Citrus Sinensis ID: 033022

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYASLLLLVPLTLSTHTHFMKENQVVLS
Secondary Structure (PSIPRED)
ccccccccccccEEEEEcccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEEcccEEEEccccccHHccccccccEEccccccEEEEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEcccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHcEccEEEEEEccccEEccccHHHHHHHHHHccccccccHEEEEEEEEcccccHcccccccHcccEEEEc
Coil and Loop (DISEMBL)
mdglpsgyrpnvgvclinsdsqIFVASrlnvpgawqmpqggiedgedpKLAAMRELREETGIVSAEIIAEvpnwltydfppavktkvnrlwggewhgQAQKWYASLLLLVPLTLSTHTHFMKENQVVLS
Flexible Loop (DISEMBL)
mdglpsgyRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEvpnwltydfpPAVKTKVNRLWGGEWHGQAQKWYASLLLLVPLTLSTHTHFMKENQVVLS
Low Complexity Region (SEG)
MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYAsllllvpltlsththFMKENQVVLS
Disordered region (IsUnstruct)
*********PNVGVCLINSDSQIFVASRLNVPGAWQM********************EETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYASLLLLVPLTLSTHTHFM********
Disordered Region (DISOPRED)
***LPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYASLLLLVPLTLSTHTHFMKENQVVLS
Disordered Region (DISEMBL)
MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYASLLLLVPLTLSTHTHFMKENQVVLS
Disordered Region (DISPRO)
****PSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYASLLLLVPLTLSTHTHFMKENQVVLS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYASLLLLVPLTLSTHTHFMKENQVVLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	129	2.2.26 [Sep-21-2011]
Q9C6Z2	175	Nudix hydrolase 25 OS=Ara	yes	no	0.798	0.588	0.883	2e-51
Q9CAF2	216	Nudix hydrolase 26, chlor	no	no	0.798	0.476	0.650	1e-38
Q9FNH4	227	Nudix hydrolase 27, chlor	no	no	0.767	0.436	0.616	6e-34
Q2RV14	165	RNA pyrophosphohydrolase	yes	no	0.751	0.587	0.539	2e-24
B9KN59	162	RNA pyrophosphohydrolase	yes	no	0.775	0.617	0.509	1e-23
Q3IZC1	162	RNA pyrophosphohydrolase	yes	no	0.775	0.617	0.509	1e-23
A3PMX6	162	RNA pyrophosphohydrolase	yes	no	0.720	0.574	0.525	3e-23
A1B502	163	RNA pyrophosphohydrolase	yes	no	0.782	0.619	0.513	1e-22
A4WWV6	162	RNA pyrophosphohydrolase	yes	no	0.720	0.574	0.515	2e-22
Q5FU29	170	RNA pyrophosphohydrolase	yes	no	0.720	0.547	0.484	3e-22

>sp|Q9C6Z2|NUD25_ARATH Nudix hydrolase 25 OS=Arabidopsis thaliana GN=NUDT25 PE=1 SV=1

 Score =  200 bits (509), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 91/103 (88%), Positives = 98/103 (95%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           M+ LP GYRPNVGVCLINSD+ +FVASRLNVPGAWQMPQGGIEDGEDPK AAMREL+EET
Sbjct: 1   MENLPPGYRPNVGVCLINSDNLVFVASRLNVPGAWQMPQGGIEDGEDPKSAAMRELQEET 60

Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
           G+VSAEI++EVPNWLTYDFPPAVK KVNRLWGGEWHGQAQKWY
Sbjct: 61  GVVSAEIVSEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWY 103

Mediates the hydrolysis of diadenosine 5',5''-P(1)P(4) tetraphosphate (Ap(4)A), a signaling molecule involved in regulation of DNA replication and repair.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: 1EC: 7

>sp|Q9CAF2|NUD26_ARATH Nudix hydrolase 26, chloroplastic OS=Arabidopsis thaliana GN=NUDT26 PE=1 SV=1

 Score =  158 bits (399), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 67/103 (65%), Positives = 85/103 (82%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           M+  P GYR NVGVCL+NS  +IF ASRL++P AWQMPQGGI++GEDP++A MREL+EET
Sbjct: 56  MESPPEGYRRNVGVCLMNSSKKIFTASRLDIPSAWQMPQGGIDEGEDPRVAVMRELKEET 115

Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
           G+ SAEI+AE P+W+TYDFPP V+ K+   WG +W GQAQKW+
Sbjct: 116 GVHSAEILAEAPHWITYDFPPDVREKLKVRWGSDWKGQAQKWF 158

Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use diadenosine 5',5'''-P(1)P(5) pentaphosphate (Ap(5)A), diadenosine 5',5'''-P(1)P(4) tetraphosphate (Ap(4)A) and diadenosine 5',5'''-P(1)P(3) triphosphate (Ap(3)A) as substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 7

>sp|Q9FNH4|NUD27_ARATH Nudix hydrolase 27, chloroplastic OS=Arabidopsis thaliana GN=NUDT27 PE=1 SV=1

 Score =  142 bits (358), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 61/99 (61%), Positives = 77/99 (77%)

Query: 5   PSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64
           P GYR NVG+CL++   +IF AS++++P  WQMPQGG ++GED + AA RELREETG+ S
Sbjct: 59  PVGYRKNVGICLVSPCRKIFTASKIHIPDTWQMPQGGADEGEDLRNAAFRELREETGVTS 118

Query: 65  AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
           AE IAE+PNWLTYDFP  VK K+NR W   + GQAQKW+
Sbjct: 119 AEFIAEIPNWLTYDFPREVKDKLNRKWRTSYKGQAQKWF 157

Mediates the hydrolysis of some nucleoside diphosphate derivatives. Can use diadenosine 5',5'''-P(1)P(5) pentaphosphate (Ap(5)A) as substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q2RV14|RPPH_RHORT RNA pyrophosphohydrolase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rppH PE=3 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 69/102 (67%), Gaps = 5/102 (4%)

Query: 3   GLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
           GLP  YR  VG+ LIN+  Q+FVA RL+ P AWQMPQGGI+ GEDP+ AA RE+ EE G 
Sbjct: 11  GLP--YRQGVGIMLINARGQVFVARRLDSPEAWQMPQGGIDAGEDPETAAWREMEEEIGT 68

Query: 63  VSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYA 104
            +A ++ E   WL YD P  ++    RLWGG + GQ QKW+A
Sbjct: 69  RNALLLGETAGWLGYDLPEELR---GRLWGGRFQGQRQKWFA 107

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|B9KN59|RPPH_RHOSK RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rppH PE=3 SV=1

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 74/106 (69%), Gaps = 6/106 (5%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREE 59
           +D L   YRP VG+ LIN +  IF   R++ P  AWQMPQGGI++GE P+ AA+REL EE
Sbjct: 5   IDPLTLPYRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEE 64

Query: 60  TGIVS--AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
           TGI +   E +A+ P+W+TYD PP +   + R+WGG++ GQ QKW+
Sbjct: 65  TGIPAERVEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWF 107

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Rhodobacter sphaeroides (strain KD131 / KCTC 12085) (taxid: 557760)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q3IZC1|RPPH_RHOS4 RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rppH PE=3 SV=1

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 74/106 (69%), Gaps = 6/106 (5%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREE 59
           +D L   YRP VG+ LIN +  IF   R++ P  AWQMPQGGI++GE P+ AA+REL EE
Sbjct: 5   IDPLTLPYRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEE 64

Query: 60  TGIVS--AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
           TGI +   E +A+ P+W+TYD PP +   + R+WGG++ GQ QKW+
Sbjct: 65  TGIPAERVEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWF 107

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|A3PMX6|RPPH_RHOS1 RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rppH PE=3 SV=1

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/99 (52%), Positives = 71/99 (71%), Gaps = 6/99 (6%)

Query: 8   YRPNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREETGIVS-- 64
           YRP VG+ LIN +  IF   R++ P  AWQMPQGGI++GE P+ AA+REL EETGI +  
Sbjct: 12  YRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEETGIPAER 71

Query: 65  AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
            E +A+ P+W+TYD PP +   + R+WGG++ GQ QKW+
Sbjct: 72  VEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWF 107

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) (taxid: 349101)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|A1B502|RPPH_PARDP RNA pyrophosphohydrolase OS=Paracoccus denitrificans (strain Pd 1222) GN=rppH PE=3 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/109 (51%), Positives = 70/109 (64%), Gaps = 8/109 (7%)

Query: 5   PSG--YRPNVGVCLINSDSQIFVASRLNVPG-AWQMPQGGIEDGEDPKLAAMRELREETG 61
           PSG  YRP  GV LIN    +F   R++ PG AWQMPQGGI+ GE P+ AA+REL EETG
Sbjct: 8   PSGLPYRPCAGVVLINPVGLVFAGQRIDNPGPAWQMPQGGIDRGESPREAALRELVEETG 67

Query: 62  IVS--AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYASLLL 108
           +     +++AE P W+TYD PP +  KV   W G + GQ QKW+A   L
Sbjct: 68  VTPDLVDVLAETPGWVTYDLPPELLGKV---WKGRYGGQKQKWFAMRFL 113

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Paracoccus denitrificans (strain Pd 1222) (taxid: 318586)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|A4WWV6|RPPH_RHOS5 RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rppH PE=3 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/99 (51%), Positives = 68/99 (68%), Gaps = 6/99 (6%)

Query: 8   YRPNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREETGIVS-- 64
           YRP VG+ LIN +  IF   R++ P  AWQMPQGGI+  E P+ AA+REL+EETGI    
Sbjct: 12  YRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDADEKPRQAALRELQEETGIPEDL 71

Query: 65  AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
            E +A+ P W+TYD PP +   + R+WGG++ GQ QKW+
Sbjct: 72  VEFVAKAPEWVTYDLPPDL---LGRVWGGKYRGQRQKWF 107

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) (taxid: 349102)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q5FU29|RPPH_GLUOX RNA pyrophosphohydrolase OS=Gluconobacter oxydans (strain 621H) GN=rppH PE=3 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 67/97 (69%), Gaps = 4/97 (4%)

Query: 8   YRPNVGVCLINSDSQIFVASRLNVPG-AWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
           YRPNVG+ L N D ++F+A R ++PG  WQ PQGGI++GE P++AA+RE+ EE G  +A 
Sbjct: 9   YRPNVGIALFNRDGKLFIARRTDLPGDVWQCPQGGIDEGETPQVAALREMGEEIGTQNAR 68

Query: 67  IIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
           I+AE   WL+YD P  +   + +  GG + GQ QKW+
Sbjct: 69  ILAERSGWLSYDLPSDL---IGKALGGRFRGQTQKWF 102

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Gluconobacter oxydans (strain 621H) (taxid: 290633)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
359472870	173	PREDICTED: nudix hydrolase 25-like [Viti	0.798	0.595	0.922	4e-51
449467617	173	PREDICTED: nudix hydrolase 25-like [Cucu	0.798	0.595	0.902	5e-51
255570126	173	(Di)nucleoside polyphosphate hydrolase,	0.798	0.595	0.902	2e-50
388520493	173	unknown [Lotus japonicus]	0.798	0.595	0.912	3e-50
224101843	173	predicted protein [Populus trichocarpa]	0.798	0.595	0.912	5e-50
224108323	173	predicted protein [Populus trichocarpa]	0.798	0.595	0.902	1e-49
356530740	173	PREDICTED: nudix hydrolase 25-like [Glyc	0.798	0.595	0.902	1e-49
15220667	175	nudix hydrolase 25 [Arabidopsis thaliana	0.798	0.588	0.883	1e-49
351725143	173	uncharacterized protein LOC100306071 [Gl	0.798	0.595	0.902	2e-49
297845940	175	hypothetical protein ARALYDRAFT_473229 [	0.798	0.588	0.873	4e-49

>gi|359472870|ref|XP_002284395.2| PREDICTED: nudix hydrolase 25-like [Vitis vinifera] gi|147845365|emb|CAN79048.1| hypothetical protein VITISV_004867 [Vitis vinifera] gi|297737699|emb|CBI26900.3| unnamed protein product [Vitis vinifera]

 Score =  205 bits (522), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 95/103 (92%), Positives = 99/103 (96%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           M+GLPSGYRPNVGVCLINSD Q+FVASRLNVPGAWQMPQGGIEDGE+PK AAMRELREET
Sbjct: 1   MEGLPSGYRPNVGVCLINSDDQVFVASRLNVPGAWQMPQGGIEDGEEPKSAAMRELREET 60

Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
           GIVSAEIIAEVPNWLTYDFPPAVK KVNRLW GEWHGQAQKW+
Sbjct: 61  GIVSAEIIAEVPNWLTYDFPPAVKAKVNRLWRGEWHGQAQKWF 103

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467617|ref|XP_004151519.1| PREDICTED: nudix hydrolase 25-like [Cucumis sativus] gi|449494621|ref|XP_004159600.1| PREDICTED: nudix hydrolase 25-like [Cucumis sativus]

 Score =  205 bits (521), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 93/103 (90%), Positives = 100/103 (97%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           MD LPSGYRPNVGVCLINSD Q+FVASRLNVPGAWQMPQGGIEDGEDPKLAA+RELR+ET
Sbjct: 1   MDSLPSGYRPNVGVCLINSDYQVFVASRLNVPGAWQMPQGGIEDGEDPKLAAVRELRKET 60

Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
           GIVSAE++AEVP WLTYDFPPAVKTKVNRLWGG+WHGQAQKW+
Sbjct: 61  GIVSAEMVAEVPKWLTYDFPPAVKTKVNRLWGGQWHGQAQKWF 103

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570126|ref|XP_002526025.1| (Di)nucleoside polyphosphate hydrolase, putative [Ricinus communis] gi|223534672|gb|EEF36365.1| (Di)nucleoside polyphosphate hydrolase, putative [Ricinus communis]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 93/103 (90%), Positives = 100/103 (97%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           MDGLP+GYRPNVGVCLINSD+QIFVASRLNVPGAWQMPQGGIED E+P+ AA+RELREET
Sbjct: 1   MDGLPAGYRPNVGVCLINSDNQIFVASRLNVPGAWQMPQGGIEDDEEPRSAAIRELREET 60

Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
           GIVSAEII+EVPNWLTYDFPPAVK KVNRLWGGEWHGQAQKW+
Sbjct: 61  GIVSAEIISEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWF 103

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520493|gb|AFK48308.1| unknown [Lotus japonicus]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 94/103 (91%), Positives = 98/103 (95%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           M+GLP GYRPNVGVCLINS+ QIFVASRLNVPGAWQMPQGGIEDGEDPK AA+RELREET
Sbjct: 1   MEGLPQGYRPNVGVCLINSNDQIFVASRLNVPGAWQMPQGGIEDGEDPKSAAIRELREET 60

Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
           GIVSAEIIAEV NWLTYDFPPAVK KVNRLWGGEWHGQAQKW+
Sbjct: 61  GIVSAEIIAEVQNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWF 103

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101843|ref|XP_002312442.1| predicted protein [Populus trichocarpa] gi|222852262|gb|EEE89809.1| predicted protein [Populus trichocarpa]

 Score =  202 bits (513), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 94/103 (91%), Positives = 99/103 (96%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           MDGLPSGYRPNVGVCLINSD+ +FVASRLNVPGAWQMPQGGIEDGE+PK AA+REL EET
Sbjct: 1   MDGLPSGYRPNVGVCLINSDNLVFVASRLNVPGAWQMPQGGIEDGEEPKSAAIRELLEET 60

Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
           GIVSAEIIAEVPNWLTYDFPPAVK KVNRLWGGEWHGQAQKW+
Sbjct: 61  GIVSAEIIAEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWF 103

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108323|ref|XP_002314805.1| predicted protein [Populus trichocarpa] gi|222863845|gb|EEF00976.1| predicted protein [Populus trichocarpa]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 93/103 (90%), Positives = 98/103 (95%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           MDGLPSGYRPNVGVCLINSD+ +FVASRLNVPGAWQMPQGGIEDGE+PK AA+REL EET
Sbjct: 1   MDGLPSGYRPNVGVCLINSDNLVFVASRLNVPGAWQMPQGGIEDGEEPKSAAIRELMEET 60

Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
           GIVSAE IAEVPNWLTYDFPPAVK KVNRLWGGEWHGQAQKW+
Sbjct: 61  GIVSAETIAEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWF 103

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530740|ref|XP_003533938.1| PREDICTED: nudix hydrolase 25-like [Glycine max]

 Score =  200 bits (509), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 93/103 (90%), Positives = 97/103 (94%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           M+GLP GYRPNVGVCLINSD QIFVASRLNVPGAWQMPQGGIEDGE+PK AA+RELREET
Sbjct: 1   MEGLPQGYRPNVGVCLINSDDQIFVASRLNVPGAWQMPQGGIEDGEEPKSAAVRELREET 60

Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
           GIVSAEIIAEV  WLTYDFPPAVK KVNRLWGGEWHGQAQKW+
Sbjct: 61  GIVSAEIIAEVQKWLTYDFPPAVKAKVNRLWGGEWHGQAQKWF 103

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220667|ref|NP_174303.1| nudix hydrolase 25 [Arabidopsis thaliana] gi|334182949|ref|NP_001185114.1| nudix hydrolase 25 [Arabidopsis thaliana] gi|75308841|sp|Q9C6Z2.1|NUD25_ARATH RecName: Full=Nudix hydrolase 25; Short=AtNUDT25; AltName: Full=Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) gi|12321626|gb|AAG50852.1|AC074176_1 diadenosine 5,5-P1,P4-tetraphosphate hydrolase, putative [Arabidopsis thaliana] gi|21593042|gb|AAM64991.1| diadenosine 5,5-P1,P4-tetraphosphate hydrolase, putative [Arabidopsis thaliana] gi|98960929|gb|ABF58948.1| At1g30110 [Arabidopsis thaliana] gi|332193058|gb|AEE31179.1| nudix hydrolase 25 [Arabidopsis thaliana] gi|332193059|gb|AEE31180.1| nudix hydrolase 25 [Arabidopsis thaliana]

 Score =  200 bits (509), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 91/103 (88%), Positives = 98/103 (95%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           M+ LP GYRPNVGVCLINSD+ +FVASRLNVPGAWQMPQGGIEDGEDPK AAMREL+EET
Sbjct: 1   MENLPPGYRPNVGVCLINSDNLVFVASRLNVPGAWQMPQGGIEDGEDPKSAAMRELQEET 60

Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
           G+VSAEI++EVPNWLTYDFPPAVK KVNRLWGGEWHGQAQKWY
Sbjct: 61  GVVSAEIVSEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWY 103

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725143|ref|NP_001237082.1| uncharacterized protein LOC100306071 [Glycine max] gi|255627447|gb|ACU14068.1| unknown [Glycine max]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 93/103 (90%), Positives = 97/103 (94%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           M+GLP GYRPNVGVCLINSD QIFVASRLNVPGAWQMPQGGIEDGE+PK AA+RELREET
Sbjct: 1   MEGLPQGYRPNVGVCLINSDDQIFVASRLNVPGAWQMPQGGIEDGEEPKSAAIRELREET 60

Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
           GIVSAEIIAEV  WLTYDFPPAVK KVNRLWGGEWHGQAQKW+
Sbjct: 61  GIVSAEIIAEVQKWLTYDFPPAVKAKVNRLWGGEWHGQAQKWF 103

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845940|ref|XP_002890851.1| hypothetical protein ARALYDRAFT_473229 [Arabidopsis lyrata subsp. lyrata] gi|297336693|gb|EFH67110.1| hypothetical protein ARALYDRAFT_473229 [Arabidopsis lyrata subsp. lyrata]

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 90/103 (87%), Positives = 98/103 (95%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           M+ LP GYRPNVGVCLINSD+ +FVASRLNVPGAWQMPQGGIEDGEDPK AAMREL+EET
Sbjct: 1   MENLPPGYRPNVGVCLINSDNLVFVASRLNVPGAWQMPQGGIEDGEDPKSAAMRELQEET 60

Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
           G+VSAEI++EVPNWLTYDFPPAVK KVNRLWGGEWHGQAQKW+
Sbjct: 61  GVVSAEIVSEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWF 103

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
TAIR|locus:2202487	175	NUDX25 "AT1G30110" [Arabidopsi	0.798	0.588	0.883	1.2e-49
TAIR|locus:2075840	216	NUDX26 "AT3G10620" [Arabidopsi	0.798	0.476	0.650	3.9e-37
TAIR|locus:2164220	227	NUDX27 "AT5G06340" [Arabidopsi	0.767	0.436	0.616	2.9e-32
TIGR_CMR|SPO_3585	161	SPO_3585 "hydrolase, NUDIX fam	0.720	0.577	0.505	1.5e-21
TIGR_CMR|CJE_0684	156	CJE_0684 "(di)nucleoside polyp	0.705	0.583	0.44	3.2e-17
UNIPROTKB|Q9KU53	172	rppH "RNA pyrophosphohydrolase	0.736	0.552	0.420	8.8e-15
TIGR_CMR|VC_0671	172	VC_0671 "MutT/nudix family pro	0.736	0.552	0.420	8.8e-15
UNIPROTKB|P0A776	176	rppH [Escherichia coli K-12 (t	0.705	0.517	0.415	5.6e-13
UNIPROTKB|Q47Y27	171	rppH "RNA pyrophosphohydrolase	0.720	0.543	0.383	1.2e-12
TIGR_CMR|CPS_3625	171	CPS_3625 "(di)nucleoside polyp	0.720	0.543	0.383	1.2e-12

TAIR|locus:2202487 NUDX25 "AT1G30110" [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 91/103 (88%), Positives = 98/103 (95%)

Query:     1 MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
             M+ LP GYRPNVGVCLINSD+ +FVASRLNVPGAWQMPQGGIEDGEDPK AAMREL+EET
Sbjct:     1 MENLPPGYRPNVGVCLINSDNLVFVASRLNVPGAWQMPQGGIEDGEDPKSAAMRELQEET 60

Query:    61 GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
             G+VSAEI++EVPNWLTYDFPPAVK KVNRLWGGEWHGQAQKWY
Sbjct:    61 GVVSAEIVSEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWY 103

GO:0004081 "bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity" evidence=ISS;IDA

GO:0009507 "chloroplast" evidence=ISM

GO:0015967 "diadenosine tetraphosphate catabolic process" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0006753 "nucleoside phosphate metabolic process" evidence=IDA

GO:0008893 "guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity" evidence=IDA

TAIR|locus:2075840 NUDX26 "AT3G10620" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 67/103 (65%), Positives = 85/103 (82%)

Query:     1 MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
             M+  P GYR NVGVCL+NS  +IF ASRL++P AWQMPQGGI++GEDP++A MREL+EET
Sbjct:    56 MESPPEGYRRNVGVCLMNSSKKIFTASRLDIPSAWQMPQGGIDEGEDPRVAVMRELKEET 115

Query:    61 GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
             G+ SAEI+AE P+W+TYDFPP V+ K+   WG +W GQAQKW+
Sbjct:   116 GVHSAEILAEAPHWITYDFPPDVREKLKVRWGSDWKGQAQKWF 158

GO:0004081 "bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0034432 "bis(5'-adenosyl)-pentaphosphatase activity" evidence=IDA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0006753 "nucleoside phosphate metabolic process" evidence=IDA

GO:0008893 "guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity" evidence=IDA

TAIR|locus:2164220 NUDX27 "AT5G06340" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 61/99 (61%), Positives = 77/99 (77%)

Query:     5 PSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64
             P GYR NVG+CL++   +IF AS++++P  WQMPQGG ++GED + AA RELREETG+ S
Sbjct:    59 PVGYRKNVGICLVSPCRKIFTASKIHIPDTWQMPQGGADEGEDLRNAAFRELREETGVTS 118

Query:    65 AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
             AE IAE+PNWLTYDFP  VK K+NR W   + GQAQKW+
Sbjct:   119 AEFIAEIPNWLTYDFPREVKDKLNRKWRTSYKGQAQKWF 157

GO:0004081 "bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0034432 "bis(5'-adenosyl)-pentaphosphatase activity" evidence=IDA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

TIGR_CMR|SPO_3585 SPO_3585 "hydrolase, NUDIX family, NudH subfamily" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 50/99 (50%), Positives = 65/99 (65%)

Query:     8 YRPNVGVCLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS-- 64
             YRP VGV L+N D  +FV  R++    AWQMPQGG+++ EDP  AA+REL EETG+ +  
Sbjct:    11 YRPCVGVVLMNGDGFVFVGQRMDQNTDAWQMPQGGVDEDEDPFEAALRELWEETGVTADL 70

Query:    65 AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
              E++AE   WL YD P  +   V R+W G + GQ QKWY
Sbjct:    71 VEMVAETDGWLPYDLPHDL---VPRIWKGRYRGQEQKWY 106

GO:0008152 "metabolic process" evidence=ISS

GO:0016787 "hydrolase activity" evidence=ISS

TIGR_CMR|CJE_0684 CJE_0684 "(di)nucleoside polyphosphate hydrolase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 44/100 (44%), Positives = 62/100 (62%)

Query:     8 YRPNVGVCLINS----DSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV 63
             YRPNV   +++S    + +IF+A R ++   WQ PQGGI+ GE  K A  REL+EE G  
Sbjct:     7 YRPNVAAIVLSSSYPFECKIFIAKRSDMDNIWQFPQGGIDKGESVKNALFRELKEEIGTD 66

Query:    64 SAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
               EIIAE P WL+YDFP  +   V +++   + GQ QK++
Sbjct:    67 EVEIIAEYPEWLSYDFPSKI---VKKMY--PYDGQIQKYF 101

GO:0006139 "nucleobase-containing compound metabolic process" evidence=ISS

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=ISS

UNIPROTKB|Q9KU53 rppH "RNA pyrophosphohydrolase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 45/107 (42%), Positives = 59/107 (55%)

Query:     1 MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
             +DG   GYR NVG+ + N+  Q+F A R     +WQ PQGGI+DGE P+ A  REL EE 
Sbjct:     2 IDG--DGYRLNVGIVICNNHGQVFWAKRYG-QHSWQFPQGGIDDGESPEQAMFRELYEEV 58

Query:    61 GIVSAEI--IAEVPNWLTYDFPPAVKTKVNRLWGGE--WHGQAQKWY 103
             G+   ++  IA   +WL Y  P   K  V   W  +    GQ QKW+
Sbjct:    59 GLTKKDVKVIATSRHWLRYKLP---KRLVR--WDSQPVCIGQKQKWF 100

GO:0003824 "catalytic activity" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

TIGR_CMR|VC_0671 VC_0671 "MutT/nudix family protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 45/107 (42%), Positives = 59/107 (55%)

Query:     1 MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
             +DG   GYR NVG+ + N+  Q+F A R     +WQ PQGGI+DGE P+ A  REL EE 
Sbjct:     2 IDG--DGYRLNVGIVICNNHGQVFWAKRYG-QHSWQFPQGGIDDGESPEQAMFRELYEEV 58

Query:    61 GIVSAEI--IAEVPNWLTYDFPPAVKTKVNRLWGGE--WHGQAQKWY 103
             G+   ++  IA   +WL Y  P   K  V   W  +    GQ QKW+
Sbjct:    59 GLTKKDVKVIATSRHWLRYKLP---KRLVR--WDSQPVCIGQKQKWF 100

GO:0003824 "catalytic activity" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

UNIPROTKB|P0A776 rppH [Escherichia coli K-12 (taxid:83333)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 42/101 (41%), Positives = 52/101 (51%)

Query:     7 GYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
             GYRPNVG+ + N   Q+  A R     +WQ PQGGI  GE  + A  REL EE G+   +
Sbjct:     6 GYRPNVGIVICNRQGQVMWARRFG-QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKD 64

Query:    67 --IIAEVPNWLTYDFPPAVKTKVNRLWGGE--WHGQAQKWY 103
               I+A   NWL Y  P   K  V   W  +    GQ QKW+
Sbjct:    65 VRILASTRNWLRYKLP---KRLVR--WDTKPVCIGQKQKWF 100

GO:0050779 "RNA destabilization" evidence=IMP

GO:0034353 "RNA pyrophosphohydrolase activity" evidence=IDA

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IDA

GO:0006402 "mRNA catabolic process" evidence=IMP

UNIPROTKB|Q47Y27 rppH "RNA pyrophosphohydrolase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 38/99 (38%), Positives = 52/99 (52%)

Query:     7 GYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS-- 64
             GYR NVG+ +IN   Q+F A R     +WQ PQGG+++GE  +    REL EE G+    
Sbjct:     6 GYRANVGIVIINDMGQVFWARRYG-QHSWQYPQGGVDEGETAEQTMYRELHEEVGLKPEH 64

Query:    65 AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
              +I+A   +WL Y  P   K  +         GQ QKW+
Sbjct:    65 VKIVASTKHWLKYKLP---KRYIRHDSKPVCIGQKQKWF 100

GO:0015961 "diadenosine polyphosphate catabolic process" evidence=ISS

GO:0016787 "hydrolase activity" evidence=ISS

TIGR_CMR|CPS_3625 CPS_3625 "(di)nucleoside polyphosphate hydrolase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 38/99 (38%), Positives = 52/99 (52%)

Query:     7 GYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS-- 64
             GYR NVG+ +IN   Q+F A R     +WQ PQGG+++GE  +    REL EE G+    
Sbjct:     6 GYRANVGIVIINDMGQVFWARRYG-QHSWQYPQGGVDEGETAEQTMYRELHEEVGLKPEH 64

Query:    65 AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
              +I+A   +WL Y  P   K  +         GQ QKW+
Sbjct:    65 VKIVASTKHWLKYKLP---KRYIRHDSKPVCIGQKQKWF 100

GO:0015961 "diadenosine polyphosphate catabolic process" evidence=ISS

GO:0016787 "hydrolase activity" evidence=ISS

GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C6Z2	NUD25_ARATH	3, ., 6, ., 1, ., 1, 7	0.8834	0.7984	0.5885	yes	no
B9KN59	RPPH_RHOSK	3, ., 6, ., 1, ., -	0.5094	0.7751	0.6172	yes	no
A1B502	RPPH_PARDP	3, ., 6, ., 1, ., -	0.5137	0.7829	0.6196	yes	no
Q3IZC1	RPPH_RHOS4	3, ., 6, ., 1, ., -	0.5094	0.7751	0.6172	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.963
3rd Layer	3.6.1.17	0.946

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00030498001	SubName- Full=Putative uncharacterized protein (Chromosome chr1 scaffold_5, whole genome shotgun sequence); (173 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00002216001	SubName- Full=Chromosome chr14 scaffold_128, whole genome shotgun sequence; (485 aa)	•								0.507
	GSVIVG00011801001	SubName- Full=Chromosome undetermined scaffold_339, whole genome shotgun sequence; (252 aa)	•						•		0.478
	GSVIVG00028703001	SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (621 aa)							•		0.448
	GSVIVG00016858001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (405 aa)							•		0.423
	GSVIVG00030263001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (142 aa)							•		0.420
	GSVIVG00035080001	SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (104 aa)	•						•		0.404
	GSVIVG00032518001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (169 aa)	•						•		0.400

