Citrus Sinensis ID: 032942

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
MEEITEGVNNMNLAVDANKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIMTSTVDMRDESRGRPVQKAKIEIWLEKTANFDELMAAAAEERDVGDGEEQS
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEEccccccHHHHHHHHHHHHcccEEEEEEcHHHHHHHHHHHHHHHcccEEEEEEEEEcEEEcccccccccccccEEEEEEEEcccHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccEEEEcccccccEHHHHHHHHHHHHcccEEHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEcccccccccccccEEEEEEEccccHHHHHHHHHHcccccccHHcc
Coil and Loop (DISEMBL)
meeitegvnnmnlavdankknriqvsntkkplFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIMTSTvdmrdesrgrpvqkAKIEIWLEKTANFDELMAAAAEerdvgdgeeqs
Flexible Loop (DISEMBL)
meeitegvnnmnlavdankknriqvsntkkpLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILknnglavekkimtstvdmrdesrgrpvqkakIEIWLEKTANFDELMAAAAEerdvgdgeeqs
Low Complexity Region (SEG)
MEEITEGVNNMNLAVDANKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIMTSTVDMRDESRGRPVQKAKIEIWLEKTANFDELMAAAAEERDVGDGEEQS
Disordered region (IsUnstruct)
**********************IQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIMT****************AKIEIWLEKTANFDE******************
Disordered Region (DISOPRED)
***************************TKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIMT*****************KIEIWLEKTANF********************
Disordered Region (DISEMBL)
MEEITEGVNNMNLAVDANKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIMTSTV***********QKAKIEIWLEKTANFDELMAAA*************
Disordered Region (DISPRO)
*****************NKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIMTSTVDMRDESRGRPVQKAKIEIWLEKTANFDELMAAAA************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEEITEGVNNMNLAVDANKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIMTSTVDMRDESRGRPVQKAKIEIWLEKTANFDELMAAAAEERDVGDGEEQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
O22969	130	Uncharacterized protein A	yes	no	0.976	0.976	0.813	8e-55

>sp|O22969|Y2416_ARATH Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1

 Score =  211 bits (538), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 105/129 (81%), Positives = 116/129 (89%), Gaps = 2/129 (1%)

Query: 1   MEEITEGVNNMNLAVDANKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIAT 60
           MEEIT+GVNNMNLA D+ KKNRIQVSNTKKPLFFYVNLAKRYMQQ+N+VELSALGMAIAT
Sbjct: 1   MEEITDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKIMTSTVDMRDESRGRPVQKAKIEIWLEKTANFDELMAAAAEE 120
           VVTV EILKNNG AVEKKIMTSTVD++D++RGRPVQKAKIEI L K+  FDELMAAA EE
Sbjct: 61  VVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEE 120

Query: 121 RDVGDGEEQ 129
           ++  D E Q
Sbjct: 121 KE--DAEAQ 127

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
255566979	130	conserved hypothetical protein [Ricinus	1.0	1.0	0.907	2e-61
449443097	131	PREDICTED: uncharacterized protein At2g3	1.0	0.992	0.832	1e-55
225445462	130	PREDICTED: uncharacterized protein At2g3	0.984	0.984	0.891	2e-54
225443021	129	PREDICTED: uncharacterized protein At2g3	0.992	1.0	0.884	8e-54
351723721	131	uncharacterized protein LOC100527472 [Gl	0.992	0.984	0.839	4e-53
18403464	130	Alba DNA/RNA-binding protein [Arabidopsi	0.976	0.976	0.813	6e-53
359476873	190	PREDICTED: uncharacterized protein At2g3	0.923	0.631	0.859	2e-52
255548958	128	conserved hypothetical protein [Ricinus	0.984	1.0	0.815	3e-52
351721077	133	uncharacterized protein LOC100527358 [Gl	0.976	0.954	0.814	9e-52
297823195	130	nucleic acid binding protein [Arabidopsi	0.876	0.876	0.877	1e-51

>gi|255566979|ref|XP_002524472.1| conserved hypothetical protein [Ricinus communis] gi|223536260|gb|EEF37912.1| conserved hypothetical protein [Ricinus communis]

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 118/130 (90%), Positives = 124/130 (95%)

Query: 1   MEEITEGVNNMNLAVDANKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIAT 60
           MEEITEGVNN+NLA D +KKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIAT
Sbjct: 1   MEEITEGVNNINLAGDLHKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKIMTSTVDMRDESRGRPVQKAKIEIWLEKTANFDELMAAAAEE 120
           VVTVAEILKNNGLA+E+KIMTSTVDM+DESRGRPVQKAKIEI L KT NFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLAIERKIMTSTVDMKDESRGRPVQKAKIEILLGKTENFDELMAAAAEE 120

Query: 121 RDVGDGEEQS 130
           RD+ DGEEQS
Sbjct: 121 RDIVDGEEQS 130

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443097|ref|XP_004139317.1| PREDICTED: uncharacterized protein At2g34160-like [Cucumis sativus] gi|449493620|ref|XP_004159379.1| PREDICTED: uncharacterized protein At2g34160-like [Cucumis sativus]

 Score =  220 bits (560), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 109/131 (83%), Positives = 122/131 (93%), Gaps = 1/131 (0%)

Query: 1   MEEITEGVNNMNLAVDANKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIAT 60
           MEEI EGVN++NL+ D+ KKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIAT
Sbjct: 1   MEEIVEGVNSINLSSDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKIMTSTVDMRDESRGRPVQKAKIEIWLEKTANFDELMAAAAEE 120
           VVTVAEILKNNGLA+EKKI TSTVD++D+SRGRPVQKAKIEI L KT NFDELMAAAAEE
Sbjct: 61  VVTVAEILKNNGLALEKKIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEE 120

Query: 121 R-DVGDGEEQS 130
           R ++G+ +EQS
Sbjct: 121 RGEIGEADEQS 131

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445462|ref|XP_002285115.1| PREDICTED: uncharacterized protein At2g34160 [Vitis vinifera] gi|297738936|emb|CBI28181.3| unnamed protein product [Vitis vinifera]

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 115/129 (89%), Positives = 123/129 (95%), Gaps = 1/129 (0%)

Query: 1   MEEITEGVNNMNLAVDANKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIAT 60
           MEEITEGVN+MN+A D++KKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIAT
Sbjct: 1   MEEITEGVNSMNIA-DSHKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIAT 59

Query: 61  VVTVAEILKNNGLAVEKKIMTSTVDMRDESRGRPVQKAKIEIWLEKTANFDELMAAAAEE 120
           VVT+AEILKNNGLAVEKKIMTSTVDM+DESRGRP+QKAKIEI L KT NFDELMAAAAEE
Sbjct: 60  VVTIAEILKNNGLAVEKKIMTSTVDMKDESRGRPIQKAKIEILLGKTENFDELMAAAAEE 119

Query: 121 RDVGDGEEQ 129
           R+ GD EEQ
Sbjct: 120 REAGDVEEQ 128

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443021|ref|XP_002270136.1| PREDICTED: uncharacterized protein At2g34160 [Vitis vinifera] gi|297743423|emb|CBI36290.3| unnamed protein product [Vitis vinifera]

 Score =  214 bits (546), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 115/130 (88%), Positives = 122/130 (93%), Gaps = 1/130 (0%)

Query: 1   MEEITEGVNNMNLAVDANKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIAT 60
           MEEITE VNN+N++ D +KKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIAT
Sbjct: 1   MEEITEAVNNINIS-DLHKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIAT 59

Query: 61  VVTVAEILKNNGLAVEKKIMTSTVDMRDESRGRPVQKAKIEIWLEKTANFDELMAAAAEE 120
           VVT+AEILKNNGLAVEKKI TSTVDM+DESRGRPVQKAKIEI L KTANFDELMAAAAEE
Sbjct: 60  VVTIAEILKNNGLAVEKKITTSTVDMKDESRGRPVQKAKIEILLGKTANFDELMAAAAEE 119

Query: 121 RDVGDGEEQS 130
           R+ GD EEQS
Sbjct: 120 REAGDVEEQS 129

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723721|ref|NP_001236521.1| uncharacterized protein LOC100527472 [Glycine max] gi|255632428|gb|ACU16564.1| unknown [Glycine max]

 Score =  212 bits (539), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 110/131 (83%), Positives = 121/131 (92%), Gaps = 2/131 (1%)

Query: 1   MEEITEGVNNMNLAVDANKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIAT 60
           ME+ITEGVNN+N++ D+ KKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIAT
Sbjct: 1   MEDITEGVNNINIS-DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 59

Query: 61  VVTVAEILKNNGLAVEKKIMTSTVDMRDESRGRPVQKAKIEIWLEKTANFDELM-AAAAE 119
           VVTVAEILKNN LAVEKKI TSTVD++D+SRGRPVQKAKIEI L KTANFDELM AAAAE
Sbjct: 60  VVTVAEILKNNRLAVEKKIRTSTVDIKDDSRGRPVQKAKIEIVLGKTANFDELMAAAAAE 119

