Citrus Sinensis ID: 032918

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
MNRTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTFPVARFILFVITPAWLANGLREGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYCLGVAFLFFFTVLYLCS
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHccccccccEEEEEEEcHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccHccHHHHEHHHHHcHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mnrtgrrshmQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVganlfypktfpvARFILFVITPawlanglregIAAGVYCLIIGVLVIITEIrgiggfrncecnlhsfsYCLGVAFLFFFTVLYLCS
Flexible Loop (DISEMBL)
mnrtgrrshmqtNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTFPVARFILFVITPAWLANGLREGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYCLGVAFLFFFTVLYLCS
Low Complexity Region (SEG)
MNRTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTFPVARFILFVITPAWLANGLREGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYCLGVAFLFFFTVLYLCS
Disordered region (IsUnstruct)
***********TNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTFPVARFILFVITPAWLANGLREGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYCLGVAFLFFFTVLYLC*
Disordered Region (DISOPRED)
****GRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTFPVARFILFVITPAWLANGLREGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYCLGVAFLFFFTVLYLCS
Disordered Region (DISEMBL)
*********MQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTFPVARFILFVITPAWLANGLREGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYCLGVAFLFFFTVLYLCS
Disordered Region (DISPRO)
**RTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTFPVARFILFVITPAWLANGLREGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYCLGVAFLFFFTVLYLCS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNRTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTFPVARFILFVITPAWLANGLREGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYCLGVAFLFFFTVLYLCS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
O23164	202	Cold-regulated 413 plasma	yes	no	0.961	0.618	0.343	5e-17
Q9SVL6	203	Cold-regulated 413 plasma	no	no	0.961	0.615	0.358	1e-15
Q9XIM7	197	Cold-regulated 413 plasma	no	no	0.961	0.634	0.335	2e-10
O64834	189	Cold-regulated 413 plasma	no	no	0.915	0.629	0.299	2e-09

>sp|O23164|CRPM4_ARATH Cold-regulated 413 plasma membrane protein 4 OS=Arabidopsis thaliana GN=At4g37220 PE=2 SV=2

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 72/131 (54%), Gaps = 6/131 (4%)

Query: 1   MNRTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTF------ 54
           ++RT  ++ M T LLV Y+F + P+V+F+   G FG W+A +A+   LF+PK F      
Sbjct: 64  LDRTNWKTKMLTTLLVPYIFFTLPSVIFQFFSGDFGKWIALIAIIVRLFFPKEFPEWLEI 123

Query: 55  PVARFILFVITPAWLANGLREGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYC 114
           PVA  ++ V++P+ +A  LRE     V CL+I   +    I+  GGF+N     +  S  
Sbjct: 124 PVALILIVVVSPSLIAWTLRESWVGAVICLVIACYLFHEHIKASGGFKNSFTQKNGISNT 183

Query: 115 LGVAFLFFFTV 125
           +G+  L  + V
Sbjct: 184 IGIVALLVYPV 194

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVL6|CRPM2_ARATH Cold-regulated 413 plasma membrane protein 2 OS=Arabidopsis thaliana GN=COR413PM2 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 70/131 (53%), Gaps = 6/131 (4%)

Query: 1   MNRTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTFPV---- 56
           ++RT  ++ M T+LL+ Y+F S P+V+F  L G  G W+A +AV   LF+PK FP     
Sbjct: 65  LDRTNWKTKMLTSLLIPYIFLSLPSVIFNFLSGDVGKWIAFVAVVLRLFFPKHFPDWLEM 124

Query: 57  --ARFILFVITPAWLANGLREGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYC 114
             +  +L V++P +LA+ +R      V  L IG  ++   IR  GGFRN        S  
Sbjct: 125 PGSLILLLVVSPHFLAHHIRGTWIGTVISLFIGCYLLQEHIRASGGFRNSFTQPRGVSNT 184

Query: 115 LGVAFLFFFTV 125
           LG+  L  + V
Sbjct: 185 LGIILLLVYPV 195

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIM7|CRPM1_ARATH Cold-regulated 413 plasma membrane protein 1 OS=Arabidopsis thaliana GN=COR413PM1 PE=1 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 70/137 (51%), Gaps = 12/137 (8%)

Query: 1   MNRTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTFPVARFI 60
           ++RT  +++M T+LL+ Y+F S P+++F I RG+ G W+A +AV   LF+PK    AR  
Sbjct: 62  LDRTNWKTNMLTSLLIPYIFFSLPSLIFGIFRGEIGKWIAFVAVVVQLFFPKH---AREY 118