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	129
cd03671	147	cd03671, Ap4A_hydrolase_plant_like, Diadenosine te	7e-51
PRK00714	156	PRK00714, PRK00714, RNA pyrophosphohydrolase; Revi	8e-44
pfam00293	133	pfam00293, NUDIX, NUDIX domain	2e-17
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	2e-12
COG0494	161	COG0494, MutT, NTP pyrophosphohydrolases including	5e-12
PRK10776	129	PRK10776, PRK10776, nucleoside triphosphate pyroph	7e-10
cd04664	129	cd04664, Nudix_Hydrolase_7, Members of the Nudix h	4e-09
cd04684	128	cd04684, Nudix_Hydrolase_25, Contains a crystal st	5e-09
cd04676	129	cd04676, Nudix_Hydrolase_17, Members of the Nudix	6e-09
cd03424	137	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase	8e-09
cd04700	142	cd04700, DR1025_like, DR1025 from Deinococcus radi	4e-08
cd04685	133	cd04685, Nudix_Hydrolase_26, Members of the Nudix	4e-08
COG1051	145	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucl	9e-08
cd03425	124	cd03425, MutT_pyrophosphohydrolase, The MutT pyrop	1e-07
PRK09438	148	PRK09438, nudB, dihydroneopterin triphosphate pyro	2e-07
cd04680	120	cd04680, Nudix_Hydrolase_21, Members of the Nudix	2e-07
cd03428	130	cd03428, Ap4A_hydrolase_human_like, Diadenosine te	2e-07
cd04670	127	cd04670, Nudix_Hydrolase_12, Members of the Nudix	3e-07
cd04699	129	cd04699, Nudix_Hydrolase_39, Members of the Nudix	3e-07
cd04683	120	cd04683, Nudix_Hydrolase_24, Members of the Nudix	7e-07
TIGR00586	128	TIGR00586, mutt, mutator mutT protein	9e-07
cd04686	131	cd04686, Nudix_Hydrolase_27, Members of the Nudix	9e-07
cd04677	132	cd04677, Nudix_Hydrolase_18, Members of the Nudix	1e-06
cd04667	112	cd04667, Nudix_Hydrolase_10, Members of the Nudix	2e-06
cd04673	122	cd04673, Nudix_Hydrolase_15, Members of the Nudix	2e-06
cd04662	126	cd04662, Nudix_Hydrolase_5, Members of the Nudix h	2e-06
cd04681	130	cd04681, Nudix_Hydrolase_22, Members of the Nudix	5e-06
cd03673	131	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate	5e-06
cd04695	131	cd04695, Nudix_Hydrolase_36, Members of the Nudix	6e-06
cd04682	122	cd04682, Nudix_Hydrolase_23, Members of the Nudix	8e-06
PRK08999	312	PRK08999, PRK08999, hypothetical protein; Provisio	9e-06
cd04690	118	cd04690, Nudix_Hydrolase_31, Members of the Nudix	1e-05
COG4119	161	COG4119, COG4119, Predicted NTP pyrophosphohydrola	1e-05
cd03427	137	cd03427, MTH1, MutT homolog-1 (MTH1) is a member o	1e-05
cd04678	129	cd04678, Nudix_Hydrolase_19, Members of the Nudix	2e-05
cd03674	138	cd03674, Nudix_Hydrolase_1, Members of the Nudix h	3e-05
cd04669	121	cd04669, Nudix_Hydrolase_11, Members of the Nudix	3e-05
PRK15472	141	PRK15472, PRK15472, nucleoside triphosphatase NudI	4e-05
PRK10546	135	PRK10546, PRK10546, pyrimidine (deoxy)nucleoside t	4e-05
cd04663	126	cd04663, Nudix_Hydrolase_6, Members of the Nudix h	6e-05
cd04666	122	cd04666, Nudix_Hydrolase_9, Members of the Nudix h	9e-05
TIGR02705	156	TIGR02705, nudix_YtkD, nucleoside triphosphatase Y	1e-04
cd04665	118	cd04665, Nudix_Hydrolase_8, Members of the Nudix h	1e-04
cd04674	118	cd04674, Nudix_Hydrolase_16, Members of the Nudix	6e-04
cd04696	125	cd04696, Nudix_Hydrolase_37, Members of the Nudix	6e-04
cd04694	143	cd04694, Nudix_Hydrolase_35, Members of the Nudix	9e-04
cd04691	117	cd04691, Nudix_Hydrolase_32, Members of the Nudix	0.001
PRK11762	185	PRK11762, nudE, adenosine nucleotide hydrolase Nud	0.001
cd04671	123	cd04671, Nudix_Hydrolase_13, Members of the Nudix	0.001
cd04697	126	cd04697, Nudix_Hydrolase_38, Members of the Nudix	0.001
cd04693	127	cd04693, Nudix_Hydrolase_34, Members of the Nudix	0.004

>gnl|CDD|239643 cd03671, Ap4A_hydrolase_plant_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score =  157 bits (400), Expect = 7e-51
 Identities = 59/100 (59%), Positives = 74/100 (74%), Gaps = 5/100 (5%)

Query: 7   GYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI--VS 64
            YRPNVGV L N D ++FV  R++ PGAWQ PQGGI++GEDP+ AA+REL EETG+   S
Sbjct: 1   PYRPNVGVVLFNEDGKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDS 60

Query: 65  AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYA 104
            EIIAE+P+WL YD PP +K K   +WGG + GQ QKW+ 
Sbjct: 61  VEIIAEIPDWLRYDLPPELKLK---IWGGRYRGQEQKWFL 97

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variations. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 147

>gnl|CDD|234820 PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed

 Score =  140 bits (355), Expect = 8e-44
 Identities = 44/100 (44%), Positives = 58/100 (58%), Gaps = 6/100 (6%)

Query: 7   GYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS-- 64
           GYRPNVG+ L+N   Q+F   R+    +WQ PQGGI+ GE P+ A  REL EE G+    
Sbjct: 6   GYRPNVGIILLNRQGQVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPED 65

Query: 65  AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYA 104
            EI+AE  +WL YD P  +  +      G + GQ QKW+ 
Sbjct: 66  VEILAETRDWLRYDLPKRLVRRSK----GVYRGQKQKWFL 101

Length = 156

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 72.1 bits (177), Expect = 2e-17
 Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 5/93 (5%)

Query: 8  YRPNVGVCLINSDSQIFVASR---LNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64
           R  VGV L+N D ++ +  R      PG W++P G +E GE P+ AA+REL EETG+  
Sbjct: 1  RRRAVGVVLLNEDGEVLLVRRSRPPVFPGLWELPGGKVEPGESPEEAAVRELEEETGLRV 60

Query: 65 AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHG 97
             +  +   L Y  P     +   ++  E  G
Sbjct: 61 L--LLLLLGVLEYPAPGRDGGEHVHVFLAELLG 91

Length = 133

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 59.4 bits (144), Expect = 2e-12
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 5/91 (5%)

Query: 10 PNVGVCLINSDSQIFVASR-LNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI-VSAEI 67
            VG  +++ D ++ +  R  +  G W++P GG+E GE  + AA+RE+REETG+ V    
Sbjct: 1  VAVGAVILDEDGRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLR 60

Query: 68 IAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQ 98
          +  V      + P   +  V  ++     G 
Sbjct: 61 LLGV---YEVESPDEGEHAVVFVFLARLVGG 88

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

 Score = 59.1 bits (142), Expect = 5e-12
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 7/83 (8%)

Query: 6  SGYRPNVGVCLINSDS--QIFVASRLNVPGAWQMPQGGIEDGEDP-KLAAMRELREETGI 62
             R      L+  D   ++ +A R +  G W++P G +E GE+  + AA REL EETG+
Sbjct: 7  RKVRDVAVAVLVGRDGPGEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGL 66

Query: 63 VSAEIIAEVPNWLTYDFPPAVKT 85
               + +    L  +FPP+   
Sbjct: 67 R----VKDERLELLGEFPPSPGD 85

Length = 161

>gnl|CDD|182721 PRK10776, PRK10776, nucleoside triphosphate pyrophosphohydrolase; Provisional

 Score = 52.7 bits (127), Expect = 7e-10
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 5/66 (7%)

Query: 18 NSDSQIFVASR---LNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNW 74
          N +++IF+  R    ++ G W+ P G IE GE P+ A +REL+EE GI      A +   
Sbjct: 13 NPNNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQH--ATLFEK 70

Query: 75 LTYDFP 80
          L Y+FP
Sbjct: 71 LEYEFP 76

Length = 129

>gnl|CDD|240022 cd04664, Nudix_Hydrolase_7, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 50.4 bits (121), Expect = 4e-09
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 32 PGAWQMPQGGIEDGEDPKLAAMRELREETGIV--SAEIIAEVPNWLTYDFPP 81
           G WQ   GGIEDGE P  AA RE+ EETG+      ++    +    +F  
Sbjct: 27 AGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTD 78

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240040 cd04684, Nudix_Hydrolase_25, Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

 Score = 50.3 bits (121), Expect = 5e-09
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 15 CLINSDSQIFVA--SRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEV 71
           +I  D ++ +   +     G W +P GGIE GE P+ A  RE+ EETG ++ EI   +
Sbjct: 5  AVIPRDGKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETG-LTVEIGRRL 62

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 128

>gnl|CDD|240032 cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 50.0 bits (120), Expect = 6e-09
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 9  RPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
           P V   + + + ++ +  R +  G W +P G +E GE P   A+RE+REETG+
Sbjct: 2  LPGVTAVVRDDEGRVLLIRRSDN-GLWALPGGAVEPGESPADTAVREVREETGL 54

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

 Score = 50.2 bits (121), Expect = 8e-09
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 35 WQMPQGGIEDGEDPKLAAMRELREETGIVSAEII 68
           ++P G I+ GEDP+ AA REL EETG  + ++ 
Sbjct: 31 LELPAGLIDPGEDPEEAARRELEEETGYEAGDLE 64

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. Length = 137

>gnl|CDD|240055 cd04700, DR1025_like, DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

 Score = 48.4 bits (115), Expect = 4e-08
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 13 GVCLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGI 62
          G  ++N  + + +      P  G W +P G +EDGE P+ AA+RE  EETG+
Sbjct: 17 GAVILNERNDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGL 68

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 142

>gnl|CDD|240041 cd04685, Nudix_Hydrolase_26, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 48.1 bits (115), Expect = 4e-08
 Identities = 22/48 (45%), Positives = 26/48 (54%)

Query: 24 FVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEV 71
                  P  W  P GG+E GE P+ AA RELREETGI  A++   V
Sbjct: 19 GDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPV 66

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 133

>gnl|CDD|223979 COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

 Score = 47.4 bits (113), Expect = 9e-08
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 9  RPNVGVCLINSDS-QIFVASRLNVPGA--WQMPQGGIEDGEDPKLAAMRELREETGI 62
           P V V  +   + +I +  R N PGA  W +P G +E GE  + AA REL+EETG+
Sbjct: 8  TPLVAVGALIVRNGRILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGL 64

Length = 145

>gnl|CDD|239517 cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

 Score = 46.7 bits (112), Expect = 1e-07
 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 22/105 (20%)

Query: 12  VGVCLINSDSQIFVASRL---NVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV--SAE 66
             + +I+ D +I +A R    ++ G W+ P G +E GE P+ A +RELREE GI     E
Sbjct: 5   AAI-IIDDDGRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGE 63

Query: 67  IIAEVPNWLTYDFPPAVKTKVN------RLWGGEWH---GQAQKW 102
           ++A V     +D+P     +V        LW GE      Q  +W
Sbjct: 64  LLATV----EHDYP---DKRVTLHVFLVELWSGEPQLLEHQELRW 101

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides. Length = 124

>gnl|CDD|236516 PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 20 DSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAE 70
          D  + +  R + P  WQ   G +E+GE P   A+RE++EETGI   +++AE
Sbjct: 18 DLGVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGI---DVLAE 65

Length = 148

>gnl|CDD|240036 cd04680, Nudix_Hydrolase_21, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 46.1 bits (110), Expect = 2e-07
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 34 AWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIA 69
           W +P GG+E GE    AA REL EE GI  A +  
Sbjct: 24 GWYLPGGGLERGETFAEAARRELLEELGIRLAVVAE 59

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|239520 cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 46.1 bits (110), Expect = 2e-07
 Identities = 17/31 (54%), Positives = 20/31 (64%)

Query: 32 PGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
           G W  P+G +E GED   AA+RE  EETGI
Sbjct: 26 YGHWDFPKGHVEPGEDDLEAALRETEEETGI 56

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 130

>gnl|CDD|240027 cd04670, Nudix_Hydrolase_12, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 12 VGVCLINSDSQIFVASRLN-VPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
          VG  ++N  +++ V    N  P  W++P G ++ GED    A+RE+ EETGI
Sbjct: 5  VGGLVLNEKNEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGI 56

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

>gnl|CDD|240054 cd04699, Nudix_Hydrolase_39, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 10 PNVGVCLINSDSQIFV-----ASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
            V   ++    +I +       R   PG W++P G +E+GE  + A  RE+ EETG+
Sbjct: 2  VAVAALIVKDVGRILILKRSKDERTA-PGKWELPGGKVEEGETFEEALKREVYEETGL 58

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240039 cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 44.7 bits (106), Expect = 7e-07
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 15 CLINSDSQIFVASRLNV---PGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
           L+  D ++ +  R N     G W +P G +E GED   AA+RE REE G+
Sbjct: 5  VLLRRDDEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGV 55

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|200031 TIGR00586, mutt, mutator mutT protein

 Score = 44.5 bits (105), Expect = 9e-07
 Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 10/96 (10%)

Query: 12  VGVCLINSDSQIFVASRL---NVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII 68
               + N + +I +  R          + P G  E GE P+ A +REL EE GI      
Sbjct: 7   AVGIIRNENGEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSE 66

Query: 69  AEVPNWLTYDFPPAVKTK----VNRLWGGEWHGQAQ 100
            E    L Y+F P   T     + R  GG    + Q
Sbjct: 67  FEK---LEYEFYPRHITLWFWLLERWEGGPPGKEGQ 99

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Lowering the threshold picks up members of MutT superfamily well [DNA metabolism, DNA replication, recombination, and repair]. Length = 128

>gnl|CDD|240042 cd04686, Nudix_Hydrolase_27, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 44.3 bits (105), Expect = 9e-07
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 33 GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII 68
          G ++ P GG+E GED     +REL+EETG  +  +I
Sbjct: 22 GDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVI 57

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 131

>gnl|CDD|240033 cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 5/60 (8%)

Query: 7  GYRP----NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
          G+RP      GV L+N   ++ +  R +  G W +P G +E GE  +  A REL+EETG+
Sbjct: 1  GHRPLILVGAGVILLNEQGEVLLQKRSD-TGDWGLPGGAMELGESLEETARRELKEETGL 59

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 132

>gnl|CDD|240025 cd04667, Nudix_Hydrolase_10, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 33 GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
            W +P G IE GE P  AA REL+EETG+   +
Sbjct: 21 SRWALPGGKIEPGETPLQAARRELQEETGLQGLD 54

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 112

>gnl|CDD|240030 cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.4 bits (103), Expect = 2e-06
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 12 VGV-CLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIV 63
          V V  ++    ++ +  R N P  G W  P G +E GE  + AA+REL EETG+ 
Sbjct: 1  VAVGAVVFRGGRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLE 55

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|240020 cd04662, Nudix_Hydrolase_5, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.3 bits (102), Expect = 2e-06
 Identities = 20/37 (54%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 33 GAWQMPQGGIEDGEDPKLAAMRELREETGI-VSAEII 68
          GAW +P+G   +GEDP LAA RE  EETG  V    I
Sbjct: 33 GAWSIPKGEYTEGEDPLLAAKREFSEETGFCVDGPFI 69

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 126

>gnl|CDD|240037 cd04681, Nudix_Hydrolase_22, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.4 bits (100), Expect = 5e-06
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 12 VGVCLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI-- 67
          VGV ++N D ++ V  R   P  G   +P G ++ GE  + A +RE+REETG+   E+  
Sbjct: 4  VGVLILNEDGELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSY 63

Query: 68 IAEVPNWLTY 77
          +  +PN   Y
Sbjct: 64 LFSLPNTYPY 73

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 130

>gnl|CDD|239645 cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 42.3 bits (100), Expect = 5e-06
 Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 35 WQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIA 69
          W +P+G +E GE P  AA+RE+ EETGI  AE+  
Sbjct: 29 WSLPKGKLEPGETPPEAAVREVEEETGI-RAEVGD 62

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Length = 131

>gnl|CDD|240051 cd04695, Nudix_Hydrolase_36, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.4 bits (100), Expect = 6e-06
 Identities = 18/36 (50%), Positives = 22/36 (61%)

Query: 32 PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 67
           G W    GG+E GE    AA+REL+EETGI   E+
Sbjct: 26 GGFWCHVAGGVEAGETAWQAALRELKEETGISLPEL 61

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 131

>gnl|CDD|240038 cd04682, Nudix_Hydrolase_23, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 41.9 bits (99), Expect = 8e-06
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 32 PGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
          PG W +P G  E GE P    +REL EE G+
Sbjct: 28 PGHWDLPGGHREGGETPLECVLRELLEEIGL 58

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|236361 PRK08999, PRK08999, hypothetical protein; Provisional

 Score = 42.9 bits (102), Expect = 9e-06
 Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 16/102 (15%)

Query: 12  VGVCLINSDSQIFVASR-LNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII 68
            GV + ++D +I +A R       G W+ P G +E GE  + A  REL+EE GI   E+ 
Sbjct: 9   AGV-IRDADGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGI---EVT 64

Query: 69  AEVPNWLTY--DFPPA-VKTKVNRL--WGGEWHG---QAQKW 102
           A  P  +T   D+P   V+  V R+  W GE HG   Q   W
Sbjct: 65  AARP-LITVRHDYPDKRVRLDVRRVTAWQGEPHGREGQPLAW 105

Length = 312

>gnl|CDD|240046 cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 14 VCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
            ++  D ++ +  +      + +P G IE GE P  A +REL EE G+
Sbjct: 5  ALILVRDGRVLLVRKRGTD-VFYLPGGKIEAGETPLQALIRELSEELGL 52

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|226604 COG4119, COG4119, Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 18/30 (60%), Positives = 20/30 (66%)

Query: 33 GAWQMPQGGIEDGEDPKLAAMRELREETGI 62
          GAW +P+G    GEDP LAA RE  EE GI
Sbjct: 36 GAWSIPKGEYTGGEDPWLAARREFSEEIGI 65

Length = 161

>gnl|CDD|239519 cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 15 CLINSDSQIFVASRLNVPGA--WQMPQGGIEDGEDPKLAAMRELREETGIV 63
          C I    ++ + +R   PG   W  P G +E GE P+  A+REL+EETG+ 
Sbjct: 6  CFIKDPDKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLT 56

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a much deeper and narrower substrate binding pocket. Mechanistically, MTH1 contains dual specificity for nucleotides that contain 2-OH-adenine bases and those that contain 8-oxo-guanine bases. Length = 137

>gnl|CDD|240034 cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 12 VGVCLINSDSQIFVASRLNVPGA--WQMPQGGIEDGEDPKLAAMRELREETGI 62
          VGV ++N   ++ +  R    GA  W +P G +E GE  +  A RE+ EETG+
Sbjct: 5  VGVFVLNPKGKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGL 57

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|239646 cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 17/30 (56%), Positives = 20/30 (66%)

Query: 33 GAWQMPQGGIEDGEDPKLAAMRELREETGI 62
          G+W  P G I+  E    AA+RELREETGI
Sbjct: 26 GSWLQPGGHIDPDESLLEAALRELREETGI 55

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 138

>gnl|CDD|240026 cd04669, Nudix_Hydrolase_11, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.1 bits (94), Expect = 3e-05
 Identities = 15/28 (53%), Positives = 19/28 (67%)

Query: 35 WQMPQGGIEDGEDPKLAAMRELREETGI 62
          +  P GGIE+GE P+ AA RE  EE G+
Sbjct: 27 YVFPGGGIEEGETPEEAAKREALEELGL 54

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 121

>gnl|CDD|185369 PRK15472, PRK15472, nucleoside triphosphatase NudI; Provisional

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 9/61 (14%)

Query: 14 VCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPN 73
          +C +  D  +F       PG W +  GG+E GE  + A  RE+REE G     ++ E+  
Sbjct: 19 LCKMADDRGVF-------PGQWALSGGGVEPGERIEEALRREIREELG--EQLLLTEITP 69

Query: 74 W 74
          W
Sbjct: 70 W 70

Length = 141

>gnl|CDD|182536 PRK10546, PRK10546, pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

 Score = 40.1 bits (94), Expect = 4e-05
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 16 LINSDSQIFVASR---LNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
          +I  D +I +A R    +  G W+   G +E GE    A +RELREE GI
Sbjct: 10 IIERDGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGI 59

Length = 135

>gnl|CDD|240021 cd04663, Nudix_Hydrolase_6, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.4 bits (92), Expect = 6e-05
 Identities = 17/34 (50%), Positives = 26/34 (76%), Gaps = 1/34 (2%)

Query: 32 PGA-WQMPQGGIEDGEDPKLAAMRELREETGIVS 64
          P A +Q+ +G +E GE P+ AA+REL+EE+G+ S
Sbjct: 22 PLAGFQIVKGTVEPGETPEAAALRELQEESGLPS 55

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 126

>gnl|CDD|240024 cd04666, Nudix_Hydrolase_9, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.8 bits (91), Expect = 9e-05
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 33 GAWQMPQGGIEDGEDPKLAAMRELREETGIV 63
          G W +P+GG E  E P  AA RE  EE G+ 
Sbjct: 26 GRWIVPKGGPEKDESPAEAAAREAWEEAGVR 56

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|131752 TIGR02705, nudix_YtkD, nucleoside triphosphatase YtkD

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 38 PQGGIEDGEDPKLAAMRELREETGIVSAEI 67
          P G +E GE  K AA+RE+ EETG +  E+
Sbjct: 50 PGGKVEPGETSKEAAIREVMEETGAIVKEL 79

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference , both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it [DNA metabolism, DNA replication, recombination, and repair]. Length = 156

>gnl|CDD|240023 cd04665, Nudix_Hydrolase_8, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 12 VGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 67
          + +C  + D  + V  R    G W+ P G +E GE  + AA RE+ EETG     +
Sbjct: 4  LVICFYD-DGLLLV--RHKDRG-WEFPGGHVEPGETIEEAARREVWEETGAELGSL 55

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|240031 cd04674, Nudix_Hydrolase_16, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 36.7 bits (85), Expect = 6e-04
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 12 VGVCLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65
          V V L+  D  + V  R   P  G   +P G IE GE  + A  REL EETG+   
Sbjct: 6  VVVALLPVDDGLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVD 61

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|240052 cd04696, Nudix_Hydrolase_37, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 36.7 bits (85), Expect = 6e-04
 Identities = 20/58 (34%), Positives = 28/58 (48%)

Query: 10 PNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 67
            VG  +   D +I +       G W +P G +E GE  + A  RE REETG+   +I
Sbjct: 3  VTVGALIYAPDGRILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDI 60

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|240050 cd04694, Nudix_Hydrolase_35, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 36.7 bits (85), Expect = 9e-04
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 12 VGVCLINSDSQIFV---ASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
          V V L +SD ++ +   AS L + P  W  P G +E GE+   A +REL EETG+
Sbjct: 4  VAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGL 58

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 143

>gnl|CDD|240047 cd04691, Nudix_Hydrolase_32, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 35.9 bits (83), Expect = 0.001
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 32 PGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
          PG   +P G IE GE  + A +RE++EE G+
Sbjct: 26 PGKLNIPGGHIEAGESQEEALLREVQEELGV 56

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 117

>gnl|CDD|183303 PRK11762, nudE, adenosine nucleotide hydrolase NudE; Provisional

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 14/24 (58%), Positives = 17/24 (70%)

Query: 38  PQGGIEDGEDPKLAAMRELREETG 61
           P+G I+ GE P  AA REL+EE G
Sbjct: 79  PKGLIDPGETPLEAANRELKEEVG 102

Length = 185

>gnl|CDD|240028 cd04671, Nudix_Hydrolase_13, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 35.9 bits (83), Expect = 0.001
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 33 GAWQMPQGGIEDGEDPKLAAMRELREETGI 62
          G W +P G +E GE  + A  RE++EETG+
Sbjct: 26 GKWYLPAGRMEPGETIEEAVKREVKEETGL 55

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 123

>gnl|CDD|240053 cd04697, Nudix_Hydrolase_38, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 35.9 bits (83), Expect = 0.001
 Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 13/82 (15%)

Query: 16 LINSDSQIFVASR----LNVPGAWQMPQGG-IEDGEDPKLAAMRELREETGIVSAEIIAE 70
          + NS+ ++ V  R       PG W +  GG ++ GE     A REL EE G      I  
Sbjct: 7  VFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELG------IDG 60

Query: 71 VPNWLTYDFPPAVKTKVNRLWG 92
          V   LT        T  NR+WG
Sbjct: 61 VQ--LTPLGLFYYDTDGNRVWG 80

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 126

>gnl|CDD|240049 cd04693, Nudix_Hydrolase_34, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 8/73 (10%)

Query: 12 VGVCLINSDSQIFV----ASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 67
          V VC+ NS  ++ +     ++   PG W +  GG     +   AA RE++EE G+   E+
Sbjct: 3  VHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETSTAAEREVKEELGL---EL 59

Query: 68 -IAEVPNWLTYDF 79
            +E+     Y F
Sbjct: 60 DFSELRPLFRYFF 72

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	129
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.87
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.86
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.86
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.86
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.85
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.84
PLN02325	144	nudix hydrolase	99.84
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.83
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.82
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.82
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.82
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.82
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.82
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.81
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.81
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.81
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.81
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.81
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.81
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.81
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.81
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.8
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.8
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.8
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.8
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.8
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.8
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.8
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.79
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.79
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.78
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.78
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.78
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.78
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.78
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.78
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.77
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.77
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.77
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.77
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.77
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.77
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.77
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.76
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.76
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.76
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.75
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.75
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.75
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.75
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.74
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.74
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.74
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.73
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.73
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.73
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.73
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.72
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.7
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.7
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.69
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.68
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.67
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.66
PRK10707	190	putative NUDIX hydrolase; Provisional	99.64
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.64
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.63
PRK08999	312	hypothetical protein; Provisional	99.61
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.61
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.61
KOG2839	145	consensus Diadenosine and diphosphoinositol polyph	99.6
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.6
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.59
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.57
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.57
PLN02709	222	nudix hydrolase	99.5
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.45
KOG3084	345	consensus NADH pyrophosphatase I of the Nudix fami	99.44
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.44
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.42
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	99.42
PLN02791	770	Nudix hydrolase homolog	99.33
PLN02552	247	isopentenyl-diphosphate delta-isomerase	99.33
PLN03143	291	nudix hydrolase; Provisional	99.24
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	99.1
KOG3041	225	consensus Nucleoside diphosphate-sugar hydrolase o	99.05
KOG3069	246	consensus Peroxisomal NUDIX hydrolase [Replication	98.99
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	98.93
KOG0648	295	consensus Predicted NUDIX hydrolase FGF-2 and rela	98.93
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	98.66
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	98.24
PLN02839	372	nudix hydrolase	98.19
KOG4195	275	consensus Transient receptor potential-related cha	98.13
KOG2937	348	consensus Decapping enzyme complex, predicted pyro	97.7
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	97.51
KOG0142	225	consensus Isopentenyl pyrophosphate:dimethylallyl	96.75
KOG1689	221	consensus mRNA cleavage factor I subunit [RNA proc	96.5
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	95.75
COG4112	203	Predicted phosphoesterase (MutT family) [General f	95.27
KOG4313	306	consensus Thiamine pyrophosphokinase [Nucleotide t	95.05
PRK10880	350	adenine DNA glycosylase; Provisional	94.27
KOG4548	263	consensus Mitochondrial ribosomal protein L17 [Tra	92.48
TIGR01084	275	mutY A/G-specific adenine glycosylase. This equiva	91.6
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	89.81
PF14443	126	DBC1: DBC1	89.05
PRK13910	289	DNA glycosylase MutY; Provisional	86.17
PF03487	43	IL13: Interleukin-13; InterPro: IPR020470 Interleu	80.54

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.87  E-value=3.6e-22  Score=135.30  Aligned_cols=58  Identities=34%  Similarity=0.555  Sum_probs=53.6

Q ss_pred             CCcCEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022            7 GYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus         7 ~~~~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      ..+.+|++++++.++++||++|...++.|++|||++|+|||+.+||+||++||||+++
T Consensus         5 ~~~~~v~~vi~~~~~~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~   62 (148)
T PRK09438          5 KRPVSVLVVIYTPDLGVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDV   62 (148)
T ss_pred             cCceEEEEEEEeCCCeEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCc
Confidence            3677899999999999999999876789999999999999999999999999999986

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.86  E-value=4.4e-21  Score=131.45  Aligned_cols=80  Identities=49%  Similarity=0.894  Sum_probs=65.8

Q ss_pred             CCCCCCCCcCEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee--eEEeecCceEEee
Q 033022            1 MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA--EIIAEVPNWLTYD   78 (129)
Q Consensus         1 m~~~~~~~~~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~--~~~~~~~~~~~~~   78 (129)
                      |++-. .+|.++++++++.++++||++|.+.++.|++|||++++|||+.+||.||++||||+.+.  .++.....++.|+
T Consensus         1 ~~~~~-~~~~~v~~~i~~~~g~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~   79 (156)
T PRK00714          1 MIDDD-GYRPNVGIILLNRQGQVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYD   79 (156)
T ss_pred             CCCCC-CCCCeEEEEEEecCCEEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEec
Confidence            44444 48999999999999999999998766899999999999999999999999999999863  3344444555666


Q ss_pred             cCC
Q 033022           79 FPP   81 (129)
Q Consensus        79 ~~~   81 (129)
                      ++.
T Consensus        80 ~~~   82 (156)
T PRK00714         80 LPK   82 (156)
T ss_pred             CcH
Confidence            654

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.86  E-value=5.6e-21  Score=129.46  Aligned_cols=73  Identities=64%  Similarity=1.250  Sum_probs=62.5

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce--eeEEeecCceEEeecC
Q 033022            8 YRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS--AEIIAEVPNWLTYDFP   80 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~--~~~~~~~~~~~~~~~~   80 (129)
                      +|.+|++++++.++++||++|.+.++.|++|||++++||++.+||+||++||||+++  ..++.....+..|.++
T Consensus         2 ~~~~v~~ii~~~~~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~   76 (147)
T cd03671           2 YRPNVGVVLFNEDGKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLP   76 (147)
T ss_pred             CCceEEEEEEeCCCEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeCh
Confidence            788999999999999999999986689999999999999999999999999999995  3445555555566654

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.86  E-value=7.7e-21  Score=130.59  Aligned_cols=57  Identities=23%  Similarity=0.307  Sum_probs=50.3

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022            8 YRPNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      ...+|+++|.+.+++|||+||.+.  +|.|++|||+|++|||+++||+||++||||+++
T Consensus        16 ~~~~v~~vI~~~~g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v   74 (159)
T PRK15434         16 PLISLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRL   74 (159)
T ss_pred             ceEEEEEEEECCCCEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCcc
Confidence            345777788888899999999753  489999999999999999999999999999985

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.85  E-value=1.8e-20  Score=123.45  Aligned_cols=56  Identities=30%  Similarity=0.602  Sum_probs=51.6

Q ss_pred             cCEEEEEEEeCCCcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022            9 RPNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus         9 ~~~~~~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      |.+|+++|++.++++||++|.+.  +|.|.+|||++++|||+.+||+||++||||+++
T Consensus         2 ~~~~~~~i~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~   59 (125)
T cd04679           2 RVGCGAAILRDDGKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSI   59 (125)
T ss_pred             ceEEEEEEECCCCEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCc
Confidence            67899999999899999999753  489999999999999999999999999999996

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.84  E-value=2.4e-20  Score=123.45  Aligned_cols=55  Identities=36%  Similarity=0.646  Sum_probs=49.7

Q ss_pred             EEEEEEEeCCCcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022           11 NVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus        11 ~~~~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      +|+++|++.++++||++|...  +|.|.+|||++++|||+.+||.||++||||+++.
T Consensus         3 av~~~i~~~~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   59 (130)
T cd04681           3 AVGVLILNEDGELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVT   59 (130)
T ss_pred             eEEEEEEcCCCcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCccc
Confidence            677788898899999999753  5899999999999999999999999999999864

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PLN02325 nudix hydrolase

Probab=99.84  E-value=3.8e-20  Score=125.27  Aligned_cols=63  Identities=29%  Similarity=0.391  Sum_probs=53.4

Q ss_pred             CCCCCCCCcCEEEEEEEeCCCcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022            1 MDGLPSGYRPNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus         1 m~~~~~~~~~~~~~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      |+.-.+..+.+++++|++. +++||+||.+.  .|.|.+|||+++.|||+.+||+||++||||+++
T Consensus         1 ~~~~~~~p~~~v~~vi~~~-~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v   65 (144)
T PLN02325          1 METGEPIPRVAVVVFLLKG-NSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEI   65 (144)
T ss_pred             CCCCCCCCeEEEEEEEEcC-CEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCC
Confidence            5555555677777777775 69999999863  378999999999999999999999999999996

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.83  E-value=1.1e-19  Score=122.96  Aligned_cols=57  Identities=26%  Similarity=0.378  Sum_probs=51.3

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcC--CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022            8 YRPNVGVCLINSDSQIFVASRLN--VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~--~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      .+.+|+++|++.++++||++|.+  .+|.|.+|||++++|||+.+||+||++||||+++
T Consensus        11 p~v~v~~vI~~~~g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v   69 (144)
T cd03430          11 PLVSIDLIVENEDGQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEF   69 (144)
T ss_pred             CeEEEEEEEEeCCCeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCc
Confidence            34678888889889999999975  3589999999999999999999999999999986

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.82  E-value=2.3e-19  Score=117.93  Aligned_cols=54  Identities=35%  Similarity=0.603  Sum_probs=47.6

Q ss_pred             EEEEEEEeCCCcEEEEEEcCC-CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022           11 NVGVCLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus        11 ~~~~~i~~~~~~vLl~~r~~~-~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      .++++|+++++++||++|.+. .+.|.+|||++++|||+.+||+||++||||+++
T Consensus         2 ~~~~ii~~~~~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~   56 (121)
T cd04669           2 RASIVIINDQGEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDV   56 (121)
T ss_pred             ceEEEEEeCCCEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeE
Confidence            366777787789999998753 378999999999999999999999999999996

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.82  E-value=3e-20  Score=122.59  Aligned_cols=109  Identities=22%  Similarity=0.354  Sum_probs=71.6

Q ss_pred             CEEEEEEEeCC---CcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCC--ee
Q 033022           10 PNVGVCLINSD---SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPA--VK   84 (129)
Q Consensus        10 ~~~~~~i~~~~---~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~--~~   84 (129)
                      .++++++++.+   ++|||++|.+ .+.|.+|||++++|||+.+||.||++||||+++..+. .. ....+.++..  ..
T Consensus         2 ~~a~~ii~~~~~~~~~vLl~~~~~-~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~-~~-~~~~~~~~~~~~~~   78 (131)
T cd03673           2 LAAGGVVFRGSDGGIEVLLIHRPR-GDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGD-PL-GTIRYWFSSSGKRV   78 (131)
T ss_pred             eeEEEEEEEccCCCeEEEEEEcCC-CCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecc-eE-EEEEEeccCCCCCc
Confidence            56778787765   7999999986 3799999999999999999999999999999864221 11 1122333321  11