Query: 120 ERDVGDGEEQS 130
           + + GD EEQS
Sbjct: 120 DGENGDVEEQS 130

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403464|ref|NP_565781.1| Alba DNA/RNA-binding protein [Arabidopsis thaliana] gi|73921087|sp|O22969.1|Y2416_ARATH RecName: Full=Uncharacterized protein At2g34160 gi|2342735|gb|AAB67633.1| expressed protein [Arabidopsis thaliana] gi|21536653|gb|AAM60985.1| unknown [Arabidopsis thaliana] gi|26450089|dbj|BAC42164.1| unknown protein [Arabidopsis thaliana] gi|111074476|gb|ABH04611.1| At2g34160 [Arabidopsis thaliana] gi|330253832|gb|AEC08926.1| Alba DNA/RNA-binding protein [Arabidopsis thaliana]

 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 105/129 (81%), Positives = 116/129 (89%), Gaps = 2/129 (1%)

Query: 1   MEEITEGVNNMNLAVDANKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIAT 60
           MEEIT+GVNNMNLA D+ KKNRIQVSNTKKPLFFYVNLAKRYMQQ+N+VELSALGMAIAT
Sbjct: 1   MEEITDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKIMTSTVDMRDESRGRPVQKAKIEIWLEKTANFDELMAAAAEE 120
           VVTV EILKNNG AVEKKIMTSTVD++D++RGRPVQKAKIEI L K+  FDELMAAA EE
Sbjct: 61  VVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEE 120

Query: 121 RDVGDGEEQ 129
           ++  D E Q
Sbjct: 121 KE--DAEAQ 127

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476873|ref|XP_002264067.2| PREDICTED: uncharacterized protein At2g34160-like [Vitis vinifera]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 104/121 (85%), Positives = 115/121 (95%), Gaps = 1/121 (0%)

Query: 1   MEEITEGVNNMNLAVDANKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIAT 60
           +EEIT+GVNNMN+A D++KKN+IQVSNTKKPLFFYVNLAKR+MQQHNEVELSALGMAIAT
Sbjct: 48  VEEITKGVNNMNIA-DSHKKNQIQVSNTKKPLFFYVNLAKRHMQQHNEVELSALGMAIAT 106

Query: 61  VVTVAEILKNNGLAVEKKIMTSTVDMRDESRGRPVQKAKIEIWLEKTANFDELMAAAAEE 120
           VVT+AEILKNNGL VEKKIMTSTVDM+DESRGRP+QK KIEI L KT NFDELMAAAAEE
Sbjct: 107 VVTIAEILKNNGLVVEKKIMTSTVDMKDESRGRPIQKTKIEILLGKTENFDELMAAAAEE 166

Query: 121 R 121
           +
Sbjct: 167 K 167

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548958|ref|XP_002515535.1| conserved hypothetical protein [Ricinus communis] gi|223545479|gb|EEF46984.1| conserved hypothetical protein [Ricinus communis]

 Score =  209 bits (531), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 106/130 (81%), Positives = 114/130 (87%), Gaps = 2/130 (1%)

Query: 1   MEEITEGVNNMNLAVDANKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIAT 60
           ME +TEGVNNMN+   +NKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIAT
Sbjct: 1   MEAVTEGVNNMNINDASNKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKIMTSTVDMRDESRGRPVQKAKIEIWLEKTANFDELMAAAAEE 120
           VVT+AEILKNNGLA+EKKIMTSTVDMR+++ GRPV KAKIEI L KT  FDELMAAA EE
Sbjct: 61  VVTIAEILKNNGLAIEKKIMTSTVDMREDTGGRPVPKAKIEILLGKTEKFDELMAAATEE 120

Query: 121 RDVGDGEEQS 130
               D EEQS
Sbjct: 121 GT--DSEEQS 128

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721077|ref|NP_001238733.1| uncharacterized protein LOC100527358 [Glycine max] gi|255632167|gb|ACU16443.1| unknown [Glycine max]

 Score =  207 bits (528), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 110/135 (81%), Positives = 118/135 (87%), Gaps = 8/135 (5%)

Query: 1   MEEITEGVNNMNLAV-DANKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIA 59
           ME ITEGVNN+N+ + D+ KKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIA
Sbjct: 1   MEGITEGVNNININISDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIA 60

Query: 60  TVVTVAEILKNNGLAVEKKIMTSTVDMRDESRGRPVQKAKIEIWLEKTANFDELMAAAA- 118
           TVVTVAEILKNNGL VEKKI TSTVD++D+SRGRPVQKAKIEI L KT NFDELMAAAA 
Sbjct: 61  TVVTVAEILKNNGLTVEKKITTSTVDIKDDSRGRPVQKAKIEIVLGKTENFDELMAAAAA 120

Query: 119 ---EERDVGDGEEQS 130
              E RDV   EEQS
Sbjct: 121 EDGENRDV---EEQS 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823195|ref|XP_002879480.1| nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata] gi|297325319|gb|EFH55739.1| nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 100/114 (87%), Positives = 108/114 (94%)

Query: 1   MEEITEGVNNMNLAVDANKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIAT 60
           MEEIT+GVNNMNLAVD+ KKNRIQVSNTKKPLFFYVNLAKRYMQQ+N+VELSALGMAIAT
Sbjct: 1   MEEITDGVNNMNLAVDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKKIMTSTVDMRDESRGRPVQKAKIEIWLEKTANFDELM 114
           VVTVAEILKNNG AVEKKIMTSTVD++D+SRGRPVQKAKIEI L K+  FDELM
Sbjct: 61  VVTVAEILKNNGFAVEKKIMTSTVDIKDDSRGRPVQKAKIEITLAKSEKFDELM 114

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
TAIR|locus:2029949	130	AT1G29250 [Arabidopsis thalian	1.0	1.0	0.823	1.9e-51
TAIR|locus:2055516	130	AT2G34160 [Arabidopsis thalian	1.0	1.0	0.792	1.5e-49
TAIR|locus:2084873	164	DAN1 "D NUCLDUO1-ACTIVATEEIC A	0.769	0.609	0.77	2.7e-36

TAIR|locus:2029949 AT1G29250 [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 107/130 (82%), Positives = 118/130 (90%)

Query:     1 MEEITEGVNNMNLAVDANKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIAT 60
             MEEITEGVNNMNLAVD  KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGMAIAT
Sbjct:     1 MEEITEGVNNMNLAVDTQKKNRIQVSNTKKPLFFYVNLAKRYMQQYTDVELSALGMAIAT 60

Query:    61 VVTVAEILKNNGLAVEKKIMTSTVDMRDESRGRPVQKAKIEIWLEKTANFDELMAAAAEE 120
             VVTVAEILKNNG AVEKKIMTSTVD++D+SRGRPVQKAKIEI L K+  FDELMAAA EE
Sbjct:    61 VVTVAEILKNNGFAVEKKIMTSTVDIKDDSRGRPVQKAKIEITLAKSEKFDELMAAANEE 120

Query:   121 RDVGDGEEQS 130
             ++  + +EQ+
Sbjct:   121 KEAAEAQEQN 130

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2055516 AT2G34160 [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 103/130 (79%), Positives = 117/130 (90%)

Query:     1 MEEITEGVNNMNLAVDANKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIAT 60
             MEEIT+GVNNMNLA D+ KKNRIQVSNTKKPLFFYVNLAKRYMQQ+N+VELSALGMAIAT
Sbjct:     1 MEEITDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIAT 60

Query:    61 VVTVAEILKNNGLAVEKKIMTSTVDMRDESRGRPVQKAKIEIWLEKTANFDELMAAAAEE 120
             VVTV EILKNNG AVEKKIMTSTVD++D++RGRPVQKAKIEI L K+  FDELMAAA EE
Sbjct:    61 VVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEE 120

Query:   121 RDVGDGEEQS 130
             ++  + + Q+
Sbjct:   121 KEDAEAQVQN 130

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2084873 DAN1 "D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 77/100 (77%), Positives = 90/100 (90%)

Query:    15 VDANKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLA 74
             V+ +KKNRIQVSNTKKPLFFYVNLAKRY+QQHNEVELSALGMAI TVVT++EILKNNGLA
Sbjct:    32 VETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILKNNGLA 91

Query:    75 VEKKIMTSTVDMRDESRGRPVQKAKIEIWLEKTANFDELM 114
              EKK++TSTV M+DE++G+ VQKAKIEI L K+  FD L+
Sbjct:    92 TEKKVLTSTVGMKDETKGKMVQKAKIEIVLGKSDKFDSLV 131


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.126   0.333    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      130       130   0.00091  102 3  10 23  0.45    31
                                                     29  0.42    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  571 (61 KB)
  Total size of DFA:  155 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.92u 0.10s 18.02t   Elapsed:  00:00:00
  Total cpu time:  17.92u 0.10s 18.02t   Elapsed:  00:00:00
  Start:  Fri May 10 08:22:12 2013   End:  Fri May 10 08:22:12 2013

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0048235 "pollen sperm cell differentiation" evidence=IEP

GO:0006302 "double-strand break repair" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O22969	Y2416_ARATH	No assigned EC number	0.8139	0.9769	0.9769	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	130
pfam01918	67	pfam01918, Alba, Alba	4e-09
TIGR00070	182	TIGR00070, hisG, ATP phosphoribosyltransferase	7e-04
PRK04015	91	PRK04015, PRK04015, DNA/RNA-binding protein albA;	7e-04
COG0040	290	COG0040, HisG, ATP phosphoribosyltransferase [Amin	0.001
COG1581	91	COG1581, Ssh10b, Archaeal DNA-binding protein [Tra	0.001

