Citrus Sinensis ID: 032628

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
Protein Sequence
MWKPMNEAQLLKAKTKAAMASSSLISSSLLPTKFLTIHRQSQQLSLFNNHSSKIDTASKRLPTFRVQAAKIPSGVDLPRVQPKFQAPFLGFTKTAEIWNSRACMIGIVFTFIVELILNKGILQVIGVEVGKGLDLPL
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEcccccccccccccccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHccccccHHHcccccccEEcccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEccccccccc
Coil and Loop (DISEMBL)
MWKPMNEAQLLKAKTKAAMASsslisssllptkfLTIHRQSQQLSlfnnhsskidtaskrlptfrvqaakipsgvdlprvqpkfqapflgftKTAEIWNSRACMIGIVFTFIVELILNKGILQVIGVEvgkgldlpl
Flexible Loop (DISEMBL)
MWKPMNEAQLLKAKTKAAMASSSLISSSLLPTKFLTIHRQSQQLSLFNNHSSKIDTASKRLPTFRVQAakipsgvdlprvqPKFQAPFLGFTKTAEIWNSRACMIGIVFTFIVELILNKGILQVIgvevgkgldlpl
Low Complexity Region (SEG)
MWKPMNEaqllkaktkaamassslisssllPTKFLTIHRQSQQLSLFNNHSSKIDTASKRLPTFRVQAAKIPSGVDLPRVQPKFQAPFLGFTKTAEIWNSRACMIGIVFTFIVELILNKGILQVIGVEVGKGLDLPL
Disordered region (IsUnstruct)
******************************PTKFLTIH************************TFRVQAAKIPSGVDLPRVQPKFQAPFLGFTKTAEIWNSRACMIGIVFTFIVELILNKGILQVIGVEVGKG*****
Disordered Region (DISOPRED)
*******AQLLKAKTKA*****************************************************************KFQAPFLGFTKTAEIWNSRACMIGIVFTFIVELILNKGILQVIGVEVGKGLDLP*
Disordered Region (DISEMBL)
MWKPMNEAQ**************LISSSLLPTKFLTIHRQSQQLSLFNNHSSKIDTASKRLPTFRVQAAKIPSGVDLPRVQPKFQAPFLGFTKTAEIWNSRACMIGIVFTFIVELILNKGILQVIGVEVGKGLDLPL
Disordered Region (DISPRO)
*WKPMNEAQLLKAKTKAAMASSSLISSSLLPTKFLTIHRQSQQLSLFNNHSS*IDTASKRLPTFRVQAAKIPSGVDLPRVQPKFQAPFLGFTKTAEIWNSRACMIGIVFTFIVELILNKGILQVIGVEVGKGLDLPL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWKPMNEAQLLKAKTKAAMASSSLISSSLLPTKFLTIHRQSQQLSLFNNHSSKIDTASKRLPTFRVQAAKIPSGVDLPRVQPKFQAPFLGFTKTAEIWNSRACMIGIVFTFIVELILNKGILQVIGVEVGKGLDLPL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	137	2.2.26 [Sep-21-2011]
Q02060	274	Photosystem II 22 kDa pro	N/A	no	0.503	0.251	0.357	8e-05
Q9XF91	265	Photosystem II 22 kDa pro	no	no	0.503	0.260	0.357	0.0004

>sp|Q02060|PSBS_SPIOL Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 62  PTFRVQAAKIPSGVDL-PRVQPKFQAPFLGFTKTAEIWNSRACMIGIVFTFIVELILNKG 120
           PT  ++ A IP G D+   +  K + P  GFTK+ E++  R   +G  F+ I E+I  KG
Sbjct: 168 PTTGLEKAVIPPGKDVRSALGLKTKGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKG 227

Query: 121 ILQVIGVEVG 130
            L  + +E G
Sbjct: 228 ALAQLNIETG 237

Seems to be involved in non-photochemical quenching, a process maintains the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules, thereby protecting the plant against photo-oxidative damage.
Spinacia oleracea (taxid: 3562)

>sp|Q9XF91|PSBS_ARATH Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 62  PTFRVQAAKIPSGVDL-PRVQPKFQAPFLGFTKTAEIWNSRACMIGIVFTFIVELILNKG 120
           P   ++ A IP G ++   +  K Q P  GFTK  E++  R   +GI F+ I E+I  KG
Sbjct: 159 PPTGLEKAVIPPGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKG 218

Query: 121 ILQVIGVEVG 130
            L  + +E G
Sbjct: 219 ALAQLNIETG 228

Seems to be involved in non-photochemical quenching, a process maintains the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules, thereby protecting the plant against photo-oxidative damage.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
255581494	115	OHP, putative [Ricinus communis] gi|2235	0.817	0.973	0.716	4e-37
449440036	120	PREDICTED: uncharacterized protein LOC10	0.868	0.991	0.658	9e-36
224090769	119	HLIP/One helix protein [Populus trichoca	0.759	0.873	0.660	4e-35
225440430	121	PREDICTED: uncharacterized protein LOC10	0.861	0.975	0.655	5e-35
30385425	116	one helix protein [Ipomoea nil]	0.715	0.844	0.642	2e-30
20562915	110	one helix protein [Deschampsia antarctic	0.605	0.754	0.686	1e-28
388514033	112	unknown [Lotus japonicus]	0.708	0.866	0.633	1e-28
242047418	111	hypothetical protein SORBIDRAFT_02g00295	0.547	0.675	0.786	1e-28
357153188	110	PREDICTED: uncharacterized protein LOC10	0.715	0.890	0.612	2e-28
388491018	112	unknown [Lotus japonicus]	0.540	0.660	0.8	3e-28

>gi|255581494|ref|XP_002531553.1| OHP, putative [Ricinus communis] gi|223528814|gb|EEF30819.1| OHP, putative [Ricinus communis]

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 81/113 (71%), Positives = 95/113 (84%), Gaps = 1/113 (0%)

Query: 25  ISSSLLPTKFLTIHRQSQQLSLFNNHSSKIDTASKRLPTFRVQAAKIPSGVDLPRVQPKF 84
           +SSSLL TK LTI  Q+QQL LF N S++I    K+  +  V+AAK+P GV+LP+VQPKF
Sbjct: 4   VSSSLLATKSLTIQPQNQQLLLFKN-SAQIRIIPKKPSSLTVRAAKLPPGVELPKVQPKF 62

Query: 85  QAPFLGFTKTAEIWNSRACMIGIVFTFIVELILNKGILQVIGVEVGKGLDLPL 137
            APFLGFT+TAEIWNSRACMIG++ TFIVELILNKGILQVIGV+VGKGLDLPL
Sbjct: 63  VAPFLGFTRTAEIWNSRACMIGLIGTFIVELILNKGILQVIGVDVGKGLDLPL 115