Q ss_pred             EeEEEEecc-----------eeeeeeeeEEecccccCCCCcccccccc
Q 033022           85 TKVNRLWGG-----------EWHGQAQKWYASLLLLVPLTLSTHTHFM  121 (129)
Q Consensus        85 ~~~~~~~~~-----------~~~~~~~~W~~~~~~~~~~~~~~~~~~~  121 (129)
                      .....+|..           ..+..+..|++++.+...+.++.+..++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l  126 (131)
T cd03673          79 HKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRLSYPNDRELL  126 (131)
T ss_pred             ceEEEEEEEEEcCCCcccCCCCcEEEEEEcCHHHHHHHcCCHhHHHHH
Confidence            112222211           1123567899888777666655554443

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.82  E-value=3.3e-19  Score=116.97  Aligned_cols=112  Identities=21%  Similarity=0.310  Sum_probs=73.1

Q ss_pred             cCEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEE--eecC-ceEEeecCCCee-
Q 033022            9 RPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII--AEVP-NWLTYDFPPAVK-   84 (129)
Q Consensus         9 ~~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~--~~~~-~~~~~~~~~~~~-   84 (129)
                      |.++++++++.++++||++|... |.|++|||++++|||+.+||+||++||||+++....  +... ....+.++.... 
T Consensus         2 ~~~v~~ii~~~~~~vLl~~r~~~-~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (129)
T cd04676           2 LPGVTAVVRDDEGRVLLIRRSDN-GLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPNGDVR   80 (129)
T ss_pred             cceEEEEEECCCCeEEEEEecCC-CcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCCCCcE
Confidence            56888888888889999999864 899999999999999999999999999999853211  1111 111223333221 


Q ss_pred             EeEEEEecce----------eeeeeeeEEecccccCCCCcccccccc
Q 033022           85 TKVNRLWGGE----------WHGQAQKWYASLLLLVPLTLSTHTHFM  121 (129)
Q Consensus        85 ~~~~~~~~~~----------~~~~~~~W~~~~~~~~~~~~~~~~~~~  121 (129)
                      ..+..++...          .+..+.+|++++.+......+....++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~  127 (129)
T cd04676          81 QYLDITFRCRVVGGELRVGDDESLDVAWFDPDGLPPLLMHPSMRLRI  127 (129)
T ss_pred             EEEEEEEEEEeeCCeecCCCCceeEEEEEChhhCccccCCHhHHHHh
Confidence            2222222211          134567899988776554444444443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.82  E-value=7.6e-20  Score=123.97  Aligned_cols=56  Identities=30%  Similarity=0.606  Sum_probs=49.1

Q ss_pred             CEEEEEEEeCC-CcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceee
Q 033022           10 PNVGVCLINSD-SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE   66 (129)
Q Consensus        10 ~~~~~~i~~~~-~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~   66 (129)
                      +.+++++++.+ +++||++|.. ++.|++|||++++|||+.+||+||++||||+.+..
T Consensus         2 p~~gaii~~~~~~~vLLvr~~~-~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~   58 (145)
T cd03672           2 PVYGAIILNEDLDKVLLVKGWK-SKSWSFPKGKINKDEDDHDCAIREVYEETGFDISK   58 (145)
T ss_pred             CeeEEEEEeCCCCEEEEEEecC-CCCEECCCccCCCCcCHHHHHHHHHHHhhCcccee
Confidence            36788888875 6999999875 45999999999999999999999999999998643

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.82  E-value=1.3e-19  Score=119.39  Aligned_cols=55  Identities=35%  Similarity=0.545  Sum_probs=50.4

Q ss_pred             CEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022           10 PNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus        10 ~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      .+|+++|++.++++||+||..++|.|.+|||++++|||+.+||+||++||||+++
T Consensus         3 ~~v~~~i~~~~~~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~   57 (125)
T cd04696           3 VTVGALIYAPDGRILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKL   57 (125)
T ss_pred             cEEEEEEECCCCCEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcc
Confidence            4678888888899999998766799999999999999999999999999999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=3.4e-19  Score=117.61  Aligned_cols=54  Identities=30%  Similarity=0.593  Sum_probs=48.8

Q ss_pred             EEEEEEEeCCCcEEEEEEcC--CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022           11 NVGVCLINSDSQIFVASRLN--VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus        11 ~~~~~i~~~~~~vLl~~r~~--~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      .+++++++.++++||++|.+  .++.|.+|||++++|||+++||+||++||||+++
T Consensus         2 ~~~~vv~~~~~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~   57 (123)
T cd04671           2 IVAAVILNNQGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDC   57 (123)
T ss_pred             EEEEEEEcCCCEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCee
Confidence            46778888889999999875  3589999999999999999999999999999996

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=3.5e-19  Score=116.40  Aligned_cols=53  Identities=32%  Similarity=0.507  Sum_probs=45.3

Q ss_pred             EEEEEEeCCCcEEEEEEcC----CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022           12 VGVCLINSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus        12 ~~~~i~~~~~~vLl~~r~~----~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      |+++|+++ +++||+||..    ++|.|++|||++++|||+++||+||++||||+++.
T Consensus         3 v~~vi~~~-~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~   59 (117)
T cd04691           3 VVGVLFSD-DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPL   59 (117)
T ss_pred             EEEEEEEC-CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcc
Confidence            44455554 7999999974    45899999999999999999999999999999953

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=2.1e-19  Score=120.59  Aligned_cols=56  Identities=34%  Similarity=0.541  Sum_probs=50.8

Q ss_pred             cCEEEEEEEeCC-CcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022            9 RPNVGVCLINSD-SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         9 ~~~~~~~i~~~~-~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      |.++++++++++ +++||++|.+ .|.|.+|||++++|||+++||.||++||||+++.
T Consensus         2 ~~~~~~~v~~~~~~~vLLv~r~~-~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~   58 (138)
T cd03674           2 HFTASAFVVNPDRGKVLLTHHRK-LGSWLQPGGHIDPDESLLEAALRELREETGIELL   58 (138)
T ss_pred             cEEEEEEEEeCCCCeEEEEEEcC-CCcEECCceecCCCCCHHHHHHHHHHHHHCCCcc
Confidence            567888999887 8999999876 6899999999999999999999999999999853

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.81  E-value=4.3e-19  Score=116.62  Aligned_cols=54  Identities=31%  Similarity=0.587  Sum_probs=47.9

Q ss_pred             EEEEEEEeCCCcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022           11 NVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus        11 ~~~~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      ++.++|++. +++||++|.+.  +|.|.+|||++++|||+.+||+||++||||+++.
T Consensus         2 ~~~~ii~~~-~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~   57 (128)
T cd04684           2 GAYAVIPRD-GKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVE   57 (128)
T ss_pred             eeEEEEEeC-CEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEee
Confidence            566777776 89999999874  5899999999999999999999999999999853

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.81  E-value=5.3e-19  Score=119.29  Aligned_cols=105  Identities=22%  Similarity=0.349  Sum_probs=70.9

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeE
Q 033022            8 YRPNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT   85 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   85 (129)
                      ..++|++++++.++++||++|...  +|.|++|||++++|||+++||+||++||||+++... ..... ..+.++.... 
T Consensus        12 ~~~av~~vv~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~-~~~~~-~~~~~~~~~~-   88 (142)
T cd04700          12 EARAAGAVILNERNDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPV-KFLGT-YLGRFDDGVL-   88 (142)
T ss_pred             eeeeEEEEEEeCCCcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeecc-EEEEE-EEEEcCCCcE-
Confidence            456888899998889999988753  489999999999999999999999999999996332 21111 1223333221 


Q ss_pred             eEEEEecce-----------eeeeeeeEEecccccCCCCcc
Q 033022           86 KVNRLWGGE-----------WHGQAQKWYASLLLLVPLTLS  115 (129)
Q Consensus        86 ~~~~~~~~~-----------~~~~~~~W~~~~~~~~~~~~~  115 (129)
                      .+.++|...           -+..+.+||+++.+...+...
T Consensus        89 ~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g  129 (142)
T cd04700          89 VLRHVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQLYAQG  129 (142)
T ss_pred             EEEEEEEEEecCCccccCCCCCEEEEEEECHHHhhhccccc
Confidence            111222111           134578999988776554433

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.81  E-value=4.4e-19  Score=115.58  Aligned_cols=54  Identities=33%  Similarity=0.516  Sum_probs=49.2

Q ss_pred             EEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022           11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus        11 ~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      ++.+++++.++++||++|... +.|.+|||++++|||+++||+||++||||+.+.
T Consensus         2 ~~~~~i~~~~~~vLL~~r~~~-~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~   55 (120)
T cd04680           2 GARAVVTDADGRVLLVRHTYG-PGWYLPGGGLERGETFAEAARRELLEELGIRLA   55 (120)
T ss_pred             ceEEEEECCCCeEEEEEECCC-CcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccc
Confidence            678888998899999998763 499999999999999999999999999999964

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.81  E-value=4.5e-19  Score=118.27  Aligned_cols=108  Identities=22%  Similarity=0.373  Sum_probs=67.7

Q ss_pred             EEEEEEEeCCCcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCC-eeEeE
Q 033022           11 NVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPA-VKTKV   87 (129)
Q Consensus        11 ~~~~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~-~~~~~   87 (129)
                      ++.+++.++ +++||++|...  +|.|.+|||++++|||+.+||+||++||||+++.... .. ....+..+.. .....
T Consensus         3 ~~~~~i~~~-~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~-~~-~~~~~~~~~~~~~~~~   79 (137)
T cd03427           3 TTLCFIKDP-DKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLK-LV-GIIKFPFPGEEERYGV   79 (137)
T ss_pred             EEEEEEEEC-CEEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecce-EE-EEEEEEcCCCCcEEEE
Confidence            334444454 79999999864  6899999999999999999999999999999863221 11 2223333321 11111


Q ss_pred             EEEecc--------eeeeeeeeEEecccccCCCCcccccccc
Q 033022           88 NRLWGG--------EWHGQAQKWYASLLLLVPLTLSTHTHFM  121 (129)
Q Consensus        88 ~~~~~~--------~~~~~~~~W~~~~~~~~~~~~~~~~~~~  121 (129)
                      ..+...        ..+....+|++++.+........+..++
T Consensus        80 ~~f~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l  121 (137)
T cd03427          80 FVFLATEFEGEPLKESEEGILDWFDIDDLPLLPMWPGDREWL  121 (137)
T ss_pred             EEEEECCcccccCCCCccccceEEcHhhcccccCCCCcHHHH
Confidence            122111        1223567899988776554444444443

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.81  E-value=3e-19  Score=120.06  Aligned_cols=55  Identities=33%  Similarity=0.549  Sum_probs=47.0

Q ss_pred             CEEEEEEEeCCCcEEEEEEcC----CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022           10 PNVGVCLINSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus        10 ~~~~~~i~~~~~~vLl~~r~~----~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      +.+.+.+++.++++||+||+.    ++|.|++|||++++|||+++||+||++||||+++
T Consensus         4 r~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~   62 (141)
T PRK15472          4 RTIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQL   62 (141)
T ss_pred             eeEEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCce
Confidence            455555555678999999874    3599999999999999999999999999999985

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=1.3e-18  Score=115.12  Aligned_cols=57  Identities=35%  Similarity=0.629  Sum_probs=51.7

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022            8 YRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      ++.++++++++.++++||++|... |.|.+|||++++|||+.+||+||++||||+++.
T Consensus         6 ~~~~~~~~v~~~~~~vLL~~r~~~-~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~   62 (132)
T cd04677           6 ILVGAGVILLNEQGEVLLQKRSDT-GDWGLPGGAMELGESLEETARRELKEETGLEVE   62 (132)
T ss_pred             cccceEEEEEeCCCCEEEEEecCC-CcEECCeeecCCCCCHHHHHHHHHHHHhCCeee
Confidence            567888888999899999999864 789999999999999999999999999999964

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=2.6e-19  Score=118.47  Aligned_cols=55  Identities=40%  Similarity=0.600  Sum_probs=50.6

Q ss_pred             CEEEEEEEeC--CCcEEEEEEcCC-CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022           10 PNVGVCLINS--DSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus        10 ~~~~~~i~~~--~~~vLl~~r~~~-~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      +.+++++++.  ++++||++|.+. +|.|.+|||++++|||+.+||+||++||||+.+
T Consensus         2 ~~~~v~~~~~~~~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~   59 (129)
T cd04664           2 RSVLVVPYRLTGEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDP   59 (129)
T ss_pred             cEEEEEEEEeCCCCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCCh
Confidence            5788888888  899999999874 799999999999999999999999999999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=3e-19  Score=117.86  Aligned_cols=56  Identities=36%  Similarity=0.615  Sum_probs=50.9

Q ss_pred             cCEEEEEEEeCCCcEEEEEEcC-CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022            9 RPNVGVCLINSDSQIFVASRLN-VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus         9 ~~~~~~~i~~~~~~vLl~~r~~-~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      +.+|+++|++.++++||++|.. ++|.|.+|||++++|||+.+||+||++||||+.+
T Consensus         2 ~~~~~~~v~~~~~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~   58 (127)
T cd04670           2 TVGVGGLVLNEKNEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDT   58 (127)
T ss_pred             eeEEEEEEEcCCCeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCc
Confidence            5688889999989999998765 3689999999999999999999999999999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=7.3e-19  Score=114.81  Aligned_cols=54  Identities=41%  Similarity=0.689  Sum_probs=46.4

Q ss_pred             EEEEEEEeCCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022           11 NVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus        11 ~~~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      +|+++|++ +++|||+||.+   .+|.|++|||++++|||+.+||+||++||||+.+.
T Consensus         2 ~v~~vi~~-~~~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~   58 (120)
T cd04683           2 AVYVLLRR-DDEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLD   58 (120)
T ss_pred             cEEEEEEE-CCEEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccC
Confidence            45666665 47999999875   35899999999999999999999999999999853

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.80  E-value=5e-19  Score=117.01  Aligned_cols=57  Identities=35%  Similarity=0.603  Sum_probs=52.0

Q ss_pred             cCEEEEEEEeCCCcEEEEEEcC--CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022            9 RPNVGVCLINSDSQIFVASRLN--VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         9 ~~~~~~~i~~~~~~vLl~~r~~--~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      |.+++++|++.++++||++|..  .+|.|.+|||++++|||+.+||.||++||||+++.
T Consensus         2 ~~~v~~ii~~~~~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~   60 (129)
T cd04678           2 RVGVGVFVLNPKGKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIE   60 (129)
T ss_pred             ceEEEEEEECCCCeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCccc
Confidence            5688899999989999999984  45899999999999999999999999999999963

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.80  E-value=7.9e-19  Score=119.00  Aligned_cols=56  Identities=39%  Similarity=0.615  Sum_probs=48.9

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcCCC--CcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022            8 YRPNVGVCLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~~~--g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      ...++++++...+ +|||+||.+.|  |.|.+|||++|.|||+++||.||++||||+++
T Consensus         9 p~~~v~~~i~~~~-~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~   66 (145)
T COG1051           9 PLVAVGALIVRNG-RILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRV   66 (145)
T ss_pred             cceeeeEEEEeCC-EEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcc
Confidence            4456666666665 99999999865  88999999999999999999999999999994

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.80  E-value=2e-19  Score=118.95  Aligned_cols=55  Identities=33%  Similarity=0.567  Sum_probs=47.9

Q ss_pred             cCEEEEEEEeCCC---cEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022            9 RPNVGVCLINSDS---QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         9 ~~~~~~~i~~~~~---~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      +.++++++++.++   ++||++|++  +.|++|||++++|||+.+||+||++||||+.+.
T Consensus         2 ~~~~g~vi~~~~~~~~~vLl~~~~~--~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~   59 (130)
T cd03428           2 ERSAGAIIYRRLNNEIEYLLLQASY--GHWDFPKGHVEPGEDDLEAALRETEEETGITAE   59 (130)
T ss_pred             ceEEEEEEEEecCCCceEEEEEccC--CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChh
Confidence            3567777776554   799999886  899999999999999999999999999999964

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=1.6e-18  Score=114.66  Aligned_cols=55  Identities=31%  Similarity=0.422  Sum_probs=47.8

Q ss_pred             cCEEEEEEEeCCCcEEEEEEcCC-CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022            9 RPNVGVCLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus         9 ~~~~~~~i~~~~~~vLl~~r~~~-~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      |.+|+++|++ ++++||++|.+. ++.|.+|||++++|||+++||+||++||||+.+
T Consensus         1 r~~a~~iv~~-~~~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v   56 (128)
T cd04687           1 RNSAKAVIIK-NDKILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDV   56 (128)
T ss_pred             CcEEEEEEEE-CCEEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcc
Confidence            4577777776 469999998753 368999999999999999999999999999996

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.79  E-value=4.3e-19  Score=117.03  Aligned_cols=57  Identities=47%  Similarity=0.876  Sum_probs=53.1

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcCCC----CcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022            8 YRPNVGVCLINSDSQIFVASRLNVP----GAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~~~----g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      +|++|++++++.++++||++|.+.+    +.|.+|||++++|||+.+||+||++||||+++
T Consensus         1 ~~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~   61 (134)
T PF00293_consen    1 WRRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDV   61 (134)
T ss_dssp             EEEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEE
T ss_pred             CCCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhccccee
Confidence            4789999999999999999999754    89999999999999999999999999999996

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=8.5e-19  Score=115.90  Aligned_cols=57  Identities=32%  Similarity=0.479  Sum_probs=50.8

Q ss_pred             CEEEEEEEeCCCcEEEEEEcC----CCCcEEc-CeeecCCCCCHHHHHHHHHHHHhCCceee
Q 033022           10 PNVGVCLINSDSQIFVASRLN----VPGAWQM-PQGGIEDGEDPKLAAMRELREETGIVSAE   66 (129)
Q Consensus        10 ~~~~~~i~~~~~~vLl~~r~~----~~g~w~~-PgG~ve~gEs~~~aa~RE~~EEtGl~~~~   66 (129)
                      +++.+++++.+++|||++|..    .+|.|++ |||++++||++.+||+||++||||+.+..
T Consensus         1 ~~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~   62 (126)
T cd04697           1 RATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQ   62 (126)
T ss_pred             CeEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccc
Confidence            368889999999999999873    4689999 68999999999999999999999999643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=1.2e-18  Score=114.31  Aligned_cols=53  Identities=36%  Similarity=0.616  Sum_probs=45.4

Q ss_pred             EEEEEEEeCCCcEEEEEEcC-----CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022           11 NVGVCLINSDSQIFVASRLN-----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus        11 ~~~~~i~~~~~~vLl~~r~~-----~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      ++++++++ ++++||++|..     ++|.|.+|||+++.|||+++||+||++||||+++
T Consensus         3 v~~~~~~~-~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~   60 (122)
T cd04682           3 VALALLIG-DGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTL   60 (122)
T ss_pred             eEEEEEEc-CCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcc
Confidence            34445555 48999999975     3589999999999999999999999999999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=1.1e-18  Score=116.02  Aligned_cols=104  Identities=22%  Similarity=0.342  Sum_probs=66.5

Q ss_pred             eCCCcEEEEEEcC-CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeEeEEEEecc---
Q 033022           18 NSDSQIFVASRLN-VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGG---   93 (129)
Q Consensus        18 ~~~~~vLl~~r~~-~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   93 (129)
                      +.++++||++|.. .+|.|.+|||++++|||+.+||+||++||||+++..+.........|..+.... ....++..   
T Consensus        11 ~~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~~~~~   89 (131)
T cd04695          11 DKETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDNRI-LMAPVFVGFVP   89 (131)
T ss_pred             CCCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEeecCCceE-EEEEEEEEEec
Confidence            4567999999985 468999999999999999999999999999999643311100011122222111 11111111   


Q ss_pred             -------eeeeeeeeEEecccccCCCCccccccccc
Q 033022           94 -------EWHGQAQKWYASLLLLVPLTLSTHTHFMK  122 (129)
Q Consensus        94 -------~~~~~~~~W~~~~~~~~~~~~~~~~~~~~  122 (129)
                             ..+..+.+|++++.+...+..+.+..+++
T Consensus        90 ~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~  125 (131)
T cd04695          90 PHQEVVLNHEHTEYRWCSFAEALELAPFPGQRALYD  125 (131)
T ss_pred             CCCccccCchhcccEecCHHHHHHhcCChhHHHHHH
Confidence                   12346778998887776666666555443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=3.7e-18  Score=112.34  Aligned_cols=54  Identities=24%  Similarity=0.404  Sum_probs=46.7

Q ss_pred             CEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022           10 PNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus        10 ~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      ..|+++|++ ++++||++|.. .+.|.+|||++++|||+.+||+||++||||+++.
T Consensus         2 ~~~~~vi~~-~~~vLlv~~~~-~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~   55 (125)
T cd04689           2 LRARAIVRA-GNKVLLARVIG-QPHYFLPGGHVEPGETAENALRRELQEELGVAVS   55 (125)
T ss_pred             eEEEEEEEe-CCEEEEEEecC-CCCEECCCCcCCCCCCHHHHHHHHHHHHhCceee
Confidence            456677765 56999999875 5789999999999999999999999999999863

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=3.9e-18  Score=111.29  Aligned_cols=53  Identities=38%  Similarity=0.670  Sum_probs=46.4

Q ss_pred             EEEEEEEeCCCcEEEEEEcC--CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022           11 NVGVCLINSDSQIFVASRLN--VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus        11 ~~~~~i~~~~~~vLl~~r~~--~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      +++++++++ +++||++|.+  +++.|.+|||++++|||+++||.||++||||+++
T Consensus         2 ~v~~ii~~~-~~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~   56 (122)
T cd04673           2 AVGAVVFRG-GRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEA   56 (122)
T ss_pred             cEEEEEEEC-CEEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEe
Confidence            466677765 6999999985  3578999999999999999999999999999995

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=2.6e-18  Score=114.02  Aligned_cols=55  Identities=29%  Similarity=0.459  Sum_probs=46.5

Q ss_pred             cCEEEEEEEeCCCcEEEEEEcC--CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022            9 RPNVGVCLINSDSQIFVASRLN--VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus         9 ~~~~~~~i~~~~~~vLl~~r~~--~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      +.++++++++. +++||++|..  ..|.|++|||++++||++++||+||++||||+++
T Consensus        13 ~~~v~~ii~~~-~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~   69 (130)
T cd04511          13 KIIVGCVPEWE-GKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARV   69 (130)
T ss_pred             cEEEEEEEecC-CEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEE
Confidence            44555565555 7999999974  3479999999999999999999999999999985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=3.4e-18  Score=111.22  Aligned_cols=54  Identities=28%  Similarity=0.484  Sum_probs=47.7

Q ss_pred             EEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022           11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus        11 ~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      .+++++++.++++||++|.. .+.|.+|||++++|||+++||+||++||||+.+.
T Consensus         2 ~~~~~v~~~~~~vLl~~r~~-~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~   55 (118)
T cd04690           2 IAAALILVRDGRVLLVRKRG-TDVFYLPGGKIEAGETPLQALIRELSEELGLDLD   55 (118)
T ss_pred             eEEEEEEecCCeEEEEEECC-CCcEECCCCccCCCCCHHHHHHHHHHHHHCCccC
Confidence            35667778888999999875 5789999999999999999999999999999853

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=9.2e-18  Score=110.32  Aligned_cols=54  Identities=24%  Similarity=0.533  Sum_probs=48.1

Q ss_pred             cCEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022            9 RPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus         9 ~~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      +..|+++|+++ +++||++|.+ .|.|.+|||++++|||+.+||+||++||||+.+
T Consensus         2 ~~~v~~~i~~~-~~vLL~~~~~-~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~   55 (123)
T cd04672           2 KVDVRAAIFKD-GKILLVREKS-DGLWSLPGGWADVGLSPAENVVKEVKEETGLDV   55 (123)
T ss_pred             cceEEEEEEEC-CEEEEEEEcC-CCcEeCCccccCCCCCHHHHHHHHHHHHhCCee
Confidence            35677777776 7999999876 689999999999999999999999999999985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=8.1e-18  Score=110.86  Aligned_cols=52  Identities=29%  Similarity=0.508  Sum_probs=44.5

Q ss_pred             EEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022           11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus        11 ~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      .|.++++++ +++||++|.+ .+.|.+|||++++|||+.+||.||++||||+++
T Consensus         3 ~v~~vi~~~-~~vLl~~~~~-~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~   54 (126)
T cd04688           3 RAAAIIIHN-GKLLVQKNPD-ETFYRPPGGGIEFGESSEEALIREFKEELGLKI   54 (126)
T ss_pred             EEEEEEEEC-CEEEEEEeCC-CCeEECCCccccCCCCHHHHHHHHHHHHhCCce
Confidence            344555554 4999999876 679999999999999999999999999999985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=4e-18  Score=112.38  Aligned_cols=53  Identities=30%  Similarity=0.560  Sum_probs=45.4

Q ss_pred             EEEEEEEeCC---CcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022           11 NVGVCLINSD---SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus        11 ~~~~~i~~~~---~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      .+++++++.+   +++||++|.+ .+.|.+|||++++|||+.+||+||++||||++.
T Consensus         2 ~~g~v~~~~~~~~~~vLLv~~~~-~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~   57 (122)
T cd04666           2 QAGAIPYRETGGEVEVLLVTSRR-TGRWIVPKGGPEKDESPAEAAAREAWEEAGVRG   57 (122)
T ss_pred             EEEEEEEEEcCCceEEEEEEecC-CCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcc
Confidence            4566666543   6899999875 378999999999999999999999999999985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.77  E-value=3.7e-18  Score=113.90  Aligned_cols=58  Identities=33%  Similarity=0.466  Sum_probs=51.6

Q ss_pred             cCEEEEEEEeCCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceee
Q 033022            9 RPNVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE   66 (129)
Q Consensus         9 ~~~~~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~   66 (129)
                      +++|++++++.++++||+++.+   .++.|++|||++++|||+.+||+||++||||+.+..
T Consensus         2 ~~~v~v~~~~~~~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~   62 (137)
T cd03424           2 PDAVAVLPYDDDGKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGD   62 (137)
T ss_pred             CCEEEEEEEcCCCeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccc
Confidence            5789999999999999998764   246899999999999999999999999999999743

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=1.8e-18  Score=114.21  Aligned_cols=53  Identities=36%  Similarity=0.688  Sum_probs=48.0

Q ss_pred             EEEEEEEeCCCcEEEEEEcC----CCCcEEcC-eeecCCCCCHHHHHHHHHHHHhCCce
Q 033022           11 NVGVCLINSDSQIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus        11 ~~~~~i~~~~~~vLl~~r~~----~~g~w~~P-gG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      +|.+++++.+++|||++|..    ++|.|++| ||++++|||+ +||+||++||||+++
T Consensus         2 ~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~   59 (127)
T cd04693           2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLEL   59 (127)
T ss_pred             eEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCc
Confidence            67788899989999999884    46899998 8999999999 999999999999995

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.77  E-value=1.8e-18  Score=119.35  Aligned_cols=57  Identities=35%  Similarity=0.470  Sum_probs=52.1

Q ss_pred             cCEEEEEEEeCCCcEEEEEEcC----CCCcEEcC-eeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022            9 RPNVGVCLINSDSQIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         9 ~~~~~~~i~~~~~~vLl~~r~~----~~g~w~~P-gG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      |.+++++|++.++++||++|+.    +||.|++| ||++++|||+++||+||++||||+.+.
T Consensus        30 ~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~   91 (165)
T cd02885          30 HRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGD   91 (165)
T ss_pred             eeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCcc
Confidence            8889999999999999999984    57999996 899999999999999999999999963

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=2.2e-18  Score=116.28  Aligned_cols=57  Identities=30%  Similarity=0.570  Sum_probs=51.7

Q ss_pred             CcCEEEEEEEeCC---CcEEEEEEcC----CCCcEEc-CeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022            8 YRPNVGVCLINSD---SQIFVASRLN----VPGAWQM-PQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus         8 ~~~~~~~~i~~~~---~~vLl~~r~~----~~g~w~~-PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      +|+++.+.|++.+   +++|+++|+.    +||.|++ |||++++|||+.+||+||++||||+.+
T Consensus         1 ~h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~   65 (144)
T cd04692           1 WHRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDV   65 (144)
T ss_pred             CceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCC
Confidence            5789999999987   8999999984    5689999 599999999999999999999999974

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.76  E-value=4.4e-18  Score=116.61  Aligned_cols=55  Identities=33%  Similarity=0.593  Sum_probs=46.8

Q ss_pred             EEEEEEEeCC--CcEEEEEEcC----CCCcEEcCeeecCCC-CCHHHHHHHHHHHHhCCcee
Q 033022           11 NVGVCLINSD--SQIFVASRLN----VPGAWQMPQGGIEDG-EDPKLAAMRELREETGIVSA   65 (129)
Q Consensus        11 ~~~~~i~~~~--~~vLl~~r~~----~~g~w~~PgG~ve~g-Es~~~aa~RE~~EEtGl~~~   65 (129)
                      ++.+++.+.+  ++|||++|..    ++|.|++|||++++| ||+.+||+||++||||+++.
T Consensus         4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~   65 (157)
T cd03426           4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPD   65 (157)
T ss_pred             EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCcc
Confidence            4445555555  6899999985    468999999999999 99999999999999999964

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.76  E-value=3.2e-18  Score=114.00  Aligned_cols=56  Identities=32%  Similarity=0.488  Sum_probs=49.6

Q ss_pred             EEEEEEEeCCCcEEEEEEcCC-CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceee
Q 033022           11 NVGVCLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE   66 (129)
Q Consensus        11 ~~~~~i~~~~~~vLl~~r~~~-~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~   66 (129)
                      +|.+.+.+.++++||++|..+ +|.|++|||++++|||+.+||.||++||||+++..
T Consensus         2 ~v~i~l~~~~~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~   58 (131)
T cd03429           2 AVIVLVIDGGDRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKN   58 (131)
T ss_pred             eEEEEEEeCCCEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeee
Confidence            566777788789999999865 58999999999999999999999999999999643

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.75  E-value=1.7e-17  Score=110.37  Aligned_cols=97  Identities=29%  Similarity=0.345  Sum_probs=62.4

Q ss_pred             EEEEEEeCCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeEeE-
Q 033022           12 VGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKV-   87 (129)
Q Consensus        12 ~~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~-   87 (129)
                      +..++++.++++||++|.+   ++|.|++|||++++|||+.+||+||++||||+++.. .... ....+.+........ 
T Consensus         6 ~~~~ii~~~~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~-~~~~-~~~~~~~~~~~~~~~~   83 (135)
T PRK10546          6 VVAAIIERDGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATV-GEYV-ASHQREVSGRRIHLHA   83 (135)
T ss_pred             EEEEEEecCCEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCcccc-ceeE-EEEEEecCCcEEEEEE
Confidence            3334446678999999974   358999999999999999999999999999998532 1111 122344444322211 


Q ss_pred             --EEEeccee---eeeeeeEEecccccC
Q 033022           88 --NRLWGGEW---HGQAQKWYASLLLLV  110 (129)
Q Consensus        88 --~~~~~~~~---~~~~~~W~~~~~~~~  110 (129)
                        +..+.+..   +....+|++++.+..
T Consensus        84 ~~~~~~~~~~~~~e~~~~~W~~~~el~~  111 (135)
T PRK10546         84 WHVPDFHGELQAHEHQALVWCTPEEALR  111 (135)
T ss_pred             EEEEEecCcccccccceeEEcCHHHccc
Confidence              11111221   245678999876654

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.75  E-value=2.9e-17  Score=107.91  Aligned_cols=98  Identities=33%  Similarity=0.536  Sum_probs=65.8

Q ss_pred             CEEEEEEEeCCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeEe
Q 033022           10 PNVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTK   86 (129)
Q Consensus        10 ~~~~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   86 (129)
                      ..++++|.+.++++||+||..   ++|.|++|||++++||++.+||.||++||||+++... ... ....|.+++.... 
T Consensus         5 ~~~~~ii~~~~~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~-~~~-~~~~~~~~~~~~~-   81 (129)
T PRK10776          5 QIAVGIIRNPNNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHA-TLF-EKLEYEFPDRHIT-   81 (129)
T ss_pred             EEEEEEEECCCCEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecc-eEE-EEEEeeCCCcEEE-
Confidence            345556677778999999985   3589999999999999999999999999999985321 111 1234555554322 


Q ss_pred             EEEEec----cee---eeeeeeEEecccccC
Q 033022           87 VNRLWG----GEW---HGQAQKWYASLLLLV  110 (129)
Q Consensus        87 ~~~~~~----~~~---~~~~~~W~~~~~~~~  110 (129)
                      +..+..    +..   +..+.+|++.+.+..
T Consensus        82 ~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~  112 (129)
T PRK10776         82 LWFWLVESWEGEPWGKEGQPGRWVSQVALNA  112 (129)
T ss_pred             EEEEEEEEECCccCCccCCccEEecHHHCcc
Confidence            111111    111   234567998876654