>gnl|CDD|216785 pfam01918, Alba, Alba

 Score = 49.2 bits (118), Expect = 4e-09
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 5/68 (7%)

Query: 21 NRIQVSNTKKPLFFYVNLAKRYMQQ--HNEVELSALGMAIATVVTVAEILKNNGLA--VE 76
          N I VS+ K P+  YV  A + ++    +EV L  LG AI+  V+VAEILK   L    +
Sbjct: 1  NVIYVSS-KSPIMNYVKRALKLLENGGADEVVLKGLGRAISKAVSVAEILKRRFLKGLHQ 59

Query: 77 KKIMTSTV 84
            ++TSTV
Sbjct: 60 VNVITSTV 67

Alba is a novel chromosomal protein that coats archaeal DNA without compacting it. Length = 67

>gnl|CDD|232809 TIGR00070, hisG, ATP phosphoribosyltransferase

 Score = 37.1 bits (87), Expect = 7e-04
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 13/62 (20%)

Query: 35  YVNLAKRYMQQHNE----------VELS-ALGMA--IATVVTVAEILKNNGLAVEKKIMT 81
           Y NLA+RY ++             VEL+  LG+A  I  +V+    L+ NGL + + I+ 
Sbjct: 116 YPNLARRYFEKKGIDVEIIKLNGSVELAPLLGLADAIVDIVSTGTTLRENGLRIIEVILE 175

Query: 82  ST 83
           S+
Sbjct: 176 SS 177

Members of this family from B. subtilis, Aquifex aeolicus, and Synechocystis PCC6803 (and related taxa) lack the C-terminal third of the sequence. The sole homolog from Archaeoglobus fulgidus lacks the N-terminal 50 residues (as reported) and is otherwise atypical of the rest of the family. This model excludes the C-terminal extension [Amino acid biosynthesis, Histidine family]. Length = 182

>gnl|CDD|235199 PRK04015, PRK04015, DNA/RNA-binding protein albA; Provisional

 Score = 36.1 bits (84), Expect = 7e-04
 Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 4/81 (4%)

Query: 29  KKPLFFYVNLA--KRYMQQHNEVELSALGMAIATVVTVAEILKNNGLA-VEKKIMTSTVD 85
           KKP+  YV LA   ++ Q   EV + A G AI+  V VAEI++N  L  VE K +    +
Sbjct: 11  KKPVMNYV-LAVLTQFNQGAKEVVIKARGRAISKAVDVAEIVRNRFLPDVEIKEIKIGTE 69

Query: 86  MRDESRGRPVQKAKIEIWLEK 106
                 GR    + IEI LEK
Sbjct: 70  EVTSEDGRESNVSTIEIVLEK 90

Length = 91

>gnl|CDD|223118 COG0040, HisG, ATP phosphoribosyltransferase [Amino acid transport and metabolism]

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 13/63 (20%)

Query: 35  YVNLAKRYMQQHNE----------VELS-ALGMA--IATVVTVAEILKNNGLAVEKKIMT 81
           Y NLA++Y  +             VEL+ ALG+A  I  +V+    LK NGL   + I  
Sbjct: 123 YPNLARKYFAEKGIDVEIIKLSGSVELAPALGLADAIVDIVSTGTTLKANGLKEIEVIYD 182

Query: 82  STV 84
           S+ 
Sbjct: 183 SSA 185

Length = 290

>gnl|CDD|224497 COG1581, Ssh10b, Archaeal DNA-binding protein [Transcription]

 Score = 35.4 bits (82), Expect = 0.001
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 10/84 (11%)

Query: 29  KKPLFFYVNLA--KRYMQQHNEVELSALGMAIATVVTVAEILKNNGLA----VEKKIMTS 82
           KKP+  YV LA   ++ +  +EV + A G AI+  V VAEI++N  +      + KI T 
Sbjct: 11  KKPVMNYV-LAVLTQFNEGADEVIIKARGRAISKAVDVAEIVRNRFIPDVQIKDIKIGTE 69

Query: 83  TVDMRDESRGRPVQKAKIEIWLEK 106
            ++  D   GR    + IEI L K
Sbjct: 70  ELEGED---GRTRNVSTIEIVLAK 90

Length = 91

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
COG1581	91	Ssh10b Archaeal DNA-binding protein [Transcription	99.94
PRK04015	91	DNA/RNA-binding protein albA; Provisional	99.92
TIGR00285	87	DNA-binding protein Alba. This protein appears so	99.92
PF01918	70	Alba: Alba; InterPro: IPR002775 Members of this fa	99.53
KOG2567	179	consensus Uncharacterized conserved protein [Funct	99.29
PF12328	144	Rpp20: Rpp20 subunit of nuclear RNase MRP and P; P	98.48
PF04232	86	SpoVS: Stage V sporulation protein S (SpoVS); Inte	84.49

>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]

Probab=99.94  E-value=2.7e-26  Score=162.35  Aligned_cols=86  Identities=36%  Similarity=0.483  Sum_probs=79.4

Q ss_pred             CCccEEEEecCCCccchhHHHHH--HHhccCCEEEEeeccchHHhHHHHHHHHHhCCc--eeeeEEEeeeeEeccCCCCc
Q 032942           18 NKKNRIQVSNTKKPLFFYVNLAK--RYMQQHNEVELSALGMAIATVVTVAEILKNNGL--AVEKKIMTSTVDMRDESRGR   93 (130)
Q Consensus        18 ~~~n~I~Vs~~kkP~~~YV~lAk--~~L~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~i~kI~T~t~~i~~e~~g~   93 (130)
                      .++|+|+|+.  ||.|||| ||.  +|++|.++|+|+|+|+|||+|||+||++|+|++  +++++|+++|++++.+ +||
T Consensus         2 ~~envV~vG~--KPvmNYV-lAvlt~fn~g~~eViiKARGraIskAVDvaeivRnrf~p~v~ik~Iki~se~~~~~-~gr   77 (91)
T COG1581           2 AEENVVLVGK--KPVMNYV-LAVLTQFNEGADEVIIKARGRAISKAVDVAEIVRNRFIPDVQIKDIKIGTEELEGE-DGR   77 (91)
T ss_pred             CCccEEEEcC--cchHHHH-HHHHHHHHcCCCEEEEEecchhhHhhHhHHHHHHHhcCCCceEEEEEecceeeecC-CCc
Confidence            3569999995  9999999 999  788999999999999999999999999999998  7999999999999875 688


Q ss_pred             cceeceEEEEEEeC
Q 032942           94 PVQKAKIEIWLEKT  107 (130)
Q Consensus        94 ~~~vskIeI~L~K~  107 (130)
                      .+++|.|||+|.|.
T Consensus        78 ~~~VS~IeI~L~k~   91 (91)
T COG1581          78 TRNVSTIEIVLAKK   91 (91)
T ss_pred             eeeEEEEEEEEecC
Confidence            89999999999873

>PRK04015 DNA/RNA-binding protein albA; Provisional

Probab=99.92  E-value=4.8e-25  Score=156.89  Aligned_cols=88  Identities=36%  Similarity=0.427  Sum_probs=78.3

Q ss_pred             cCCccEEEEecCCCccchhHHHHHHHh-ccCCEEEEeeccchHHhHHHHHHHHHhCCc--eeeeEEEeeeeEeccCCCCc
Q 032942           17 ANKKNRIQVSNTKKPLFFYVNLAKRYM-QQHNEVELSALGMAIATVVTVAEILKNNGL--AVEKKIMTSTVDMRDESRGR   93 (130)
Q Consensus        17 ~~~~n~I~Vs~~kkP~~~YV~lAk~~L-~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~i~kI~T~t~~i~~e~~g~   93 (130)
                      |+.+|+|+|++  ||.|+||..+..+| ++.++|+|||||+||++||++||+||||++  +.+++|.++|+.+.++ +|+
T Consensus         1 ~~~en~i~Ig~--kpvmnYV~~~~~~l~~g~~eV~iKa~G~aIskAV~vaEilk~r~~~~v~v~~I~i~se~i~~~-~g~   77 (91)
T PRK04015          1 MAEENVVLVGK--KPVMNYVLAVLTQFNQGAKEVVIKARGRAISKAVDVAEIVRNRFLPDVEIKEIKIGTEEVTSE-DGR   77 (91)
T ss_pred             CCCCCEEEEcC--CcHHHHHHHHHHHHhCCCCeEEEEEeccccchhhhHHHHHHHhccCCeEEEEEEeccEEeecC-CCc
Confidence            35689999996  79999995555544 688999999999999999999999999988  8999999999999875 688


Q ss_pred             cceeceEEEEEEeC
Q 032942           94 PVQKAKIEIWLEKT  107 (130)
Q Consensus        94 ~~~vskIeI~L~K~  107 (130)
                      .+++|+|||+|+|.
T Consensus        78 ~~~VS~IEI~l~k~   91 (91)
T PRK04015         78 ESNVSTIEIVLEKK   91 (91)
T ss_pred             EEEEEEEEEEEecC
Confidence            88999999999974

>TIGR00285 DNA-binding protein Alba

Probab=99.92  E-value=6e-25  Score=155.30  Aligned_cols=83  Identities=40%  Similarity=0.521  Sum_probs=75.6