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440036|ref|XP_004137791.1| PREDICTED: uncharacterized protein LOC101209600 [Cucumis sativus] gi|449483401|ref|XP_004156580.1| PREDICTED: uncharacterized protein LOC101227641 [Cucumis sativus]

 Score =  154 bits (390), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 79/120 (65%), Positives = 95/120 (79%), Gaps = 1/120 (0%)

Query: 19  MASSSLISSSLLPTKFLTIHRQSQQLSLFNNHSSKIDTASKRLPTFRVQAA-KIPSGVDL 77
           MASSS+I SSL P + LT + Q  +  LF    S    +S+   +FR+QAA K P+GV+L
Sbjct: 1   MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVEL 60

Query: 78  PRVQPKFQAPFLGFTKTAEIWNSRACMIGIVFTFIVELILNKGILQVIGVEVGKGLDLPL 137
           P+V+PKFQAPFLGFTKTAEIWNSRACMIG++  F+VELILNKGILQVIGV+VGKGLDLPL
Sbjct: 61  PKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090769|ref|XP_002309074.1| HLIP/One helix protein [Populus trichocarpa] gi|222855050|gb|EEE92597.1| HLIP/One helix protein [Populus trichocarpa]

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 70/106 (66%), Positives = 92/106 (86%), Gaps = 2/106 (1%)

Query: 32  TKFLTIHRQSQQLSLFNNHSSKIDTASKRLPTFRVQAAKIPSGVDLPRVQPKFQAPFLGF 91
           TK +T+H ++ ++SLFN+ S  I T+ +  P FR+QAAK+P GV+LP+V+PKFQAPFLGF
Sbjct: 16  TKPVTLHPRNGKVSLFNHRSQIIKTSKE--PVFRIQAAKLPPGVELPKVEPKFQAPFLGF 73

Query: 92  TKTAEIWNSRACMIGIVFTFIVELILNKGILQVIGVEVGKGLDLPL 137
           T+TAEIWNSRACM+G++  F+VELI+NKGILQVIGV++GKGLDLPL
Sbjct: 74  TRTAEIWNSRACMMGLIGVFVVELIINKGILQVIGVDIGKGLDLPL 119

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440430|ref|XP_002270357.1| PREDICTED: uncharacterized protein LOC100263187 [Vitis vinifera] gi|297740337|emb|CBI30519.3| unnamed protein product [Vitis vinifera]

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 80/122 (65%), Positives = 99/122 (81%), Gaps = 4/122 (3%)

Query: 19  MASSSLISS-SLLPTKFLTIHRQSQQLSLFNNHS--SKIDTASKRLPTFRVQAAKIPSGV 75
           MA+SS IS+ S+LP     +   +QQLS FN+ S  S I    K++ +FRVQAAK+P GV
Sbjct: 1   MATSSPISALSVLPRSAPIVSLLNQQLSPFNHRSPCSTISQPKKKV-SFRVQAAKLPPGV 59

Query: 76  DLPRVQPKFQAPFLGFTKTAEIWNSRACMIGIVFTFIVELILNKGILQVIGVEVGKGLDL 135
           +LP+V+PKF+APFLGFT+TAEIWNSRACMIG++  FIVELILNKGILQVIGV++GKGLDL
Sbjct: 60  ELPKVEPKFEAPFLGFTRTAEIWNSRACMIGLIGIFIVELILNKGILQVIGVDIGKGLDL 119

Query: 136 PL 137
           PL
Sbjct: 120 PL 121

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30385425|gb|AAP23938.1| one helix protein [Ipomoea nil]

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/98 (64%), Positives = 79/98 (80%)

Query: 40  QSQQLSLFNNHSSKIDTASKRLPTFRVQAAKIPSGVDLPRVQPKFQAPFLGFTKTAEIWN 99
           Q  QL  F N       + K + +F++QAAK+P+GV+LP+ QPK + PFLGFT+TAEIWN
Sbjct: 19  QHNQLFFFTNRIHTSTISHKPISSFKLQAAKLPAGVELPKEQPKLEPPFLGFTRTAEIWN 78

Query: 100 SRACMIGIVFTFIVELILNKGILQVIGVEVGKGLDLPL 137
           SRACMIG++ TFIVELILN+GILQ+IGV+VGKGLDLPL
Sbjct: 79  SRACMIGLIGTFIVELILNRGILQLIGVDVGKGLDLPL 116

Source: Ipomoea nil

Species: Ipomoea nil

Genus: Ipomoea

Family: Convolvulaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20562915|gb|AAM22751.1| one helix protein [Deschampsia antarctica]

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/83 (68%), Positives = 70/83 (84%)

Query: 55  DTASKRLPTFRVQAAKIPSGVDLPRVQPKFQAPFLGFTKTAEIWNSRACMIGIVFTFIVE 114
            T S R  TFRV+A K+P+GV +PR QPK   PFLGFTKTAE+WNSRACM+G++ TFIVE
Sbjct: 28  STCSTRATTFRVRAVKLPAGVQVPRAQPKLSEPFLGFTKTAEVWNSRACMMGLIGTFIVE 87

Query: 115 LILNKGILQVIGVEVGKGLDLPL 137
           LILNKG+L++IG E+GKGLD+PL
Sbjct: 88  LILNKGVLEIIGFEMGKGLDIPL 110

Source: Deschampsia antarctica

Species: Deschampsia antarctica

Genus: Deschampsia

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514033|gb|AFK45078.1| unknown [Lotus japonicus]

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 64/101 (63%), Positives = 80/101 (79%), Gaps = 4/101 (3%)

Query: 38  HRQSQQLSLFNNHSSKIDTASKRLPTFRVQAA-KIPSGVDLPRVQPKFQAPFLGFTKTAE 96
           +  +QQ+ L   + S       R+  FRVQAA K P+G + P+VQP+F+APFLGFTKTAE
Sbjct: 15  YSTNQQVYL---NRSATHKNKNRVSFFRVQAAAKPPAGAEFPKVQPQFKAPFLGFTKTAE 71

Query: 97  IWNSRACMIGIVFTFIVELILNKGILQVIGVEVGKGLDLPL 137
           +WNSRACMIG++ TFIVELI+NKGILQVIGVE+GKGL+LPL
Sbjct: 72  VWNSRACMIGLIGTFIVELIINKGILQVIGVEIGKGLNLPL 112

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242047418|ref|XP_002461455.1| hypothetical protein SORBIDRAFT_02g002950 [Sorghum bicolor] gi|241924832|gb|EER97976.1| hypothetical protein SORBIDRAFT_02g002950 [Sorghum bicolor]

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/75 (78%), Positives = 67/75 (89%)