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.75  E-value=8e-18  Score=117.77  Aligned_cols=58  Identities=26%  Similarity=0.359  Sum_probs=49.8

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcC----CCCcE-EcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022            8 YRPNVGVCLINSDSQIFVASRLN----VPGAW-QMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~----~~g~w-~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      .++++.++|+|.++++||++|..    +||.| .+|||++++|||+.+||+||++||||+.+.
T Consensus        36 ~h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~   98 (180)
T PRK15393         36 RHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGV   98 (180)
T ss_pred             ceEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCc
Confidence            46677788889889999999974    35666 589999999999999999999999999853

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.75  E-value=1.5e-17  Score=110.52  Aligned_cols=50  Identities=28%  Similarity=0.367  Sum_probs=43.6

Q ss_pred             EEEeCCCcEEEEEEcCC-CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022           15 CLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus        15 ~i~~~~~~vLl~~r~~~-~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      +++..++++||++|.+. ++.|.+|||++++|||+.+||.||++||||+++
T Consensus         5 ~ii~~~~~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~   55 (134)
T cd03675           5 AVVERDGRFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHV   55 (134)
T ss_pred             EEEEECCEEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCccc
Confidence            34455679999998864 368999999999999999999999999999996

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=2.4e-17  Score=108.36  Aligned_cols=56  Identities=32%  Similarity=0.600  Sum_probs=49.2

Q ss_pred             CEEEEEEEeCCCcEEEEEEcCC----CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022           10 PNVGVCLINSDSQIFVASRLNV----PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus        10 ~~~~~~i~~~~~~vLl~~r~~~----~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      .+++++|.++++++||++|...    +|.|++|||++++|||+.+||+||++||||+.+.
T Consensus         2 ~~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~   61 (129)
T cd04699           2 VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVT   61 (129)
T ss_pred             ceEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEE
Confidence            3667777787789999999852    6899999999999999999999999999999863

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=1.6e-17  Score=110.49  Aligned_cols=52  Identities=33%  Similarity=0.583  Sum_probs=46.1

Q ss_pred             EEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022           11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus        11 ~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      +|+++|+++ ++|||+++.+ .+.|.+|||++++|||+.+||+||++||||+.+
T Consensus         2 ~~~~ii~~~-~~vLLv~~~~-~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~   53 (131)
T cd04686           2 AVRAIILQG-DKILLLYTKR-YGDYKFPGGGVEKGEDHIEGLIRELQEETGATN   53 (131)
T ss_pred             cEEEEEEEC-CEEEEEEEcC-CCcEECccccCCCCCCHHHHHHHHHHHHHCCcc
Confidence            567777775 6999999876 468999999999999999999999999999985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.74  E-value=1.6e-17  Score=116.60  Aligned_cols=60  Identities=27%  Similarity=0.444  Sum_probs=52.8

Q ss_pred             CCcCEEEEEEEeCCCcEEEEEEcC----CCCcEEcC-eeecCCCCCHHHHHHHHHHHHhCCceee
Q 033022            7 GYRPNVGVCLINSDSQIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVSAE   66 (129)
Q Consensus         7 ~~~~~~~~~i~~~~~~vLl~~r~~----~~g~w~~P-gG~ve~gEs~~~aa~RE~~EEtGl~~~~   66 (129)
                      .+|+++++++++.+++|||+||+.    +||.|.+| ||++++|||+++||+||++||||+++..
T Consensus        32 ~~h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~   96 (184)
T PRK03759         32 PLHLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITD   96 (184)
T ss_pred             CeeeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccc
Confidence            378889999999999999999863    57889876 7999999999999999999999999643

>TIGR00586 mutt mutator mutT protein

Probab=99.73  E-value=4.3e-17  Score=107.25  Aligned_cols=101  Identities=24%  Similarity=0.243  Sum_probs=66.2

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCee
Q 033022            8 YRPNVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVK   84 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   84 (129)
                      .+..+++++++.++++||.+|..   .+|.|++|||++++|||+.+||+||++||||+++.. ... .....+.++....
T Consensus         3 ~~~~~~~ii~~~~~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~-~~~-~~~~~h~~~~~~~   80 (128)
T TIGR00586         3 LQQIAVGIIRNENGEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHF-SEF-EKLEYEFYPRHIT   80 (128)
T ss_pred             eEEEEEEEEECCCCEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccee-eeE-EEEEEEECCCcEE
Confidence            34456666678888999999975   358999999999999999999999999999998521 111 1123344444322


Q ss_pred             EeEEEE----eccee---eeeeeeEEecccccCC
Q 033022           85 TKVNRL----WGGEW---HGQAQKWYASLLLLVP  111 (129)
Q Consensus        85 ~~~~~~----~~~~~---~~~~~~W~~~~~~~~~  111 (129)
                      . +..+    ..+..   ......|++++.+...
T Consensus        81 ~-~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~  113 (128)
T TIGR00586        81 L-WFWLLERWEGGPPGKEGQPEEWWVLVGLLADD  113 (128)
T ss_pred             E-EEEEEEEEcCCCcCcccccccEEeCHHHCCcc
Confidence            1 1111    11111   2345689998766553

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=4e-17  Score=105.61  Aligned_cols=48  Identities=35%  Similarity=0.659  Sum_probs=42.7

Q ss_pred             EeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceee
Q 033022           17 INSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE   66 (129)
Q Consensus        17 ~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~   66 (129)
                      ...++++||++|..  |.|.+|||++++|||+.+||.||++||||+++..
T Consensus         7 ~~~~~~vLlv~r~~--~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~   54 (112)
T cd04667           7 CRRGGRVLLVRKSG--SRWALPGGKIEPGETPLQAARRELQEETGLQGLD   54 (112)
T ss_pred             EecCCEEEEEEcCC--CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccc
Confidence            34567999999875  8999999999999999999999999999998643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=4.9e-17  Score=109.98  Aligned_cols=55  Identities=38%  Similarity=0.621  Sum_probs=49.9

Q ss_pred             EEEEEEEeCCCcEEEEEEcC----CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022           11 NVGVCLINSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus        11 ~~~~~i~~~~~~vLl~~r~~----~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      .+++++++.++++||+||..    ++|.|++|||++++||++.+||+||++||+|+.+.
T Consensus         3 ~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~   61 (143)
T cd04694           3 GVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLD   61 (143)
T ss_pred             EEEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCcc
Confidence            57778889999999999984    56899999999999999999999999999999863

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.73  E-value=3.5e-17  Score=109.11  Aligned_cols=45  Identities=29%  Similarity=0.453  Sum_probs=40.3

Q ss_pred             CCcEEEEEEcCC-CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022           20 DSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus        20 ~~~vLl~~r~~~-~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      ++++||+++... .|.|.||||++|+|||+.+||+||++||||+.+
T Consensus        12 ~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v   57 (132)
T cd04661          12 DTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNL   57 (132)
T ss_pred             CcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCc
Confidence            468999998753 479999999999999999999999999999974

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.72  E-value=3.3e-17  Score=112.39  Aligned_cols=57  Identities=33%  Similarity=0.462  Sum_probs=50.7

Q ss_pred             CCcCEEEEEEEeCCCcEEEEEEcC----CCCcEEcC-eeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022            7 GYRPNVGVCLINSDSQIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         7 ~~~~~~~~~i~~~~~~vLl~~r~~----~~g~w~~P-gG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      -+|++++++|++.++++||+||+.    +||.|++| ||++++||  .+||+||++||||+++.
T Consensus        25 ~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~   86 (158)
T TIGR02150        25 PLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPAD   86 (158)
T ss_pred             CeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCcc
Confidence            378899999999999999999984    57999997 79999999  49999999999999863

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.70  E-value=1.3e-16  Score=117.17  Aligned_cols=100  Identities=21%  Similarity=0.251  Sum_probs=65.0

Q ss_pred             cCEEEEEEEeCCCcEEEEEEcCCC-CcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeE-e
Q 033022            9 RPNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT-K   86 (129)
Q Consensus         9 ~~~~~~~i~~~~~~vLl~~r~~~~-g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~-~   86 (129)
                      .++|.++| .+++++||++|.+.+ |.|++|||++|+|||+++||+||++||||+++..+....  ...+.++..... +
T Consensus       132 ~paViv~V-~~~~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~--s~~~~~p~~lm~~f  208 (256)
T PRK00241        132 APCIIVAV-RRGDEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVG--SQPWPFPHSLMLGF  208 (256)
T ss_pred             CCEEEEEE-EeCCEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEE--eEeecCCCeEEEEE
Confidence            34544444 455799999988644 899999999999999999999999999999864432211  112344433221 2


Q ss_pred             EEEEecce-----eeeeeeeEEecccccCC
Q 033022           87 VNRLWGGE-----WHGQAQKWYASLLLLVP  111 (129)
Q Consensus        87 ~~~~~~~~-----~~~~~~~W~~~~~~~~~  111 (129)
                      ...+..+.     .+..+.+||+++.++..
T Consensus       209 ~a~~~~~~~~~~~~Ei~~a~W~~~del~~l  238 (256)
T PRK00241        209 HADYDSGEIVFDPKEIADAQWFRYDELPLL  238 (256)
T ss_pred             EEEecCCcccCCcccEEEEEEECHHHCccc
Confidence            22222222     12357789998876543

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=2.4e-16  Score=105.37  Aligned_cols=55  Identities=42%  Similarity=0.697  Sum_probs=50.1

Q ss_pred             CEEEEEEEeCCCcEEEEEEcC----CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022           10 PNVGVCLINSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus        10 ~~~~~~i~~~~~~vLl~~r~~----~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      +++.+++++.+++|||+++.+    .++.|.+|||++++||++.+||.||++||||+.+
T Consensus         1 ~~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~   59 (133)
T cd04685           1 RAARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITV   59 (133)
T ss_pred             CeEEEEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCcc
Confidence            478899999999999998874    3479999999999999999999999999999986

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.69  E-value=2.3e-16  Score=120.12  Aligned_cols=54  Identities=31%  Similarity=0.540  Sum_probs=46.0

Q ss_pred             CEEEEEEEeCCCcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022           10 PNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus        10 ~~~~~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      .++.++|+. +++|||++|.+.  +|.|.+|||++++|||+++||+||++||||+++
T Consensus       204 vtv~avv~~-~g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v  259 (340)
T PRK05379        204 VTVDAVVVQ-SGHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKL  259 (340)
T ss_pred             eEEEEEEEE-CCEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcc
Confidence            455555554 579999999864  478999999999999999999999999999985

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.68  E-value=7.2e-16  Score=100.15  Aligned_cols=96  Identities=31%  Similarity=0.460  Sum_probs=63.9

Q ss_pred             EEEEEEEeCCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeEeE
Q 033022           11 NVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKV   87 (129)
Q Consensus        11 ~~~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   87 (129)
                      .+.+++.+.++++||++|.+   ++|.|++|||+++++|++.+||.||++||||+++... ... ....+.++.....  
T Consensus         3 ~~~~~i~~~~~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~-~~~-~~~~~~~~~~~~~--   78 (124)
T cd03425           3 VVAAIIIDDDGRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVG-ELL-ATVEHDYPDKRVT--   78 (124)
T ss_pred             EEEEEEECCCCEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEecc-ceE-EEEEeeCCCCeEE--
Confidence            34455667768999999874   4689999999999999999999999999999985321 111 1223444432221  


Q ss_pred             EEEecc-----e---eeeeeeeEEecccccC
Q 033022           88 NRLWGG-----E---WHGQAQKWYASLLLLV  110 (129)
Q Consensus        88 ~~~~~~-----~---~~~~~~~W~~~~~~~~  110 (129)
                      ..++..     .   .+.....|++++.+..
T Consensus        79 ~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~  109 (124)
T cd03425          79 LHVFLVELWSGEPQLLEHQELRWVPPEELDD  109 (124)
T ss_pred             EEEEEEeeeCCCcccccCceEEEeeHHHccc
Confidence            111111     1   1245678999876654

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=1.7e-15  Score=97.62  Aligned_cols=55  Identities=38%  Similarity=0.773  Sum_probs=48.9

Q ss_pred             EEEEEEEeCCCcEEEEEEcCC-CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022           11 NVGVCLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus        11 ~~~~~i~~~~~~vLl~~r~~~-~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      ++++++++.++++||++|... +|.|.+|+|+++.||++.+||+||+.||+|+.+.
T Consensus         2 ~~~~i~~~~~~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~   57 (123)
T cd02883           2 AVGAVILDEDGRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVD   57 (123)
T ss_pred             ceEEEEECCCCCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccce
Confidence            567777788789999999863 6899999999999999999999999999999853

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.66  E-value=6.9e-16  Score=108.36  Aligned_cols=57  Identities=30%  Similarity=0.423  Sum_probs=48.5

Q ss_pred             EEEEEEEeCCCcEEEEEEcCC---CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeE
Q 033022           11 NVGVCLINSDSQIFVASRLNV---PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI   67 (129)
Q Consensus        11 ~~~~~i~~~~~~vLl~~r~~~---~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~   67 (129)
                      +|.++.+++++++||+++.+.   .+.|++|||.+|+||++++||+||++||||+.+..+
T Consensus        49 ~v~v~~~~~~~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l  108 (185)
T PRK11762         49 AVMIVPILDDDTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQL  108 (185)
T ss_pred             EEEEEEEeCCCEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcce
Confidence            566666777789999998753   357999999999999999999999999999996443

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.64  E-value=3e-15  Score=105.62  Aligned_cols=59  Identities=20%  Similarity=0.286  Sum_probs=46.5

Q ss_pred             CcCEEEEEEEe--CCCcEEEEEEcC----CCCcEEcCeeecCCC-CCHHHHHHHHHHHHhCCceee
Q 033022            8 YRPNVGVCLIN--SDSQIFVASRLN----VPGAWQMPQGGIEDG-EDPKLAAMRELREETGIVSAE   66 (129)
Q Consensus         8 ~~~~~~~~i~~--~~~~vLl~~r~~----~~g~w~~PgG~ve~g-Es~~~aa~RE~~EEtGl~~~~   66 (129)
                      .+.++.++.+.  .++.+||.+|+.    ++|.|+||||++|++ |++++||+||++||||+....
T Consensus        29 ~~~aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~   94 (190)
T PRK10707         29 QRQAAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSA   94 (190)
T ss_pred             CCCeEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccc
Confidence            45566666452  345899988773    458999999999985 689999999999999999643

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.64  E-value=3.5e-15  Score=97.90  Aligned_cols=52  Identities=33%  Similarity=0.484  Sum_probs=43.8

Q ss_pred             EEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceee
Q 033022           12 VGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE   66 (129)
Q Consensus        12 ~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~   66 (129)
                      |.+++++ ++++||+++..  +.|.+|||++++||++++||+||++||||+.+..
T Consensus         3 v~vi~~~-~~~vLl~~~~~--~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~   54 (118)
T cd04665           3 VLVICFY-DDGLLLVRHKD--RGWEFPGGHVEPGETIEEAARREVWEETGAELGS   54 (118)
T ss_pred             EEEEEEE-CCEEEEEEeCC--CEEECCccccCCCCCHHHHHHHHHHHHHCCccCc
Confidence            4445555 46999998873  6799999999999999999999999999999633

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.63  E-value=1.1e-14  Score=95.53  Aligned_cols=53  Identities=38%  Similarity=0.345  Sum_probs=42.5

Q ss_pred             EEEEEEEeCCCcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022           11 NVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus        11 ~~~~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      .+++++...+ ++||++|...  +|.|.+|||++++|||+.+||+||++||||+++
T Consensus         6 ~av~vl~~~~-~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~   60 (118)
T cd04674           6 VVVALLPVDD-GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAV   60 (118)
T ss_pred             EEEEEEEECC-CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcc
Confidence            4444454544 5677677643  489999999999999999999999999999985

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK08999 hypothetical protein; Provisional

Probab=99.61  E-value=5.4e-15  Score=111.10  Aligned_cols=100  Identities=29%  Similarity=0.384  Sum_probs=67.5

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCee
Q 033022            8 YRPNVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVK   84 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   84 (129)
                      .+..++++|++.++++||.||..   ++|.|++|||++++||++.+||.||++||||+.+.... .. ....+.++....
T Consensus         4 ~~~~~~~vi~~~~~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~-~l-~~~~h~~~~~~~   81 (312)
T PRK08999          4 RIHVAAGVIRDADGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAAR-PL-ITVRHDYPDKRV   81 (312)
T ss_pred             eeEEEEEEEECCCCeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecce-eE-EEEEEEcCCCeE
Confidence            44556666777778999999974   45899999999999999999999999999999853221 11 123445554432


Q ss_pred             EeEEEEec----cee---eeeeeeEEecccccC
Q 033022           85 TKVNRLWG----GEW---HGQAQKWYASLLLLV  110 (129)
Q Consensus        85 ~~~~~~~~----~~~---~~~~~~W~~~~~~~~  110 (129)
                      . +..|..    +..   +....+|++.+.+..
T Consensus        82 ~-i~~y~~~~~~~~~~~~e~~~~~Wv~~~el~~  113 (312)
T PRK08999         82 R-LDVRRVTAWQGEPHGREGQPLAWVAPDELAV  113 (312)
T ss_pred             E-EEEEEEEEecCcccCccCCccEEecHHHccc
Confidence            2 222221    111   245668999876654

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.61  E-value=8.9e-15  Score=96.70  Aligned_cols=55  Identities=36%  Similarity=0.626  Sum_probs=44.9

Q ss_pred             EEEEEEEeCC---CcEEEEEEc------CCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022           11 NVGVCLINSD---SQIFVASRL------NVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus        11 ~~~~~i~~~~---~~vLl~~r~------~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      ++++++++.+   .+|||++|.      ...+.|++|||+++.||++.+||+||++||||+.+.
T Consensus         2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~   65 (126)
T cd04662           2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD   65 (126)
T ss_pred             eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence            5667766432   369999863      335889999999999999999999999999999853

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.61  E-value=1.6e-14  Score=95.63  Aligned_cols=52  Identities=33%  Similarity=0.540  Sum_probs=41.7

Q ss_pred             EEEEEEEeCCC--cEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022           11 NVGVCLINSDS--QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus        11 ~~~~~i~~~~~--~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      .|.++|.+.++  ++|+.+...  +.|.+|||++++|||+.+||+||++||||+.+
T Consensus         2 ~~~~~~~~~~~~~~ll~~r~~~--~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~   55 (126)
T cd04663           2 KCPAVLRRNGEVLELLVFEHPL--AGFQIVKGTVEPGETPEAAALRELQEESGLPS   55 (126)
T ss_pred             EEEEEEEeCCceEEEEEEEcCC--CcEECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence            35555555554  666665543  56999999999999999999999999999995

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]

Probab=99.60  E-value=2.5e-15  Score=99.93  Aligned_cols=60  Identities=35%  Similarity=0.622  Sum_probs=53.4

Q ss_pred             CCCCcCEEEEEEEeCCC---cEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022            5 PSGYRPNVGVCLINSDS---QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus         5 ~~~~~~~~~~~i~~~~~---~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      |+|+|..++++++..++   +|||+..++.+-.|.+|+|++|++|+..+||.||+.||.|+.-
T Consensus         5 ~~G~r~vagCi~~r~~~~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G   67 (145)
T KOG2839|consen    5 PAGFRLVAGCICYRSDKEKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKG   67 (145)
T ss_pred             CCCcEEEEEeeeeeecCcceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCcee
Confidence            47899988888776554   7999999887778999999999999999999999999999983

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.60  E-value=5.8e-15  Score=103.10  Aligned_cols=58  Identities=26%  Similarity=0.465  Sum_probs=49.6

Q ss_pred             CcCEEEEE--EEeCC--CcEEEEEEcC----CCCcE-EcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022            8 YRPNVGVC--LINSD--SQIFVASRLN----VPGAW-QMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         8 ~~~~~~~~--i~~~~--~~vLl~~r~~----~~g~w-~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      +|+++.+.  +.|.+  +++|++||+.    +||.| .+|+|++++|||+.+||+||++||||++..
T Consensus        31 ~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~   97 (180)
T cd03676          31 VTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPED   97 (180)
T ss_pred             eEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHH
Confidence            67778864  44655  7999999994    68999 599999999999999999999999999853

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.59  E-value=6.5e-15  Score=103.53  Aligned_cols=59  Identities=24%  Similarity=0.372  Sum_probs=48.9

Q ss_pred             cCEEEEEEEeCC-CcEEEEEEcC--------CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeE
Q 033022            9 RPNVGVCLINSD-SQIFVASRLN--------VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI   67 (129)
Q Consensus         9 ~~~~~~~i~~~~-~~vLl~~r~~--------~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~   67 (129)
                      ..+|++++++.+ +++||+++.+        .+..|++|+|++++||++++||+||++||||+.+..+
T Consensus        44 ~~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~  111 (185)
T TIGR00052        44 GNAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNL  111 (185)
T ss_pred             CCeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecce
Confidence            346777777654 7999999875        2357899999999999999999999999999997544

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.57  E-value=3.3e-14  Score=101.19  Aligned_cols=59  Identities=20%  Similarity=0.280  Sum_probs=49.3

Q ss_pred             CEEEEEEEeCC-CcEEEEEEcCCC--------CcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEE
Q 033022           10 PNVGVCLINSD-SQIFVASRLNVP--------GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII   68 (129)
Q Consensus        10 ~~~~~~i~~~~-~~vLl~~r~~~~--------g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~   68 (129)
                      .+|+++.++.+ ++++|+++.+.+        -.|++|+|.+|+||++++||+||+.||||+.+..+.
T Consensus        50 ~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~  117 (202)
T PRK10729         50 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTK  117 (202)
T ss_pred             CeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEE
Confidence            46777777764 799999998754        259999999999999999999999999999975543

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.57  E-value=3.6e-14  Score=97.08  Aligned_cols=55  Identities=33%  Similarity=0.431  Sum_probs=44.4

Q ss_pred             CEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeE
Q 033022           10 PNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI   67 (129)
Q Consensus        10 ~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~   67 (129)
                      ..|.++.+.+ +++||+++..  ..|++|||++|+|||+++||+||++||||+.+..+
T Consensus        25 ~~V~ii~~~~-~~~LL~~~~~--~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~   79 (156)
T TIGR02705        25 NHVLVIPRYK-DQWLLTEHKR--RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKEL   79 (156)
T ss_pred             CEEEEEEEEC-CEEEEEEEcC--CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeee
Confidence            3555555554 4899988765  45999999999999999999999999999986433

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>PLN02709 nudix hydrolase

Probab=99.50  E-value=2e-13  Score=97.93  Aligned_cols=53  Identities=28%  Similarity=0.483  Sum_probs=44.6

Q ss_pred             CcEEEEEEcC----CCCcEEcCeeecCCC-CCHHHHHHHHHHHHhCCce--eeEEeecCc
Q 033022           21 SQIFVASRLN----VPGAWQMPQGGIEDG-EDPKLAAMRELREETGIVS--AEIIAEVPN   73 (129)
Q Consensus        21 ~~vLl~~r~~----~~g~w~~PgG~ve~g-Es~~~aa~RE~~EEtGl~~--~~~~~~~~~   73 (129)
                      .++||.+|+.    ++|.|+||||++|++ +++.+||+||+.||+|+..  ..+++.+..
T Consensus        51 ~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~  110 (222)
T PLN02709         51 LRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEP  110 (222)
T ss_pred             eEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCC
Confidence            3899999985    579999999999997 5789999999999999986  355655554

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.45  E-value=2.7e-13  Score=89.39  Aligned_cols=54  Identities=37%  Similarity=0.604  Sum_probs=43.8

Q ss_pred             EEEEEEeCC-CcEEEEEEcCCCCcEEcCeeecCCCCCHHH-HHHHHHHHHhCCcee
Q 033022           12 VGVCLINSD-SQIFVASRLNVPGAWQMPQGGIEDGEDPKL-AAMRELREETGIVSA   65 (129)
Q Consensus        12 ~~~~i~~~~-~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~-aa~RE~~EEtGl~~~   65 (129)
                      +.+++.... +++|+.+|....+.|.+|||++++||++.+ ||+||++||||+.+.
T Consensus        14 ~~~~~~~~~~~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~   69 (161)
T COG0494          14 VAVLVGRDGPGEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVK   69 (161)
T ss_pred             EEEEEecCCCCEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeee
Confidence            333333333 789999988744599999999999999998 999999999999864

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]

Probab=99.44  E-value=3.4e-13  Score=99.89  Aligned_cols=61  Identities=34%  Similarity=0.438  Sum_probs=48.9

Q ss_pred             CcCEEEEEEEeCCCcE-EEEEEcC-CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEE
Q 033022            8 YRPNVGVCLINSDSQI-FVASRLN-VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII   68 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~v-Ll~~r~~-~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~   68 (129)
                      .-+.|.++|++.+++. ||.|..+ .+|.|..++|.+|+|||++|||+||++||||+++..+.
T Consensus       186 ~dPvVIm~li~~d~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~  248 (345)
T KOG3084|consen  186 TDPVVIMLLIDHDGKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVIS  248 (345)
T ss_pred             CCCeEEEEEEcCCCCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEe
Confidence            4456777888888654 5555444 34899999999999999999999999999999975543

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=99.44  E-value=1.2e-12  Score=91.86  Aligned_cols=41  Identities=29%  Similarity=0.489  Sum_probs=37.7

Q ss_pred             cEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCc
Q 033022           22 QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV   63 (129)
Q Consensus        22 ~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~   63 (129)
                      ++|+++|.. .|.|.+|||++++||++.+||.||++||||+.
T Consensus        50 ~vLl~~r~~-~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~   90 (186)
T cd03670          50 QFVAIKRPD-SGEWAIPGGMVDPGEKISATLKREFGEEALNS   90 (186)
T ss_pred             EEEEEEeCC-CCcCcCCeeeccCCCCHHHHHHHHHHHHHccc
Confidence            788899875 68999999999999999999999999999764

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.42  E-value=1.8e-12  Score=91.51  Aligned_cols=59  Identities=19%  Similarity=0.322  Sum_probs=47.8

Q ss_pred             CEEEEEEEeC-CCcEEEEEEcCCC-------C--cEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEe
Q 033022           10 PNVGVCLINS-DSQIFVASRLNVP-------G--AWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIA   69 (129)
Q Consensus        10 ~~~~~~i~~~-~~~vLl~~r~~~~-------g--~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~   69 (129)
                      .+|++++++. +++++|+++.+.+       +  .|++|+|.+++| ++++||+||++||||+.+..+..
T Consensus        46 ~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~  114 (191)
T PRK15009         46 NGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRK  114 (191)
T ss_pred             CEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEE
Confidence            4677777776 5799999998744       3  489999999976 79999999999999999755543

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=99.42  E-value=2.8e-13  Score=99.50  Aligned_cols=99  Identities=26%  Similarity=0.399  Sum_probs=68.3

Q ss_pred             CEEEEEEEeCCCcEEEEEEcC-CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeE-eE
Q 033022           10 PNVGVCLINSDSQIFVASRLN-VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT-KV   87 (129)
Q Consensus        10 ~~~~~~i~~~~~~vLl~~r~~-~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~-~~   87 (129)
                      ++|-+++++.+ ++||.++.+ .+|.+++-+|.||+|||+++|+.||++||+|+++.++....++  .+.||...+. .+
T Consensus       145 P~vIv~v~~~~-~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~SQ--PWPfP~SLMigf~  221 (279)
T COG2816         145 PCVIVAVIRGD-EILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQ--PWPFPHSLMLGFM  221 (279)
T ss_pred             CeEEEEEecCC-ceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEecc--CCCCchhhhhhhe
Confidence            35555555554 577777775 5699999999999999999999999999999998665433332  3466665443 33


Q ss_pred             EEEecceee-----eeeeeEEecccccCC
Q 033022           88 NRLWGGEWH-----GQAQKWYASLLLLVP  111 (129)
Q Consensus        88 ~~~~~~~~~-----~~~~~W~~~~~~~~~  111 (129)
                      ..+-.+++.     -.+.+||..+..-..
T Consensus       222 aey~sgeI~~d~~Eleda~WFs~~evl~~  250 (279)
T COG2816         222 AEYDSGEITPDEGELEDARWFSRDEVLPA  250 (279)
T ss_pred             eeeccccccCCcchhhhccccCHhHHhhh
Confidence            344444433     256799998873333

>PLN02791 Nudix hydrolase homolog

Probab=99.33  E-value=2.7e-12  Score=105.69  Aligned_cols=57  Identities=33%  Similarity=0.651  Sum_probs=52.6

Q ss_pred             CcCEEEEEEEeC-CCcEEEEEEcC----CCCcEEc-CeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022            8 YRPNVGVCLINS-DSQIFVASRLN----VPGAWQM-PQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus         8 ~~~~~~~~i~~~-~~~vLl~~r~~----~~g~w~~-PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      +|+++.++|++. ++++||+||+.    +||.|++ ||||++.|||..+||+||++||+|+.+
T Consensus        31 ~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l   93 (770)
T PLN02791         31 YHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIIL   93 (770)
T ss_pred             ceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCC
Confidence            888999999996 58999999984    7899998 799999999999999999999999984

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=99.33  E-value=3.2e-12  Score=93.35  Aligned_cols=58  Identities=29%  Similarity=0.338  Sum_probs=47.9

Q ss_pred             CCcCEEEEEEEeCCCcEEEEEEcC----CCCcEEcC-eeecCCCCC-----------------HHHHHHHHHHHHhCCce
Q 033022            7 GYRPNVGVCLINSDSQIFVASRLN----VPGAWQMP-QGGIEDGED-----------------PKLAAMRELREETGIVS   64 (129)
Q Consensus         7 ~~~~~~~~~i~~~~~~vLl~~r~~----~~g~w~~P-gG~ve~gEs-----------------~~~aa~RE~~EEtGl~~   64 (129)
                      -+|+++.++|+|.++++||+||+.    +||.|+.. +|++..||+                 ..+||+||++||||+..
T Consensus        54 l~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~  133 (247)
T PLN02552         54 LLHRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPA  133 (247)
T ss_pred             ceEEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCCc
Confidence            388999999999999999999984    68999665 355555422                 68999999999999984

>PLN03143 nudix hydrolase; Provisional

Probab=99.24  E-value=2.3e-11  Score=90.62  Aligned_cols=55  Identities=33%  Similarity=0.528  Sum_probs=44.1

Q ss_pred             CEEEEEEE-eCCCc--EEEEEEcCCC---CcEEcCeeecCC-CCCHHHHHHHHHHHHhCCce
Q 033022           10 PNVGVCLI-NSDSQ--IFVASRLNVP---GAWQMPQGGIED-GEDPKLAAMRELREETGIVS   64 (129)
Q Consensus        10 ~~~~~~i~-~~~~~--vLl~~r~~~~---g~w~~PgG~ve~-gEs~~~aa~RE~~EEtGl~~   64 (129)
                      .+|+++++ +.+++  ++|+++.+.+   -.|++|+|.+|+ +|++.+||+||++||||+.+
T Consensus       129 ~aVaVL~~l~~~ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~  190 (291)
T PLN03143        129 PAVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKL  190 (291)
T ss_pred             CeEEEEEEEeCCCCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCcc
Confidence            35666554 54455  8999998744   368999999998 48999999999999999974

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=99.10  E-value=1.2e-09  Score=70.44  Aligned_cols=93  Identities=17%  Similarity=0.280  Sum_probs=58.8

Q ss_pred             EEEEEEeCCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeEeEE
Q 033022           12 VGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN   88 (129)
Q Consensus        12 ~~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (129)
                      +.++++..++++||.||..   ++|.|+||+|.++.+|+.+++..|++.+|.++. ....    ..+.|.|++.... +.
T Consensus         5 ~~~~ii~~~~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~H~fth~~~~-~~   78 (118)
T cd03431           5 IAVVVIRNDGRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRLS-LEPL----GTVKHTFTHFRLT-LH   78 (118)
T ss_pred             EEEEEEecCCeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCcc-cccc----eeEEEecCCeEEE-EE
Confidence            3444445568999999975   569999999999999999999999999997641 1111    1234555544322 22


Q ss_pred             EEecce----eeeeeeeEEecccccC
Q 033022           89 RLWGGE----WHGQAQKWYASLLLLV  110 (129)
Q Consensus        89 ~~~~~~----~~~~~~~W~~~~~~~~  110 (129)
                      .+....    ....+..|++.+.+..
T Consensus        79 ~~~~~~~~~~~~~~~~~W~~~eel~~  104 (118)
T cd03431          79 VYLARLEGDLLAPDEGRWVPLEELDE  104 (118)
T ss_pred             EEEEEEeCCCcCccccEEccHHHHhh
Confidence            121111    1245668888765543

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]

Probab=99.05  E-value=3e-09  Score=74.41  Aligned_cols=59  Identities=37%  Similarity=0.594  Sum_probs=45.8