Query: 61  LFVITPAWLANGLREGIAAGVY---------CLIIGVLVIITEIRGIGGFRNCECNLHSF 111
           L +     L   +   + AG +         CL IG  ++   IR  GGFRN     +  
Sbjct: 119 LELPVALVLLAVVAPNLIAGTFRDSWIGLAICLGIGCYLLQEHIRASGGFRNAFTKANGI 178

Query: 112 SYCLGVAFLFFFTVLYL 128
           S  +G+  L  F V  L
Sbjct: 179 SNTVGIICLVVFPVWAL 195

Arabidopsis thaliana (taxid: 3702)

>sp|O64834|CRPM3_ARATH Cold-regulated 413 plasma membrane protein 3 OS=Arabidopsis thaliana GN=At2g23680 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 8/127 (6%)

Query: 8   SHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTF------PVARFIL 61
           +++  +LL  YLF+S P V+F++LR   G W+A L V   LF P  F      P A  +L
Sbjct: 54  NNIMASLLAPYLFSSLPIVIFQVLRNGVGKWIALLTVILRLFLPNHFHESLEIPGATILL 113

Query: 62  FVITPAWLANGLREGI--AAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYCLGVAF 119
            V+TP+ +    R+ +    G  CL+    +I    +  GG +N        +Y + +  
Sbjct: 114 IVVTPSDIGAIFRDDLRYTGGDVCLLTSFYLINKHTKACGGIKNSFTQKDKVTYSICLWI 173

Query: 120 LFFFTVL 126
           LF + +L
Sbjct: 174 LFVYPIL 180

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
225430868	190	PREDICTED: uncharacterized protein LOC10	0.992	0.678	0.635	3e-40
224096898	176	predicted protein [Populus trichocarpa]	0.992	0.732	0.604	2e-39
225468763	202	PREDICTED: uncharacterized protein LOC10	0.961	0.618	0.389	3e-17
449448542	202	PREDICTED: cold-regulated 413 plasma mem	0.961	0.618	0.404	3e-17
157849744	197	cold regulated 413 plasma membrane 1 [Br	0.992	0.654	0.370	2e-16
356538841	186	PREDICTED: uncharacterized protein LOC10	0.961	0.672	0.343	9e-16
255626673	198	unknown [Glycine max]	0.961	0.631	0.343	9e-16
255556173	202	COR413-PM2, putative [Ricinus communis]	0.992	0.638	0.355	1e-15
351725385	168	cold-regulated protein [Glycine max] gi|	0.953	0.738	0.346	1e-15
388495616	205	unknown [Lotus japonicus]	0.961	0.609	0.335	1e-15

>gi|225430868|ref|XP_002269366.1| PREDICTED: uncharacterized protein LOC100247855 [Vitis vinifera] gi|297735220|emb|CBI17582.3| unnamed protein product [Vitis vinifera]

 Score =  169 bits (428), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 82/129 (63%), Positives = 102/129 (79%)

Query: 1   MNRTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTFPVARFI 60
           +N+ GRRS +Q++LLVL+L TSFP VLF I+RGQ G W A LAV ANLF+P+ FPVA FI
Sbjct: 58  LNQVGRRSSIQSSLLVLFLLTSFPAVLFNIVRGQIGRWFAFLAVAANLFFPRKFPVAGFI 117

Query: 61  LFVITPAWLANGLREGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYCLGVAFL 120
           L V TP WLANGLR+ I  GV+CL++GV ++ITEIRGIGG   CECNL  F + + ++FL
Sbjct: 118 LLVATPDWLANGLRDSIVGGVFCLLLGVCLVITEIRGIGGCSRCECNLLCFGFSVCISFL 177

Query: 121 FFFTVLYLC 129
           FFFT+LYLC
Sbjct: 178 FFFTILYLC 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096898|ref|XP_002310778.1| predicted protein [Populus trichocarpa] gi|222853681|gb|EEE91228.1| predicted protein [Populus trichocarpa]

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/129 (60%), Positives = 100/129 (77%)

Query: 1   MNRTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTFPVARFI 60
           +NR GR+S +QT LLV YL TSFPTVLFK++RGQFG W+A LA+ ANLF+P+TFPV+RFI
Sbjct: 44  LNRVGRKSSVQTTLLVFYLLTSFPTVLFKVVRGQFGYWIAFLAIAANLFFPETFPVSRFI 103

Query: 61  LFVITPAWLANGLREGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYCLGVAFL 120
           LFVI+P  L +GLR  IA  ++CL+IG+  +I EIR I G R  EC+   + YCL ++FL
Sbjct: 104 LFVISPDRLVDGLRNSIAGAIFCLLIGISSVIMEIREIAGNRILECSFLCWGYCLAISFL 163

Query: 121 FFFTVLYLC 129
           FFFT+ YLC
Sbjct: 164 FFFTIKYLC 172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225468763|ref|XP_002274881.1| PREDICTED: uncharacterized protein LOC100267774 [Vitis vinifera] gi|298205064|emb|CBI38360.3| unnamed protein product [Vitis vinifera]

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 75/131 (57%), Gaps = 6/131 (4%)

Query: 1   MNRTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTFPV---- 56
           ++RT  R++M T+LLV Y+F S P VLF +LRG+ G W+A +A+   LF+P+ FP     
Sbjct: 64  LDRTNWRTNMLTSLLVPYIFFSLPPVLFNLLRGEVGKWIAFIAIVLRLFFPRHFPDWLEM 123

Query: 57  --ARFILFVITPAWLANGLREGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYC 114
             +  +L V+ P + A+ LR  +   V CL+IG  ++   IR  GGFRN     H  S  
Sbjct: 124 PGSLILLLVVAPNFFAHTLRGSLIGTVICLLIGCYLLQEHIRASGGFRNSFTRSHGISNT 183

Query: 115 LGVAFLFFFTV 125
           LG+  L  + V
Sbjct: 184 LGIILLLVYPV 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448542|ref|XP_004142025.1| PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Cucumis sativus] gi|449497763|ref|XP_004160511.1| PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Cucumis sativus]

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/131 (40%), Positives = 74/131 (56%), Gaps = 6/131 (4%)

Query: 1   MNRTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTFPV---- 56
           ++RT  R++M T+LLV Y+F S P  +F +LRG  G W+A +AV   LF+P+ FP     
Sbjct: 64  LDRTNWRTNMLTSLLVPYIFFSLPQGIFNLLRGDAGKWIAFVAVVLRLFFPRHFPDWLEI 123

Query: 57  --ARFILFVITPAWLANGLREGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYC 114
             +  +L V TP + A+ LR+  A  V CLIIG  ++   IR  GGFRN     H  S  
Sbjct: 124 PGSLILLLVATPGFFAHTLRDHWAGVVICLIIGCYLLQEHIRASGGFRNSLTQTHGISNT 183

Query: 115 LGVAFLFFFTV 125
           +G+  L  F V
Sbjct: 184 IGIILLLVFPV 194

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|157849744|gb|ABV89655.1| cold regulated 413 plasma membrane 1 [Brassica rapa]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 73/135 (54%), Gaps = 6/135 (4%)

Query: 1   MNRTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTF------ 54
           ++RT  +++M T+LL+ Y+F S P+V+F + RG  G W+A +AV   LF+PK F      
Sbjct: 62  LDRTNWKTNMLTSLLIPYIFFSLPSVIFGLFRGDVGKWIAFVAVVVQLFFPKHFREWFEL 121

Query: 55  PVARFILFVITPAWLANGLREGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYC 114
           P A  +L V+ P  +A   R+     V CL+IG  ++   IR  GGFRN     H  S  
Sbjct: 122 PAALILLIVVAPGLIAGTFRDNWVGLVVCLLIGCYLLQEHIRASGGFRNAFTKAHGISNT 181

Query: 115 LGVAFLFFFTVLYLC 129
           LG+  L  F +  L 
Sbjct: 182 LGIIALVVFPIWALA 196

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538841|ref|XP_003537909.1| PREDICTED: uncharacterized protein LOC100811430 isoform 1 [Glycine max]

 Score = 88.2 bits (217), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 6/131 (4%)

Query: 1   MNRTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTFPV---- 56
           ++RT  ++++ T LL+ Y+F S P+++F + RG+ G W+A +AV   LF P+ FP     
Sbjct: 48  LDRTNWKTNILTALLIPYIFFSLPSLIFDVFRGELGKWIAAVAVVLRLFIPRHFPDWLEL 107

Query: 57  --ARFILFVITPAWLANGLREGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYC 114
             A  +L V+ P+ +A+  R+ I   V CLII   ++   IR  GGFRN     H  S  
Sbjct: 108 PGALILLIVVAPSLIASTFRDNIVGVVVCLIIACYLLQEHIRASGGFRNSFTKAHGVSNS 167