Query: 63  TFRVQAAKIPSGVDLPRVQPKFQAPFLGFTKTAEIWNSRACMIGIVFTFIVELILNKGIL 122
             RV AAK+P GV++PRVQPK   PFLGFT+TAEIWNSRACMIG++ TFIVEL+LNKGIL
Sbjct: 37  ALRVSAAKLPPGVEVPRVQPKLSEPFLGFTQTAEIWNSRACMIGLIGTFIVELVLNKGIL 96

Query: 123 QVIGVEVGKGLDLPL 137
           Q+IGVEVGKGLDLPL
Sbjct: 97  QMIGVEVGKGLDLPL 111

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357153188|ref|XP_003576368.1| PREDICTED: uncharacterized protein LOC100839853 [Brachypodium distachyon]

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/98 (61%), Positives = 73/98 (74%)

Query: 40  QSQQLSLFNNHSSKIDTASKRLPTFRVQAAKIPSGVDLPRVQPKFQAPFLGFTKTAEIWN 99
           Q+ Q    N         S R  T RV+AAK+P+GV +PRVQPK   PFLGFT TAE+WN
Sbjct: 13  QANQAPSGNRLQKNAVACSPRASTLRVRAAKLPAGVQVPRVQPKLSEPFLGFTNTAEVWN 72

Query: 100 SRACMIGIVFTFIVELILNKGILQVIGVEVGKGLDLPL 137
           SRACM+G++ TFIVELILNKG+L++IG EVGKGLD+PL
Sbjct: 73  SRACMMGLIGTFIVELILNKGVLEIIGFEVGKGLDIPL 110

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491018|gb|AFK33575.1| unknown [Lotus japonicus]

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/75 (80%), Positives = 71/75 (94%), Gaps = 1/75 (1%)

Query: 64  FRVQAA-KIPSGVDLPRVQPKFQAPFLGFTKTAEIWNSRACMIGIVFTFIVELILNKGIL 122
           FRVQAA K P+GV+ P+VQP+F+APFLGFTKTAE+WNSRACMIG++ TFIVELI+NKGIL
Sbjct: 38  FRVQAAAKPPAGVEFPKVQPQFKAPFLGFTKTAEVWNSRACMIGLIGTFIVELIINKGIL 97

Query: 123 QVIGVEVGKGLDLPL 137
           QVIGVE+GKGL+LPL
Sbjct: 98  QVIGVEIGKGLNLPL 112

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
TAIR|locus:2185193	110	OHP "AT5G02120" [Arabidopsis t	0.569	0.709	0.734	2.5e-26
TAIR|locus:2823639	265	NPQ4 "NONPHOTOCHEMICAL QUENCHI	0.503	0.260	0.357	1.2e-05

TAIR|locus:2185193 OHP "AT5G02120" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 58/79 (73%), Positives = 69/79 (87%)

Query:    59 KRLPTFRVQAAKIPSGVDLPRVQPKFQAPFLGFTKTAEIWNSRACMIGIVFTFIVELILN 118
             K+ P F V+AAK+P GV +P+ QPK Q  FLGFT+TAEIWNSRACMIG++ TFIVELILN
Sbjct:    33 KQQP-FVVRAAKLPEGVIVPKAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVELILN 91

Query:   119 KGILQVIGVEVGKGLDLPL 137
             KGIL++IGVE+GKGLDLPL
Sbjct:    92 KGILELIGVEIGKGLDLPL 110

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

TAIR|locus:2823639 NPQ4 "NONPHOTOCHEMICAL QUENCHING 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 25/70 (35%), Positives = 37/70 (52%)

Query:    62 PTFRVQAAKIPSGVDL-PRVQPKFQAPFLGFTKTAEIWNSRACMIGIVFTFIVELILNKG 120
             P   ++ A IP G ++   +  K Q P  GFTK  E++  R   +GI F+ I E+I  KG
Sbjct:   159 PPTGLEKAVIPPGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKG 218

Query:   121 ILQVIGVEVG 130
              L  + +E G
Sbjct:   219 ALAQLNIETG 228


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.138   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      137       114   0.00091  102 3  11 22  0.42    30
                                                     29  0.44    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  539 (57 KB)
  Total size of DFA:  114 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.56u 0.13s 11.69t   Elapsed:  00:00:00
  Total cpu time:  11.56u 0.13s 11.69t   Elapsed:  00:00:00
  Start:  Mon May 20 19:08:00 2013   End:  Mon May 20 19:08:00 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009517 "PSII associated light-harvesting complex II" evidence=TAS

GO:0010196 "nonphotochemical quenching" evidence=IMP

GO:0016168 "chlorophyll binding" evidence=TAS

GO:0051738 "xanthophyll binding" evidence=TAS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0010027 "thylakoid membrane organization" evidence=IMP

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	Lil2	HLIP/One helix protein (109 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	Lhcb1-3	SubName- Full=Putative uncharacterized protein; (264 aa)				•			•		0.721
	Lhcb1-2	SubName- Full=Putative uncharacterized protein; (265 aa)				•			•		0.720
	Lhcb7	light-harvesting complex II protein Lhcb7 (338 aa)				•			•		0.708
	Lhcb8	light-harvesting complex II protein Lhcb8 (276 aa)				•			•		0.704
	eugene3.01350026	ferrochelatase (EC-4.99.1.1); Catalyzes the ferrous insertion into protoporphyrin IX (By simila [...] (506 aa)				•			•		0.673
	gw1.VI.1271.1	ferrochelatase (EC-4.99.1.1); Catalyzes the ferrous insertion into protoporphyrin IX (By simila [...] (381 aa)				•			•		0.655
	Lhca4	light-harvesting complex I protein Lhca4 (251 aa)				•			•		0.547
	estExt_fgenesh4_pg.C_LG_II0752	SubName- Full=Putative uncharacterized protein; (272 aa)				•			•		0.462
	estExt_Genewise1_v1.C_LG_III1082	SubName- Full=Putative uncharacterized protein; (144 aa)				•					0.408

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	137
PHA02337	35	putative high light inducible protein	99.54
PLN00014	250	light-harvesting-like protein 3; Provisional	99.18
PLN00084	214	photosystem II subunit S (PsbS); Provisional	99.14
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	98.73
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	98.71
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	98.48
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	98.33
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	98.3
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	98.29
PF00504	156	Chloroa_b-bind: Chlorophyll A-B binding protein; I	98.24
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	98.24
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	98.18
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	98.17
PLN00100	246	light-harvesting complex chlorophyll-a/b protein o	98.09
PLN00101	250	Photosystem I light-harvesting complex type 4 prot	98.05
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	98.02
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	98.0
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	97.98
PLN00048	262	photosystem I light harvesting chlorophyll a/b bin	97.94
PLN00097	244	photosystem I light harvesting complex Lhca2/4, ch	97.94
PLN00098	267	light-harvesting complex I chlorophyll a/b-binding	97.92
PLN00147	252	light-harvesting complex I chlorophyll-a/b binding	97.86
PLN00187	286	photosystem II light-harvesting complex II protein	97.85
PLN00171	324	photosystem light-harvesting complex -chlorophyll	97.84
PLN00099	243	light-harvesting complex IChlorophyll A-B binding	97.76
PLN00171	324	photosystem light-harvesting complex -chlorophyll	97.75
PLN00025	262	photosystem II light harvesting chlorophyll a/b bi	97.73
PLN00187	286	photosystem II light-harvesting complex II protein	97.52
PLN00170	255	photosystem II light-harvesting-Chl-binding protei	97.4
PLN00089	209	fucoxanthin-chlorophyll a/c binding protein; Provi	97.0
PLN02449	485	ferrochelatase	95.99
PLN00120	202	fucoxanthin-chlorophyll a-c binding protein; Provi	95.16