Q ss_pred             CEEEEE-EEeCCC--cEEEEEEcCCC-Cc--EEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEe
Q 033022           10 PNVGVC-LINSDS--QIFVASRLNVP-GA--WQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIA   69 (129)
Q Consensus        10 ~~~~~~-i~~~~~--~vLl~~r~~~~-g~--w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~   69 (129)
                      .+|+++ ++..+|  .++|+++.+.| |.  .++|+|-++.||++++||+||++||||+. ..+..
T Consensus        74 dgVaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~-gkv~~  138 (225)
T KOG3041|consen   74 DGVAILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYK-GKVDM  138 (225)
T ss_pred             CeEEEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCcc-ceeee
Confidence            356664 444455  57888887755 54  58899999999999999999999999999 54443

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]

Probab=98.99  E-value=3.1e-09  Score=76.16  Aligned_cols=54  Identities=22%  Similarity=0.314  Sum_probs=43.8

Q ss_pred             EEEEEEEeC-C--CcEEEEEEcC----CCCcEEcCeeecCCC-CCHHHHHHHHHHHHhCCce
Q 033022           11 NVGVCLINS-D--SQIFVASRLN----VPGAWQMPQGGIEDG-EDPKLAAMRELREETGIVS   64 (129)
Q Consensus        11 ~~~~~i~~~-~--~~vLl~~r~~----~~g~w~~PgG~ve~g-Es~~~aa~RE~~EEtGl~~   64 (129)
                      +|.+++++. +  -++||.||+.    ++|.-+||||+.++. +|..++|.||++||.|++.
T Consensus        45 aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~  106 (246)
T KOG3069|consen   45 AVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDP  106 (246)
T ss_pred             cEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCH
Confidence            444455555 2  3789999984    679999999999985 6778899999999999995

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=98.93  E-value=1.5e-09  Score=74.63  Aligned_cols=58  Identities=28%  Similarity=0.328  Sum_probs=53.0

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcC----CCCcEEc-CeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022            8 YRPNVGVCLINSDSQIFVASRLN----VPGAWQM-PQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~----~~g~w~~-PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      .|++.++.|+|.+|++||.||+.    +||.|.- ..||--+|||..+|++|-+.+|+|+.+.
T Consensus        32 LHrAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~   94 (185)
T COG1443          32 LHRAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPD   94 (185)
T ss_pred             HHhhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCc
Confidence            68999999999999999999983    7899965 6699999999999999999999999975

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]

Probab=98.93  E-value=1.6e-09  Score=80.27  Aligned_cols=57  Identities=37%  Similarity=0.725  Sum_probs=50.7

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcC----CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022            8 YRPNVGVCLINSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~----~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      .+.++++.++|.+++||+++..+    ..|.|-+|+|.|+++|++.++|+||++||||++.
T Consensus       114 h~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~  174 (295)
T KOG0648|consen  114 HRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDT  174 (295)
T ss_pred             hheeeeeeEecCCceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcch
Confidence            66788889999999999988643    3489999999999999999999999999999874

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=98.66  E-value=5.6e-08  Score=63.76  Aligned_cols=56  Identities=38%  Similarity=0.634  Sum_probs=44.4

Q ss_pred             cCEEEEEEEeCC-C--cEEEEEEcC------CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022            9 RPNVGVCLINSD-S--QIFVASRLN------VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus         9 ~~~~~~~i~~~~-~--~vLl~~r~~------~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      +..+++++.... +  .|||++--.      ..|.|++|+|....||++..||+||.-||+|+.+
T Consensus         3 K~SAGvLlYR~~aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~v   67 (161)
T COG4119           3 KLSAGVLLYRARAGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICV   67 (161)
T ss_pred             cccceeEEEEecCCCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceee
Confidence            356777776543 4  566665432      3389999999999999999999999999999986

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=98.24  E-value=6.4e-06  Score=53.17  Aligned_cols=91  Identities=18%  Similarity=0.276  Sum_probs=48.1

Q ss_pred             EEEEeCCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeEeEEEE
Q 033022           14 VCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRL   90 (129)
Q Consensus        14 ~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (129)
                      +++++.++++||.||..   ++|.|+||.--++. ++..+.+.+.+.+..|+.+... . ....+.|.|.+.... +. .
T Consensus         2 ~~i~~~~~~~Ll~kRp~~gll~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~-~-~~~~v~H~fSH~~~~-~~-~   76 (114)
T PF14815_consen    2 LLIIRSQGRVLLEKRPEKGLLAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSV-E-PLGTVKHVFSHRRWT-IH-V   76 (114)
T ss_dssp             EEEEETTSEEEEEE--SSSTTTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE--S--SEEEEEE-SSEEEE-EE-E
T ss_pred             EEEEEeCCEEEEEECCCCChhhcCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhh-e-ecCcEEEEccceEEE-EE-E
Confidence            57788899999999996   45999999988774 4345556666667778764221 1 222445666654332 11 1


Q ss_pred             ecceee------eeeeeEEeccccc
Q 033022           91 WGGEWH------GQAQKWYASLLLL  109 (129)
Q Consensus        91 ~~~~~~------~~~~~W~~~~~~~  109 (129)
                      +.....      .....|++.+...
T Consensus        77 ~~~~~~~~~~~~~~~~~W~~~~~l~  101 (114)
T PF14815_consen   77 YEVEVSADPPAEPEEGQWVSLEELD  101 (114)
T ss_dssp             EEEEEE-SS----TTEEEEEGGGGG
T ss_pred             EEEEecCCCCCCCCCcEEEEHHHHh
Confidence            111111      4567888877654

>PLN02839 nudix hydrolase

Probab=98.19  E-value=2.5e-06  Score=65.37  Aligned_cols=44  Identities=25%  Similarity=0.433  Sum_probs=38.9

Q ss_pred             CcEEEEEEcC----CCCcE-EcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022           21 SQIFVASRLN----VPGAW-QMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus        21 ~~vLl~~r~~----~~g~w-~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      .++.+.||+.    +||.| .+.+|++..||++.++++||+.||.|+..
T Consensus       218 ~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~  266 (372)
T PLN02839        218 KFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISK  266 (372)
T ss_pred             eEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCH
Confidence            5788888884    78999 55789999999999999999999999973

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]

Probab=98.13  E-value=2.5e-06  Score=60.96  Aligned_cols=38  Identities=29%  Similarity=0.594  Sum_probs=34.0

Q ss_pred             cEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHh
Q 033022           22 QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET   60 (129)
Q Consensus        22 ~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEt   60 (129)
                      +++.++|.+ .|.|.+|||-+++||.+..+++||+.||.
T Consensus       140 e~vavkr~d-~~~WAiPGGmvdpGE~vs~tLkRef~eEa  177 (275)
T KOG4195|consen  140 EFVAVKRPD-NGEWAIPGGMVDPGEKVSATLKREFGEEA  177 (275)
T ss_pred             EEEEEecCC-CCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence            566678775 68999999999999999999999999996

>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]

Probab=97.70  E-value=6e-06  Score=62.07  Aligned_cols=54  Identities=26%  Similarity=0.502  Sum_probs=45.0

Q ss_pred             EEEEEEEeCC-CcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022           11 NVGVCLINSD-SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus        11 ~~~~~i~~~~-~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      ..++.++|.. .++||++... ...|.+|.|++...|+-.+||+||+.||||.+..
T Consensus        84 v~ga~ild~~~sr~llv~g~q-a~sw~fprgK~~kdesd~~caiReV~eetgfD~s  138 (348)
T KOG2937|consen   84 VRGAIILDEKRSRCLLVKGWQ-ASSWSFPRGKISKDESDSDCAIREVTEETGFDYS  138 (348)
T ss_pred             CchHhhhhhhhhhhheeecee-cccccccCccccccchhhhcchhcccchhhcCHH
Confidence            4455677765 5888888775 3459999999999999999999999999999963

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=97.51  E-value=0.0006  Score=47.95  Aligned_cols=55  Identities=24%  Similarity=0.360  Sum_probs=39.2

Q ss_pred             CCcCEEEEEEE-eCCC--cEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCc
Q 033022            7 GYRPNVGVCLI-NSDS--QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV   63 (129)
Q Consensus         7 ~~~~~~~~~i~-~~~~--~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~   63 (129)
                      |.|+.|.+|++ ...+  .|||.|...  ..|.+|||.+.+||+..++++|.+.+-.|..
T Consensus        41 GmRrsVe~Vllvh~h~~PHvLLLq~~~--~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~   98 (188)
T PF13869_consen   41 GMRRSVEGVLLVHEHGHPHVLLLQIGN--TFFKLPGGRLRPGEDEIEGLKRKLTEKLSPE   98 (188)
T ss_dssp             SSEEEEEEEEEEEETTEEEEEEEEETT--TEEE-SEEE--TT--HHHHHHHHHHHHHB-S
T ss_pred             CCceEEEEEEEEecCCCcEEEEEeccC--ccccCCccEeCCCCChhHHHHHHHHHHcCCC
Confidence            56777776554 4433  689988654  5899999999999999999999999999986

...

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.75  E-value=0.00066  Score=48.07  Aligned_cols=58  Identities=28%  Similarity=0.465  Sum_probs=45.0

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcC----CCCcEEcC-eee-------cCC--CCCHHHHHHHHHHHHhCCcee
Q 033022            8 YRPNVGVCLINSDSQIFVASRLN----VPGAWQMP-QGG-------IED--GEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~----~~g~w~~P-gG~-------ve~--gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      .|++.++++++.++++||++|+.    +|+.|+-- .++       .+.  +.....||+|-++-|+|+...
T Consensus        51 LHRaFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e  122 (225)
T KOG0142|consen   51 LHRAFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLE  122 (225)
T ss_pred             hhheeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCcc
Confidence            68899999999999999999985    67888431 122       221  236789999999999999853

>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]

Probab=96.50  E-value=0.007  Score=41.91  Aligned_cols=57  Identities=26%  Similarity=0.369  Sum_probs=43.7

Q ss_pred             CCCCcCEEEEEEE-eCC--CcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCc
Q 033022            5 PSGYRPNVGVCLI-NSD--SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV   63 (129)
Q Consensus         5 ~~~~~~~~~~~i~-~~~--~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~   63 (129)
                      ..|.|+.|-.+++ .+.  ..|||.+-..  -.+-+|||.+++||+-.+.+.|-+-|-+|-.
T Consensus        65 k~gmRrsvegvlivheH~lPHvLLLQig~--tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lgr~  124 (221)
T KOG1689|consen   65 KEGMRRSVEGVLIVHEHNLPHVLLLQIGN--TFFKLPGGRLRPGEDEADGLKRLLTESLGRS  124 (221)
T ss_pred             hhhhhheeeeeEEEeecCCCeEEEEeeCC--EEEecCCCccCCCcchhHHHHHHHHHHhccc
Confidence            3566777766544 333  4788877542  4789999999999999999999999999943

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=95.75  E-value=0.017  Score=43.46  Aligned_cols=54  Identities=26%  Similarity=0.436  Sum_probs=43.1

Q ss_pred             EEEEEEEeCC-CcEEEEEEcC--------CC-------------------C-cEEcCeeecCCCCCHHHHHHHHHHHHhC
Q 033022           11 NVGVCLINSD-SQIFVASRLN--------VP-------------------G-AWQMPQGGIEDGEDPKLAAMRELREETG   61 (129)
Q Consensus        11 ~~~~~i~~~~-~~vLl~~r~~--------~~-------------------g-~w~~PgG~ve~gEs~~~aa~RE~~EEtG   61 (129)
                      .|++++++.+ .++|++|+-+        .+                   | ..++.+|-|+..-|+.+-|..|+.||.|
T Consensus        28 ~v~ill~~r~~eq~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~eev~eecg  107 (405)
T KOG4432|consen   28 SVSILLFHRDLEQFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIASEEVAEECG  107 (405)
T ss_pred             ceEEEEEccchhhhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccccCHHHHhHHHHHHHhC
Confidence            6777888776 5788877652        01                   1 3578899999999999999999999999


Q ss_pred             Cce
Q 033022           62 IVS   64 (129)
Q Consensus        62 l~~   64 (129)
                      +.+
T Consensus       108 y~v  110 (405)
T KOG4432|consen  108 YRV  110 (405)
T ss_pred             CcC
Confidence            996

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=95.27  E-value=0.059  Score=37.20  Aligned_cols=53  Identities=21%  Similarity=0.378  Sum_probs=36.3

Q ss_pred             EEEEEEEeCCCcEEEEEEcCCC------CcEEc-CeeecCCCC---CHHHH----HHHHHHHHhCCce
Q 033022           11 NVGVCLINSDSQIFVASRLNVP------GAWQM-PQGGIEDGE---DPKLA----AMRELREETGIVS   64 (129)
Q Consensus        11 ~~~~~i~~~~~~vLl~~r~~~~------g~w~~-PgG~ve~gE---s~~~a----a~RE~~EEtGl~~   64 (129)
                      .-.++|.+.+ +||+..|...+      |.+++ .|||+..++   |..+.    +.||+.||+++.-
T Consensus        63 IpYvvi~~ed-evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vse  129 (203)
T COG4112          63 IPYVVIMDED-EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSE  129 (203)
T ss_pred             ccEEEEecCC-EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCH
Confidence            3344555555 99999988422      46666 578887654   33332    7899999999983

>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]

Probab=95.05  E-value=0.023  Score=41.67  Aligned_cols=43  Identities=37%  Similarity=0.496  Sum_probs=38.2

Q ss_pred             cEEEEEEcC----CCCcE-EcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022           22 QIFVASRLN----VPGAW-QMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus        22 ~vLl~~r~~----~~g~w-~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      ++.+.||++    |||.| .+.+|++.-|-...++|+.|..||+.+..
T Consensus       149 ~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~  196 (306)
T KOG4313|consen  149 CIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPS  196 (306)
T ss_pred             EEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCch
Confidence            678888885    77888 56899999999999999999999999985

>PRK10880 adenine DNA glycosylase; Provisional

Probab=94.27  E-value=0.19  Score=38.88  Aligned_cols=46  Identities=20%  Similarity=0.294  Sum_probs=30.0

Q ss_pred             EEEEEEEeCCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCc
Q 033022           11 NVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIV   63 (129)
Q Consensus        11 ~~~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~   63 (129)
                      ...++++..++++||.+|..   ++|.|+||..  +..    + ..++..|+.|+.
T Consensus       232 ~~~~~~~~~~~~~~l~~r~~~gl~~gl~~fP~~--~~~----~-~~~~~~~~~~~~  280 (350)
T PRK10880        232 TGYFLLLQHGDEVWLEQRPPSGLWGGLFCFPQF--ADE----E-ELRQWLAQRGIA  280 (350)
T ss_pred             EEEEEEEEECCEEEEEECCccChhhccccCCCC--cch----h-hHHHHHHhcCCc
Confidence            34444555667999999975   4599999963  221    1 245566778875

>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

Probab=92.48  E-value=0.27  Score=36.22  Aligned_cols=42  Identities=17%  Similarity=0.288  Sum_probs=35.8

Q ss_pred             EEEEEEc-CCCCcEEcCeeec-CCCCCHHHHHHHHHHHHhCCce
Q 033022           23 IFVASRL-NVPGAWQMPQGGI-EDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus        23 vLl~~r~-~~~g~w~~PgG~v-e~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      +||++|. +..+.|.||-+.. ++++++..+|.|++++-.|=..
T Consensus       141 yLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~  184 (263)
T KOG4548|consen  141 YLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENK  184 (263)
T ss_pred             EEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcchh
Confidence            6777755 3447999999999 9999999999999999998764

>TIGR01084 mutY A/G-specific adenine glycosylase

Probab=91.60  E-value=0.46  Score=35.57  Aligned_cols=28  Identities=25%  Similarity=0.328  Sum_probs=20.8

Q ss_pred             EEEEEeCCCcEEEEEEcC---CCCcEEcCee
Q 033022           13 GVCLINSDSQIFVASRLN---VPGAWQMPQG   40 (129)
Q Consensus        13 ~~~i~~~~~~vLl~~r~~---~~g~w~~PgG   40 (129)
                      .+++.+.++++|+.+|..   ..|.|+||+.
T Consensus       231 ~~~~~~~~~~~~~~~r~~~~~~~gl~~~p~~  261 (275)
T TIGR01084       231 FLVLQNYDGEVLLEQRPEKGLWGGLYCFPQF  261 (275)
T ss_pred             EEEEEeCCCeEEEEeCCCCchhhccccCCCC
Confidence            334446678999999975   4589999973

This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=89.81  E-value=0.83  Score=34.69  Aligned_cols=31  Identities=26%  Similarity=0.230  Sum_probs=28.0

Q ss_pred             cEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022           34 AWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus        34 ~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      ..++..|.|+..-|..+-|.||..||.|++.
T Consensus       285 TlELcag~Vd~p~s~~e~a~~e~veecGYdl  315 (405)
T KOG4432|consen  285 TLELCAGRVDDPFSDPEKAARESVEECGYDL  315 (405)
T ss_pred             eeeeecccCCCCcccHHHHHHHHHHHhCCCC
Confidence            4577889999889999999999999999995

>PF14443 DBC1: DBC1

Probab=89.05  E-value=0.65  Score=30.69  Aligned_cols=43  Identities=21%  Similarity=0.298  Sum_probs=30.5

Q ss_pred             cEEEEEEcC----CCCcEEcC--eeecCC-CCCHHHHHHHHHHHHhCCce
Q 033022           22 QIFVASRLN----VPGAWQMP--QGGIED-GEDPKLAAMRELREETGIVS   64 (129)
Q Consensus        22 ~vLl~~r~~----~~g~w~~P--gG~ve~-gEs~~~aa~RE~~EEtGl~~   64 (129)
                      ++|+.++.+    -+|.|+.-  ||-.+. ..++..+|+|=+++-||++.
T Consensus         9 kFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDL   58 (126)
T PF14443_consen    9 KFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDL   58 (126)
T ss_pred             eeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccch
Confidence            456655554    24788554  555554 36789999999999999994

>PRK13910 DNA glycosylase MutY; Provisional

Probab=86.17  E-value=1.1  Score=33.85  Aligned_cols=21  Identities=19%  Similarity=0.286  Sum_probs=16.8

Q ss_pred             CCCcEEEEEEcC--CCCcEEcCe
Q 033022           19 SDSQIFVASRLN--VPGAWQMPQ   39 (129)
Q Consensus        19 ~~~~vLl~~r~~--~~g~w~~Pg   39 (129)
                      .++++||.||..  ++|.|+||.
T Consensus       195 ~~~~~ll~kr~~~l~~gl~~fP~  217 (289)
T PRK13910        195 QNNQIALEKIEQKLYLGMHHFPN  217 (289)
T ss_pred             ECCEEEEEECCCchhcccccCCC
Confidence            456999998853  568999996

>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []

Probab=80.54  E-value=1.9  Score=22.59  Aligned_cols=25  Identities=32%  Similarity=0.336  Sum_probs=12.1

Q ss_pred             EcCeeecCCCCCHHHHHHHHHHHHh
Q 033022           36 QMPQGGIEDGEDPKLAAMRELREET   60 (129)
Q Consensus        36 ~~PgG~ve~gEs~~~aa~RE~~EEt   60 (129)
                      .+-||-..||--+...+.||+-||+
T Consensus        12 tClggLasPgPvp~~~alkELIeEL   36 (43)
T PF03487_consen   12 TCLGGLASPGPVPSSTALKELIEEL   36 (43)
T ss_dssp             -----------S-HHHHHHHHHHHH
T ss_pred             HHhcccCCCCCCCchHHHHHHHHHH
Confidence            4457888899999999999999996

It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	129
1f3y_A	165	Solution Structure Of The Nudix Enzyme Diadenosine		1e-40
2kdv_A	164	Solution Structure Of Rna Pyrophosphohydrolase Rpph		5e-12
2kdw_A	164	Solution Structure Of Rpph Mutant E53a From Escheri		2e-11
1sjy_A	159	Crystal Structure Of Nudix Hydrolase Dr1025 From De		3e-06
3hhj_A	158	Crystal Structure Of Mutator Mutt From Bartonella H		1e-04
3r03_A	144	The Crystal Structure Of Nudix Hydrolase From Rhodo		2e-04
2fvv_A	194	Human Diphosphoinositol Polyphosphate Phosphohydrol		3e-04
3ees_A	153	Structure Of The Rna Pyrophosphohydrolase Bdrpph Le		3e-04
3i7u_A	134	Crystal Structure Of Ap4a Hydrolase (Aq_158) From A		5e-04

>pdb|1F3Y|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine Tetraphosphate Hydrolase From Lupinus Angustifolius L. Length = 165

Iteration: 1
 Score =  161 bits (407), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 71/103 (68%), Positives = 87/103 (84%)
Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           MD  P GYR NVG+CL+N+D +IF ASRL++P AWQMPQGGI++GEDP+ AA+RELREET
Sbjct: 6   MDSPPEGYRRNVGICLMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREET 65
Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
           G+ SAE+IAEVP WLTYDFPP V+ K+N  WG +W GQAQKW+
Sbjct: 66  GVTSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWF 108

>pdb|2KDV|A Chain A, Solution Structure Of Rna Pyrophosphohydrolase Rpph From Escherichia Coli Length = 164

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 52/102 (50%), Gaps = 12/102 (11%)
Query: 7   GYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
           GYRPNVG+ + N   Q+  A R     +WQ PQGGI  GE  + A  REL EE G+   +
Sbjct: 6   GYRPNVGIVICNRQGQVMWARRFG-QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKD 64
Query: 67  --IIAEVPNWLTYDFPPAV---KTKVNRLWGGEWHGQAQKWY 103
             I+A   NWL Y  P  +    TK   +      GQ QKW+
Sbjct: 65  VRILASTRNWLRYKLPKRLVRWDTKPVCI------GQKQKWF 100

>pdb|2KDW|A Chain A, Solution Structure Of Rpph Mutant E53a From Escherichia Coli Length = 164

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 7   GYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
           GYRPNVG+ + N   Q+  A R     +WQ PQGGI  GE  + A  R L EE G+   +
Sbjct: 6   GYRPNVGIVICNRQGQVMWARRFG-QHSWQFPQGGINPGESAEQAMYRALFEEVGLSRKD 64
Query: 67  --IIAEVPNWLTYDFPPAV---KTKVNRLWGGEWHGQAQKWY 103
             I+A   NWL Y  P  +    TK   +      GQ QKW+
Sbjct: 65  VRILASTRNWLRYKLPKRLVRWDTKPVCI------GQKQKWF 100

>pdb|1SJY|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 From Deinococcus Radiodurans Length = 159

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 13 GVCLINSDSQIFVASRLNVPGA------WQMPQGGIEDGEDPKLAAMRELREETGI 62
          GV L+N    I +     +PG       W +P G +EDGE+P+ AA+RE  EETG+
Sbjct: 17 GVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGL 72

>pdb|3HHJ|A Chain A, Crystal Structure Of Mutator Mutt From Bartonella Henselae Length = 158

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 12 VGVCLINSDSQIFVASR---LNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
          V   L++ D+++ +  R    ++ G W+ P G +E GE P+ + +REL EE G+
Sbjct: 32 VACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGV 85

>pdb|3R03|A Chain A, The Crystal Structure Of Nudix Hydrolase From Rhodospirillum Rubrum Length = 144

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 12 VGVCLINSDSQIFVASR---LNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
              LI+ D ++ +A R    ++ G W+ P G +E GE P+ A +REL EE G+
Sbjct: 11 TAAALIDPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGV 64

>pdb|2FVV|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1 Length = 194

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 7  GYRPNVGVCLINSDSQ--IFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
          GY+         S+S+  + + S    P  W +P GG+E  E+P +AA+RE+ EE G+
Sbjct: 38 GYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGV 95

>pdb|3EES|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph Length = 153

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 16 LINSDSQIFVASR---LNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
           +  D +I V  R    ++ G W+ P G IE+GE P+ A  REL EE GI
Sbjct: 28 FLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGI 77

>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex Aeolicus Vf5 Length = 134

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI--- 67
          + G  L      + + +  NV   W  P+G IE GE P+  A+RE+ EETG V  EI   
Sbjct: 6  SAGGVLFKDGEVLLIKTPSNV---WSFPKGNIEPGEKPEETAVREVWEETG-VKGEILDY 61
Query: 68 IAEVPNWLT 76
          I E+  W T
Sbjct: 62 IGEIHYWYT 70

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	129
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	1e-56
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	1e-48
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	3e-27
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	2e-20
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	4e-19
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	1e-14
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	5e-12
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	8e-12
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	1e-11
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	1e-11
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	2e-11
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	2e-11
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	2e-11
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	4e-11
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	4e-11
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	5e-11
3grn_A	153	MUTT related protein; structural genomics, hydrola	6e-11
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	7e-11
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	9e-11
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	1e-10
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	1e-10
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	2e-10
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	2e-10
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	2e-10
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	3e-10
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	4e-10
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	4e-10
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	5e-10
3f13_A	163	Putative nudix hydrolase family member; structural	6e-10
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	7e-10
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	7e-10
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	9e-10
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	1e-09
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	2e-09
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	3e-09
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	4e-09
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	4e-09
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	1e-08
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	1e-08
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	1e-08
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	2e-08
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	2e-08
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	2e-08
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	3e-08
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	1e-07
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	1e-07
3exq_A	161	Nudix family hydrolase; protein structure initiati	1e-07
2b06_A	155	MUTT/nudix family protein; structural genomics, P	1e-07
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	2e-07
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	2e-07
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	4e-07
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	2e-06
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	2e-06
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	3e-06
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	3e-06
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	6e-06
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	3e-05
2fb1_A	226	Conserved hypothetical protein; structural genomic	8e-05
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	1e-04
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	2e-04
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	3e-04

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A* Length = 165

 Score =  172 bits (439), Expect = 1e-56
 Identities = 71/104 (68%), Positives = 87/104 (83%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           MD  P GYR NVG+CL+N+D +IF ASRL++P AWQMPQGGI++GEDP+ AA+RELREET
Sbjct: 6   MDSPPEGYRRNVGICLMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREET 65

Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYA 104
           G+ SAE+IAEVP WLTYDFPP V+ K+N  WG +W GQAQKW+ 
Sbjct: 66  GVTSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFL 109

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A Length = 164

 Score =  152 bits (386), Expect = 1e-48
 Identities = 40/106 (37%), Positives = 50/106 (47%), Gaps = 8/106 (7%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           +D     YRPNVG+ + N   Q+  A R     +WQ PQGGI  GE  + A  REL EE 
Sbjct: 2   IDDDG--YRPNVGIVICNRQGQVMWARRFG-QHSWQFPQGGINPGESAEQAMYRELFEEV 58

Query: 61  GIV--SAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYA 104
           G+      I+A   NWL Y  P  +   V         GQ QKW+ 
Sbjct: 59  GLSRKDVRILASTRNWLRYKLPKRL---VRWDTKPVCIGQKQKWFL 101

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A Length = 150

 Score = 97.6 bits (243), Expect = 3e-27
 Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 12/110 (10%)

Query: 1   MDGLPSGYRPNVGVCLI---NSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELR 57
           M      Y+  V + ++       ++ +  R + P  WQ   G +E+GE    AAMRE++
Sbjct: 1   MKDKV--YKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVK 58

Query: 58  EETGIVSAEI---IAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYA 104
           EE  I        + +    + ++    ++   +R   G      + W+ 
Sbjct: 59  EEVTIDVVAEQLTLIDCQRTVEFEIFSHLR---HRYAPG-VTRNTESWFC 104

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score = 79.8 bits (197), Expect = 2e-20
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 8  YRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA-- 65
          +R  +   + N+  +  +    +    W  P+G +E GED    A+R  +EE GI +   
Sbjct: 16 FRRCLIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQL 75

Query: 66 EIIAEVPNWLTYDFPPAVKT 85
           II      L Y      KT
Sbjct: 76 TIIEGFKRELNYVARNKPKT 95

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138

 Score = 76.1 bits (188), Expect = 4e-19
 Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 2/81 (2%)

Query: 13 GVCLINSDSQIFVA--SRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAE 70
           V       +I          P  W  P+G ++ GED   AA+RE +EE  I   ++   
Sbjct: 8  LVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIH 67

Query: 71 VPNWLTYDFPPAVKTKVNRLW 91
               T  +    K K  + W
Sbjct: 68 EDCHETLFYEAKGKPKSVKYW 88

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Length = 149

 Score = 65.0 bits (158), Expect = 1e-14
 Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 9/93 (9%)

Query: 12  VGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEV 71
           +      ++ Q  V  R +    WQ   GG ED E     A RE  EE  +     +  +
Sbjct: 11  IPFIKTEANYQFGVLHRTD-ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSL 69

Query: 72  PNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYA 104
            +      P             + +   +  +A
Sbjct: 70  DSH--ASIPNF------HFSFNKPYVVPEYCFA 94

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199

 Score = 59.2 bits (143), Expect = 5e-12
 Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 5/82 (6%)

Query: 4   LPSGYRPNVGVC---LINSDSQIFVA-SRLNVPGAWQMPQGGIEDGEDPKLAAMRELREE 59
                   VGV       S  +I V   R  +   W+ P G  E  ED    A+RE+ EE
Sbjct: 19  YFQSMSHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEE 78

Query: 60  TGI-VSAEIIAEVPNWLTYDFP 80
           TGI      +  +    T    
Sbjct: 79  TGIKSEFRSVLSIRQQHTNPGA 100

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148

 Score = 57.5 bits (139), Expect = 8e-12
 Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 16/128 (12%)

Query: 9   RPNV-GVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 67
           R     +     ++ + +    N  GA+ +P G IE  E  + A  RE+ EE GI S EI
Sbjct: 18  RYAAYIIVSKPENNTMVLVQAPN--GAYFLPGGEIEGTETKEEAIHREVLEELGI-SVEI 74

Query: 68  IAEVPNWLTYDFPPAVKTKVN--------RLWGGE----WHGQAQKWYASLLLLVPLTLS 115
              +     Y +    +T             W              W A    +  L   
Sbjct: 75  GCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVRLLKRG 134

Query: 116 THTHFMKE 123
           +H   +++
Sbjct: 135 SHRWAVEK 142

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153

 Score = 57.1 bits (138), Expect = 1e-11
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 8  YRPNVGV-CLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREETGIV 63
          ++P+V V C+++++ +  V          W  P G +E  E    AA REL EETGI 
Sbjct: 2  FKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGIS 59

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271

 Score = 58.9 bits (142), Expect = 1e-11
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 8   YRPNVGVC---LINSDS-QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV 63
           Y+  + V    +++    Q  +         W  P+G I+  E     A+RE+ EETG  
Sbjct: 97  YKTRIPVRGAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFD 156

Query: 64  SAEIIAE 70
            +  I  
Sbjct: 157 CSSRINP 163

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Length = 194

 Score = 57.7 bits (139), Expect = 2e-11
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 5  PSGYRPNVG-VCL-INSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
            GY+     +C    S+ ++ + S    P  W +P GG+E  E+P +AA+RE+ EE G+
Sbjct: 36 GDGYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGV 95

Query: 63 V 63
           
Sbjct: 96 K 96

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Length = 160

 Score = 56.9 bits (137), Expect = 2e-11
 Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 2/74 (2%)

Query: 9  RPNVGVCLINSDSQIFVASRLNVPGA--WQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
            ++   + NS  +  +  R N P    W +P G ++  E  + A  R    E G+    
Sbjct: 18 LVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPI 77

Query: 67 IIAEVPNWLTYDFP 80
             +      + + 
Sbjct: 78 TAGQFYGVWQHFYD 91

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165

 Score = 56.8 bits (137), Expect = 2e-11
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 9  RPNVGVCLINSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
          +  +   LI +D    +    +     PG W +  GG+E GE  + A  RE+REE G 
Sbjct: 27 QRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGE 84

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Length = 171

 Score = 56.3 bits (136), Expect = 4e-11
 Identities = 15/53 (28%), Positives = 28/53 (52%)

Query: 10 PNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
                ++  D ++ +  +      W +P G +E+GE  + A +RE+REETG+
Sbjct: 23 QVRVTGILIEDEKVLLVKQKVANRDWSLPGGRVENGETLEEAMIREMREETGL 75

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae} Length = 158

 Score = 55.8 bits (135), Expect = 4e-11
 Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 15/104 (14%)

Query: 11  NVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 67
            V   L++ D+++ +  R     + G W+ P G +E GE P+ + +REL EE G+     
Sbjct: 31  VVACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQAD 90

Query: 68  IAEVPNWLTYDFPPAVKTKVN------RLWGGEWH---GQAQKW 102
                 + ++ +       +         + G      GQ  KW
Sbjct: 91  NLFPLTFASHGYE---TFHLLMPLYFCSHYKGVAQGREGQNLKW 131

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146

 Score = 55.6 bits (134), Expect = 5e-11
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 2/92 (2%)

Query: 10  PNVGVCLINSD-SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII 68
           P  G  + N + S+I +        +W  P+G I   E+     +RE++EE G    + I
Sbjct: 5   PVRGAAIFNENLSKILLVQGTE-SDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYI 63