Q ss_pred             ccEEEEecCCCccchhHHHHH--HHhccCCEEEEeeccchHHhHHHHHHHHHhCCc--eeeeEEEeeeeEeccCCCCccc
Q 032942           20 KNRIQVSNTKKPLFFYVNLAK--RYMQQHNEVELSALGMAIATVVTVAEILKNNGL--AVEKKIMTSTVDMRDESRGRPV   95 (130)
Q Consensus        20 ~n~I~Vs~~kkP~~~YV~lAk--~~L~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~i~kI~T~t~~i~~e~~g~~~   95 (130)
                      +|+|+|+.  ||.|+|| +|.  +|++|.++|.|||||+||++||++||+|++|++  +.+++|+++|+.+.++ +|+.+
T Consensus         1 e~~i~vG~--KPvmnYV-lavlt~fn~g~~eV~iKarG~aIskAVdvaeiik~r~~~~v~v~~I~i~te~~~~~-~G~~~   76 (87)
T TIGR00285         1 ENVVYIGN--KPVMNYV-LAVLTQLNSGADEVIIKARGRAISRAVDVAEIVRNRFIPDIKIKKIKIGTEEIKSE-QGREV   76 (87)
T ss_pred             CCEEEEcC--CcHHHHH-HHHHHHHhCCCCeEEEEEecchhhhHHHHHHHHHHhccCCceEEEEEeccEEeecC-CCcee
Confidence            48999996  8999999 877  677889999999999999999999999999987  5799999999998865 69999


Q ss_pred             eeceEEEEEEe
Q 032942           96 QKAKIEIWLEK  106 (130)
Q Consensus        96 ~vskIeI~L~K  106 (130)
                      ++|+|||+|.|
T Consensus        77 ~VStIEI~l~~   87 (87)
T TIGR00285        77 NVSTIEIVLAK   87 (87)
T ss_pred             eEEEEEEEEeC
Confidence            99999999986

This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.

>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function

Probab=99.53  E-value=4.3e-14  Score=93.71  Aligned_cols=61  Identities=39%  Similarity=0.543  Sum_probs=52.4

Q ss_pred             cEEEEecCCCccchhHHHHHHHh-----ccCCEEEEeeccchHHhHHHHHHHHHhC---CceeeeEEEee
Q 032942           21 NRIQVSNTKKPLFFYVNLAKRYM-----QQHNEVELSALGMAIATVVTVAEILKNN---GLAVEKKIMTS   82 (130)
Q Consensus        21 n~I~Vs~~kkP~~~YV~lAk~~L-----~~~~eV~LsAlG~AIs~AV~vAEiLkrr---~~a~i~kI~T~   82 (130)
                      |.|+|+. ++|.++||..+..+|     .++++|.|+|+|+||++||.+||+||++   ++.++.++..+
T Consensus         1 n~I~V~~-~~~~~~~v~~~~~~L~~~~~~~~~~V~l~g~G~aI~kaI~vaei~K~~~~~~~~qv~~~t~t   69 (70)
T PF01918_consen    1 NEIYVSS-NSPIKSYVKRALKLLEGRENGKNDEVVLKGRGKAISKAISVAEILKRRFGEGLYQVNKITST   69 (70)
T ss_dssp             SEEEE-S-TS-HHHHHHHHHHHHT-TTHTTCSEEEEEEECCHHHHHHHHHHHHHHHTSTTTEEEEEEEEE
T ss_pred             CEEEECC-CCCHHHHHHHHHHHHhhhhcCCCCEEEEEEEcHHHHHHHHHHHHHHHhhcCCCEEEEEEecc
Confidence            6899998 569999999999888     7799999999999999999999999999   56777777543

The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....

>KOG2567 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.29  E-value=4.2e-12  Score=99.27  Aligned_cols=91  Identities=26%  Similarity=0.353  Sum_probs=74.3

Q ss_pred             cCCccEEEEecCCCccchhHHHHHHHhcc--CCEEEEeeccchHHhHHHHHHHHHhC--CceeeeEEEeeee-EeccC-C
Q 032942           17 ANKKNRIQVSNTKKPLFFYVNLAKRYMQQ--HNEVELSALGMAIATVVTVAEILKNN--GLAVEKKIMTSTV-DMRDE-S   90 (130)
Q Consensus        17 ~~~~n~I~Vs~~kkP~~~YV~lAk~~L~~--~~eV~LsAlG~AIs~AV~vAEiLkrr--~~a~i~kI~T~t~-~i~~e-~   90 (130)
                      +++.|+++|..+.|-+ ||+.||..+|++  +..|++||+|+||+++|.+|||||||  ||+++++|..-+. +.+.- .
T Consensus        15 pp~a~emrV~~g~kir-N~i~~A~~~L~~~~~r~VVfsg~Grai~KTVscaEilKrRipgLhQ~t~l~~~sv~d~W~p~~   93 (179)
T KOG2567|consen   15 PPDANEMRVKSGSKIR-NLIEFATELLQKGSHRCVVFSGSGRAIVKTVSCAEILKRRIPGLHQVTRLRYTSVEDVWEPTE   93 (179)
T ss_pred             CCCcceEEEccCchHH-HHHHHHHHHhhCCCeeEEEEecCCcceeeeeeHHHHHhhhCcchhhhceeeeeehhhcccccc
Confidence            6789999999987777 999999988865  79999999999999999999999999  8889988876544 33321 1


Q ss_pred             CC-----ccceeceEEEEEEeCc
Q 032942           91 RG-----RPVQKAKIEIWLEKTA  108 (130)
Q Consensus        91 ~g-----~~~~vskIeI~L~K~~  108 (130)
                      .|     -.++||.|-|.|.+.+
T Consensus        94 eGl~pl~vtRhVp~l~IlLS~de  116 (179)
T KOG2567|consen   94 EGLEPLEVTRHVPMLHILLSLDE  116 (179)
T ss_pred             cCccceEEeeccceEEEEEeccc
Confidence            23     2457999999998853

>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B

Probab=98.48  E-value=4.5e-07  Score=69.10  Aligned_cols=67  Identities=24%  Similarity=0.370  Sum_probs=49.5

Q ss_pred             ccEEEEecCCCccchhHHHHHHHhcc---C------------------------------CEEEEeeccchHHhHHHHHH
Q 032942           20 KNRIQVSNTKKPLFFYVNLAKRYMQQ---H------------------------------NEVELSALGMAIATVVTVAE   66 (130)
Q Consensus        20 ~n~I~Vs~~kkP~~~YV~lAk~~L~~---~------------------------------~eV~LsAlG~AIs~AV~vAE   66 (130)
                      ++.|+||+ +-|+|.+|.=+.+||..   +                              .+|.|+|||+||.+|+.+|.
T Consensus         3 ~~~iyVss-~TPfmSavKRv~K~L~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~gtGkAIeKal~la~   81 (144)
T PF12328_consen    3 PKVIYVSS-KTPFMSAVKRVRKLLDKAEKRATSSVNLAKKKKSQKKKIAQLAEGSEALKSEEVTVKGTGKAIEKALSLAL   81 (144)
T ss_dssp             TTEEE--S-S--HHHHHHHHHHHHHHHHHH----------------T-------------SEEEEEEEGGGHHHHHHHHH
T ss_pred             CcEEEEec-CCchHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccCccEEEEEeccHHHHHHHHHHH
Confidence            67899998 56998888766677742   1                              69999999999999999999


Q ss_pred             HHHhCCceeeeEEEeeeeEecc
Q 032942           67 ILKNNGLAVEKKIMTSTVDMRD   88 (130)
Q Consensus        67 iLkrr~~a~i~kI~T~t~~i~~   88 (130)
                      -++++. .-...|.|+|+.+-|
T Consensus        82 ~Fq~~~-~~~V~V~TgTV~vvD  102 (144)
T PF12328_consen   82 WFQRKK-GYKVEVRTGTVEVVD  102 (144)
T ss_dssp             HHHHTT----EEEEEEEEEEEE
T ss_pred             HHhhcC-CeEEEEEeceEEEEE
Confidence            999885 456678888886543

>PF04232 SpoVS: Stage V sporulation protein S (SpoVS); InterPro: IPR007347 In Bacillus subtilis this protein interferes with sporulation at an early stage and this inhibitory effect is overcome by SpoIIB and SpoVG

Probab=84.49  E-value=3.5  Score=29.25  Aligned_cols=47  Identities=26%  Similarity=0.341  Sum_probs=31.5

Q ss_pred             cEEEEecCCCccchhHHHHH-HHhccCCEEEEeeccc-hHHhHHHHHHHHH
Q 032942           21 NRIQVSNTKKPLFFYVNLAK-RYMQQHNEVELSALGM-AIATVVTVAEILK   69 (130)
Q Consensus        21 n~I~Vs~~kkP~~~YV~lAk-~~L~~~~eV~LsAlG~-AIs~AV~vAEiLk   69 (130)
                      +++.||++.+|.. .. =|. ..+.+++.|.|.|.|- |++.||...-|-+
T Consensus         2 e~LKVSs~S~p~~-vA-gAIa~~lre~~~v~lqaiGa~AvnqAvKAIAiAR   50 (86)
T PF04232_consen    2 EVLKVSSKSNPNA-VA-GAIAGVLREGGKVELQAIGAGAVNQAVKAIAIAR   50 (86)
T ss_dssp             -EEEE-TT--HHH-HH-HHHHHHHHHTSEEEEEE-SHHHHHHHHHHHHHHH
T ss_pred             ceEEEcCCCCHHH-HH-HHHHHHHhcCCcEEEEEECHHHHHHHHHHHHHHH
Confidence            4789999778873 22 222 5667788999999998 8999988877764