>PHA02337 putative high light inducible protein

Probab=99.54  E-value=4.7e-15  Score=91.45  Aligned_cols=32  Identities=31%  Similarity=0.267  Sum_probs=30.6

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHhchhhh
Q 032628           91 FTKTAEIWNSRACMIGIVFTFIVELILNKGIL  122 (137)
Q Consensus        91 Ft~~AE~~NGRlAMiGfv~~l~~El~tG~giL  122 (137)
                      |+++||+||||+|||||++++++|++||+++-
T Consensus         1 ft~~aE~~NGRlAMiGfv~~~~~e~~tGq~ip   32 (35)
T PHA02337          1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQIIP   32 (35)
T ss_pred             CccHHHHHhhHHHHHHHHHHHHHHHHhCCCCC
Confidence            78999999999999999999999999999874

>PLN00014 light-harvesting-like protein 3; Provisional

Probab=99.18  E-value=1.4e-11  Score=102.58  Aligned_cols=39  Identities=28%  Similarity=0.543  Sum_probs=35.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhhccC
Q 032628           93 KTAEIWNSRACMIGIVFTFIVELILNKGILQVIGVEVGK  131 (137)
Q Consensus        93 ~~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~~~G~  131 (137)
                      +++|++|||+|||||++++++|++||+|+++|+|...|+
T Consensus       160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f~~k  198 (250)
T PLN00014        160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNFFCK  198 (250)
T ss_pred             chhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhhhhH
Confidence            469999999999999999999999999999999876653

>PLN00084 photosystem II subunit S (PsbS); Provisional

Probab=99.14  E-value=3.1e-11  Score=97.73  Aligned_cols=42  Identities=26%  Similarity=0.445  Sum_probs=39.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHh-chhhhhhhhhhccCCC
Q 032628           92 TKTAEIWNSRACMIGIVFTFIVELIL-NKGILQVIGVEVGKGL  133 (137)
Q Consensus        92 t~~AE~~NGRlAMiGfv~~l~~El~t-G~giL~qig~~~G~gl  133 (137)
                      ++..|+||||+||+||+++++.|++| |+|+++|+++++|...
T Consensus       135 qK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi  177 (214)
T PLN00084        135 QKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPV  177 (214)
T ss_pred             ccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcc
Confidence            45689999999999999999999999 9999999999999764

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=98.73  E-value=1.9e-08  Score=84.34  Aligned_cols=68  Identities=22%  Similarity=0.204  Sum_probs=47.6

Q ss_pred             cccCCCCceeEEEeecCCCCCCCCCCC-------CC----CCCCCCCCch--------------hhHHHHHHHHHHHHHH
Q 032628           55 DTASKRLPTFRVQAAKIPSGVDLPRVQ-------PK----FQAPFLGFTK--------------TAEIWNSRACMIGIVF  109 (137)
Q Consensus        55 ~~~~~r~~s~~VrA~~~p~gv~~p~~~-------p~----~~~~~~GFt~--------------~AE~~NGRlAMiGfv~  109 (137)
                      .....|.++++|.++........|-..       |.    ..+..+||++              .+|+.|||+||+|+++
T Consensus        33 ~~~~~~~~~~v~~~a~~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G  112 (255)
T PLN00170         33 AAKVGARTLLVVAAAAQPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVG  112 (255)
T ss_pred             ccccccceeEEEEeccCCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHh
Confidence            455666677777776655555555332       21    2234556654              5899999999999999


Q ss_pred             HHHHHHHhchhhh
Q 032628          110 TFIVELILNKGIL  122 (137)
Q Consensus       110 ~l~~El~tG~giL  122 (137)
                      +++.|+++|...+
T Consensus       113 ~~v~e~l~g~~w~  125 (255)
T PLN00170        113 IFVGQAWSGIPWF  125 (255)
T ss_pred             hhhHHHccCCChh
Confidence            9999999987654

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=98.71  E-value=2.7e-08  Score=83.53  Aligned_cols=31  Identities=23%  Similarity=0.357  Sum_probs=28.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q 032628           94 TAEIWNSRACMIGIVFTFIVELILNKGILQV  124 (137)
Q Consensus        94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL~q  124 (137)
                      ++|+.|||+||+|++++++.|++++.|++.+
T Consensus        87 ~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~  117 (262)
T PLN00048         87 YGEVINGRFAMLGAAGAIAPEILGKAGLIPQ  117 (262)
T ss_pred             HHHhhcchHHHHHHhhHHHHHHhccCCcccc
Confidence            4699999999999999999999999888753

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=98.48  E-value=2.7e-07  Score=77.21  Aligned_cols=29  Identities=31%  Similarity=0.499  Sum_probs=27.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhchhhh
Q 032628           94 TAEIWNSRACMIGIVFTFIVELILNKGIL  122 (137)
Q Consensus        94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL  122 (137)
                      .+|+.|||+||+|++++++.|++++.|++
T Consensus        93 ~aEl~hGRlAMla~~G~l~~e~l~~~g~~  121 (250)
T PLN00101         93 QAELVNGRWAMLGVAGMLLPEVFTKIGII  121 (250)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence            58999999999999999999999999886

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=98.33  E-value=9.1e-07  Score=74.64  Aligned_cols=30  Identities=27%  Similarity=0.383  Sum_probs=27.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhchhhhh
Q 032628           94 TAEIWNSRACMIGIVFTFIVELILNKGILQ  123 (137)
Q Consensus        94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL~  123 (137)
                      .+|+.|||+||+|++++++.|++++.|++.
T Consensus       102 ~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~  131 (267)
T PLN00098        102 QAELMHSRWAMLAVAGILIPECLERLGFIE  131 (267)
T ss_pred             HHHhhccHHHHHHHHHHHHHHHhcCCCccc
Confidence            699999999999999999999999887754

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=98.30  E-value=3.5e-07  Score=69.15  Aligned_cols=28  Identities=25%  Similarity=0.178  Sum_probs=24.0