Query: 69  AEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQ 100
            +             K  +       ++ + Q
Sbjct: 64  DDNQFIERNIQGKNYKIFLISGVSEVFNFKPQ 95

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153

 Score = 55.4 bits (134), Expect = 6e-11
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 8  YRPNVGVCLINSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGI- 62
          Y  +V   + N   +  +  R        G W +P G +   E  K    RE+ EETGI 
Sbjct: 7  YIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGIT 66

Query: 63 VSAEIIAEVPNWLTYDF 79
          +    IA   N+   + 
Sbjct: 67 MVPGDIAGQVNFELTEK 83

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} Length = 144

 Score = 54.6 bits (132), Expect = 9e-11
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 15/103 (14%)

Query: 12  VGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII 68
               LI+ D ++ +A R     + G W+ P G +E GE P+ A +REL EE G+ +    
Sbjct: 11  TAAALIDPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASC 70

Query: 69  AEVPNWLTYDFPPAVKTKVN------RLWGGEWH---GQAQKW 102
                + ++ +       +       R W G      GQ   W
Sbjct: 71  LAPLAFASHSYDTF---HLLMPLYACRSWRGRATAREGQTLAW 110

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156

 Score = 54.5 bits (131), Expect = 1e-10
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 12 VGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEV 71
          V   ++  + ++ +     + G +  P G +E  E P  A  RE  EETGI   E I   
Sbjct: 3  VTSGVLVENGKVLLVKHKRL-GVYIYPGGHVEHNETPIEAVKREFEEETGI-VVEPIGFT 60

Query: 72 PNWLTYD 78
             +  +
Sbjct: 61 YGIIDEN 67

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} Length = 140

 Score = 54.1 bits (131), Expect = 1e-10
 Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 19/106 (17%)

Query: 11  NVGVCLINSDSQIFVASRLN-----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65
            V   +I    +     R           ++ P G +E+GE  + A  RE+ EE   V  
Sbjct: 7   EVVAAVIRLGEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYV-I 65

Query: 66  EIIAEVPNWLTYDFPPAVKTKVN------RLWGGEWH---GQAQKW 102
           E+  ++     + +P     ++          G  +      A +W
Sbjct: 66  EVGEKLLTV-HHTYP---DFEITMHAFLCHPVGQRYVLKEHIAAQW 107

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157

 Score = 54.3 bits (131), Expect = 2e-10
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 9  RPNVGV-CLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIV 63
          +P VG    I  D +I +  R   P  G W +P G ++  E  + A  RE+ EE GI 
Sbjct: 27 QPRVGCGAAIVRDGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIA 84

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126

 Score = 53.4 bits (129), Expect = 2e-10
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 12  VGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEV 71
            G  + N+  ++ +       G W  P+G  E GE  + AA+RE+ EETG+  AE++  +
Sbjct: 5   AGGVVFNAKREVLLLRDRM--GFWVFPKGHPEPGESLEEAAVREVWEETGV-RAEVLLPL 61

Query: 72  PNWLTYDFPPAVKTKVNRLWGGEWHGQAQK 101
             + T    P    +    +     G  + 
Sbjct: 62  --YPTRYVNPKGVEREVHWFLMRGEGAPRL 89

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli} Length = 140

 Score = 53.8 bits (130), Expect = 2e-10
 Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 21/106 (19%)

Query: 11  NVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIV--SA 65
            V   +I  D +I +A R       G W+   G +E  E  + A +RELREE GI     
Sbjct: 10  EVVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVG 69

Query: 66  EIIAEVPNWLTYDFPPAVKTKVN------RLWGGEWH---GQAQKW 102
           E +A        +        ++        + G       QA  W
Sbjct: 70  EYVASH----QREVS---GRIIHLHAWHVPDFHGTLQAHEHQALVW 108

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159

 Score = 53.6 bits (129), Expect = 3e-10
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 6/57 (10%)

Query: 12 VGVCLINSDSQIFVASRLNVP------GAWQMPQGGIEDGEDPKLAAMRELREETGI 62
           GV L+N    I +     +P      G W +P G +EDGE+P+ AA+RE  EETG+
Sbjct: 16 AGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGL 72

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A* Length = 153

 Score = 53.4 bits (129), Expect = 4e-10
 Identities = 28/106 (26%), Positives = 39/106 (36%), Gaps = 21/106 (19%)

Query: 11  NVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIV--SA 65
            V    +  D +I V  R     + G W+ P G IE+GE P+ A  REL EE GI     
Sbjct: 23  PVVAGFLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVG 82

Query: 66  EIIAEVPNWLTYDFPPAVKTKVN------RLWGGEWH---GQAQKW 102
           E+        T+ +       +         W GE         +W
Sbjct: 83  ELKLAC----THSYG---DVGILILFYEILYWKGEPRAKHHMMLEW 121

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} Length = 154

 Score = 53.2 bits (128), Expect = 4e-10
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 7  GYRPNVGVC-LINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV-- 63
               V    LI  + ++ V       G +    G I+  E  + A +RE++EE G+   
Sbjct: 15 NTVFGVRATALIVQNHKLLVTKD---KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQ 71

Query: 64 SAEIIAEVPNWLTYD 78
          + ++   V N    D
Sbjct: 72 AGQLAFVVENRFEVD 86

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156

 Score = 52.8 bits (127), Expect = 5e-10
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 5  PSGYRPNVGV----CLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELRE 58
          P   R NV        ++   ++ +         G+W +P G +E GE    A  RE++E
Sbjct: 12 PVRLRKNVCYVVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKE 71

Query: 59 ETGI 62
          E G+
Sbjct: 72 EAGL 75

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Length = 163

 Score = 53.0 bits (127), Expect = 6e-10
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 12 VGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
              +I     + V +     G + +P G    GE    A +RE+REETG+
Sbjct: 18 RATAIIEMPDGVLVTASRG--GRYNLPGGKANRGELRSQALIREIREETGL 66

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153

 Score = 52.5 bits (126), Expect = 7e-10
 Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 8  YRPNVGV-CLINSDSQIFVASRLNVPGA--WQMPQGGIEDGEDPKLAAMRELREETGI-V 63
          ++PNV V  +I  D +  +   +    A     P G +E GE    A  RE+ EETG   
Sbjct: 5  WKPNVTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSF 64

Query: 64 SAEIIAEVPNWLTYDF 79
            E++  + +W     
Sbjct: 65 LPEVLTGIYHWTCASN 80

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A Length = 205

 Score = 53.6 bits (129), Expect = 7e-10
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 7   GYR-PNVGV-CLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
           GY+ P V +  ++  + ++         G W +P G  + G  P   A +E+ EETG 
Sbjct: 63  GYQTPKVDIRAVVFQNEKLLFVKE-KSDGKWALPGGWADVGYTPTEVAAKEVFEETGY 119

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A* Length = 129

 Score = 51.4 bits (124), Expect = 1e-09
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 4/56 (7%)

Query: 11 NVGVCLI-NSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
           + V +I N +++IF+  R     +    + P G IE GE P+ A +REL+EE GI
Sbjct: 5  QIAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGI 60

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A Length = 176

 Score = 52.0 bits (125), Expect = 2e-09
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 14 VCLINSDSQIFVASRLNVPGA--WQMPQGGIEDGEDPKLAAMRELREETGI 62
          + L+    ++ +  +    GA  W    G +++GE  +  A REL+EE+G+
Sbjct: 29 LVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGL 79

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718} Length = 189

 Score = 51.7 bits (124), Expect = 3e-09
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 9  RPNVGV-CLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGI 62
           P V V C+   ++++ +  R   P  G W +P G +E+ E     A RE  EE   
Sbjct: 38 NPKVIVGCIPEWENKVLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANA 94

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A Length = 170

 Score = 50.7 bits (122), Expect = 4e-09
 Identities = 16/27 (59%), Positives = 19/27 (70%)

Query: 35 WQMPQGGIEDGEDPKLAAMRELREETG 61
           ++P G IE GEDP  AA REL E+TG
Sbjct: 62 LEIPAGLIEPGEDPLEAARRELAEQTG 88

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans} Length = 145

 Score = 50.2 bits (121), Expect = 4e-09
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 35 WQMPQGGIEDGEDPKLAAMRELREETGIVSAEII 68
           ++  GG+E GED   AA REL EE G  ++E +
Sbjct: 34 TEIVAGGVEKGEDLGAAAARELLEEVGGAASEWV 67

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} Length = 139

 Score = 49.2 bits (118), Expect = 1e-08
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 9  RPNVGV-CLI-----NSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
           P +    +I      +   I +  R   P    +P G +E GE  + AA RE+REETG+
Sbjct: 7  TPLLATDVIIRLWDGENFKGIVLIERKYPPVGLALPGGFVEVGERVEEAAAREMREETGL 66

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis} Length = 206

 Score = 50.2 bits (120), Expect = 1e-08
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 7   GY-RPNVGV-CLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
           GY  P +     I  + +I +    +  G W +P G  +  +  K   ++E++EE G+
Sbjct: 65  GYQTPKLDTRAAIFQEDKILLVQEND--GLWSLPGGWCDVDQSVKDNVVKEVKEEAGL 120

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188

 Score = 50.1 bits (120), Expect = 1e-08
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 7/89 (7%)

Query: 12 VGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI-VSAEIIAE 70
          V  C++    Q+ +  +    G W  P G +E GE       RE  EETGI V    +  
Sbjct: 6  VTNCIVVDHDQVLLLQK-PRRGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKG 64

Query: 71 VPNWLTYDFPPAVKTKVN-----RLWGGE 94
          + + + +D    V   +          GE
Sbjct: 65 IFSMVIFDEGKIVSEWMLFTFKATEHEGE 93

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 364

 Score = 50.6 bits (120), Expect = 2e-08
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 33  GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWG 92
             W  P+G +E  E  + AA+RE+ EETG    ++   +   + Y      K K      
Sbjct: 49  DDWSWPKGKLEQNETHRHAAVREIGEETGS-PVKLGPYLC-EVEYPLSEEGK-KTRHSHD 105

Query: 93  GEWHGQAQKWYA 104
                +   ++ 
Sbjct: 106 CTADTKHTLYWM 117

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Length = 352

 Score = 50.4 bits (120), Expect = 2e-08
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 5   PSGYRPNVGVCLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGI 62
           P          L+  +  I +  R   P    W +P G +E  E    A +REL EET I
Sbjct: 203 PFKPNFVTVDALVIVNDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNI 262

Query: 63  V--SAEIIAEVPNWLTYDFP 80
                ++         +D+P
Sbjct: 263 NLTHEQLAIAKRCEKVFDYP 282

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A* Length = 198

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 35  WQMPQGGIEDGEDPKLAAMRELREETG 61
               +G I+ GE    AA REL+EE G
Sbjct: 77  LGFSKGLIDPGESVYEAANRELKEEVG 103

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A* Length = 182

 Score = 48.4 bits (116), Expect = 3e-08
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 35  WQMPQGGIEDGEDPKLAAMRELREETGIVSAEII 68
            ++P G +++GE P+ AA RELREE G  +  +I
Sbjct: 70  LEVPAGKVDEGETPEAAARRELREEVGAEAETLI 103

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} Length = 159

 Score = 46.9 bits (111), Expect = 1e-07
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 33 GAWQMPQGGIEDGEDPKLAAMRELREETGI-VSAEIIAEVPNWLTYDFP 80
                 G IE  E P+ A +RE +EE G+ V+     ++    + D  
Sbjct: 28 KKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKSCDLS 76

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A* Length = 212

 Score = 47.5 bits (113), Expect = 1e-07
 Identities = 16/27 (59%), Positives = 20/27 (74%)

Query: 35  WQMPQGGIEDGEDPKLAAMRELREETG 61
            + P G I+DGE P+ AA+REL EETG
Sbjct: 94  IEFPAGLIDDGETPEAAALRELEEETG 120

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161

 Score = 46.5 bits (111), Expect = 1e-07
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 12 VGVCLI--NSDSQIFVASRLNVPGA--WQMPQGGIEDGEDPKLAAMRELREETGI 62
          V + ++      ++ V  ++NVP       P G +E GE    AA+RE+ EETG+
Sbjct: 12 VTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGL 66

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Length = 155

 Score = 46.6 bits (111), Expect = 1e-07
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 12 VGVCLI--NSDSQIFVASR---LNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
            +CLI      ++ +  R    N    +  P G +E+ E    + +RE+ EETG+
Sbjct: 10 TNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGL 65

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A* Length = 207

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 35  WQMPQGGIE-DGEDPKLAAMRELREETGIVSAEI 67
           W++P G ++  GE P L A RELREE G+ ++  
Sbjct: 72  WELPAGLLDVAGEPPHLTAARELREEVGLQASTW 105

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} Length = 187

 Score = 46.3 bits (110), Expect = 2e-07
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 14 VCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
          + LI               G W +P G +++ E  + AA REL EET +
Sbjct: 48 ILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSL 96

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Length = 197

 Score = 45.8 bits (108), Expect = 4e-07
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 1/85 (1%)

Query: 12  VGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEV 71
                +N +   F+    N+  +W    G  ++ +D    A++EL+EETG+ +   + + 
Sbjct: 48  SSAFAVNKERNKFLMIHHNIYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDK 107

Query: 72  PNWLTYDFPPAVKTKVNRLWGGEWH 96
              L          K  +      H
Sbjct: 108 AFALDVLTVNGH-IKRGKYVSSHLH 131

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Length = 171

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 12 VGVCLINSDSQIFV----ASRLNVPGAWQMPQGG-IEDGEDPKLAAMRELREETGI 62
          V   L NS  Q+++     S+   P A  +  GG ++ GE  + A  RE REE  +
Sbjct: 37 VNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNV 92

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Length = 180

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 12  VGVCLINSDSQIFV----ASRLNVPGAWQMPQGG-IEDGEDPKLAAMRELREETGIVSAE 66
             + + +   +I V     ++  +PG      GG ++  E    +A RE  EE GI    
Sbjct: 40  TYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVP 99

Query: 67  I 67
            
Sbjct: 100 F 100

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Length = 273

 Score = 43.9 bits (103), Expect = 3e-06
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 9/63 (14%)

Query: 9  RPNVGV-CLI------NSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREE 59
          +P++ V  ++          ++ +  R   P   +W +P G +   E  + + +RE +EE
Sbjct: 37 KPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEE 96

Query: 60 TGI 62
          TG+
Sbjct: 97 TGV 99

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP} Length = 341

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 15  CLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIV--SAEIIAE 70
            ++     + +  R   P  G   +P G I+  E      +REL+EET +      +   
Sbjct: 208 AVVVQAGHVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGS 267

Query: 71  VPNWLTYDFP 80
           + +   +D P
Sbjct: 268 IVDSHVFDAP 277

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A Length = 209

 Score = 42.7 bits (101), Expect = 6e-06
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 32  PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII 68
           P   +M  G IE+GE  +  A RE  EE G++     
Sbjct: 89  PWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTK 125

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A* Length = 190

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 12 VGVCLINSDSQIFVASR----LNVPGAWQMPQGG-IEDGEDPKLAAMRELREETGI 62
              L N+  Q+ V  R       PG W     G  + GE  + A +R  R E G+
Sbjct: 35 FSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGV 90

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6 Length = 226

 Score = 39.6 bits (92), Expect = 8e-05
 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 1  MDGLPSGY-RPNVGV-----CLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAA 52
          M    S      +G+          +  + +  R   P  G W +  G ++  E    AA
Sbjct: 2  MKNYYSSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAA 61

Query: 53 MRELREETGI 62
           R L E TG+
Sbjct: 62 KRVLAELTGL 71

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} PDB: 3o52_A* 1viu_A 3o69_A 3o61_A Length = 191

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 41  GIEDGEDPKLAAMRELREETGIVSAEII 68
           G+ D ++P++   +E  EETG    E+ 
Sbjct: 86  GLLDNDEPEVCIRKEAIEETGYEVGEVR 113

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A* Length = 292

 Score = 38.7 bits (89), Expect = 2e-04
 Identities = 15/47 (31%), Positives = 20/47 (42%)

Query: 24  FVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAE 70
           FVA +    G W +P G ++ GE       RE  EE      +  AE
Sbjct: 141 FVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAE 187

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A Length = 194

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 32  PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA--EIIAEVPNWLT 76
            G    P G ++ GE P  AA+RE +EE  +  A   ++ E+ +  T
Sbjct: 63  KGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFT 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	129
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.9
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.89
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.87
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.84
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.84
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.83
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.83
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.83
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.83
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.83
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.83
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.83
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.83
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.82
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.82
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.82
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.82
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.81
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.81
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.81
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.81
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.81
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.81
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.81
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.8
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.8
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.79
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.79
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.79
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.79
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.79
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.79
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.79
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.79
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.78
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.78
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.78
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.78
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.77
3f13_A	163	Putative nudix hydrolase family member; structural	99.77
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.77
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.77
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.76
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.76
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.75
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.75
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.75
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.75
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.75
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.75
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.74
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.73
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.73
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.72
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.72
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.72
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.72
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.71
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.7
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.7
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.68
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.68
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.66
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.65
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.65
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.64
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.63
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.63
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.61
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.6
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.51
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.49
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.46
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.4
3bho_A	208	Cleavage and polyadenylation specificity factor su	99.34
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	99.33
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	99.21

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.90  E-value=2.2e-24  Score=145.85  Aligned_cols=80  Identities=73%  Similarity=1.321  Sum_probs=65.5

Q ss_pred             CCCCCCCCcCEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecC
Q 033022            1 MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFP   80 (129)
Q Consensus         1 m~~~~~~~~~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   80 (129)
                      |...+..+|.++++++++.++++||++|...+|.|++|||++++|||+++||+||++||||+.+..+......+..+.++
T Consensus         6 ~~~~~~~~~~~v~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   85 (165)
T 1f3y_A            6 MDSPPEGYRRNVGICLMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFP   85 (165)
T ss_dssp             CSSCCSSCCCEEEEEEECTTSCEEEEEETTEEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEEEECSSCCBCCCC
T ss_pred             ccCCccceeeeEEEEEECCCCcEEEEecCCCCCcEECCeeccCCCCCHHHHHHHHHHHhhCCChhhhhcccccceeeecC
Confidence            44556668999999999999999999998767999999999999999999999999999999975554443333344443

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.89  E-value=5.5e-23  Score=136.29  Aligned_cols=107  Identities=22%  Similarity=0.364  Sum_probs=69.5

Q ss_pred             cCEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceee--EEeecCceEEeecCCCeeEe
Q 033022            9 RPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE--IIAEVPNWLTYDFPPAVKTK   86 (129)
Q Consensus         9 ~~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~--~~~~~~~~~~~~~~~~~~~~   86 (129)
                      +.+|+++|++ +++|||++|.+  |.|.+|||++|+|||+.+||+||++||||+++..  .+....  ..+.........
T Consensus         4 ~~aag~vv~~-~~~vLL~~r~~--g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~~~--~~~~~~~~~~~~   78 (134)
T 3i7u_A            4 EFSAGGVLFK-DGEVLLIKTPS--NVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIH--YWYTLKGERIFK   78 (134)
T ss_dssp             EEEEEEEEEE-TTEEEEEECTT--SCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEE--EEEEETTEEEEE
T ss_pred             EEEEEEEEEE-CCEEEEEEeCC--CcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeeeeee--EEecCCCceEEE
Confidence            4466667765 47999999864  8999999999999999999999999999999632  222211  122222222222


Q ss_pred             EEEEeccee---------eeeeeeEEecccccCCCCccccccc
Q 033022           87 VNRLWGGEW---------HGQAQKWYASLLLLVPLTLSTHTHF  120 (129)
Q Consensus        87 ~~~~~~~~~---------~~~~~~W~~~~~~~~~~~~~~~~~~  120 (129)
                      ..++|....         +..+.+||+++.+...+.++.+...
T Consensus        79 ~~~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~~~l~~~~~r~i  121 (134)
T 3i7u_A           79 TVKYYLMKYKEGEPRPSWEVKDAKFFPIKEAKKLLKYKGDKEI  121 (134)
T ss_dssp             EEEEEEEEEEEECCCCCTTSSEEEEEEHHHHHHHBCSHHHHHH
T ss_pred             EEEEEEEEEcCCcCcCChhheEEEEEEHHHHhhhcCChHHHHH
Confidence            223332221         2357789998877666655544443

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.87  E-value=1.1e-22  Score=137.22  Aligned_cols=56  Identities=29%  Similarity=0.496  Sum_probs=49.3

Q ss_pred             CEEEEEEE---------eCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022           10 PNVGVCLI---------NSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus        10 ~~~~~~i~---------~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      ++++++++         |++.++||++|++.+|.|.+|||++|+|||+.+||+||++||||+.+.
T Consensus         4 ra~G~iifr~~~~~~~~n~~~e~LL~~r~~~~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~   68 (155)
T 3u53_A            4 RACGLIIFRRCLIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAG   68 (155)
T ss_dssp             CEEEEEEEEECCCSSSSSCSEEEEEEEESSSSCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGG
T ss_pred             eEeEEEEEccccccceeCCCcEEEEEEecCCCCCEECCeeeccCCCCHHHHHHHHHHHHHCCccc
Confidence            46788877         344689999999877899999999999999999999999999999963

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.84  E-value=4.6e-20  Score=125.82  Aligned_cols=79  Identities=44%  Similarity=0.807  Sum_probs=64.8

Q ss_pred             CCCCCCCCcCEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee--eEEeecCceEEee
Q 033022            1 MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA--EIIAEVPNWLTYD   78 (129)
Q Consensus         1 m~~~~~~~~~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~--~~~~~~~~~~~~~   78 (129)
                      |++- .++|.+|++++++.++++||++|.. +|.|.+|||++++|||+.+||+||++||||+.+.  .++.....++.|.
T Consensus         1 m~~~-~~~~~~v~~~i~~~~~~vLl~~r~~-~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~   78 (164)
T 2kdv_A            1 MIDD-DGYRPNVGIVICNRQGQVMWARRFG-QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYK   78 (164)
T ss_dssp             CCCS-SSEEEEEEEEEECTTSEEEEEEETT-CCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEECSSCEEEE
T ss_pred             CCCC-CCCCcEEEEEEEccCCEEEEEEEcC-CCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEEecceeEEe
Confidence            5543 3588899999999889999999986 7899999999999999999999999999999863  4455555555666


Q ss_pred             cCC
Q 033022           79 FPP   81 (129)
Q Consensus        79 ~~~   81 (129)
                      ++.
T Consensus        79 ~~~   81 (164)
T 2kdv_A           79 LPK   81 (164)
T ss_dssp             CCT
T ss_pred             cCc
Confidence            654

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.84  E-value=5.2e-21  Score=127.20  Aligned_cols=64  Identities=30%  Similarity=0.440  Sum_probs=54.4

Q ss_pred             CCCCCCCCcCEEEEEEEeCC-CcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022            1 MDGLPSGYRPNVGVCLINSD-SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus         1 m~~~~~~~~~~~~~~i~~~~-~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      |..|+-..+.++++++++.+ +++||++|...+|.|.+|||++++|||+.+||+||++||||+.+
T Consensus         1 m~~m~~~~~~~v~~~i~~~~~~~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~   65 (150)
T 2o1c_A            1 MKDKVYKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDV   65 (150)
T ss_dssp             -CCCCCBCSEEEEEEEEETTTCEEEEEECSSSTTCEESEEEECCTTCCHHHHHHHHHHHHHCCCH
T ss_pred             CCcccccCceEEEEEEEeCCCCEEEEEEecCCCCceECCccccCCCCCHHHHHHHHHHHHhCCCc
Confidence            66775234457777888875 89999999876799999999999999999999999999999996

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.83  E-value=3e-20  Score=123.09  Aligned_cols=109  Identities=22%  Similarity=0.315  Sum_probs=72.3

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeE--EeecCceEEeecCCC
Q 033022            8 YRPNVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI--IAEVPNWLTYDFPPA   82 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~--~~~~~~~~~~~~~~~   82 (129)
                      .+..+++++++.++++||++|..   ++|.|++|||++++||++.+||+||++||||+.+...  ...  ....+.++..
T Consensus         7 ~~~~~~~vi~~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~--~~~~~~~~~~   84 (144)
T 3r03_A            7 ILLVTAAALIDPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPL--AFASHSYDTF   84 (144)
T ss_dssp             EEEEEEEEEBCTTSCEEEEECCTTSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEE--EEEEEECSSS
T ss_pred             eeEEEEEEEEcCCCEEEEEEeCCCCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccceEEE--EeeeccCCCe
Confidence            45566677778889999999985   3589999999999999999999999999999986322  111  1234454443


Q ss_pred             eeEeEEEEecc----e---eeeeeeeEEecccccCCCCcccccc
Q 033022           83 VKTKVNRLWGG----E---WHGQAQKWYASLLLLVPLTLSTHTH  119 (129)
Q Consensus        83 ~~~~~~~~~~~----~---~~~~~~~W~~~~~~~~~~~~~~~~~  119 (129)
                      ... +..|...    .   .+..+.+|++++.+......+.+..
T Consensus        85 ~~~-~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~  127 (144)
T 3r03_A           85 HLL-MPLYACRSWRGRATAREGQTLAWVRAERLREYPMPPADLP  127 (144)
T ss_dssp             EEE-EEEEEECCCBSCCCCCSSCEEEEECGGGGGGSCCCTTTTT
T ss_pred             EEE-EEEEEEEecCCccCCCCcceEEEEeHHHhccCCCCcchHH
Confidence            322 1122111    1   1235678999887765433333333

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.83  E-value=3.7e-20  Score=124.29  Aligned_cols=105  Identities=18%  Similarity=0.245  Sum_probs=71.9

Q ss_pred             CCCCcCEEEEEEEeCCCcEEEEEEcC----CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecC
Q 033022            5 PSGYRPNVGVCLINSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFP   80 (129)
Q Consensus         5 ~~~~~~~~~~~i~~~~~~vLl~~r~~----~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~   80 (129)
                      +..++.+|+++|++.++++||++|..    .+|.|++|||++++|||+.+||+||++||||+.+... ..+ ....+.++
T Consensus         4 ~~~~~~~v~~vi~~~~~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~-~~~-~~~~~~~~   81 (153)
T 3grn_A            4 EKPYIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPG-DIA-GQVNFELT   81 (153)
T ss_dssp             SSCEEEEEEEEEECTTCCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCC-SEE-EEEEEECS
T ss_pred             CCceEEEEEEEEEcCCCcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecc-eEE-EEEEEecC
Confidence            33477788888999889999999985    3589999999999999999999999999999986321 111 12234454


Q ss_pred             CCeeEeEEEE---ecce----eeeeeeeEEecccccCC
Q 033022           81 PAVKTKVNRL---WGGE----WHGQAQKWYASLLLLVP  111 (129)
Q Consensus        81 ~~~~~~~~~~---~~~~----~~~~~~~W~~~~~~~~~  111 (129)
                      ........+.   ..+.    .+..+.+|++++.+...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~  119 (153)
T 3grn_A           82 EKKVIAIVFDGGYVVADVKLSYEHIEYSWVSLEKILGM  119 (153)
T ss_dssp             SCEEEEEEEEEEECCCCCCCCTTEEEEEEECHHHHTTC
T ss_pred             CceEEEEEEEEEecCCcEecCCCcceEEEEEHHHhhhc
Confidence            4332211111   1111    12457789998766543

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.83  E-value=2.8e-20  Score=125.15  Aligned_cols=105  Identities=22%  Similarity=0.335  Sum_probs=70.9

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeE
Q 033022            8 YRPNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT   85 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   85 (129)
                      ....+++++++.++++||++|.+.  +|.|++|||++++|||+.+||+||++||||+++... ..+   ..+........
T Consensus        19 ~~~~v~~~i~~~~~~vLl~~r~~~~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~-~~~---~~~~~~~~~~~   94 (156)
T 3gg6_A           19 VCYVVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPE-TLL---SVEERGPSWVR   94 (156)
T ss_dssp             CEEEEEEECBCTTSEEEEEECCCTTSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEE-EEE---EEEESSTTEEE
T ss_pred             eEEEEEEEEEeCCCEEEEEEecCCCCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEee-eEE---EEEcCCCCEEE
Confidence            444566777888899999999863  589999999999999999999999999999996322 111   11222222211


Q ss_pred             --eEEEEeccee--------eeeeeeEEecccccCCCCccc
Q 033022           86 --KVNRLWGGEW--------HGQAQKWYASLLLLVPLTLST  116 (129)
Q Consensus        86 --~~~~~~~~~~--------~~~~~~W~~~~~~~~~~~~~~  116 (129)
                        +.+....+..        +..+.+|++++.+...+....
T Consensus        95 ~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~  135 (156)
T 3gg6_A           95 FVFLARPTGGILKTSKEADAESLQAAWYPRTSLPTPLRAHD  135 (156)
T ss_dssp             EEEEEEEEEECCCCGGGCSSSCSEEEEEETTSCCSSBSCTH
T ss_pred             EEEEEEeeCCeeccCCCCCcceeeeEEEcHHHCcccccchh
Confidence              1222211111        234779999998887665444

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.83  E-value=4.6e-20  Score=122.13  Aligned_cols=106  Identities=16%  Similarity=0.161  Sum_probs=66.4

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcC-----CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCC
Q 033022            8 YRPNVGVCLINSDSQIFVASRLN-----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPA   82 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~-----~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~   82 (129)
                      ....+++++.+ ++++||++|..     .+|.|++|||++++|||+.+||+||++||||+.+... ..+ ....+.++..
T Consensus         5 ~~~~v~~vi~~-~~~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~-~~~-~~~~~~~~~~   81 (140)
T 3gwy_A            5 SIEVVAAVIRL-GEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVG-EKL-LTVHHTYPDF   81 (140)
T ss_dssp             CEEEEEEEEEE-TTEEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEE-EEE-EEEECCCSSC
T ss_pred             EEEEEEEEEEe-CCEEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEec-eEE-EEEEEEeCCc
Confidence            44456666666 78999999985     4689999999999999999999999999999996332 111 1223444433


Q ss_pred             eeEeEEEEecce-----e---eeeeeeEEecccccCCCCccccc
Q 033022           83 VKTKVNRLWGGE-----W---HGQAQKWYASLLLLVPLTLSTHT  118 (129)
Q Consensus        83 ~~~~~~~~~~~~-----~---~~~~~~W~~~~~~~~~~~~~~~~  118 (129)
                      ...  ..+|...     .   +..+.+|++++.+......+.+.
T Consensus        82 ~~~--~~~f~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~  123 (140)
T 3gwy_A           82 EIT--MHAFLCHPVGQRYVLKEHIAAQWLSTREMAILDWAEADK  123 (140)
T ss_dssp             CEE--EEEEEEEECCSCCCCCSSCEEEEECHHHHTTSCBCGGGH
T ss_pred             eEE--EEEEEEEecCCcccccccceeEeccHHHHhhCCCCcccH
Confidence            221  1222211     1   23567899987765543333333

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.83  E-value=6e-20  Score=126.54  Aligned_cols=108  Identities=16%  Similarity=0.253  Sum_probs=71.5

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcC--CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeE
Q 033022            8 YRPNVGVCLINSDSQIFVASRLN--VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT   85 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~--~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   85 (129)
                      .+..+++++++.++++||++|.+  .+|.|.+|||++++|||+.+||+||++||||+.+..+. .+ ....+.++.....
T Consensus        23 ~~~~~~~~vi~~~~~vLL~~r~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~l-~~~~~~~~~~~~~  100 (176)
T 3q93_A           23 ASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALH-KV-GQIVFEFVGEPEL  100 (176)
T ss_dssp             CEEEEEEEEEECSSEEEEEEECSSTTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCE-EE-EEEEEEETTCSCE
T ss_pred             CCcEEEEEEEEeCCEEEEEEEcCCCCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeE-EE-EEEEEEcCCCCcE
Confidence            55667777778889999999875  35899999999999999999999999999999963221 11 1223444432222


Q ss_pred             e-EEEEeccee-------eeeeeeEEecccccCCCCcccc
Q 033022           86 K-VNRLWGGEW-------HGQAQKWYASLLLLVPLTLSTH  117 (129)
Q Consensus        86 ~-~~~~~~~~~-------~~~~~~W~~~~~~~~~~~~~~~  117 (129)
                      . ...|.....       +..+.+|++++.+......+.+
T Consensus       101 ~~~~~f~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~  140 (176)
T 3q93_A          101 MDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDMWPDD  140 (176)
T ss_dssp             EEEEEEEESCEESCCCCCSSEEEEEEETTCCCGGGBCTTH
T ss_pred             EEEEEEEEECCCCCcCCCcceeeEEeeHHHccccccCcch
Confidence            2 222222111       1356689999877644333333

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.83  E-value=1e-20  Score=124.59  Aligned_cols=56  Identities=27%  Similarity=0.487  Sum_probs=48.4

Q ss_pred             cCEEEEEEEeC---CCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022            9 RPNVGVCLINS---DSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus         9 ~~~~~~~i~~~---~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      +.++++++++.   ++++||++|+..+|.|.+|||++++|||+.+||+||++||||+.+
T Consensus         3 ~~~~~~vi~~~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~   61 (138)
T 1ktg_A            3 VKAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITK   61 (138)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEESSTTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCG
T ss_pred             eEEEEEEEEEecCCCcEEEEEEccCCCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCc
Confidence            45677777765   368999999865679999999999999999999999999999963