Query: 115 LGVAFLFFFTV 125
           +G+  L  + +
Sbjct: 168 IGIILLLVYPI 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255626673|gb|ACU13681.1| unknown [Glycine max]

 Score = 88.2 bits (217), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 6/131 (4%)

Query: 1   MNRTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTFPV---- 56
           ++RT  ++++ T LL+ Y+F S P+++F + RG+ G W+A +AV   LF P+ FP     
Sbjct: 60  LDRTNWKTNILTALLIPYIFFSLPSLIFDVFRGELGKWIAAVAVVLRLFLPRHFPDWLEL 119

Query: 57  --ARFILFVITPAWLANGLREGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYC 114
             A  +L V+ P+ +A+  R+ I   V CLII   ++   IR  GGFRN     H  S  
Sbjct: 120 PGALILLIVVAPSLIASTFRDNIVGVVVCLIIACYLLQEHIRASGGFRNSFTKAHGISNS 179

Query: 115 LGVAFLFFFTV 125
           +G+  L  + +
Sbjct: 180 IGIILLLVYPI 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556173|ref|XP_002519121.1| COR413-PM2, putative [Ricinus communis] gi|223541784|gb|EEF43332.1| COR413-PM2, putative [Ricinus communis]

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 71/135 (52%), Gaps = 6/135 (4%)

Query: 1   MNRTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTF------ 54
           ++RT  R+++ T LL+ Y+F S P++LF + RG  G W+A +AV   LF+P+ F      
Sbjct: 64  LDRTNWRTNILTGLLIPYIFFSLPSILFSLFRGDLGKWIAFVAVILRLFFPRRFPDWLEM 123

Query: 55  PVARFILFVITPAWLANGLREGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYC 114
           P A  +L V+ P+  A+ LR        CL I   ++   IR  GGFRN     H  S  
Sbjct: 124 PAALILLIVVAPSLFASTLRSSWVGLAICLAIAAYLLQEHIRASGGFRNSFTKAHGISNT 183

Query: 115 LGVAFLFFFTVLYLC 129
           +G+  LF + V  L 
Sbjct: 184 IGIILLFVYPVWALV 198

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725385|ref|NP_001238626.1| cold-regulated protein [Glycine max] gi|213053826|gb|ACJ39218.1| cold-regulated protein [Glycine max]

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 72/130 (55%), Gaps = 6/130 (4%)

Query: 2   NRTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTFPV----- 56
           +RT  ++++ T LL+ Y+F S P+++F + RG+ G W+A +AV   LF P+ FP      
Sbjct: 31  DRTNWKTNILTALLIPYIFFSLPSLIFDVFRGELGKWIAAVAVVLRLFLPRHFPDWLELP 90

Query: 57  -ARFILFVITPAWLANGLREGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYCL 115
            A  +L V+ P+ +A+  R+ I   V CLII   ++   IR  GGFRN     H  S  +
Sbjct: 91  GALILLIVVAPSLIASTFRDNIVGVVVCLIIACYLLQEHIRASGGFRNSFTKAHGISNSI 150

Query: 116 GVAFLFFFTV 125
           G+  L  + +
Sbjct: 151 GIILLLVYPI 160

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495616|gb|AFK35874.1| unknown [Lotus japonicus]

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 72/131 (54%), Gaps = 6/131 (4%)

Query: 1   MNRTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTF------ 54
           ++RT  ++++ T LL+ Y+F S P+++F + RG+ G W+A +A+   +F PK F      
Sbjct: 62  LDRTNWKTNILTGLLIPYIFFSLPSIIFNVFRGEIGKWIALVAIVLRIFIPKHFPDWLEL 121

Query: 55  PVARFILFVITPAWLANGLREGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYC 114
           P A  IL V+ P  +AN  R+ I   V CL+I   ++   IR  GGFRN     +  S  
Sbjct: 122 PAALIILIVVAPGLIANTFRDNIVGVVVCLVIACYLLQEHIRAYGGFRNSFTKANGVSNS 181