Q ss_pred             CCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 032628           88 FLGFTKTAEIWNSRACMIGIVFTFIVEL  115 (137)
Q Consensus        88 ~~GFt~~AE~~NGRlAMiGfv~~l~~El  115 (137)
                      .+.+++.+|++|||+|||||++++++|.
T Consensus       129 ~~~~~~~~El~NGRlAMla~~g~~~~e~  156 (156)
T PF00504_consen  129 EKEFMQLAELKNGRLAMLAFAGFVAQEA  156 (156)
T ss_dssp             SHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3456789999999999999999999873

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=98.29  E-value=1.6e-06  Score=72.39  Aligned_cols=29  Identities=28%  Similarity=0.413  Sum_probs=26.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhchhhh
Q 032628           94 TAEIWNSRACMIGIVFTFIVELILNKGIL  122 (137)
Q Consensus        94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL  122 (137)
                      .+|+.|||+||+|++++++.|++++.|+.
T Consensus        84 ~aEl~hGR~AMLa~~G~lv~e~l~~~g~~  112 (244)
T PLN00097         84 QAELMHARWAMLGLAGCVAPELLTKIGMA  112 (244)
T ss_pred             HHHHhcchHHHHHHhhhhHHHHhcCCCcc
Confidence            69999999999999999999999988763

>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein

Probab=98.24  E-value=2.6e-07  Score=69.87  Aligned_cols=32  Identities=19%  Similarity=0.232  Sum_probs=28.1

Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHhchh
Q 032628           89 LGFTKTAEIWNSRACMIGIVFTFIVELILNKG  120 (137)
Q Consensus        89 ~GFt~~AE~~NGRlAMiGfv~~l~~El~tG~g  120 (137)
                      +.|...+|++|||+||+||++.++.|+.++.+
T Consensus        26 ~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~   57 (156)
T PF00504_consen   26 FAWYREAELKHGRVAMLAFVGALVQEAGTGFP   57 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTT
T ss_pred             HHHHHHhHHHhhhhhhhhhHHHHHHHHhccCC
Confidence            34567899999999999999999999998854

LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=98.24  E-value=1.2e-06  Score=71.42  Aligned_cols=30  Identities=23%  Similarity=0.153  Sum_probs=27.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhchhhhh
Q 032628           94 TAEIWNSRACMIGIVFTFIVELILNKGILQ  123 (137)
Q Consensus        94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL~  123 (137)
                      .+|+.|||+||+|+.+++..|++||+|++.
T Consensus       179 ~~El~NGRlAM~a~~g~~~~~~~tg~g~~~  208 (209)
T PLN00089        179 DKELKNGRLAMVAIGGIATGSAITGHGFPY  208 (209)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence            369999999999999999999999999863

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=98.18  E-value=1.5e-06  Score=72.78  Aligned_cols=35  Identities=20%  Similarity=0.281  Sum_probs=32.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhh
Q 032628           94 TAEIWNSRACMIGIVFTFIVELILNKGILQVIGVE  128 (137)
Q Consensus        94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~~  128 (137)
                      ..|+.|||+||+|+++++++|++||+|+++++.--
T Consensus       202 ~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~h  236 (252)
T PLN00147        202 LKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTH  236 (252)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence            47999999999999999999999999999988543

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=98.17  E-value=1.1e-06  Score=73.49  Aligned_cols=37  Identities=19%  Similarity=0.192  Sum_probs=33.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhhc
Q 032628           93 KTAEIWNSRACMIGIVFTFIVELILNKGILQVIGVEV  129 (137)
Q Consensus        93 ~~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~~~  129 (137)
                      +..|+.|||+||++|+++++++++||+|.+++++-..
T Consensus       161 K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hl  197 (246)
T PLN00100        161 KVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHM  197 (246)
T ss_pred             HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhc
Confidence            3699999999999999999999999999999986543

>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional

Probab=98.09  E-value=4.8e-06  Score=69.74  Aligned_cols=24  Identities=21%  Similarity=0.202  Sum_probs=22.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh
Q 032628           94 TAEIWNSRACMIGIVFTFIVELIL  117 (137)
Q Consensus        94 ~AE~~NGRlAMiGfv~~l~~El~t  117 (137)
                      .+|+.|||+||+|+++.++.|+++
T Consensus        75 ~aEl~hGR~AMla~~G~~~~E~~~   98 (246)
T PLN00100         75 EAELMNGRWAMAATAGILFTDAVG   98 (246)
T ss_pred             HHHhhcchHHHHHHhhhhHHHHhc
Confidence            589999999999999999999864

>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional

Probab=98.05  E-value=1.8e-06  Score=72.26  Aligned_cols=36  Identities=17%  Similarity=0.211  Sum_probs=32.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhhc
Q 032628           94 TAEIWNSRACMIGIVFTFIVELILNKGILQVIGVEV  129 (137)
Q Consensus        94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~~~  129 (137)
                      ..|+.|||+||++|++.++++++||+|.++++.--.
T Consensus       202 ~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hl  237 (250)
T PLN00101        202 EKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHL  237 (250)
T ss_pred             HHHHhhcchHHHHHhhHhheehccCCChHHHHHHHh
Confidence            589999999999999999999999999999985444

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=98.02  E-value=5.2e-06  Score=69.21  Aligned_cols=37  Identities=19%  Similarity=0.248  Sum_probs=32.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHH-HHhchhhhhhhhhhcc
Q 032628           94 TAEIWNSRACMIGIVFTFIVE-LILNKGILQVIGVEVG  130 (137)
Q Consensus        94 ~AE~~NGRlAMiGfv~~l~~E-l~tG~giL~qig~~~G  130 (137)
                      ..|+.|||+|||++++.+++| +++|+|+++++.--..
T Consensus       188 ~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hla  225 (243)
T PLN00099        188 VKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA  225 (243)
T ss_pred             HHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhc
Confidence            489999999999999999999 5789999999865443

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=98.00  E-value=7.2e-06  Score=66.49  Aligned_cols=32  Identities=22%  Similarity=0.330  Sum_probs=28.5

Q ss_pred             CCCCch----------hhHHHHHHHHHHHHHHHHHHHHHhch
Q 032628           88 FLGFTK----------TAEIWNSRACMIGIVFTFIVELILNK  119 (137)
Q Consensus        88 ~~GFt~----------~AE~~NGRlAMiGfv~~l~~El~tG~  119 (137)
                      .+||++          .+|+.|||+||||+.++++.|+++|.
T Consensus       154 d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g~  195 (202)
T PLN00120        154 DFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGVE  195 (202)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            467875          47999999999999999999999996