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.83  E-value=3.1e-19  Score=120.55  Aligned_cols=102  Identities=24%  Similarity=0.302  Sum_probs=68.6

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcC--CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeE
Q 033022            8 YRPNVGVCLINSDSQIFVASRLN--VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT   85 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~--~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   85 (129)
                      .+.+|+++|++ +++|||++|.+  .+|.|.+|||++++|||+.+||+||++||||+.+... ..+ ....+.+......
T Consensus        28 ~~~~v~~vi~~-~~~vLL~~r~~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~-~~~-~~~~~~~~~~~~~  104 (157)
T 4dyw_A           28 PRVGCGAAIVR-DGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERA-TLL-CVVDHIDAANGEH  104 (157)
T ss_dssp             CEEEEEEEEEE-TTEEEEEEECSSSSTTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESC-EEE-EEEEEEETTTTEE
T ss_pred             ceeEEEEEEEE-CCEEEEEEecCCCCCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccC-cEE-EEEEeeccCCCcE
Confidence            55667777777 68999999986  3589999999999999999999999999999996322 111 1123333322222


Q ss_pred             eEEEEecce-----e------eeeeeeEEecccccCCC
Q 033022           86 KVNRLWGGE-----W------HGQAQKWYASLLLLVPL  112 (129)
Q Consensus        86 ~~~~~~~~~-----~------~~~~~~W~~~~~~~~~~  112 (129)
                      ....+|...     .      +..+.+|++++.+...+
T Consensus       105 ~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~l  142 (157)
T 4dyw_A          105 WVAPVYLAHAFSGEPRVVEPDRHEALGWFALDDLPQPL  142 (157)
T ss_dssp             EEEEEEEESEEESCCCCSCTTTEEEEEEEETTSCCSSB
T ss_pred             EEEEEEEEEEcCCCcccCCCCcEeEEEEECHHHccccc
Confidence            222222211     1      13577999998887643

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.82  E-value=2.1e-19  Score=121.39  Aligned_cols=56  Identities=23%  Similarity=0.287  Sum_probs=49.8

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022            8 YRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      .+.+++++|++ +++|||++|.+ +|.|.+|||++++|||+.+||+||++||||+++.
T Consensus         5 ~~~~v~~vi~~-~~~vLL~~r~~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~   60 (159)
T 3f6a_A            5 RHFTVSVFIVC-KDKVLLHLHKK-AKKMLPLGGHIEVNELPEEACIREAKEEAGLNVT   60 (159)
T ss_dssp             SCEEEEEEEEE-TTEEEEEECSS-SCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCE
T ss_pred             ceEEEEEEEEE-CCEEEEEEcCC-CCeEECCccCccCCCCHHHHHHHHHHHHhCCCce
Confidence            56677777777 67999999986 7899999999999999999999999999999863

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.82  E-value=1.2e-19  Score=122.39  Aligned_cols=54  Identities=30%  Similarity=0.475  Sum_probs=47.9

Q ss_pred             CEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022           10 PNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus        10 ~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      ..++++|++ ++++||++|.+ +|.|.+|||++|+|||+.+||+||++||||+++.
T Consensus         2 ~~~~~vi~~-~~~vLL~~r~~-~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~   55 (156)
T 1k2e_A            2 IVTSGVLVE-NGKVLLVKHKR-LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVE   55 (156)
T ss_dssp             EEEEEECEE-TTEEEEEECTT-TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEE
T ss_pred             eEEEEEEEE-CCEEEEEEEcC-CCcEECCeeecCCCCCHHHHHHHHHHHHHCCcce
Confidence            356677777 78999999876 6899999999999999999999999999999863

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.82  E-value=3.4e-19  Score=117.69  Aligned_cols=58  Identities=31%  Similarity=0.338  Sum_probs=50.3

Q ss_pred             CcCEEEEEEEe--CCCc--EEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022            8 YRPNVGVCLIN--SDSQ--IFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         8 ~~~~~~~~i~~--~~~~--vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      .+.+++++|++  .+++  +||++|.+.++.|++|||++++|||+.+||+||++||||+.+.
T Consensus         8 p~~~v~~vi~~~~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~   69 (139)
T 2yyh_A            8 PLLATDVIIRLWDGENFKGIVLIERKYPPVGLALPGGFVEVGERVEEAAAREMREETGLEVR   69 (139)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEECSSSCSEECCEEECCTTCCHHHHHHHHHHHHHCCCCE
T ss_pred             CeEEEEEEEEEEcCCCcEEEEEEEecCCCCcEECccccCCCCCCHHHHHHHHHHHHHCCCcc
Confidence            45677777776  6677  9999998766679999999999999999999999999999963

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.82  E-value=1.7e-19  Score=123.06  Aligned_cols=56  Identities=32%  Similarity=0.572  Sum_probs=49.3

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022            8 YRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      ++..|++++++ ++++||++|...+|.|.+|||++++|||+.+||+||++||||+++
T Consensus        22 ~~~~v~~ii~~-~~~vLL~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~   77 (171)
T 3id9_A           22 MQVRVTGILIE-DEKVLLVKQKVANRDWSLPGGRVENGETLEEAMIREMREETGLEV   77 (171)
T ss_dssp             CEEEEEEEEEE-TTEEEEEECSSTTCCEECCEEECCTTCCHHHHHHHHHHHHHCCCE
T ss_pred             eEEEEEEEEEE-CCEEEEEEEECCCCeEECCCccCCCCCCHHHHHHHHHHHHHCCcc
Confidence            45566666666 579999999876799999999999999999999999999999996

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.81  E-value=7e-20  Score=124.26  Aligned_cols=102  Identities=20%  Similarity=0.245  Sum_probs=67.1

Q ss_pred             CcCEEEEEEEeCC-CcEEEEEEcC--CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCee
Q 033022            8 YRPNVGVCLINSD-SQIFVASRLN--VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVK   84 (129)
Q Consensus         8 ~~~~~~~~i~~~~-~~vLl~~r~~--~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   84 (129)
                      .+.++.++|++.+ ++|||++|.+  +.|.|++|||++++|||+.+||+||++||||+.+.... .. ....+.++....
T Consensus         9 ~~~~v~~vi~~~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~-~~-~~~~~~~~~~~~   86 (161)
T 3exq_A            9 VELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVT-FC-GTCEWFDDDRQH   86 (161)
T ss_dssp             EEEEEEEEEBCTTTCCEEEECCCCCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCE-EE-EEEEEECSSCSS
T ss_pred             ceEEEEEEEEeCCCCEEEEEEccCCCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCc-EE-EEEecccCCCCe
Confidence            4556666666766 6999999885  34789999999999999999999999999999963221 11 122334422222


Q ss_pred             EeEEEEecce-e-------eeeeeeEEecccccCC
Q 033022           85 TKVNRLWGGE-W-------HGQAQKWYASLLLLVP  111 (129)
Q Consensus        85 ~~~~~~~~~~-~-------~~~~~~W~~~~~~~~~  111 (129)
                      .....++... .       +..+.+|++++.+...
T Consensus        87 ~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~  121 (161)
T 3exq_A           87 RKLGLLYRASNFTGTLKASAEGQLSWLPITALTRE  121 (161)
T ss_dssp             EEEEEEEEECCEESCCCGGGTTTEEEECGGGCCTT
T ss_pred             EEEEEEEEEeccCCccCCCccceEEEeeHHHhhhC
Confidence            2222222221 1       1356789998877653

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.81  E-value=3.5e-19  Score=119.72  Aligned_cols=58  Identities=38%  Similarity=0.662  Sum_probs=52.0

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcC------CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022            8 YRPNVGVCLINSDSQIFVASRLN------VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~------~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      .+.++++++++.++++||++|.+      .+|.|++|||++++|||+.+||+||++||||+.+.
T Consensus        12 ~~~~~~~vi~~~~~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~   75 (159)
T 1sjy_A           12 ELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVR   75 (159)
T ss_dssp             CEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEE
T ss_pred             EEEeEEEEEEeCCCCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccce
Confidence            56677778888889999999985      56899999999999999999999999999999964

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.81  E-value=6.9e-20  Score=118.83  Aligned_cols=54  Identities=31%  Similarity=0.528  Sum_probs=49.6

Q ss_pred             CEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022           10 PNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus        10 ~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      .++++++++.++++||++|.+  |.|++|||++++|||+.+||+||++||||+.+.
T Consensus         3 ~~~~~vi~~~~~~vLl~~r~~--g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~   56 (126)
T 1vcd_A            3 LGAGGVVFNAKREVLLLRDRM--GFWVFPKGHPEPGESLEEAAVREVWEETGVRAE   56 (126)
T ss_dssp             EEEEEEEECTTSCEEEEECTT--SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEE
T ss_pred             eEEEEEEEcCCCEEEEEEECC--CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEee
Confidence            467888888888999999986  899999999999999999999999999999964

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.81  E-value=4.4e-20  Score=123.27  Aligned_cols=56  Identities=30%  Similarity=0.275  Sum_probs=48.2

Q ss_pred             cCEEEEEEE---eCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022            9 RPNVGVCLI---NSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         9 ~~~~~~~i~---~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      ..+|.++++   +.++++||++|.+ +|.|.+|||++|+|||+.+||+||++||||+++.
T Consensus         5 ~~~v~vvi~~~~~~~~~vLl~~r~~-~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~   63 (149)
T 3son_A            5 PFQVLVIPFIKTEANYQFGVLHRTD-ADVWQFVAGGGEDEEAISETAKRESIEELNLDVD   63 (149)
T ss_dssp             CCEEEEEEEEECSSSEEEEEEEESS-SSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSC
T ss_pred             ceEEEEEEEEecCCCeEEEEEEEcC-CCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcc
Confidence            346666665   5567999999987 5899999999999999999999999999999963

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.81  E-value=6e-19  Score=119.65  Aligned_cols=114  Identities=20%  Similarity=0.260  Sum_probs=70.5

Q ss_pred             cCEEEEEEEeCCCcEEEEEEcC----CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceee--EEee--cCceEEeecC
Q 033022            9 RPNVGVCLINSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE--IIAE--VPNWLTYDFP   80 (129)
Q Consensus         9 ~~~~~~~i~~~~~~vLl~~r~~----~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~--~~~~--~~~~~~~~~~   80 (129)
                      +..+++++++.++++||++|..    ++|.|.+|||++++|||+.+||+||++||||+.+..  +...  ......+.|+
T Consensus        27 ~~~~~~~ii~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~  106 (165)
T 3oga_A           27 QRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKTYA  106 (165)
T ss_dssp             EEEEEEEEEEETTEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEEEEEEC-
T ss_pred             eEEEEEEEEeCCCEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccceeeeeeecceeeEecC
Confidence            4455566677788999999884    348999999999999999999999999999999632  2111  0111234555


Q ss_pred             CCeeEe---EEEEec-----ce----eeeeeeeEEecccccCCCCccccccccc
Q 033022           81 PAVKTK---VNRLWG-----GE----WHGQAQKWYASLLLLVPLTLSTHTHFMK  122 (129)
Q Consensus        81 ~~~~~~---~~~~~~-----~~----~~~~~~~W~~~~~~~~~~~~~~~~~~~~  122 (129)
                      ......   ...++.     +.    .+..+.+|++++.+......+.+..++.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~  160 (165)
T 3oga_A          107 DGRQEEIYMIYLIFDCVSANRDICINDEFQDYAWVKPEELALYDLNVATRHTLA  160 (165)
T ss_dssp             -CCEEEEEEEEEEEEEEESCCCCCCCTTEEEEEEECGGGGGGSCBCHHHHHHHH
T ss_pred             CCCceeEEEEEEEEEeeccCCCccCCchheeeEEccHHHHhhCCCCHHHHHHHH
Confidence            543321   111111     11    1246788999887765433344444433

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.81  E-value=1.6e-19  Score=121.77  Aligned_cols=103  Identities=22%  Similarity=0.330  Sum_probs=68.6

Q ss_pred             cCEEEEEEEeCCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeE
Q 033022            9 RPNVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT   85 (129)
Q Consensus         9 ~~~~~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   85 (129)
                      +..+++++++.++++||++|..   ++|.|++|||++++||++.+||+||++||||+.+............+.++.....
T Consensus        29 ~~~~~~~i~~~~~~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~  108 (158)
T 3hhj_A           29 LIVVACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPLTFASHGYETFHLL  108 (158)
T ss_dssp             EEEEEEEEBCTTSEEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSSCEEE
T ss_pred             EEEEEEEEEeCCCEEEEEEeCCCCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceEEEEEEEeeccCCcEEE
Confidence            3456667778889999999985   3589999999999999999999999999999996321000011223455443322


Q ss_pred             eEEEEecc----e---eeeeeeeEEecccccCCC
Q 033022           86 KVNRLWGG----E---WHGQAQKWYASLLLLVPL  112 (129)
Q Consensus        86 ~~~~~~~~----~---~~~~~~~W~~~~~~~~~~  112 (129)
                       +..|...    .   .+..+.+|++++.+....
T Consensus       109 -~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~  141 (158)
T 3hhj_A          109 -MPLYFCSHYKGVAQGREGQNLKWIFINDLDKYP  141 (158)
T ss_dssp             -EEEEEESCCBSCCCCTTSCEEEEEEGGGGGGSC
T ss_pred             -EEEEEEEECCCccCCccccceEEEcHHHHhhCC
Confidence             1122111    1   123577899988776533

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.80  E-value=2.3e-19  Score=125.50  Aligned_cols=55  Identities=20%  Similarity=0.357  Sum_probs=49.8

Q ss_pred             CcCEEEEEEEeCCC-cEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCc
Q 033022            8 YRPNVGVCLINSDS-QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV   63 (129)
Q Consensus         8 ~~~~~~~~i~~~~~-~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~   63 (129)
                      .+..+++++++.++ +|||++|.. +|.|.+|||++|+|||+.+||+||++||||+.
T Consensus        44 ~h~~~~~vv~~~~~~~vLL~~r~~-~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~   99 (197)
T 3fcm_A           44 AHLTSSAFAVNKERNKFLMIHHNI-YNSWAWTGGHSDNEKDQLKVAIKELKEETGVK   99 (197)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEETT-TTEEECEEEECTTCCBHHHHHHHHHHHHHCCS
T ss_pred             ccEEEEEEEEECCCCEEEEEEecC-CCCEECCccccCCCCCHHHHHHHHHHHHHCCC
Confidence            56688888888775 999999874 68999999999999999999999999999998

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.80  E-value=2.7e-19  Score=120.38  Aligned_cols=57  Identities=23%  Similarity=0.312  Sum_probs=50.8

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022            8 YRPNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      .+.++++++++.++++||++|.+.  +|.|++|||++++|||+.+||+||++||||+.+
T Consensus        17 ~~~~v~~vi~~~~~~vLl~~r~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~   75 (160)
T 1rya_A           17 PLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRL   75 (160)
T ss_dssp             CEEEEEEEEECTTSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCC
T ss_pred             cEEEEEEEEEcCCCEEEEEeccCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCCCC
Confidence            445778888888899999999863  589999999999999999999999999999984

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.79  E-value=4.7e-19  Score=124.88  Aligned_cols=55  Identities=22%  Similarity=0.458  Sum_probs=46.2

Q ss_pred             cCEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022            9 RPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         9 ~~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      +.+++++|++ +++|||++|.. +|.|.+|||++++|||+.+||+||++||||+.+.
T Consensus        68 ~~~v~~vv~~-~~~vLLv~r~~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~  122 (205)
T 3q1p_A           68 KVDIRAVVFQ-NEKLLFVKEKS-DGKWALPGGWADVGYTPTEVAAKEVFEETGYEVD  122 (205)
T ss_dssp             EEEEEEEEEE-TTEEEEEEC----CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEE
T ss_pred             cceEEEEEEE-CCEEEEEEEcC-CCcEECCcCccCCCCCHHHHHHHHHHHHHCCccc
Confidence            3466667777 67999999874 6899999999999999999999999999999963

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.79  E-value=1.2e-18  Score=116.42  Aligned_cols=94  Identities=18%  Similarity=0.207  Sum_probs=62.6

Q ss_pred             EEEeCCCcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeEeEEEEec
Q 033022           15 CLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWG   92 (129)
Q Consensus        15 ~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (129)
                      ++++.++++||++|.+.  +|.|.+|||++++|||+.+||+||++||||+++... ... ....+.++......+..+|.
T Consensus        13 ~ii~~~~~vLl~~r~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~-~~~-~~~~~~~~~~~~~~~~~~f~   90 (153)
T 2b0v_A           13 AVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPE-VLT-GIYHWTCASNGTTYLRFTFS   90 (153)
T ss_dssp             EECEETTEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEE-EEE-EEEEEEETTTTEEEEEEEEE
T ss_pred             EEEeeCCEEEEEEEcCCCCCCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccc-eEE-EEEEEeCCCCCcEEEEEEEE
Confidence            44456789999999853  468999999999999999999999999999996422 111 12234444422222222222


Q ss_pred             cee-----------eeeeeeEEecccccC
Q 033022           93 GEW-----------HGQAQKWYASLLLLV  110 (129)
Q Consensus        93 ~~~-----------~~~~~~W~~~~~~~~  110 (129)
                      ...           +..+.+|++++.+..
T Consensus        91 ~~~~~~~~~~~~~~e~~~~~W~~~~el~~  119 (153)
T 2b0v_A           91 GQVVSFDPDRKLDTGIVRAAWFSIDEIRA  119 (153)
T ss_dssp             EEEEEECTTSCCCTTEEEEEEEEHHHHHH
T ss_pred             EEeCCCCCCCCCCCCeeeEEEecHHHHhh
Confidence            221           135778999876654

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.79  E-value=8.8e-19  Score=116.93  Aligned_cols=59  Identities=27%  Similarity=0.335  Sum_probs=49.8

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcCC---CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceee
Q 033022            8 YRPNVGVCLINSDSQIFVASRLNV---PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE   66 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~~---~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~   66 (129)
                      .+.+|++++++.++++||+++.+.   ++.|++|||++|+|||+++||+||++||||+++..
T Consensus         4 ~~~~v~vi~~~~~~~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~   65 (145)
T 2w4e_A            4 GPRAVFILPVTAQGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASE   65 (145)
T ss_dssp             CCEEEEEEEEETTSEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSE
T ss_pred             eCCEEEEEEEcCCCEEEEEEEEecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCe
Confidence            345788888898899988776532   24899999999999999999999999999998643

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.79  E-value=3.7e-19  Score=118.19  Aligned_cols=56  Identities=27%  Similarity=0.353  Sum_probs=49.1

Q ss_pred             CcCEEEEEEEeC-CCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022            8 YRPNVGVCLINS-DSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         8 ~~~~~~~~i~~~-~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      .+.+++++|++. ++++||++|.  +|.|.+|||++++|||+.+||+||++||||+.+.
T Consensus        17 ~~~~~~~vi~~~~~~~vLl~~r~--~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~   73 (148)
T 2azw_A           17 TRYAAYIIVSKPENNTMVLVQAP--NGAYFLPGGEIEGTETKEEAIHREVLEELGISVE   73 (148)
T ss_dssp             ECCEEEEECEEGGGTEEEEEECT--TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEE
T ss_pred             eeeEEEEEEECCCCCeEEEEEcC--CCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeE
Confidence            455777777776 6899999985  4899999999999999999999999999999963

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.79  E-value=1.2e-18  Score=121.33  Aligned_cols=54  Identities=28%  Similarity=0.455  Sum_probs=46.1

Q ss_pred             CEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022           10 PNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus        10 ~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      ..++++|.+ +++|||++|.. +|.|.+|||++++|||+.+||+||++||||+.+.
T Consensus         5 ~v~~~vi~~-~~~vLL~~r~~-~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~   58 (188)
T 3fk9_A            5 RVTNCIVVD-HDQVLLLQKPR-RGWWVAPGGKMEAGESILETVKREYWEETGITVK   58 (188)
T ss_dssp             EEEEEEEEE-TTEEEEEECTT-TCCEECCEEECCTTCCHHHHHHHHHHHHHSCEES
T ss_pred             EEEEEEEEE-CCEEEEEEeCC-CCeEECCeecccCCCCHHHHHHHHHHHHHCCCCC
Confidence            344445554 67999999865 7899999999999999999999999999999863

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.79  E-value=9.7e-19  Score=121.49  Aligned_cols=59  Identities=27%  Similarity=0.368  Sum_probs=52.2

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcC----CCCcEEc-CeeecCCCCCHHHHHHHHHHHHhCCceee
Q 033022            8 YRPNVGVCLINSDSQIFVASRLN----VPGAWQM-PQGGIEDGEDPKLAAMRELREETGIVSAE   66 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~----~~g~w~~-PgG~ve~gEs~~~aa~RE~~EEtGl~~~~   66 (129)
                      +++++++++++.++++||++|..    ++|.|++ |||++++|||+++||+||++||||+.+..
T Consensus        31 ~~~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~   94 (190)
T 1hzt_A           31 LHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITP   94 (190)
T ss_dssp             CEECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSC
T ss_pred             eEEEEEEEEEcCCCEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchh
Confidence            45678888888889999999974    3699999 99999999999999999999999999644

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.79  E-value=1.3e-19  Score=120.46  Aligned_cols=56  Identities=27%  Similarity=0.571  Sum_probs=48.7

Q ss_pred             CEEEEEEEeCC-CcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceee
Q 033022           10 PNVGVCLINSD-SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE   66 (129)
Q Consensus        10 ~~~~~~i~~~~-~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~   66 (129)
                      +.++++|++.+ +++||++|.. +|.|.+|||++++|||+.+||+||++||||+.+..
T Consensus         5 ~~~~~~i~~~~~~~vLl~~r~~-~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~   61 (146)
T 2jvb_A            5 PVRGAAIFNENLSKILLVQGTE-SDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTD   61 (146)
T ss_dssp             CCEEEEEBCTTSSEEEEECCSS-SSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSS
T ss_pred             EEEEEEEEeCCCCEEEEEEEcC-CCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchH
Confidence            45667777775 8999999875 68999999999999999999999999999998643

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.79  E-value=1.5e-18  Score=115.63  Aligned_cols=99  Identities=27%  Similarity=0.299  Sum_probs=67.4

Q ss_pred             CEEEEEEEeCCCcEEEEEEcCC---CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeEe
Q 033022           10 PNVGVCLINSDSQIFVASRLNV---PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTK   86 (129)
Q Consensus        10 ~~~~~~i~~~~~~vLl~~r~~~---~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   86 (129)
                      ..+++++++.++++||++|...   +|.|++|||++++|||+.+||.||++||||+.+.... .. ....+.++..... 
T Consensus        22 ~~~~~~i~~~~~~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~-~~-~~~~~~~~~~~~~-   98 (153)
T 3ees_A           22 IPVVAGFLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGE-LK-LACTHSYGDVGIL-   98 (153)
T ss_dssp             EEEEEEEEEETTEEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCC-EE-EEEEEEETTEEEE-
T ss_pred             EEEEEEEEEECCEEEEEEeCCCCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCc-eE-EEEEEecCCCeEE-
Confidence            3566667777899999999853   4899999999999999999999999999999863221 11 1134455544332 


Q ss_pred             EEEEeccee-------eeeeeeEEecccccCC
Q 033022           87 VNRLWGGEW-------HGQAQKWYASLLLLVP  111 (129)
Q Consensus        87 ~~~~~~~~~-------~~~~~~W~~~~~~~~~  111 (129)
                      +..|.....       +..+..|++++.+...
T Consensus        99 ~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~  130 (153)
T 3ees_A           99 ILFYEILYWKGEPRAKHHMMLEWIHPEELKHR  130 (153)
T ss_dssp             EEEEEECEEESCCCCSSSSEEEEECGGGGGGS
T ss_pred             EEEEEEEECCCCcCCCccceEEEecHHHhhhC
Confidence            222222111       1356789998877653

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.78  E-value=1.8e-18  Score=115.96  Aligned_cols=54  Identities=20%  Similarity=0.409  Sum_probs=47.2

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022            8 YRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      ++..++++|++ ++++||++|   +|.|.+|||++++|||+.+||+||++||||+.+.
T Consensus        18 ~~~~~~~ii~~-~~~vLl~~r---~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~   71 (154)
T 2pqv_A           18 FGVRATALIVQ-NHKLLVTKD---KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQ   71 (154)
T ss_dssp             EEEEEEECCEE-TTEEEEEEE---TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEE
T ss_pred             EeEEEEEEEEE-CCEEEEEec---CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeee
Confidence            45566666665 579999999   6899999999999999999999999999999964

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.78  E-value=7.6e-19  Score=115.68  Aligned_cols=56  Identities=36%  Similarity=0.592  Sum_probs=47.1

Q ss_pred             CEEEEEEEeCCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022           10 PNVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus        10 ~~~~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      ..++++|++.++++||++|..   ++|.|++|||++++|||+.+||+||++||||+.+.
T Consensus         9 ~~~~~~ii~~~~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~   67 (140)
T 2rrk_A            9 IEVVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEAT   67 (140)
T ss_dssp             EEEEEEEEEETTEEEEEECCSSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEE
T ss_pred             ceEEEEEEEcCCEEEEEEcCCCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeee
Confidence            344444557778999999974   35899999999999999999999999999999863

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.78  E-value=8.2e-19  Score=120.53  Aligned_cols=58  Identities=24%  Similarity=0.328  Sum_probs=51.1

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcC----CCCcEEc-CeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022            8 YRPNVGVCLINSDSQIFVASRLN----VPGAWQM-PQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~----~~g~w~~-PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      .+.++++++++.++++||++|..    ++|.|++ |||++++|||+.+||+||++||||+.+.
T Consensus        36 ~~~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~   98 (180)
T 2fkb_A           36 RHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGV   98 (180)
T ss_dssp             CEEEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSC
T ss_pred             eeeEEEEEEECCCCEEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCcc
Confidence            45677888888889999999974    2688999 9999999999999999999999999853

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.78  E-value=2.2e-18  Score=120.68  Aligned_cols=59  Identities=32%  Similarity=0.682  Sum_probs=50.3

Q ss_pred             CCcCEEEEEEE--eCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022            7 GYRPNVGVCLI--NSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         7 ~~~~~~~~~i~--~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      +++..++++++  +.+++|||++|.+.+|.|++|||++|+|||+++||+||++||||+++.
T Consensus        38 ~~~~~~~~vi~~~~~~~~vLLv~r~~~~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~   98 (194)
T 2fvv_A           38 GYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGT   98 (194)
T ss_dssp             SCEEEEEEEEESSTTCCEEEEEECSSCTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEE
T ss_pred             CccccEEEEEEEECCCCEEEEEEEeCCCCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccc
Confidence            35555666666  346899999998778999999999999999999999999999999863

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.77  E-value=1.4e-18  Score=116.35  Aligned_cols=51  Identities=33%  Similarity=0.564  Sum_probs=44.3

Q ss_pred             EEEeCCCcEEEEEEcC-CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022           15 CLINSDSQIFVASRLN-VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus        15 ~i~~~~~~vLl~~r~~-~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      ++++.++++||++|.. .+|.|.+|||++++|||+.+||+||++||||+++.
T Consensus        10 ~ii~~~~~vLl~~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~   61 (153)
T 3shd_A           10 CVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQ   61 (153)
T ss_dssp             EEEEETTEEEEEEEEETTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCC
T ss_pred             EEEEeCCEEEEEEecCCCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccc
Confidence            4555678999999863 34789999999999999999999999999999963

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.77  E-value=2.3e-18  Score=117.54  Aligned_cols=54  Identities=28%  Similarity=0.462  Sum_probs=43.5

Q ss_pred             EEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceee
Q 033022           11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE   66 (129)
Q Consensus        11 ~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~   66 (129)
                      .+++++++.++++||++|.  +|.|.+|||++++|||+.+||+||++||||+.+..
T Consensus        17 ~~~~~ii~~~~~vLL~~r~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~   70 (163)
T 3f13_A           17 RRATAIIEMPDGVLVTASR--GGRYNLPGGKANRGELRSQALIREIREETGLRINS   70 (163)
T ss_dssp             EEEEEECEETTEEEEEECC-----BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCE
T ss_pred             EEEEEEEEeCCEEEEEEEC--CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccce
Confidence            4444555666799999986  58999999999999999999999999999999643

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.77  E-value=4e-18  Score=118.52  Aligned_cols=100  Identities=17%  Similarity=0.222  Sum_probs=65.5

Q ss_pred             EEEEEEEeCCCcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeEe--
Q 033022           11 NVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTK--   86 (129)
Q Consensus        11 ~~~~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~--   86 (129)
                      ++++++++ +++|||++|...  +|.|.+|||++++|||+++||+||++||||+++.. .... .  .+.++......  
T Consensus        42 ~v~~ii~~-~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~-~~~~-~--~~~~~~~~~~~~~  116 (189)
T 3cng_A           42 IVGCIPEW-ENKVLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANARVEI-RELY-A--VYSLPHISQVYML  116 (189)
T ss_dssp             EEEEEEEE-TTEEEEEEESSSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEE-EEEE-E--EEEEGGGTEEEEE
T ss_pred             EEEEEEEe-CCEEEEEEccCCCCCCeEECceeeccCCCCHHHHHHHHHHHHHCCcccc-ceeE-E--EEecCCCcEEEEE
Confidence            56666666 779999999863  58999999999999999999999999999999632 2211 1  23333322111  


Q ss_pred             -EEEEecc----eeeeeeeeEEeccccc-CCCCcc
Q 033022           87 -VNRLWGG----EWHGQAQKWYASLLLL-VPLTLS  115 (129)
Q Consensus        87 -~~~~~~~----~~~~~~~~W~~~~~~~-~~~~~~  115 (129)
                       .+....+    ..+..+.+|++++.+. ..+.++
T Consensus       117 f~~~~~~~~~~~~~E~~~~~W~~~~el~~~~l~~~  151 (189)
T 3cng_A          117 FRAKLLDLDFFPGIESLEVRLFGEQEIPWNDIAFR  151 (189)
T ss_dssp             EEEEECCSCCCCCTTEEEEEEECTTTCCGGGBSCH
T ss_pred             EEEEeCCCccCCCccceeEEEECHHHcCcccccCh
Confidence             1111111    1123578999988776 344444

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.77  E-value=1.2e-18  Score=121.34  Aligned_cols=59  Identities=27%  Similarity=0.514  Sum_probs=49.8

Q ss_pred             CCcCEEEEEEEeCCC--cEEEEEEcC----CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022            7 GYRPNVGVCLINSDS--QIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         7 ~~~~~~~~~i~~~~~--~vLl~~r~~----~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      +.+.++++++++.++  ++||++|..    .+|.|++|||++++|||+.+||+||++||||+++.
T Consensus        32 ~~~~~~~~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~   96 (194)
T 1nqz_A           32 HYRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPA   96 (194)
T ss_dssp             -CEEEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGG
T ss_pred             CCceEEEEEEEecCCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCcc
Confidence            355677777778777  999999874    46899999999999999999999999999999863

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.76  E-value=4.1e-18  Score=119.34  Aligned_cols=58  Identities=33%  Similarity=0.442  Sum_probs=49.4

Q ss_pred             CcCEEEEEEEeC-CCcEEEEEEcC-CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022            8 YRPNVGVCLINS-DSQIFVASRLN-VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         8 ~~~~~~~~i~~~-~~~vLl~~r~~-~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      .+.+|++++++. +++|||++|.. .+|.|.+|||++++|||+.+||+||++||||+.+.
T Consensus        25 ~~v~v~~~v~~~~~~~vLL~~r~~~~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~   84 (199)
T 3h95_A           25 HQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSE   84 (199)
T ss_dssp             -CCEEEEEEEETTTTEEEEEEESSSSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEE
T ss_pred             ccceEEEEEEeCCCCEEEEEEEcCCCCCCEECCccccCCCCCHHHHHHHHHHHHhCCccc
Confidence            556777777765 48999999875 35899999999999999999999999999999963

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.76  E-value=3.7e-18  Score=120.37  Aligned_cols=53  Identities=19%  Similarity=0.438  Sum_probs=47.0

Q ss_pred             cCEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022            9 RPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus         9 ~~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      +..++++|+++ ++|||++|.  +|.|.+|||++++|||+.+||+||++||||+.+
T Consensus        70 ~~~v~~vv~~~-~~vLLvrr~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~  122 (206)
T 3o8s_A           70 KLDTRAAIFQE-DKILLVQEN--DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDV  122 (206)
T ss_dssp             EEEEEEEEEET-TEEEEEECT--TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEE
T ss_pred             CccEEEEEEEC-CEEEEEEec--CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcc
Confidence            34566677764 799999988  689999999999999999999999999999986

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.75  E-value=8.3e-18  Score=112.74  Aligned_cols=100  Identities=16%  Similarity=0.133  Sum_probs=61.7