Query: 115 LGVAFLFFFTV 125
           +G+  L  + +
Sbjct: 182 IGIIILLVYPI 192

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
TAIR|locus:2115010	202	AT4G37220 "AT4G37220" [Arabido	0.961	0.618	0.343	2e-17
TAIR|locus:2044641	197	COR413-PM1 "AT2G15970" [Arabid	0.961	0.634	0.358	1.4e-16
TAIR|locus:2077982	203	COR413-PM2 "AT3G50830" [Arabid	0.961	0.615	0.358	7.7e-16
TAIR|locus:2049003	189	AT2G23680 "AT2G23680" [Arabido	0.876	0.603	0.306	4.5e-11

TAIR|locus:2115010 AT4G37220 "AT4G37220" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 45/131 (34%), Positives = 72/131 (54%)

Query:     1 MNRTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTFP----- 55
             ++RT  ++ M T LLV Y+F + P+V+F+   G FG W+A +A+   LF+PK FP     
Sbjct:    64 LDRTNWKTKMLTTLLVPYIFFTLPSVIFQFFSGDFGKWIALIAIIVRLFFPKEFPEWLEI 123

Query:    56 -VARFILFVITPAWLANGLREGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYC 114
              VA  ++ V++P+ +A  LRE     V CL+I   +    I+  GGF+N     +  S  
Sbjct:   124 PVALILIVVVSPSLIAWTLRESWVGAVICLVIACYLFHEHIKASGGFKNSFTQKNGISNT 183

Query:   115 LGVAFLFFFTV 125
             +G+  L  + V
Sbjct:   184 IGIVALLVYPV 194

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009744 "response to sucrose stimulus" evidence=IEP;RCA

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0009750 "response to fructose stimulus" evidence=IEP;RCA

TAIR|locus:2044641 COR413-PM1 "AT2G15970" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 47/131 (35%), Positives = 71/131 (54%)

Query:     1 MNRTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPK------TF 54
             ++RT  +++M T+LL+ Y+F S P+++F I RG+ G W+A +AV   LF+PK        
Sbjct:    62 LDRTNWKTNMLTSLLIPYIFFSLPSLIFGIFRGEIGKWIAFVAVVVQLFFPKHAREYLEL 121

Query:    55 PVARFILFVITPAWLANGLREGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYC 114
             PVA  +L V+ P  +A   R+       CL IG  ++   IR  GGFRN     +  S  
Sbjct:   122 PVALVLLAVVAPNLIAGTFRDSWIGLAICLGIGCYLLQEHIRASGGFRNAFTKANGISNT 181

Query:   115 LGVAFLFFFTV 125
             +G+  L  F V
Sbjct:   182 VGIICLVVFPV 192

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISS

GO:0009631 "cold acclimation" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0042631 "cellular response to water deprivation" evidence=IEP;RCA

GO:0005773 "vacuole" evidence=IDA

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

TAIR|locus:2077982 COR413-PM2 "AT3G50830" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 47/131 (35%), Positives = 70/131 (53%)

Query:     1 MNRTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTFPV---- 56
             ++RT  ++ M T+LL+ Y+F S P+V+F  L G  G W+A +AV   LF+PK FP     
Sbjct:    65 LDRTNWKTKMLTSLLIPYIFLSLPSVIFNFLSGDVGKWIAFVAVVLRLFFPKHFPDWLEM 124

Query:    57 --ARFILFVITPAWLANGLREGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYC 114
               +  +L V++P +LA+ +R      V  L IG  ++   IR  GGFRN        S  
Sbjct:   125 PGSLILLLVVSPHFLAHHIRGTWIGTVISLFIGCYLLQEHIRASGGFRNSFTQPRGVSNT 184

Query:   115 LGVAFLFFFTV 125
             LG+  L  + V
Sbjct:   185 LGIILLLVYPV 195

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2049003 AT2G23680 "AT2G23680" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 38/124 (30%), Positives = 64/124 (51%)

Query:     8 SHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTF------PVARFIL 61
             +++  +LL  YLF+S P V+F++LR   G W+A L V   LF P  F      P A  +L
Sbjct:    54 NNIMASLLAPYLFSSLPIVIFQVLRNGVGKWIALLTVILRLFLPNHFHESLEIPGATILL 113

Query:    62 FVITPAWLANGLREGI--AAGVYCLIIGVLVIITEIRGIGGFRNC--ECNLHSFSYCLGV 117
              V+TP+ +    R+ +    G  CL+    +I    +  GG +N   + +  ++S CL +
Sbjct:   114 IVVTPSDIGAIFRDDLRYTGGDVCLLTSFYLINKHTKACGGIKNSFTQKDKVTYSICLWI 173