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=97.98  E-value=4.9e-06  Score=70.10  Aligned_cols=36  Identities=25%  Similarity=0.369  Sum_probs=32.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhhc
Q 032628           94 TAEIWNSRACMIGIVFTFIVELILNKGILQVIGVEV  129 (137)
Q Consensus        94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~~~  129 (137)
                      ..|+.|||+||+++++.+++|++||+|.++++.--.
T Consensus       208 ~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hl  243 (262)
T PLN00025        208 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL  243 (262)
T ss_pred             HHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHh
Confidence            689999999999999999999999999999875433

>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional

Probab=97.94  E-value=6e-06  Score=69.51  Aligned_cols=34  Identities=29%  Similarity=0.315  Sum_probs=31.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhh
Q 032628           94 TAEIWNSRACMIGIVFTFIVELILNKGILQVIGV  127 (137)
Q Consensus        94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~  127 (137)
                      ..|+.|||+||+++++++++|++||+|.++++.-
T Consensus       212 ~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~  245 (262)
T PLN00048        212 LKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLD  245 (262)
T ss_pred             HHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHH
Confidence            5899999999999999999999999999988743

>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional

Probab=97.94  E-value=6.4e-06  Score=68.83  Aligned_cols=35  Identities=17%  Similarity=0.133  Sum_probs=32.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhh
Q 032628           94 TAEIWNSRACMIGIVFTFIVELILNKGILQVIGVE  128 (137)
Q Consensus        94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~~  128 (137)
                      .+|+.|||+||+++++.++++++||+|.++++.--
T Consensus       199 ~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~H  233 (244)
T PLN00097        199 LKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSH  233 (244)
T ss_pred             HHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHH
Confidence            59999999999999999999999999999988543

>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional

Probab=97.92  E-value=8e-06  Score=69.00  Aligned_cols=34  Identities=24%  Similarity=0.245  Sum_probs=31.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhh
Q 032628           94 TAEIWNSRACMIGIVFTFIVELILNKGILQVIGV  127 (137)
Q Consensus        94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~  127 (137)
                      ..|+.|||+||+++++.++++++||+|+++++.-
T Consensus       217 ~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~  250 (267)
T PLN00098        217 TKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMA  250 (267)
T ss_pred             HHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHH
Confidence            4899999999999999999999999999999853

>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional

Probab=97.86  E-value=1.8e-05  Score=66.33  Aligned_cols=28  Identities=32%  Similarity=0.463  Sum_probs=25.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhchhh
Q 032628           94 TAEIWNSRACMIGIVFTFIVELILNKGI  121 (137)
Q Consensus        94 ~AE~~NGRlAMiGfv~~l~~El~tG~gi  121 (137)
                      .+|+.|||+||+|+++.++.|+++..|+
T Consensus        85 ~aElkhGR~AMlA~~G~l~~e~~~~~g~  112 (252)
T PLN00147         85 QAELVHSRFAMAGVAGILFTDLLRVTGI  112 (252)
T ss_pred             HHHhhccHHHHHHHhhhhHHHHhccCCC
Confidence            5899999999999999999999887664

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=97.85  E-value=1.2e-05  Score=68.55  Aligned_cols=36  Identities=22%  Similarity=0.204  Sum_probs=32.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhhc
Q 032628           94 TAEIWNSRACMIGIVFTFIVELILNKGILQVIGVEV  129 (137)
Q Consensus        94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~~~  129 (137)
                      ..|+.|||+||+++++.+++|++||+|.++++.--.
T Consensus       237 ~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hl  272 (286)
T PLN00187        237 LAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHL  272 (286)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHh
Confidence            589999999999999999999999999998875433

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=97.84  E-value=1.3e-05  Score=69.43  Aligned_cols=34  Identities=26%  Similarity=0.267  Sum_probs=31.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhh
Q 032628           94 TAEIWNSRACMIGIVFTFIVELILNKGILQVIGV  127 (137)
Q Consensus        94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~  127 (137)
                      ..|+.|||+||+|+++++++|.+||+|.++++.-
T Consensus       275 ~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~  308 (324)
T PLN00171        275 VKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVD  308 (324)
T ss_pred             HHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHH
Confidence            4699999999999999999999999999988743

>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional

Probab=97.76  E-value=2.9e-05  Score=64.80  Aligned_cols=24  Identities=17%  Similarity=0.220  Sum_probs=22.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh
Q 032628           94 TAEIWNSRACMIGIVFTFIVELIL  117 (137)
Q Consensus        94 ~AE~~NGRlAMiGfv~~l~~El~t  117 (137)
                      .+|+.|||+||+|+++.+++|+++
T Consensus        84 ~~ELkHGR~AMLAv~G~i~~E~l~  107 (243)
T PLN00099         84 ESELIHCRWAMLAVPGILVPEALG  107 (243)
T ss_pred             HHhccCCcHHHHHHhhHHHHHHhc
Confidence            589999999999999999999864

>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional

Probab=97.75  E-value=2.5e-05  Score=67.77  Aligned_cols=29  Identities=24%  Similarity=0.234  Sum_probs=26.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhchhhh
Q 032628           94 TAEIWNSRACMIGIVFTFIVELILNKGIL  122 (137)
Q Consensus        94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL  122 (137)
                      .+|+.|||+||+|+++.++.|++++.|..
T Consensus       150 eaELkHGR~AMLA~~G~lv~e~l~~~g~~  178 (324)
T PLN00171        150 NFEILHARWAMLAALGVVIPEVLDLFGAV  178 (324)
T ss_pred             HHHhccchHHHHHHhhHHHHHHhccCCcc
Confidence            58999999999999999999998877654

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional

Probab=97.73  E-value=3.2e-05  Score=65.26  Aligned_cols=28  Identities=25%  Similarity=0.414  Sum_probs=25.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhchhh
Q 032628           94 TAEIWNSRACMIGIVFTFIVELILNKGI  121 (137)
Q Consensus        94 ~AE~~NGRlAMiGfv~~l~~El~tG~gi  121 (137)
                      .+|+.|||+||+|++++++.|++++.|+
T Consensus        93 e~El~hGR~AMLa~~G~i~~e~l~~~g~  120 (262)
T PLN00025         93 ELEVIHARWAMLGALGCVTPELLAKNGV  120 (262)
T ss_pred             HHHHhccHHHHHHHhhhhhHHHhhcCCc
Confidence            6899999999999999999999987766

>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional

Probab=97.52  E-value=3.9e-05  Score=65.48  Aligned_cols=29  Identities=17%  Similarity=0.185  Sum_probs=26.0

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHhch
Q 032628           91 FTKTAEIWNSRACMIGIVFTFIVELILNK  119 (137)
Q Consensus        91 Ft~~AE~~NGRlAMiGfv~~l~~El~tG~  119 (137)
                      +...+|++|||+||+|++++++.|+++|.
T Consensus       132 r~REaELiHGRwAMLAvaG~lvpEll~G~  160 (286)
T PLN00187        132 RFRECELIHGRWAMLATLGALSVEALTGV  160 (286)
T ss_pred             HHHHHHhhhhHHHHHHhhchhhHHhccCC
Confidence            44789999999999999999999998764