SpoVS seems to play a positive role in allowing progression beyond stage V of sporulation. Null mutations in the spoVS gene block sporulation at stage V, impairing the development of heat resistance and coat assembly [].; PDB: 2EH1_B 2EK0_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	130
1vm0_A	130	X-Ray Structure Of Gene Product From Arabidopsis Th		8e-51

>pdb|1VM0|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At2g34160 Length = 130

Iteration: 1
 Score =  194 bits (494), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 98/128 (76%), Positives = 109/128 (85%), Gaps = 2/128 (1%)
Query: 2   EEITEGVNNMNLAVDANKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATV 61
           EEIT+GVNN NLA D+ KKNRIQVSNTKKPLFFYVNLAKRY QQ+N+VELSALG AIATV
Sbjct: 2   EEITDGVNNXNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYXQQYNDVELSALGXAIATV 61
Query: 62  VTVAEILKNNGLAVEKKIMTSTVDMRDESRGRPVQKAKIEIWLEKTANFDELMAAAAEER 121
           VTV EILKNNG AVEKKI TS VD++D++RGRPVQKAKIEI L K+  FDEL AAA EE+
Sbjct: 62  VTVTEILKNNGFAVEKKIXTSIVDIKDDARGRPVQKAKIEITLVKSEKFDELXAAANEEK 121
Query: 122 DVGDGEEQ 129
           +  D E Q
Sbjct: 122 E--DAETQ 127

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	130
1vm0_A	130	Unknown protein; structural genomics, protein stru	3e-50
1nh9_A	87	MJA10B, DNA-binding protein ALBA; 2.00A {Methanoca	3e-06
1nfj_A	89	ALBA, conserved hypothetical protein AF1956; SIR2,	4e-05
2bky_A	97	DNA/RNA-binding protein ALBA 1; archaeal DNA bindi	6e-05
3toe_A	91	MTH10B, DNA/RNA-binding protein ALBA; SAC10B famil	6e-05
1ve4_A	206	ATP phosphoribosyltransferase; riken structural ge	5e-04

>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A Length = 130

 Score =  155 bits (392), Expect = 3e-50
 Identities = 101/129 (78%), Positives = 115/129 (89%)

Query: 2   EEITEGVNNMNLAVDANKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATV 61
           EEIT+GVNNMNLA D+ KKNRIQVSNTKKPLFFYVNLAKRYMQQ+N+VELSALGMAIATV
Sbjct: 2   EEITDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATV 61

Query: 62  VTVAEILKNNGLAVEKKIMTSTVDMRDESRGRPVQKAKIEIWLEKTANFDELMAAAAEER 121
           VTV EILKNNG AVEKKIMTS VD++D++RGRPVQKAKIEI L K+  FDELMAAA EE+
Sbjct: 62  VTVTEILKNNGFAVEKKIMTSIVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEK 121

Query: 122 DVGDGEEQS 130
           +  + + Q+
Sbjct: 122 EDAETQVQN 130

>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1 Length = 87

 Score = 41.8 bits (98), Expect = 3e-06
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 3/81 (3%)

Query: 28  TKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKN--NGLAVEKKIMTSTVD 85
            KKP+  YV      +  ++EV + A G AI   V VAE+++N        KKI   T  
Sbjct: 8   GKKPVMNYVVAVLTQLTSNDEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDK 67

Query: 86  MRDESRGRPVQKAKIEIWLEK 106
           +++   GR V  + IEI L K
Sbjct: 68  VKNP-DGREVNVSTIEIVLAK 87

>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A* Length = 89

 Score = 38.7 bits (90), Expect = 4e-05
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 6/83 (7%)

Query: 28  TKKPLFFYVNLAKRYMQQ-HNEVELSALGMAIATVVTVAEILKN---NGLAVEKKIMTST 83
             KP+  YV      + +  +EV + A G AI+  V VAEI++N    G+ V++  + + 
Sbjct: 9   GNKPVMNYVLATLTQLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTE 68

Query: 84  VDMRDESRGRPVQKAKIEIWLEK 106
               ++ R   V  + IEI L K
Sbjct: 69  ELESEQGRRSNV--STIEIVLAK 89

>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A Length = 97

 Score = 38.4 bits (89), Expect = 6e-05
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 28  TKKPLFFYVNLAKRYMQQ-HNEVELSALGMAIATVVTVAEILKNNGLAVE---KKIMTST 83
            KKP+  YV  A   + Q  +E+ + A G AI+  V   EI++N  L  +   K+I   +
Sbjct: 15  GKKPVMNYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGS 74

Query: 84  VDMRDESRGRPVQKAKIEIWLEK 106
             +  +  GR  + + IEI + K
Sbjct: 75  QVVTSQ-DGRQSRVSTIEIAIRK 96

>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 91

 Score = 38.4 bits (89), Expect = 6e-05
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 28  TKKPLFFYVNLAKRYMQQ-HNEVELSALGMAIATVVTVAEILKN---NGLAVEKKIMTST 83
             KP+  YV      M    +EV L A G+AI+  V VAEI++N     + +E   + + 
Sbjct: 10  GNKPVMNYVLAVVTQMNGGTSEVILKARGIAISRAVDVAEIVRNRFIPDIQIENIDICTE 69

Query: 84  VDMRDESRGRPVQKAKIEIWLEK 106
             + +E     V  + IEI L K
Sbjct: 70  EIIGNEGTATNV--SAIEIQLRK 90

>1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics initiative structural genomics; 1.20A {Thermus thermophilus} SCOP: c.94.1.1 Length = 206

 Score = 37.2 bits (87), Expect = 5e-04
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 13/62 (20%)

Query: 35  YVNLAKRYMQQHNE----------VELS-ALGMA--IATVVTVAEILKNNGLAVEKKIMT 81
           Y N   R +++             +EL+   G+A  +  VV     L+  GL   + +  
Sbjct: 115 YPNFTARLLKERGWAADVVELSGNIELAAVTGLADAVVDVVQTGATLRAAGLVEVEVLAH 174

Query: 82  ST 83
           ST
Sbjct: 175 ST 176

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	130
1vm0_A	130	Unknown protein; structural genomics, protein stru	100.0
2bky_A	97	DNA/RNA-binding protein ALBA 1; archaeal DNA bindi	99.92
1nfj_A	89	ALBA, conserved hypothetical protein AF1956; SIR2,	99.91
1nh9_A	87	MJA10B, DNA-binding protein ALBA; 2.00A {Methanoca	99.91
3toe_A	91	MTH10B, DNA/RNA-binding protein ALBA; SAC10B famil	99.91
2h9u_A	102	DNA/RNA-binding protein ALBA 2; archaea, DNA bindi	99.9
2bky_X	89	DNA/RNA-binding protein ALBA 2; archaeal DNA bindi	99.86
3iab_B	140	Ribonucleases P/MRP protein subunit POP7; RNAse P,	98.35

>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A

Probab=100.00  E-value=1.8e-45  Score=274.66  Aligned_cols=129  Identities=78%  Similarity=1.052  Sum_probs=91.8

Q ss_pred             hhhhhhhcccccccccCCccEEEEecCCCccchhHHHHHHHhccCCEEEEeeccchHHhHHHHHHHHHhCCceeeeEEEe
Q 032942            2 EEITEGVNNMNLAVDANKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIMT   81 (130)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~n~I~Vs~~kkP~~~YV~lAk~~L~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~a~i~kI~T   81 (130)
                      |+|++||+||++++..+++|+|+||++|||+||||++|++||+++++|+|||||+||++||++||||||||++++++|.|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~N~I~Vs~~kkP~~nYV~~a~~~l~g~~eV~LkA~G~AIskAV~VAEiLkrr~l~~ikkI~t   81 (130)
T 1vm0_A            2 EEITDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMT   81 (130)
T ss_dssp             -----------------CTTEEECCCTTSCHHHHHHHHHHHHHHHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEE
T ss_pred             hhHhhhhhcccccCCCCCCCEEEEecCCCCceeHHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHHHhcCcceEEEEEe
Confidence            78999999999998999999999999989999999999999999999999999999999999999999999999999999


Q ss_pred             eeeEeccCCCCccceeceEEEEEEeCccHHHHHHHHHhccccCCCCcCC
Q 032942           82 STVDMRDESRGRPVQKAKIEIWLEKTANFDELMAAAAEERDVGDGEEQS  130 (130)
Q Consensus        82 ~t~~i~~e~~g~~~~vskIeI~L~K~~~Fd~~~~~~~~~~~~~~~~~~~  130 (130)
                      +|+++.++.+||++++|+|||+|.|+|+||++|+++++++++.+++||+
T Consensus        82 ~t~~i~~~~~~r~v~~skIEI~L~k~~~fd~~~~~~~~~~~~~~~~~~~  130 (130)
T 1vm0_A           82 SIVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKEDAETQVQN  130 (130)
T ss_dssp             EEEEEC------CEEEEEEEEEEEECTTHHHHHHHC-------------
T ss_pred             eeEEeccCCCCcccccceEEEEEEecCcHHHHHHHhhhhhcccccccCC
Confidence            9999988767899999999999999999999999999999999998874