Query:   118 AFLF 121
              F++
Sbjct:   174 LFVY 177


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.337   0.149   0.501    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      130       130   0.00091  102 3  11 21  0.38    30
                                                     29  0.42    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  546 (58 KB)
  Total size of DFA:  130 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.87u 0.12s 11.99t   Elapsed:  00:00:01
  Total cpu time:  11.87u 0.12s 11.99t   Elapsed:  00:00:01
  Start:  Fri May 10 07:49:49 2013   End:  Fri May 10 07:49:50 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	130
pfam05562	186	pfam05562, WCOR413, Cold acclimation protein WCOR4	1e-17

>gnl|CDD|191305 pfam05562, WCOR413, Cold acclimation protein WCOR413

 Score = 73.9 bits (182), Expect = 1e-17
 Identities = 42/107 (39%), Positives = 64/107 (59%), Gaps = 6/107 (5%)

Query: 3   RTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTFP------V 56
           RT  ++++ T+LLV Y+F S P+V+F  +RG+ G W+A +AV   LF+P+ FP       
Sbjct: 62  RTNWKTNILTSLLVPYIFLSLPSVIFSWIRGEVGKWIAFIAVIVRLFFPRHFPGELELPG 121

Query: 57  ARFILFVITPAWLANGLREGIAAGVYCLIIGVLVIITEIRGIGGFRN 103
           A  +L V+ P+ +A+  R      V CL+IG  ++   IR  GGFRN
Sbjct: 122 ALILLVVVAPSLIASTFRGSQIGVVICLVIGCYLLQEHIRASGGFRN 168

This family consists of several WCOR413-like plant cold acclimation proteins. Length = 186

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
PF05562	187	WCOR413: Cold acclimation protein WCOR413; InterPr	100.0

>PF05562 WCOR413: Cold acclimation protein WCOR413; InterPro: IPR008892 This family consists of several WCOR413-like plant cold acclimation proteins

Probab=100.00  E-value=2.2e-65  Score=405.95  Aligned_cols=121  Identities=39%  Similarity=0.748  Sum_probs=118.2

Q ss_pred             CCccccccchhhHHHHHHHHhhchhhhHhHhcccchhHHHHHHHHHHHhcCCCCch------hhhhHhhcChhHHHhhhh
Q 032918            1 MNRTGRRSHMQTNLLVLYLFTSFPTVLFKILRGQFGCWVACLAVGANLFYPKTFPV------ARFILFVITPAWLANGLR   74 (130)
Q Consensus         1 ldrtnwkT~i~tslLVPyi~lslP~~if~~~rGe~G~WiAFlavv~RLFfp~~fP~------a~iLLivvaP~~~~~~~R   74 (130)
                      +|||||||||+|||||||+|+|+|+++|||+|||||+||||+|+++|||||+||||      +++||+||||+++|+++|
T Consensus        61 ldrtnwkTniltslLVPyi~lslPs~if~~~rGe~G~WiAFlavv~RLFfp~~fP~~LElP~a~iLLivvaP~~~~~~~R  140 (187)
T PF05562_consen   61 LDRTNWKTNILTSLLVPYIFLSLPSVIFNWFRGEYGKWIAFLAVVLRLFFPRHFPGELELPGALILLIVVAPSQIANTFR  140 (187)
T ss_pred             ccCccchhhhhHHHHHHHHHHhCcHHHHHHHhccccHHHHHHHHHHHHhCcccCCchhhcchhhheeeEeCchHHHHhcc
Confidence            69999999999999999999999999999999999999999999999999999996      999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhcCCcchhhhccCcchhhHHHHHHH
Q 032918           75 EGIAAGVYCLIIGVLVIITEIRGIGGFRNCECNLHSFSYCLGVAFLF  121 (130)
Q Consensus        75 ~~~~G~vi~L~I~~YLl~qHi~~~GG~r~aF~q~~~i~~Ti~Ii~L~  121 (130)
                      |+|+|++|||+|||||+|||||++||+||||+|+|||+||+||++++
T Consensus       141 ~~~~G~vi~l~I~~YLl~qHi~~~Gg~r~aF~~~~gis~t~~I~ll~  187 (187)
T PF05562_consen  141 GSQIGAVICLAIACYLLQQHIRASGGFRNAFTQGSGISNTIGIILLF  187 (187)
T ss_pred             CCeeehhHHHHHHHHHHHHHHHhcCChhhhhhcccccceeeEEEEeC
Confidence            99999999999999999999999999999999999999999998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00