>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional

Probab=97.40  E-value=7e-05  Score=63.08  Aligned_cols=34  Identities=26%  Similarity=0.374  Sum_probs=30.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhh
Q 032628           93 KTAEIWNSRACMIGIVFTFIVELILNKGILQVIGV  127 (137)
Q Consensus        93 ~~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~  127 (137)
                      +.+|+.|||+||++|++.+++. .||+|.|+.+|+
T Consensus       222 k~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~~  255 (255)
T PLN00170        222 KLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALGL  255 (255)
T ss_pred             HHHHHhhhHHHHHHHHhHheee-ccCCCchhhhcC
Confidence            5799999999999999977766 799999999874

>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional

Probab=97.00  E-value=0.00064  Score=55.54  Aligned_cols=28  Identities=18%  Similarity=0.316  Sum_probs=24.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhchh
Q 032628           93 KTAEIWNSRACMIGIVFTFIVELILNKG  120 (137)
Q Consensus        93 ~~AE~~NGRlAMiGfv~~l~~El~tG~g  120 (137)
                      ..+|+.|||+||+++++.+++|.++.-|
T Consensus        76 r~~ElkhGR~AMlA~~G~~~~~~~~~pG  103 (209)
T PLN00089         76 RESELKHGRAAMLAVAGFIAPDFVRIPG  103 (209)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999999876443

>PLN02449 ferrochelatase

Probab=95.99  E-value=0.0044  Score=56.30  Aligned_cols=32  Identities=25%  Similarity=0.381  Sum_probs=28.3

Q ss_pred             CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhchhhhhh
Q 032628           85 QAPFLGFTKTAEIWNSRACMIGIVFTFIVELILNKGILQV  124 (137)
Q Consensus        85 ~~~~~GFt~~AE~~NGRlAMiGfv~~l~~El~tG~giL~q  124 (137)
                      ..+.||++.        +||+||++++.+|+++|+|.+++
T Consensus       454 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  485 (485)
T PLN02449        454 AVWEWGWTK--------AAMLAVLLLLVLEVTSGFGNLHQ  485 (485)
T ss_pred             hhhhhcccc--------hHHHHHHHHHHHHHHcCCCcCCC
Confidence            447789887        99999999999999999999864

>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional

Probab=95.16  E-value=0.0052  Score=49.93  Aligned_cols=24  Identities=25%  Similarity=0.332  Sum_probs=22.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHH
Q 032628           92 TKTAEIWNSRACMIGIVFTFIVEL  115 (137)
Q Consensus        92 t~~AE~~NGRlAMiGfv~~l~~El  115 (137)
                      ...+|+.|||+||+++++.+++|+
T Consensus        64 ~r~~ElkhGRlAMlA~~G~~~~~~   87 (202)
T PLN00120         64 LRYVEIKHGRISMLAVVGYLVTEA   87 (202)
T ss_pred             HHHHHhhcccHHHHhhccceeecc
Confidence            357999999999999999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	137
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	98.74
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	98.5
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	98.42
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	98.29
2wsc_2	269	LHCA2, type II chlorophyll A/B binding protein fro	98.27
2wsc_3	276	LHCA3, type II chlorophyll A/B binding protein fro	98.21
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	98.2
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	98.02
2bhw_A	232	Chlorophyll A-B binding protein AB80; LHC-II, phot	97.78
2wsc_4	251	Chlorophyll A-B binding protein P4, chloroplastic;	97.76
3pl9_A	243	Chlorophyll A-B binding protein; CP29, light-harve	97.69
2wsc_1	241	AT3G54890, LHCA1; photosynthesis, electron transfe	97.6

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=98.74  E-value=9.3e-11  Score=97.51  Aligned_cols=32  Identities=28%  Similarity=0.428  Sum_probs=28.7

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHhchhhh
Q 032628           91 FTKTAEIWNSRACMIGIVFTFIVELILNKGIL  122 (137)
Q Consensus        91 Ft~~AE~~NGRlAMiGfv~~l~~El~tG~giL  122 (137)
                      |..++|++|||+||+|+++.++.|++++.|++
T Consensus        98 ~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~  129 (276)
T 2wsc_3           98 WLAYGEIINGRYAMLGAVGAIAPEILGKAGLI  129 (276)
T ss_dssp             HHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCC
T ss_pred             HHHHHHhhcccchhhhHHHHHHHHHhcccccc
Confidence            34569999999999999999999999988876

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=98.50  E-value=7.7e-08  Score=77.87  Aligned_cols=37  Identities=24%  Similarity=0.377  Sum_probs=33.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhhc
Q 032628           93 KTAEIWNSRACMIGIVFTFIVELILNKGILQVIGVEV  129 (137)
Q Consensus        93 ~~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~~~  129 (137)
                      ..+|++|||+||+||+++++.|++||+|+++++.--.
T Consensus       177 ~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~  213 (232)
T 2bhw_A          177 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL  213 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHH
T ss_pred             HHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHh
Confidence            4689999999999999999999999999999886443

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=98.42  E-value=1.5e-07  Score=77.27  Aligned_cols=35  Identities=26%  Similarity=0.262  Sum_probs=32.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhh
Q 032628           93 KTAEIWNSRACMIGIVFTFIVELILNKGILQVIGV  127 (137)
Q Consensus        93 ~~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~  127 (137)
                      ..+|++|||+||+||++.+++|++||+|+++++.-
T Consensus       194 r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~  228 (243)
T 3pl9_A          194 QLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVT  228 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            47999999999999999999999999999998853

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=98.29  E-value=1.1e-07  Score=78.82  Aligned_cols=37  Identities=19%  Similarity=0.240  Sum_probs=33.6

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhh
Q 032628           90 GFTKTAEIWNSRACMIGIVFTFIVELILNKGILQVIG  126 (137)
Q Consensus        90 GFt~~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig  126 (137)
                      .....+|++|||+||+||+++++.|++||+|+++++.
T Consensus       215 ~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~  251 (269)
T 2wsc_2          215 KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF  251 (269)
T ss_dssp             TTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCS
T ss_pred             HHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            3456799999999999999999999999999998875

>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*

Probab=98.27  E-value=1.6e-07  Score=77.85  Aligned_cols=30  Identities=40%  Similarity=0.515  Sum_probs=27.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhchhhh
Q 032628           93 KTAEIWNSRACMIGIVFTFIVELILNKGIL  122 (137)
Q Consensus        93 ~~AE~~NGRlAMiGfv~~l~~El~tG~giL  122 (137)
                      .++|+.|||+||+|+++.++.|++++.|++
T Consensus       103 r~aElkHGR~AMLA~~G~l~~E~l~~~G~~  132 (269)
T 2wsc_2          103 VQAELVHSRWAMLGAAGIFIPEFLTKLGIL  132 (269)
T ss_dssp             HHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred             HHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence            479999999999999999999999877654