>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A

Probab=99.92  E-value=2.5e-25  Score=158.37  Aligned_cols=88  Identities=28%  Similarity=0.370  Sum_probs=77.1

Q ss_pred             cCCccEEEEecCCCccchhHHHHHHHh-ccCCEEEEeeccchHHhHHHHHHHHHhCCce---eeeEEEeeeeEeccCCCC
Q 032942           17 ANKKNRIQVSNTKKPLFFYVNLAKRYM-QQHNEVELSALGMAIATVVTVAEILKNNGLA---VEKKIMTSTVDMRDESRG   92 (130)
Q Consensus        17 ~~~~n~I~Vs~~kkP~~~YV~lAk~~L-~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~a---~i~kI~T~t~~i~~e~~g   92 (130)
                      ++++|+|+|++  ||.|+||.+|..+| +|+++|+|||+|+||++||++|||||+|++.   .+++|+++|+.+.++ +|
T Consensus         6 ~~~~n~I~V~~--k~v~~YV~~a~~ll~~g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i~~e-~G   82 (97)
T 2bky_A            6 PTPSNVVLIGK--KPVMNYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTSQ-DG   82 (97)
T ss_dssp             ---CCEEECCS--SCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEET-TS
T ss_pred             CCCCCEEEEcC--cCHHHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEEecC-CC
Confidence            78899999996  89999998888666 5689999999999999999999999999874   489999999999875 68


Q ss_pred             ccceeceEEEEEEeC
Q 032942           93 RPVQKAKIEIWLEKT  107 (130)
Q Consensus        93 ~~~~vskIeI~L~K~  107 (130)
                      +.+++|.|+|.|.|.
T Consensus        83 ~~r~vS~IeI~L~k~   97 (97)
T 2bky_A           83 RQSRVSTIEIAIRKK   97 (97)
T ss_dssp             CEEEEEEEEEEEEEC
T ss_pred             cEEEeeEEEEEEEcC
Confidence            989999999999874

>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*

Probab=99.91  E-value=1.5e-24  Score=152.12  Aligned_cols=85  Identities=34%  Similarity=0.446  Sum_probs=76.3

Q ss_pred             CccEEEEecCCCccchhHHHHHHHh-ccCCEEEEeeccchHHhHHHHHHHHHhCCc--eeeeEEEeeeeEeccCCCCccc
Q 032942           19 KKNRIQVSNTKKPLFFYVNLAKRYM-QQHNEVELSALGMAIATVVTVAEILKNNGL--AVEKKIMTSTVDMRDESRGRPV   95 (130)
Q Consensus        19 ~~n~I~Vs~~kkP~~~YV~lAk~~L-~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~i~kI~T~t~~i~~e~~g~~~   95 (130)
                      .+|+|+|++  ||.|+||.+|..+| +|+++|+|||||+||++||++||+||+|++  ..+++|+++|+.+.++ +|+.+
T Consensus         2 ~~n~I~V~~--k~v~~yV~~~~~~l~~g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~i~i~s~~i~~e-~g~~r   78 (89)
T 1nfj_A            2 AEHVVYVGN--KPVMNYVLATLTQLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELESE-QGRRS   78 (89)
T ss_dssp             -CEEEECCS--SCHHHHHHHHHHHHHTTCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCCB-TTBCC
T ss_pred             CCCEEEEcC--CCHHHHHHHHHHHHhCCCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEEEEEeEEEEEcC-CCcEE
Confidence            479999996  89999998888666 568999999999999999999999999986  5779999999999876 68989


Q ss_pred             eeceEEEEEEe
Q 032942           96 QKAKIEIWLEK  106 (130)
Q Consensus        96 ~vskIeI~L~K  106 (130)
                      ++|.|+|.|.|
T Consensus        79 ~vs~IeI~L~k   89 (89)
T 1nfj_A           79 NVSTIEIVLAK   89 (89)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EeeEEEEEEEC
Confidence            99999999986

>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1

Probab=99.91  E-value=2.2e-24  Score=150.62  Aligned_cols=84  Identities=33%  Similarity=0.439  Sum_probs=69.8

Q ss_pred             ccEEEEecCCCccchhHHHHHHHhccCCEEEEeeccchHHhHHHHHHHHHhCCc--eeeeEEEeeeeEeccCCCCcccee
Q 032942           20 KNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGL--AVEKKIMTSTVDMRDESRGRPVQK   97 (130)
Q Consensus        20 ~n~I~Vs~~kkP~~~YV~lAk~~L~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~i~kI~T~t~~i~~e~~g~~~~v   97 (130)
                      +|+|+|++  ||.|+||.+|..+|+++++|.|||+|+||++||++||+||+|++  ..+++|+++|+.+.++ +|+.+++
T Consensus         2 ~n~I~V~~--k~v~~YV~~~~~~l~~g~eV~ikA~G~AIskAV~vaeilk~r~~~~l~v~~i~i~s~~i~~e-~g~~r~v   78 (87)
T 1nh9_A            2 DNVVLIGK--KPVMNYVVAVLTQLTSNDEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKNP-DGREVNV   78 (87)
T ss_dssp             CSEEEECS--SCHHHHHHHHHHHHHHCSEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC--------CCCE
T ss_pred             CCEEEEeC--cchHHHHHHHHHHhcCCCEEEEEEechHHHHHHHHHHHHHHhccCCeEEEEEEEeEEEEEcC-CCcEEEe
Confidence            69999997  59999998888666444999999999999999999999999986  5779999999998875 6888999


Q ss_pred             ceEEEEEEe
Q 032942           98 AKIEIWLEK  106 (130)
Q Consensus        98 skIeI~L~K  106 (130)
                      |.|+|.|.|
T Consensus        79 S~IeI~L~k   87 (87)
T 1nh9_A           79 STIEIVLAK   87 (87)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEEEEC
Confidence            999999986

>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.91  E-value=4.2e-24  Score=150.99  Aligned_cols=88  Identities=32%  Similarity=0.395  Sum_probs=75.4

Q ss_pred             cCCccEEEEecCCCccchhHHHHHHHh-ccCCEEEEeeccchHHhHHHHHHHHHhCCc--eeeeEEEeeeeEeccCCCCc
Q 032942           17 ANKKNRIQVSNTKKPLFFYVNLAKRYM-QQHNEVELSALGMAIATVVTVAEILKNNGL--AVEKKIMTSTVDMRDESRGR   93 (130)
Q Consensus        17 ~~~~n~I~Vs~~kkP~~~YV~lAk~~L-~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~i~kI~T~t~~i~~e~~g~   93 (130)
                      |+++|+|+|++  ||.|+||..+..+| +|.++|+|+|+|+||++||++||+||+|++  ..+++|+++|+.+.++ +|+
T Consensus         1 m~~~~vv~vg~--Kpv~~YV~~~i~~~n~g~~eV~ikA~G~aIskAVdvaei~k~R~~~~v~v~~I~I~se~~~~e-~G~   77 (91)
T 3toe_A            1 MSEENVVYIGN--KPVMNYVLAVVTQMNGGTSEVILKARGIAISRAVDVAEIVRNRFIPDIQIENIDICTEEIIGN-EGT   77 (91)
T ss_dssp             ----CCEECCS--SCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEEEECT-TSS
T ss_pred             CCccCEEEECC--CcHHHHHHHHHHHHhCCCCEEEEEEehhHHHHHHHHHHHHHHhccCCcEEEEEEeeeEEeecC-CCc
Confidence            35689999996  89999996666555 679999999999999999999999999988  8999999999998765 688


Q ss_pred             cceeceEEEEEEeC
Q 032942           94 PVQKAKIEIWLEKT  107 (130)
Q Consensus        94 ~~~vskIeI~L~K~  107 (130)
                      .+++|.|||+|.|.
T Consensus        78 ~r~VS~IeI~L~k~   91 (91)
T 3toe_A           78 ATNVSAIEIQLRKD   91 (91)
T ss_dssp             EEEEEEEEEEEEC-
T ss_pred             eeEeeEEEEEEECC
Confidence            99999999999873

>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*

Probab=99.90  E-value=1.3e-23  Score=150.78  Aligned_cols=88  Identities=26%  Similarity=0.356  Sum_probs=78.3

Q ss_pred             ccEEEEecCCCccchhHHHHH-HHh-ccCCEEEEeeccchHHhHHHHHHHHHhCCc--eeeeEEEeeeeEeccCC-CCc-
Q 032942           20 KNRIQVSNTKKPLFFYVNLAK-RYM-QQHNEVELSALGMAIATVVTVAEILKNNGL--AVEKKIMTSTVDMRDES-RGR-   93 (130)
Q Consensus        20 ~n~I~Vs~~kkP~~~YV~lAk-~~L-~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~i~kI~T~t~~i~~e~-~g~-   93 (130)
                      +|.|+|++  ||.|+||.+|. .+| +|+++|.|||||+||++||++|||||||++  ..+++|+++|+.+.++. +|+ 
T Consensus         6 ~n~I~V~~--k~~~nyV~~a~~~ll~~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~d~~e~g~~   83 (102)
T 2h9u_A            6 APEVRIGR--KPVMNYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIEVQTPEGQT   83 (102)
T ss_dssp             CCEEECCS--SCHHHHHHHHHHHHTSTTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEEEECTTSCE
T ss_pred             CCEEEEcC--CCHHHHHHHHHHHHHhCCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEeccccCCcc
Confidence            59999996  89999999998 777 558999999999999999999999999986  56799999999988641 476 


