of unknown function (DUF1997); In	99.82
PF06240	140	COXG: Carbon monoxide dehydrogenase subunit G (Cox	88.08

>PF09366 DUF1997: Protein of unknown function (DUF1997); InterPro: IPR018971 This family of proteins are functionally uncharacterised

Probab=99.82  E-value=1.8e-20  Score=143.49  Aligned_cols=68  Identities=43%  Similarity=0.710  Sum_probs=65.3

Q ss_pred             cchhhhhcCcce-eeeecCccceeEecCCeEEEEeeeeeEEEEEEceEEEEEEEEcCCceEEEEeeeee
Q 032439           72 RPLIEYMSLPAS-QYSVLDAERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKL  139 (140)
Q Consensus        72 ~~L~eYLrqPa~-vyALLDp~~lerLgd~tFR~~v~~L~ff~leV~PVVdLrV~~~~~~c~v~~lsc~L  139 (140)
                      .+|++||++|++ +++++|++++|+||||+|||+|++++||+|+|+|+|+|+||+++++|.+++++|+|
T Consensus         2 ~~l~~YL~~~~r~~~~~~d~~~ie~l~~~~yr~~~~~~~~~~~~v~P~v~l~v~~~~~~~~i~~~~~~l   70 (158)
T PF09366_consen    2 APLAEYLSDPQRWFSALFDPMRIEPLGDNTYRLKMRPFQFFGFEVEPVVDLRVWPQDDGLTIRSLDCEL   70 (158)
T ss_pred             CchHHHHhCchhHHHHhcCHHHcEEcCCCeEEEEEcCccEEEEEEEEEEEEEEEEcCCCeEEEEEEEEE
Confidence            579999999998 77777999999999999999999999999999999999999999999999999997

>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster

Probab=88.08  E-value=1.6  Score=32.17  Aligned_cols=69  Identities=14%  Similarity=0.193  Sum_probs=48.5

Q ss_pred             EeeeeccCcchhhhhcCcceeeeecCc-cceeEecCCeEEEEee-eeeEEEEEEceEEEEEEEEcCCceEEE
Q 032439           64 SVRVRQLQRPLIEYMSLPASQYSVLDA-ERIERVDDNTFRCYVY-RFKFFAFEICPVLLVRVEEQPNGCCIK  133 (140)
Q Consensus        64 ~i~V~e~~~~L~eYLrqPa~vyALLDp-~~lerLgd~tFR~~v~-~L~ff~leV~PVVdLrV~~~~~~c~v~  133 (140)
                      +..|+-....+-+||.+|+.+-+.+.. +.+|.++ +.|+.++. ++.++...+.=.+.+.=...++..+++
T Consensus         2 s~~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~-~~~~~~~~v~vG~i~~~~~g~~~~~~~~~~~~~~~~   72 (140)
T PF06240_consen    2 SFEVPAPPEKVWAFLSDPENLARCIPGVESIEKVG-DEYKGKVKVKVGPIKGTFDGEVRITEIDPPESYTLE   72 (140)
T ss_dssp             EEEECS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC-TEEEEEEEEESCCCEEEEEEEEEEEEEETTTEEEEE
T ss_pred             cEEecCCHHHHHHHhcCHHHHHhhCCCcEEeeecC-cEEEEEEEEEeccEEEEEEEEEEEEEcCCCcceEee
Confidence            345666667889999999986666655 7899999 99999988 677777777666666655555554444

The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00