>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*

Probab=98.21  E-value=2.6e-07  Score=76.85  Aligned_cols=34  Identities=29%  Similarity=0.346  Sum_probs=30.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhh
Q 032628           93 KTAEIWNSRACMIGIVFTFIVELILNKGILQVIG  126 (137)
Q Consensus        93 ~~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig  126 (137)
                      ..+|++|||+||+||+++++.|++||+|+++++.
T Consensus       225 r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~  258 (276)
T 2wsc_3          225 KLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLL  258 (276)
T ss_dssp             CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC--
T ss_pred             HHhhhcccchHHHHHHHHHHHHHhcCCChHHHHH
Confidence            5789999999999999999999999999998875

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=98.20  E-value=7.3e-08  Score=79.01  Aligned_cols=34  Identities=29%  Similarity=0.453  Sum_probs=30.2

Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHhchhhh
Q 032628           89 LGFTKTAEIWNSRACMIGIVFTFIVELILNKGIL  122 (137)
Q Consensus        89 ~GFt~~AE~~NGRlAMiGfv~~l~~El~tG~giL  122 (137)
                      +.|...+|++|||+||+|+++.++.|++++.|++
T Consensus        88 ~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~  121 (251)
T 2wsc_4           88 LRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII  121 (251)
T ss_dssp             TTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence            3445689999999999999999999999998876

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=98.02  E-value=6.8e-07  Score=73.04  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=33.2

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHH-HHhchhhhhhhhhhc
Q 032628           92 TKTAEIWNSRACMIGIVFTFIVE-LILNKGILQVIGVEV  129 (137)
Q Consensus        92 t~~AE~~NGRlAMiGfv~~l~~E-l~tG~giL~qig~~~  129 (137)
                      -..+|++|||+||+||++.++.| ++||+|++++++.-.
T Consensus       187 ~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~  225 (241)
T 2wsc_1          187 LKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL  225 (241)
T ss_dssp             SCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSC
T ss_pred             HHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHh
Confidence            35799999999999999999999 589999999886443

>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*

Probab=97.78  E-value=3.4e-05  Score=62.37  Aligned_cols=28  Identities=29%  Similarity=0.449  Sum_probs=24.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhchh
Q 032628           93 KTAEIWNSRACMIGIVFTFIVELILNKG  120 (137)
Q Consensus        93 ~~AE~~NGRlAMiGfv~~l~~El~tG~g  120 (137)
                      .++|+.|||+||+|+++.++.|+++..|
T Consensus        62 ReaELkHGR~AMLA~~G~lv~E~l~~~G   89 (232)
T 2bhw_A           62 RELEVIHSRWAMLGALGSVFPELLSRNG   89 (232)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHhccchHHHhhhhhhhHHHhccCC
Confidence            3799999999999999999999976443

>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*

Probab=97.76  E-value=3.3e-06  Score=69.18  Aligned_cols=34  Identities=26%  Similarity=0.250  Sum_probs=31.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhh
Q 032628           93 KTAEIWNSRACMIGIVFTFIVELILNKGILQVIGV  127 (137)
Q Consensus        93 ~~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~  127 (137)
                      +..|+.|||+ ||||++++++|++||+|+++++.-
T Consensus       201 k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~  234 (251)
T 2wsc_4          201 KEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQ  234 (251)
T ss_dssp             TTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTT
T ss_pred             HHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHH
Confidence            4789999999 999999999999999999988753

>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}

Probab=97.69  E-value=1.6e-05  Score=65.24  Aligned_cols=30  Identities=20%  Similarity=0.208  Sum_probs=26.6

Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHhc
Q 032628           89 LGFTKTAEIWNSRACMIGIVFTFIVELILN  118 (137)
Q Consensus        89 ~GFt~~AE~~NGRlAMiGfv~~l~~El~tG  118 (137)
                      +.+..++|++|||+||+|+++.++.|+.+|
T Consensus        89 l~r~ReaELkHGRwAMLAvlG~lvpE~l~g  118 (243)
T 3pl9_A           89 LQRFRECELIHGRWAMLATLGALTVEGLTG  118 (243)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHhhhhcchhHHHHHHHHHhHHhhcC
Confidence            345578999999999999999999999876

>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*

Probab=97.60  E-value=2.6e-06  Score=69.55  Aligned_cols=24  Identities=17%  Similarity=0.220  Sum_probs=22.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh
Q 032628           94 TAEIWNSRACMIGIVFTFIVELIL  117 (137)
Q Consensus        94 ~AE~~NGRlAMiGfv~~l~~El~t  117 (137)
                      .+|+.|||+||+++++.++.|+++
T Consensus        85 ~~El~hgR~AMla~~G~~~~e~~~  108 (241)
T 2wsc_1           85 ESELIHCRWAMLAVPGILVPEALG  108 (241)
T ss_dssp             HHHHHHHHHHTTTSTTSSSTTCCC
T ss_pred             HHHHhhchhHHhhhhcccchhhcc
Confidence            699999999999999999999753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	137
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	98.64
d1rwta_	218	Chlorophyll a-b binding protein {Spinach (Spinacia	97.81

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.64  E-value=8.6e-09  Score=79.73  Aligned_cols=34  Identities=26%  Similarity=0.369  Sum_probs=31.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhh
Q 032628           94 TAEIWNSRACMIGIVFTFIVELILNKGILQVIGV  127 (137)
Q Consensus        94 ~AE~~NGRlAMiGfv~~l~~El~tG~giL~qig~  127 (137)
                      .+|+.|||+||||++++++.|++||+|.++++.-
T Consensus       165 ~kElkNGRLAMlAi~G~~~qe~vtG~gp~~nl~~  198 (218)
T d1rwta_         165 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD  198 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHhhhhcCCCHHHHHHH
Confidence            4899999999999999999999999999999753

>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.81  E-value=1.2e-05  Score=61.61  Aligned_cols=26  Identities=23%  Similarity=0.323  Sum_probs=23.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhch
Q 032628           94 TAEIWNSRACMIGIVFTFIVELILNK  119 (137)
Q Consensus        94 ~AE~~NGRlAMiGfv~~l~~El~tG~  119 (137)
                      ++|+.|||+||+++++.+++|+...-
T Consensus        50 eaELKHGR~AMLA~vG~~~~E~~~~~   75 (218)
T d1rwta_          50 ELEVIHCRWAMLGALGCVFPELLARN   75 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhhceehHhhhcceeehhhhccC
Confidence            79999999999999999999987643