Q ss_pred             -cceeceEEEEEEeCcc
Q 032942           94 -PVQKAKIEIWLEKTAN  109 (130)
Q Consensus        94 -~~~vskIeI~L~K~~~  109 (130)
                       .+++|.|+|.|.|.|.
T Consensus        84 ~~r~vS~IeI~Lsk~~~  100 (102)
T 2h9u_A           84 RTRRVSSIEICLEKAGE  100 (102)
T ss_dssp             EEEEEEEEEEEEEECSS
T ss_pred             ceeEeeeEEEEEEccCC
Confidence             7899999999999885

>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A

Probab=99.86  E-value=8e-22  Score=138.50  Aligned_cols=83  Identities=18%  Similarity=0.051  Sum_probs=71.3

Q ss_pred             cCCccEEEEecCCCccchhHHHHHH-HhccCCEEEEeeccchHHhHHHHHHHHHhCCc--eeeeEEEeeeeEeccCCCCc
Q 032942           17 ANKKNRIQVSNTKKPLFFYVNLAKR-YMQQHNEVELSALGMAIATVVTVAEILKNNGL--AVEKKIMTSTVDMRDESRGR   93 (130)
Q Consensus        17 ~~~~n~I~Vs~~kkP~~~YV~lAk~-~L~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~i~kI~T~t~~i~~e~~g~   93 (130)
                      ..++|.++|+.  ||.|+||..+.. |++|.++|.|||||+||++||++||+||+|++  +.+++|+++|+.      |+
T Consensus         3 ~~~~~iv~vg~--kpv~nYV~~~~~~ln~g~~eV~ikA~G~aIskAVdvaeilk~R~~~~~~i~~i~i~se~------~~   74 (89)
T 2bky_X            3 EKLNEIVVRKT--KNVEDHVLDVIVLFNQGIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVNVQTGSEV------RD   74 (89)
T ss_dssp             -CCEEEECCTT--SCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEEE------ET
T ss_pred             CCCCCEEEECC--CCHHHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHhccCceEEEEEEecccc------Cc
Confidence            36788888886  799999966664 44678999999999999999999999999976  799999999885      55


Q ss_pred             cceeceEEEEEEeC
Q 032942           94 PVQKAKIEIWLEKT  107 (130)
Q Consensus        94 ~~~vskIeI~L~K~  107 (130)
                      .+++|.|+|.|.|.
T Consensus        75 ~r~VS~IeI~L~k~   88 (89)
T 2bky_X           75 RRRISYILLRLKRV   88 (89)
T ss_dssp             TEEEEEEEEEEEEC
T ss_pred             ceEeeeEEEEEEec
Confidence            66899999999874

>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}

Probab=98.35  E-value=1.4e-06  Score=65.57  Aligned_cols=68  Identities=13%  Similarity=0.256  Sum_probs=53.2

Q ss_pred             CccEEEEecCCCccchhHHHHHHHhc-----cCCEEEEeeccchHHhHHHHHHHHHhCCceeeeEEEeeeeEecc
Q 032942           19 KKNRIQVSNTKKPLFFYVNLAKRYMQ-----QHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIMTSTVDMRD   88 (130)
Q Consensus        19 ~~n~I~Vs~~kkP~~~YV~lAk~~L~-----~~~eV~LsAlG~AIs~AV~vAEiLkrr~~a~i~kI~T~t~~i~~   88 (130)
                      -+|.|+|++ +-|.+.=+.=..+||.     +..+|.|+|||+||.+|+.+|--+++++- -.-.|.|+|+.+-|
T Consensus        29 ~~~~iYV~s-kTpf~S~vkRi~KlL~~~~k~~~~eV~v~GmGkAIeKal~lAl~fq~~~~-~~V~V~T~TV~vvD  101 (140)
T 3iab_B           29 IHTTIFVKS-TTPYVSALKRINKFLDSVHKQGSSYVAVLGMGKAVEKTLALGCHFQDQKN-KKIEVYTKTIEVLD  101 (140)
T ss_dssp             HTTEEECCS-SCCHHHHHHHHHHHHHHHHHHTCSEEEEEEEGGGHHHHHHHHHHHHHTTC-CCEEEEEEEEEEEE
T ss_pred             cCceEEEec-CCchHHHHHHHHHHHHHhhcCCCcEEEEEechHHHHHHHHHHHHHhhcCC-EEEEEEeceEEEEE
Confidence            488999998 4476654433337886     47999999999999999999999999863 44568898876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	130
d1vm0a_	99	d.68.6.2 (A:) Hypothetical protein At2g34160 {Thal	3e-40
d1nh9a_	87	d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon M	7e-19
d1nfja_	87	d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon A	5e-16
d2bkya1	89	d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archae	3e-06
d2bkyx1	86	d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archae	2e-05

>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 99

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: Hypothetical protein At2g34160
domain: Hypothetical protein At2g34160
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  128 bits (322), Expect = 3e-40
 Identities = 85/99 (85%), Positives = 92/99 (92%)

Query: 19  KKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKK 78
           KKNRIQVSNTKKPLFFYVNLAKRYMQQ+N+VELSALGMAIATVVTV EILKNNG AVEKK
Sbjct: 1   KKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKK 60

Query: 79  IMTSTVDMRDESRGRPVQKAKIEIWLEKTANFDELMAAA 117
           IMTS VD++D++RGRPVQKAKIEI L K+  FDELMAAA
Sbjct: 61  IMTSIVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAA 99

>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 87

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 73.2 bits (180), Expect = 7e-19
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 28  TKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKN---NGLAVEKKIMTSTV 84
            KKP+  YV      +  ++EV + A G AI   V VAE+++N     + ++K  + +  
Sbjct: 8   GKKPVMNYVVAVLTQLTSNDEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDK 67

Query: 85  DMRDESRGRPVQKAKIEIWLEK 106
               + R   V  + IEI L K
Sbjct: 68  VKNPDGREVNV--STIEIVLAK 87

>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 87

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 65.9 bits (161), Expect = 5e-16
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 6/83 (7%)

Query: 28  TKKPLFFYVNLAKRYMQQ-HNEVELSALGMAIATVVTVAEILKN---NGLAVEKKIMTST 83
             KP+  YV      + +  +EV + A G AI+  V VAEI++N    G+ V++  + + 
Sbjct: 7   GNKPVMNYVLATLTQLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTE 66

Query: 84  VDMRDESRGRPVQKAKIEIWLEK 106
               ++ R   V  + IEI L K
Sbjct: 67  ELESEQGRRSNV--STIEIVLAK 87

>d2bkya1 d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]} Length = 89

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]

 Score = 40.5 bits (95), Expect = 3e-06
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 28  TKKPLFFYVNLAKRYMQQ-HNEVELSALGMAIATVVTVAEILKNNGLAVE---KKIMTST 83
            KKP+  YV  A   + Q  +E+ + A G AI+  V   EI++N  L  +   K+I   +
Sbjct: 7   GKKPVMNYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGS 66

Query: 84  VDMRDESRGRPVQKAKIEIWLEK 106
             +  +  GR  + + IEI + K
Sbjct: 67  QVVTSQ-DGRQSRVSTIEIAIRK 88

>d2bkyx1 d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]} Length = 86

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]

 Score = 38.6 bits (90), Expect = 2e-05
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 10/91 (10%)

Query: 19  KKNRIQVSNTKKPLFFYVNLAKRYMQQ-HNEVELSALGMAIATVVTVAEILKN--NGLAV 75
           K N I V    K +  +V        Q  +EV L   G  I+  V V   LK+       
Sbjct: 1   KLNEIVVR-KTKNVEDHVLDVIVLFNQGIDEVILKGTGREISKAVDVYNSLKDRLGDGVQ 59

Query: 76  EKKIMTSTVDMRDESRGRPVQKAKIEIWLEK 106
              + T +    +    R +  + I + L++
Sbjct: 60  LVNVQTGS----EVRDRRRI--SYILLRLKR 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	130
d1vm0a_	99	Hypothetical protein At2g34160 {Thale cress (Arabi	100.0
d1nh9a_	87	DNA-binding protein AlbA {Archaeon Methanococcus j	99.92
d1nfja_	87	DNA-binding protein AlbA {Archaeon Archaeoglobus f	99.92
d2bkya1	89	DNA-binding protein AlbA {Archaeon Sulfolobus solf	99.89
d2bkyx1	86	DNA-binding protein AlbA {Archaeon Sulfolobus solf	99.86

>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: Hypothetical protein At2g34160
domain: Hypothetical protein At2g34160
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.7e-37  Score=219.03  Aligned_cols=98  Identities=86%  Similarity=1.139  Sum_probs=89.5

Q ss_pred             CccEEEEecCCCccchhHHHHHHHhccCCEEEEeeccchHHhHHHHHHHHHhCCceeeeEEEeeeeEeccCCCCccceec
Q 032942           19 KKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGLAVEKKIMTSTVDMRDESRGRPVQKA   98 (130)
Q Consensus        19 ~~n~I~Vs~~kkP~~~YV~lAk~~L~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~a~i~kI~T~t~~i~~e~~g~~~~vs   98 (130)
                      ++|+|+||++|||.||||++|+.||+++++|+|||||+||++||++||+|+|||++++++|+|+|+++.++++|+++++|
T Consensus         1 k~n~i~vs~~KkP~~~YV~~a~~~l~~~~eV~l~a~G~AI~~aV~vaeil~~r~~~~i~~I~t~s~~~~~~~~gr~~~vs   80 (99)
T d1vm0a_           1 KKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDDARGRPVQKA   80 (99)
T ss_dssp             CTTEEECCCTTSCHHHHHHHHHHHHHHHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC------CEEEE
T ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEecHHHHHHHHHHHHHHHhcCceEEEEEEeeeEEeecCCCCcccccc
Confidence            47999999999999999999999999999999999999999999999999999999999999999999887789999999


Q ss_pred             eEEEEEEeCccHHHHHHH
Q 032942           99 KIEIWLEKTANFDELMAA  116 (130)
Q Consensus        99 kIeI~L~K~~~Fd~~~~~  116 (130)
                      +|||+|.|+|+||+||++
T Consensus        81 ~IEI~L~K~~~F~~~~~~   98 (99)
T d1vm0a_          81 KIEITLVKSEKFDELMAA   98 (99)
T ss_dssp             EEEEEEEECTTHHHHHHH
T ss_pred             eEEEEEeeCccHHHHhhc
Confidence            999999999999999986

>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.92  E-value=3.3e-25  Score=153.78  Aligned_cols=84  Identities=33%  Similarity=0.439  Sum_probs=69.6

Q ss_pred             ccEEEEecCCCccchhHHHHHHHhccCCEEEEeeccchHHhHHHHHHHHHhCCc--eeeeEEEeeeeEeccCCCCcccee
Q 032942           20 KNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIATVVTVAEILKNNGL--AVEKKIMTSTVDMRDESRGRPVQK   97 (130)
Q Consensus        20 ~n~I~Vs~~kkP~~~YV~lAk~~L~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~i~kI~T~t~~i~~e~~g~~~~v   97 (130)
                      +|.|+|+.  ||.|+||..+..+|+++++|+|||||+||++||+|||+++||..  +.+++|+++++.++++ +|+.+++
T Consensus         2 en~I~Ig~--KP~m~YV~~~~~~~~~~~eV~lKArG~aIsrAVdVaEiik~R~~~~~~i~~i~i~se~~~~~-~g~~r~V   78 (87)
T d1nh9a_           2 DNVVLIGK--KPVMNYVVAVLTQLTSNDEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKNP-DGREVNV   78 (87)
T ss_dssp             CSEEEECS--SCHHHHHHHHHHHHHHCSEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC--------CCCE
T ss_pred             CCEEEEcC--CCHHHHHHHHHHHhccCCeEEEEEcchhhhHHHHHHHHHHHhccCCeEEEEEEecceEEecC-CCceeEE
Confidence            78999985  89999997777767666999999999999999999999999844  7999999999988764 6888899


Q ss_pred             ceEEEEEEe
Q 032942           98 AKIEIWLEK  106 (130)
Q Consensus        98 skIeI~L~K  106 (130)
                      |+|||.|.|
T Consensus        79 S~IeI~L~k   87 (87)
T d1nh9a_          79 STIEIVLAK   87 (87)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEeC
Confidence            999999986

>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.92  E-value=5e-25  Score=152.75  Aligned_cols=84  Identities=35%  Similarity=0.453  Sum_probs=75.2

Q ss_pred             ccEEEEecCCCccchhHHHHHHHh-ccCCEEEEeeccchHHhHHHHHHHHHhCCc--eeeeEEEeeeeEeccCCCCccce
Q 032942           20 KNRIQVSNTKKPLFFYVNLAKRYM-QQHNEVELSALGMAIATVVTVAEILKNNGL--AVEKKIMTSTVDMRDESRGRPVQ   96 (130)
Q Consensus        20 ~n~I~Vs~~kkP~~~YV~lAk~~L-~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~i~kI~T~t~~i~~e~~g~~~~   96 (130)
                      +|.|+|++  ||.|+||..+..+| +|.++|+|||||+||++||++||+||||++  ..+++|.++++..+.+ +|+.++
T Consensus         1 en~I~Ig~--Kp~~~YV~~~~~~l~~g~~eV~ikArG~aIs~AVdVaEi~k~r~~~~~~i~~i~i~se~~~~e-~g~~r~   77 (87)
T d1nfja_           1 EHVVYVGN--KPVMNYVLATLTQLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELESE-QGRRSN   77 (87)
T ss_dssp             CEEEECCS--SCHHHHHHHHHHHHHTTCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCCB-TTBCCE
T ss_pred             CCEEEEcC--CcHHHHHHHHHHHHhCCCCEEEEEEehhHHHHHHHHHHHHHHhccCCcEEEEEEEccEEEecC-CCceeE
Confidence            68999996  89999998888666 578999999999999999999999999855  6899999999988765 688889


Q ss_pred             eceEEEEEEe
Q 032942           97 KAKIEIWLEK  106 (130)
Q Consensus        97 vskIeI~L~K  106 (130)
                      +|+|||.|.|
T Consensus        78 VS~IeI~L~K   87 (87)
T d1nfja_          78 VSTIEIVLAK   87 (87)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEeC
Confidence            9999999986

>d2bkya1 d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]

Probab=99.89  E-value=1.7e-23  Score=145.60  Aligned_cols=85  Identities=29%  Similarity=0.378  Sum_probs=74.6

Q ss_pred             ccEEEEecCCCccchhHHHHHHHh-ccCCEEEEeeccchHHhHHHHHHHHHhCCc---eeeeEEEeeeeEeccCCCCccc
Q 032942           20 KNRIQVSNTKKPLFFYVNLAKRYM-QQHNEVELSALGMAIATVVTVAEILKNNGL---AVEKKIMTSTVDMRDESRGRPV   95 (130)
Q Consensus        20 ~n~I~Vs~~kkP~~~YV~lAk~~L-~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~---a~i~kI~T~t~~i~~e~~g~~~   95 (130)
                      .|.|+|+.  ||.|+||..+..+| +|.++|.|+|||+||++||++||++++|++   ..+.+|.++++.++++ +|+.+
T Consensus         1 ~n~I~IG~--Kp~mnYV~a~~~~l~~g~~~V~iKArG~aIskAVdVaEiik~R~l~~~~~i~~i~I~se~~~~~-~G~~r   77 (89)
T d2bkya1           1 SNVVLIGK--KPVMNYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTSQ-DGRQS   77 (89)
T ss_dssp             CCEEECCS--SCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEET-TSCEE
T ss_pred             CCEEEECC--CcHHHHHHHHHHHHhCCCCeEEEEEehhhhHHHHHHHHHHHHhcccCceEEEEEEeccEEeecC-CCcEE
Confidence            48899995  89999996666555 568999999999999999999999999977   4789999999998765 68888


Q ss_pred             eeceEEEEEEeC
Q 032942           96 QKAKIEIWLEKT  107 (130)
Q Consensus        96 ~vskIeI~L~K~  107 (130)
                      ++|.|+|.|.|.
T Consensus        78 ~VS~IeI~L~kk   89 (89)
T d2bkya1          78 RVSTIEIAIRKK   89 (89)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             EEEEEEEEEEcC
Confidence            999999999983

>d2bkyx1 d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]

Probab=99.86  E-value=3.3e-22  Score=138.42  Aligned_cols=81  Identities=22%  Similarity=0.090  Sum_probs=69.7

Q ss_pred             ccEEEEecCCCccchhHHHHHHHh-ccCCEEEEeeccchHHhHHHHHHHHHhCCc--eeeeEEEeeeeEeccCCCCccce
Q 032942           20 KNRIQVSNTKKPLFFYVNLAKRYM-QQHNEVELSALGMAIATVVTVAEILKNNGL--AVEKKIMTSTVDMRDESRGRPVQ   96 (130)
Q Consensus        20 ~n~I~Vs~~kkP~~~YV~lAk~~L-~~~~eV~LsAlG~AIs~AV~vAEiLkrr~~--a~i~kI~T~t~~i~~e~~g~~~~   96 (130)
                      .|.|++.. +||.|+||..|..+| +|.++|+|+|+|+|||+||++||++++|+.  +.+++|.++|++      |+.++
T Consensus         2 ~nei~~~~-~kp~~nYV~a~i~~f~~g~~eV~iKArG~aIskAVdVaEiir~R~~~~v~i~~I~i~sE~------~~~r~   74 (86)
T d2bkyx1           2 LNEIVVRK-TKNVEDHVLDVIVLFNQGIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVNVQTGSEV------RDRRR   74 (86)
T ss_dssp             CEEEECCT-TSCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEEE------ETTEE
T ss_pred             CceEEEEc-CCchHHHHHHHHHHHHCCCCEEEEEEechhhHHHHHHHHHHHHhccCCeEEEEEEecccc------CCceE
Confidence            57888887 569999996666544 789999999999999999999999999954  899999999972      55568


Q ss_pred             eceEEEEEEeC
Q 032942           97 KAKIEIWLEKT  107 (130)
Q Consensus        97 vskIeI~L~K~  107 (130)
                      +|.|||.|+|.
T Consensus        75 VS~IeI~l~k~   85 (86)
T d2bkyx1          75 ISYILLRLKRV   85 (86)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEEEEEEEEec
Confidence            99999999984