Q ss_pred             CcCEEEEEEEeCCCc----EEEEEEcC--CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCC
Q 033022            8 YRPNVGVCLINSDSQ----IFVASRLN--VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPP   81 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~----vLl~~r~~--~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   81 (129)
                      .+.+++++|.+ +++    +||++|..  ++| |.+|||++++|||+.+||+||++||||+.+... ... ....+.+..
T Consensus         7 ~~~~~~~ii~~-~~~~~~~vLl~~r~~~~~~g-w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~-~~~-~~~~~~~~~   82 (155)
T 2b06_A            7 TILTNICLIED-LETQRVVMQYRAPENNRWSG-YAFPGGHVENDEAFAESVIREIYEETGLTIQNP-QLV-GIKNWPLDT   82 (155)
T ss_dssp             EEEEEEEEEEE-TTTTEEEEEEEC-----CCE-EECCCCBCCTTSCHHHHHHHHHHHHHSEEEESC-EEE-EEEEEECTT
T ss_pred             cEEEEEEEEEE-CCCCeEEEEEEECCCCCCCC-EeccceecCCCCCHHHHHHHHHHHHhCccccCC-cEE-EEEeeccCC
Confidence            45566666666 456    99988875  345 999999999999999999999999999986321 111 112233322


Q ss_pred             CeeEeEEEEeccee-------eeeeeeEEecccccCC
Q 033022           82 AVKTKVNRLWGGEW-------HGQAQKWYASLLLLVP  111 (129)
Q Consensus        82 ~~~~~~~~~~~~~~-------~~~~~~W~~~~~~~~~  111 (129)
                      ........|.....       +..+.+|++++.+...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~  119 (155)
T 2b06_A           83 GGRYIVICYKATEFSGTLQSSEEGEVSWVQKDQIPNL  119 (155)
T ss_dssp             SCEEEEEEEEECEEEECCCCBTTBEEEEEEGGGGGGS
T ss_pred             CceEEEEEEEEEecCCCCCCCcceeeEEeeHHHhhhC
Confidence            22222222222111       2356899999877654

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.75  E-value=1.6e-18  Score=120.18  Aligned_cols=57  Identities=28%  Similarity=0.409  Sum_probs=46.8

Q ss_pred             CcCEEEEEEEe---C----CCcEEEEEEc---------CCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022            8 YRPNVGVCLIN---S----DSQIFVASRL---------NVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus         8 ~~~~~~~~i~~---~----~~~vLl~~r~---------~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      .+.+|+++|+.   .    +++|||++|.         ..+|.|.+|||++++|||+.+||+||++||||+++
T Consensus        26 ~~~~v~~vv~~~~~~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~   98 (187)
T 3i9x_A           26 DGYTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTD   98 (187)
T ss_dssp             SEEEEEEEEEEEEEETTEEEEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCS
T ss_pred             ccceEEEEEEEEcCCCCCCCCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHCCCC
Confidence            33566665553   2    3589999993         35689999999999999999999999999999986

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.75  E-value=4e-18  Score=116.37  Aligned_cols=56  Identities=36%  Similarity=0.608  Sum_probs=48.9

Q ss_pred             cCEEEEEEEeCCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceee
Q 033022            9 RPNVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE   66 (129)
Q Consensus         9 ~~~~~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~   66 (129)
                      +.+|++++++ ++++||++|.+   .+|.|++|||++|+|||+++||+||++||||+ +..
T Consensus        34 ~~~v~vii~~-~~~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~   92 (170)
T 1v8y_A           34 KPAVAVIALR-EGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGD   92 (170)
T ss_dssp             CCEEEEEEEE-TTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEE
T ss_pred             CCeEEEEEEE-CCEEEEEEEEeCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcC
Confidence            4578888888 88999998764   35799999999999999999999999999999 643

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.75  E-value=1.8e-18  Score=119.17  Aligned_cols=56  Identities=27%  Similarity=0.393  Sum_probs=49.7

Q ss_pred             CEEEEEEEeCCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022           10 PNVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus        10 ~~~~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      .++++++++.++++||++|.+   .+|.|++|||++++|||+.+||+||++||||+.+.
T Consensus        42 ~~v~v~i~~~~~~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~  100 (182)
T 2yvp_A           42 AASFVLPVTERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAE  100 (182)
T ss_dssp             EEEEEEEBCTTSEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECS
T ss_pred             CEEEEEEEcCCCEEEEEEeccCCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcc
Confidence            477778888889999999874   35799999999999999999999999999999864

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.75  E-value=8.5e-19  Score=113.82  Aligned_cols=97  Identities=32%  Similarity=0.499  Sum_probs=63.5

Q ss_pred             EEEEEeCCCcEEEEEEcCC---CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeE---e
Q 033022           13 GVCLINSDSQIFVASRLNV---PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT---K   86 (129)
Q Consensus        13 ~~~i~~~~~~vLl~~r~~~---~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~---~   86 (129)
                      ++++++.++++||++|...   +|.|++|||++++|||+.+||.||++||||+.+... .... ...+.++.....   +
T Consensus         8 ~~ii~~~~~~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~-~~~~-~~~~~~~~~~~~~~~~   85 (129)
T 1mut_A            8 VGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHF-SLFE-KLEYEFPDRHITLWFW   85 (129)
T ss_dssp             CEECEETTTEEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEE-CCCC-CCBCCCSSCEEECCCE
T ss_pred             EEEEEecCCEEEEEEeCCCCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccc-eEEE-EEEEecCCceEEEEEE
Confidence            3445677889999999853   589999999999999999999999999999996432 2221 123344433221   1


Q ss_pred             EEEEeccee---eeeeeeEEecccccCC
Q 033022           87 VNRLWGGEW---HGQAQKWYASLLLLVP  111 (129)
Q Consensus        87 ~~~~~~~~~---~~~~~~W~~~~~~~~~  111 (129)
                      .+....+..   +..+..|++++.+...
T Consensus        86 ~~~~~~~~~~~~e~~~~~W~~~~el~~~  113 (129)
T 1mut_A           86 LVERWEGEPWGKEGQPGEWMSLVGLNAD  113 (129)
T ss_dssp             EEEECSSCCCCCSSCCCEEEESSSCCTT
T ss_pred             EEEccCCccCCcccceeEEeCHHHcccc
Confidence            111111111   2345689998877543

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.75  E-value=7.7e-18  Score=123.52  Aligned_cols=57  Identities=26%  Similarity=0.473  Sum_probs=50.2

Q ss_pred             CEEEEEEEeC-CCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceee
Q 033022           10 PNVGVCLINS-DSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE   66 (129)
Q Consensus        10 ~~~~~~i~~~-~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~   66 (129)
                      .++++++++. ++++||++|.+.+|.|.+|||++|+|||+++||+||++||||+++..
T Consensus       102 ~~v~avv~~~~~~~vLLv~r~~~~g~W~lPgG~ve~gEs~~eAA~REl~EEtGl~~~~  159 (271)
T 2a6t_A          102 PVRGAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSS  159 (271)
T ss_dssp             CEEEEEEBCSSSSEEEEEEESSTTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTT
T ss_pred             CeEEEEEEECCCCEEEEEEEeCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCcee
Confidence            4567777776 48999999987779999999999999999999999999999999644

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.74  E-value=2.7e-17  Score=115.33  Aligned_cols=56  Identities=29%  Similarity=0.354  Sum_probs=47.2

Q ss_pred             CEEEEEEEeCCCcEEEEEEcCC---CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceee
Q 033022           10 PNVGVCLINSDSQIFVASRLNV---PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE   66 (129)
Q Consensus        10 ~~~~~~i~~~~~~vLl~~r~~~---~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~   66 (129)
                      .+|++++++.+ ++||++|.+.   ++.|++|||++|+|||+++||+||++||||+.+..
T Consensus        50 ~av~vl~~~~~-~vLLvrq~r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~  108 (198)
T 1vhz_A           50 EAVMIVPIVDD-HLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGAND  108 (198)
T ss_dssp             CEEEEEEEETT-EEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEE
T ss_pred             CEEEEEEEECC-EEEEEEcccCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCc
Confidence            36666667777 9999987642   36899999999999999999999999999998643

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.73  E-value=8e-18  Score=120.38  Aligned_cols=58  Identities=21%  Similarity=0.328  Sum_probs=49.0

Q ss_pred             CcCEEEEEEE---eCCCcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022            8 YRPNVGVCLI---NSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         8 ~~~~~~~~i~---~~~~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      .+.+|+++|+   +.+++|||++|...  +|.|.+|||++++|||+.+||+||++||||+.+.
T Consensus        12 p~v~v~~vi~~~~~~~~~vLLv~r~~~~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~   74 (226)
T 2fb1_A           12 FYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENV   74 (226)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSC
T ss_pred             CeEEEEEEEEEEeCCCCEEEEEECcCCCCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCC
Confidence            3456666776   44679999999863  4899999999999999999999999999999964

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.73  E-value=3.4e-18  Score=116.57  Aligned_cols=57  Identities=30%  Similarity=0.358  Sum_probs=50.8

Q ss_pred             cCEEEEEEEeCCCcEEEEEEcC----CCCcEE-cCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022            9 RPNVGVCLINSDSQIFVASRLN----VPGAWQ-MPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         9 ~~~~~~~i~~~~~~vLl~~r~~----~~g~w~-~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      +.++++++++.++++||++|..    ++|.|+ +|||++++|||+.+||+||++||||+.+.
T Consensus        34 ~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~   95 (171)
T 1q27_A           34 VRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEID   95 (171)
T ss_dssp             CEEEEEEEEETTTEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTS
T ss_pred             ceEEEEEEECCCCeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCccc
Confidence            5678888888889999999864    368998 99999999999999999999999999963

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.72  E-value=3.7e-17  Score=119.79  Aligned_cols=95  Identities=25%  Similarity=0.323  Sum_probs=63.9

Q ss_pred             EEEEeCCCcEEEEEEcCC-CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeE-eEEEEe
Q 033022           14 VCLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT-KVNRLW   91 (129)
Q Consensus        14 ~~i~~~~~~vLl~~r~~~-~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   91 (129)
                      +++++.++++||++|... +|.|++|||++|+|||+++||+||++||||+++..+. .+ ....+.++..... +.....
T Consensus       144 iv~v~~~~~vLL~rr~~~~~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~-~~-~~~~~~~~~~~~~~f~a~~~  221 (269)
T 1vk6_A          144 IVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLR-YV-TSQPWPFPQSLMTAFMAEYD  221 (269)
T ss_dssp             EEEEEETTEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEE-EE-EEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEeCCEEEEEEecCCCCCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEE-EE-EEEecCCCCEEEEEEEEEEC
Confidence            345566789999999864 4899999999999999999999999999999964332 11 1123444433211 122222


Q ss_pred             cce-----eeeeeeeEEecccccC
Q 033022           92 GGE-----WHGQAQKWYASLLLLV  110 (129)
Q Consensus        92 ~~~-----~~~~~~~W~~~~~~~~  110 (129)
                      .+.     -+..+.+||+.+.+..
T Consensus       222 ~~~~~~~~~E~~~~~W~~~~el~~  245 (269)
T 1vk6_A          222 SGDIVIDPKELLEANWYRYDDLPL  245 (269)
T ss_dssp             ECCCCCCTTTEEEEEEEETTSCCS
T ss_pred             CCCcCCCCcceEEEEEEEHHHhhh
Confidence            221     1246789999887754

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.72  E-value=1.9e-17  Score=115.41  Aligned_cols=57  Identities=18%  Similarity=0.283  Sum_probs=47.7

Q ss_pred             cCEEEEEEEeC-CCcEEEEEEcC---------CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceee
Q 033022            9 RPNVGVCLINS-DSQIFVASRLN---------VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE   66 (129)
Q Consensus         9 ~~~~~~~i~~~-~~~vLl~~r~~---------~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~   66 (129)
                      +.+|++++++. ++++||+++.+         .++.|++|||++| |||+.+||+||++||||+.+..
T Consensus        45 ~~av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~  111 (191)
T 3o6z_A           45 GNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGE  111 (191)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSC
T ss_pred             CCEEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCc
Confidence            35677777775 58999998875         4678999999999 9999999999999999999643

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.72  E-value=2e-18  Score=122.47  Aligned_cols=58  Identities=16%  Similarity=0.330  Sum_probs=46.6

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcCCC------CcEEc-CeeecCCCCC--H----HHHHHHHHHHHhCCcee
Q 033022            8 YRPNVGVCLINSDSQIFVASRLNVP------GAWQM-PQGGIEDGED--P----KLAAMRELREETGIVSA   65 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~~~------g~w~~-PgG~ve~gEs--~----~~aa~RE~~EEtGl~~~   65 (129)
                      ++..+..+|+..++++||++|...+      |.|.+ |||+||+|||  +    ++||+||++||||+++.
T Consensus        66 ~~q~i~~~II~~~grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~  136 (211)
T 3e57_A           66 TKQVIPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLR  136 (211)
T ss_dssp             EEEEEEEEEEEETTEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEE
T ss_pred             ccceEEEEEEEECCEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeee
Confidence            6777777888788999999997533      68998 9999999999  4    99999999999999853

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.72  E-value=1.5e-17  Score=119.93  Aligned_cols=57  Identities=26%  Similarity=0.496  Sum_probs=47.7

Q ss_pred             cCEEEEEEE---eCCCcEEEEEEcCC--CCcEEcCeeecCC--CCCHHHHHHHHHHHHhCCcee
Q 033022            9 RPNVGVCLI---NSDSQIFVASRLNV--PGAWQMPQGGIED--GEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         9 ~~~~~~~i~---~~~~~vLl~~r~~~--~g~w~~PgG~ve~--gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      +.+|+++|+   +.+++|||++|...  +|.|.+|||++++  |||+.+||+||++||||+++.
T Consensus        22 ~v~v~~vi~~~~~~~~~vLLv~R~~~~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~   85 (240)
T 3gz5_A           22 LLTVDAVLFTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPP   85 (240)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEECCSSSSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCS
T ss_pred             ccEEEEEEEEEeCCCcEEEEEECcCCCCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCC
Confidence            346666666   34469999999863  4899999999999  999999999999999999963

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.71  E-value=3.6e-17  Score=115.28  Aligned_cols=57  Identities=30%  Similarity=0.590  Sum_probs=49.8

Q ss_pred             CEEEEEEEeCCCcEEEEEEcCC---CCcEEcCeeecC-CCCCHHHHHHHHHHHHhCCceee
Q 033022           10 PNVGVCLINSDSQIFVASRLNV---PGAWQMPQGGIE-DGEDPKLAAMRELREETGIVSAE   66 (129)
Q Consensus        10 ~~~~~~i~~~~~~vLl~~r~~~---~g~w~~PgG~ve-~gEs~~~aa~RE~~EEtGl~~~~   66 (129)
                      .+|++++++.++++||++|.+.   +|.|++|||+++ +|||+.+||+||++||||+.+..
T Consensus        44 ~av~v~i~~~~~~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~  104 (207)
T 1mk1_A           44 GAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQAST  104 (207)
T ss_dssp             CEEEEEECCTTSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEE
T ss_pred             CEEEEEEEcCCCEEEEEEeecCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccc
Confidence            4677788888899999988743   468999999999 99999999999999999999643

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.70  E-value=1.6e-17  Score=124.23  Aligned_cols=57  Identities=21%  Similarity=0.288  Sum_probs=48.6

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022            8 YRPNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      .+.+|+++++ .++++||++|.+.  +|.|++|||++|+|||+++||+||++||||+++.
T Consensus       202 ~~~~v~~vi~-~~~~vLL~~r~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~  260 (341)
T 2qjo_A          202 TFITTDAVVV-QAGHVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVP  260 (341)
T ss_dssp             CEEEEEEEEE-ETTEEEEEECCSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSC
T ss_pred             CceEEEEEEE-eCCEEEEEEecCCCCCCeEECCCCcCCCCCCHHHHHHHHHhhhhCCccc
Confidence            4456666666 4679999999863  4899999999999999999999999999999963

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.70  E-value=1.9e-17  Score=124.40  Aligned_cols=57  Identities=30%  Similarity=0.364  Sum_probs=48.3

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022            8 YRPNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      .+.+++++|+ .++++||++|.+.  +|.|++|||++|+|||+++||+||++||||+++.
T Consensus       207 ~~~~v~~vv~-~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~  265 (352)
T 2qjt_B          207 NFVTVDALVI-VNDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLT  265 (352)
T ss_dssp             EEEEEEEEEE-ETTEEEEEEESSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCC
T ss_pred             CceEEEEEEE-ECCEEEEEEEcCCCCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcc
Confidence            3445666666 5679999999864  4899999999999999999999999999999853

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.68  E-value=2e-16  Score=111.77  Aligned_cols=57  Identities=23%  Similarity=0.350  Sum_probs=48.2

Q ss_pred             CEEEEEEEe-CCCcEEEEEEcCC--------CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceee
Q 033022           10 PNVGVCLIN-SDSQIFVASRLNV--------PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE   66 (129)
Q Consensus        10 ~~~~~~i~~-~~~~vLl~~r~~~--------~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~   66 (129)
                      .+|++++++ .++++||+++.+.        ++.|++|||++|+|||+++||+||++||||+.+..
T Consensus        58 ~av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~  123 (209)
T 1g0s_A           58 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKR  123 (209)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCC
T ss_pred             CEEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCc
Confidence            577777888 5689999876542        35799999999999999999999999999999643

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.68  E-value=2.1e-16  Score=112.66  Aligned_cols=56  Identities=21%  Similarity=0.243  Sum_probs=48.5

Q ss_pred             cCEEEEEEEeC-CCcEEEEEEcC---C-------------------------------CCcEEcCeeecCC-CCCHHHHH
Q 033022            9 RPNVGVCLINS-DSQIFVASRLN---V-------------------------------PGAWQMPQGGIED-GEDPKLAA   52 (129)
Q Consensus         9 ~~~~~~~i~~~-~~~vLl~~r~~---~-------------------------------~g~w~~PgG~ve~-gEs~~~aa   52 (129)
                      +.+|++++++. ++++||+++.+   .                               ++.|++|||++|+ |||+++||
T Consensus        36 ~~aV~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~welPgG~ve~~gEs~~eaA  115 (218)
T 3q91_A           36 HDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPALPGSAGVTVELCAGLVDQPGLSLEEVA  115 (218)
T ss_dssp             CCEEEEEEEEGGGTEEEEEEEECHHHHHHHTC-------------------------CCEEEECEEEECCSSSCCHHHHH
T ss_pred             CCeEEEEEEECCCCEEEEEEccccccccccccccccccccccccccccccccccccCCCeEEECCcceeCCCCCCHHHHH
Confidence            56888888884 57899988764   1                               4689999999999 99999999


Q ss_pred             HHHHHHHhCCce
Q 033022           53 MRELREETGIVS   64 (129)
Q Consensus        53 ~RE~~EEtGl~~   64 (129)
                      +||++||||+.+
T Consensus       116 ~REl~EEtGl~~  127 (218)
T 3q91_A          116 CKEAWEECGYHL  127 (218)
T ss_dssp             HHHHHHHHCBCC
T ss_pred             HHHHHHHhCCcc
Confidence            999999999986

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.66  E-value=1.4e-16  Score=120.72  Aligned_cols=43  Identities=33%  Similarity=0.561  Sum_probs=40.0

Q ss_pred             CcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022           21 SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus        21 ~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      .+|||++|.. .|.|++|||++|+|||+++||+||++||||+++
T Consensus        38 ~~vLLv~r~~-~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~   80 (364)
T 3fjy_A           38 IEVCIVHRPK-YDDWSWPKGKLEQNETHRHAAVREIGEETGSPV   80 (364)
T ss_dssp             EEEEEEEETT-TTEEECCEEECCTTCCHHHHHHHHHHHHHSCCE
T ss_pred             eEEEEEEcCC-CCCEECCcCCCCCCCCHHHHHHHHHHHHhCCee
Confidence            4899999965 589999999999999999999999999999996

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.65  E-value=8.4e-17  Score=108.08  Aligned_cols=54  Identities=26%  Similarity=0.446  Sum_probs=44.8

Q ss_pred             EEEEEEEeC---CCcEEEEEEcC---CCCcEEcCeeecCCCCCHH-HHHHHHHHHHhC-Cce
Q 033022           11 NVGVCLINS---DSQIFVASRLN---VPGAWQMPQGGIEDGEDPK-LAAMRELREETG-IVS   64 (129)
Q Consensus        11 ~~~~~i~~~---~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~-~aa~RE~~EEtG-l~~   64 (129)
                      .++++|.+.   ++++||++|..   ++|.|+||||++++||++. +||+||++|||| +.+
T Consensus        21 ~~~~vi~~~~~~~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~   82 (155)
T 1x51_A           21 SATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPA   82 (155)
T ss_dssp             EEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCS
T ss_pred             EEEEEEEecCCCCCEEEEEECCCCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcce
Confidence            444455554   47999999875   3589999999999999996 999999999999 764

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.65  E-value=8.2e-16  Score=108.66  Aligned_cols=57  Identities=33%  Similarity=0.459  Sum_probs=45.0

Q ss_pred             cCEEEEEEEe-CC---CcEEEEEEcCC---CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022            9 RPNVGVCLIN-SD---SQIFVASRLNV---PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         9 ~~~~~~~i~~-~~---~~vLl~~r~~~---~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      +.+|+++.+. .+   +++||+++.+.   ++.|++|||++++||++++||+||++||||+.+.
T Consensus        61 ~~av~v~~v~~~~~~~~~vlLv~q~R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~  124 (212)
T 2dsc_A           61 ADGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGD  124 (212)
T ss_dssp             CSEEEEEEEEECTTSCCEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCE
T ss_pred             CCEEEEEEEEeCCCCCcEEEEEEeecCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCcc
Confidence            3466665443 22   47999886542   3589999999999999999999999999999954

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.64  E-value=1.1e-15  Score=112.03  Aligned_cols=57  Identities=25%  Similarity=0.459  Sum_probs=46.6

Q ss_pred             CcCEEEEEEEe--C---CCcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022            8 YRPNVGVCLIN--S---DSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus         8 ~~~~~~~~i~~--~---~~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      .+.+|+++|+.  .   +++|||++|...  +|.|.+|||++++|||+.+||+||++||||+++
T Consensus        38 p~v~v~~vv~~~~~~~~~~~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v  101 (273)
T 2fml_A           38 PSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVI  101 (273)
T ss_dssp             CEEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCC
T ss_pred             CceEEEEEEEEEcCCCCCcEEEEEEccCCCCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCC
Confidence            34466666653  2   348999999864  489999999999999999999999999999763

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.63  E-value=6.4e-16  Score=117.61  Aligned_cols=96  Identities=14%  Similarity=0.171  Sum_probs=67.9

Q ss_pred             CEEEEEEEeCCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeEe
Q 033022           10 PNVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTK   86 (129)
Q Consensus        10 ~~~~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   86 (129)
                      ..++++|.+.+++|||++|..   ++|.|+||||++|+| |+++|+.||++||||+.+... . ....+.|.|++.... 
T Consensus       241 ~~~~~vi~~~~g~vLL~rR~~~g~~~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~-~-~l~~~~h~~~h~~~~-  316 (369)
T 3fsp_A          241 PLAVAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQVELT-E-PIVSFEHAFSHLVWQ-  316 (369)
T ss_dssp             EEEEEEEECSSSEEEEEECCSSSTTTTCEECCEEECSSS-CTHHHHHHHHTTSSSCCEEEC-C-CCCEEEEECSSEEEE-
T ss_pred             EEEEEEEEeCCCEEEEEECCCCCCcCCcccCCCcccCCC-CcHHHHHHHHHHHhCCceeee-c-ccccEEEEcceEEEE-
Confidence            345566777889999999985   458999999999999 999999999999999996322 1 222345666554322 


Q ss_pred             EEEEecc-----eeeeeeeeEEecccccC
Q 033022           87 VNRLWGG-----EWHGQAQKWYASLLLLV  110 (129)
Q Consensus        87 ~~~~~~~-----~~~~~~~~W~~~~~~~~  110 (129)
                      + .++..     ..+.++.+|++++.+..
T Consensus       317 ~-~~~~~~~~~~~~e~~~~~Wv~~~el~~  344 (369)
T 3fsp_A          317 L-TVFPGRLVHGGPVEEPYRLAPEDELKA  344 (369)
T ss_dssp             E-EEEEEEECCSSCCCTTEEEEEGGGGGG
T ss_pred             E-EEEEEEEcCCCCCccccEEeeHHHhhh
Confidence            2 22222     22356789999887654

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.63  E-value=2e-16  Score=112.09  Aligned_cols=46  Identities=24%  Similarity=0.310  Sum_probs=41.4

Q ss_pred             eCCCcEEEEEEcCCCCcEEcCeeecCCCC-CHHHHHHHHHHHHhCCcee
Q 033022           18 NSDSQIFVASRLNVPGAWQMPQGGIEDGE-DPKLAAMRELREETGIVSA   65 (129)
Q Consensus        18 ~~~~~vLl~~r~~~~g~w~~PgG~ve~gE-s~~~aa~RE~~EEtGl~~~   65 (129)
                      +.++++||++|  ++|.|++|||++|+|| |+++||+||++||||+.+.
T Consensus        53 ~~~~~vLl~~r--~~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~   99 (212)
T 1u20_A           53 PIRRVLLMMMR--FDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALA   99 (212)
T ss_dssp             ECCEEEEEEEE--TTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGG
T ss_pred             ecCCEEEEEEe--CCCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCcc
Confidence            45678999988  3699999999999999 9999999999999999964

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.61  E-value=4.1e-15  Score=106.96  Aligned_cols=57  Identities=25%  Similarity=0.387  Sum_probs=50.8

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcC----CCCcEEcCe-eecCCC------CC---HHHHHHHHHHHHhCCce
Q 033022            8 YRPNVGVCLINSDSQIFVASRLN----VPGAWQMPQ-GGIEDG------ED---PKLAAMRELREETGIVS   64 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~----~~g~w~~Pg-G~ve~g------Es---~~~aa~RE~~EEtGl~~   64 (129)
                      +++++++++++.++++||++|+.    +||.|++|+ |++++|      |+   +.+||+||++||||+.+
T Consensus        58 ~h~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~  128 (235)
T 2dho_A           58 LHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPL  128 (235)
T ss_dssp             CEEEEEEEEECTTCCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCG
T ss_pred             eEEEEEEEEEcCCCEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCc
Confidence            67788889999889999999974    579999995 999999      88   59999999999999985

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.60  E-value=3.8e-15  Score=107.82  Aligned_cols=57  Identities=26%  Similarity=0.381  Sum_probs=51.0

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcC----CCCcEEcCe-eecCCC------CCH---HHHHHHHHHHHhCCce
Q 033022            8 YRPNVGVCLINSDSQIFVASRLN----VPGAWQMPQ-GGIEDG------EDP---KLAAMRELREETGIVS   64 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~----~~g~w~~Pg-G~ve~g------Es~---~~aa~RE~~EEtGl~~   64 (129)
                      +++++++++++.++++||+||+.    +||.|++|+ |++++|      |++   .+||+||++||||+.+
T Consensus        69 ~h~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~  139 (246)
T 2pny_A           69 LHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPG  139 (246)
T ss_dssp             CEEEEEEEEECTTCCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCT
T ss_pred             EEEEEEEEEEeCCCEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCc
Confidence            67788888999889999999973    579999996 999999      887   9999999999999984

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.51  E-value=1.1e-14  Score=104.51  Aligned_cols=59  Identities=24%  Similarity=0.449  Sum_probs=49.9

Q ss_pred             CCCcCEEEEEEEeCC--C--cEEEEEEcC----CCCcEEcCeeecCCCCC--------------------HHHHHHHHHH
Q 033022            6 SGYRPNVGVCLINSD--S--QIFVASRLN----VPGAWQMPQGGIEDGED--------------------PKLAAMRELR   57 (129)
Q Consensus         6 ~~~~~~~~~~i~~~~--~--~vLl~~r~~----~~g~w~~PgG~ve~gEs--------------------~~~aa~RE~~   57 (129)
                      ...|.++++++++.+  +  +|||++|..    .+|.|.||||+|+++|+                    +..||+||++
T Consensus         5 ~~~r~aA~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~   84 (232)
T 3qsj_A            5 TDIRKAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETA   84 (232)
T ss_dssp             CCEEEEEEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHH
T ss_pred             CCCcceEEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHH
Confidence            347788888777643  3  899999985    36899999999999997                    5899999999


Q ss_pred             HHhCCce
Q 033022           58 EETGIVS   64 (129)
Q Consensus        58 EEtGl~~   64 (129)
                      ||||+.+
T Consensus        85 EE~Gl~l   91 (232)
T 3qsj_A           85 EEIGWLL   91 (232)
T ss_dssp             HHHSCCC
T ss_pred             HHhCcee
Confidence            9999985

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.49  E-value=2e-13  Score=101.31  Aligned_cols=57  Identities=18%  Similarity=0.238  Sum_probs=50.9

Q ss_pred             CcCEEEEEEEeCCC---cEEEEEEcC----CCCcE-EcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022            8 YRPNVGVCLINSDS---QIFVASRLN----VPGAW-QMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus         8 ~~~~~~~~i~~~~~---~vLl~~r~~----~~g~w-~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      .+.+|-+.+++.++   ++||.||+.    +||.| .+|+|++++|||+.+||+||+.||+|+..
T Consensus       117 ~~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~  181 (300)
T 3dup_A          117 RAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPE  181 (300)
T ss_dssp             CEEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCH
T ss_pred             EEEEEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCCh
Confidence            56678888888776   899999984    78999 58999999999999999999999999985

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.46  E-value=7.7e-14  Score=103.20  Aligned_cols=41  Identities=29%  Similarity=0.462  Sum_probs=38.6

Q ss_pred             cEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCc
Q 033022           22 QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV   63 (129)
Q Consensus        22 ~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~   63 (129)
                      ++||++|.. .|.|.+|||+|++|||+.+||+||++||||+.
T Consensus       140 ~vLl~~r~~-~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~  180 (292)
T 1q33_A          140 QFVAIKRKD-CGEWAIPGGMVDPGEKISATLKREFGEEALNS  180 (292)
T ss_dssp             EEEEEECTT-TCSEECCCEECCTTCCHHHHHHHHHHHHHSCG
T ss_pred             EEEEEEecC-CCcEeCCCcccCCCCCHHHHHHHHHHHHhCCc
Confidence            699999976 58999999999999999999999999999997

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.40  E-value=1.9e-13  Score=97.20  Aligned_cols=42  Identities=31%  Similarity=0.446  Sum_probs=37.2

Q ss_pred             cEEEEEEcCCCCcEEcCeeecCCCC-CHHHHHHHHHHHHhCCcee
Q 033022           22 QIFVASRLNVPGAWQMPQGGIEDGE-DPKLAAMRELREETGIVSA   65 (129)
Q Consensus        22 ~vLl~~r~~~~g~w~~PgG~ve~gE-s~~~aa~RE~~EEtGl~~~   65 (129)
                      ++||+.|.  +|.|++|||++|+|| |+++||+||++||||+.+.
T Consensus        66 ~~ll~~r~--~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~  108 (217)
T 2xsq_A           66 AILMQMRF--DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAA  108 (217)
T ss_dssp             EEEEEEET--TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGG
T ss_pred             cEEEEEcc--CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCc
Confidence            46666665  589999999999999 9999999999999999864

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=99.34  E-value=4.7e-12  Score=88.71  Aligned_cols=54  Identities=24%  Similarity=0.348  Sum_probs=44.8

Q ss_pred             CCcCEEEEEEE-eCCC--cEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCC
Q 033022            7 GYRPNVGVCLI-NSDS--QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI   62 (129)
Q Consensus         7 ~~~~~~~~~i~-~~~~--~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl   62 (129)
                      |.|+.|.++++ +..+  +|||+|+.  .+.|.+|||++|+||+.++|++||+.||+|.
T Consensus        56 g~R~sV~avil~~~~~~phVLLlq~~--~~~f~LPGGkle~gE~~~eaL~REL~EELg~  112 (208)
T 3bho_A           56 GMRRTVEGVLIVHEHRLPHVLLLQLG--TTFFKLPGGELNPGEDEVEGLKRLMTEILGR  112 (208)
T ss_dssp             CSEEEEEEEEEEEETTEEEEEEEEEE--TTEEECSEEECCTTCCHHHHHHHHHHHHHCC
T ss_pred             CCceEEEEEEEEcCCCCcEEEEEEcC--CCcEECCCcccCCCCCHHHHHHHHHHHHhCC
Confidence            45666666554 4444  79999985  4699999999999999999999999999995

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=99.33  E-value=7.2e-13  Score=92.16  Aligned_cols=55  Identities=16%  Similarity=0.240  Sum_probs=44.3

Q ss_pred             CCCcCEEEEEEEeCC-----C------cEEEEEEcCCCCcEEcCeeecCCCC-CHHHHHHHHHHHHhCC
Q 033022            6 SGYRPNVGVCLINSD-----S------QIFVASRLNVPGAWQMPQGGIEDGE-DPKLAAMRELREETGI   62 (129)
Q Consensus         6 ~~~~~~~~~~i~~~~-----~------~vLl~~r~~~~g~w~~PgG~ve~gE-s~~~aa~RE~~EEtGl   62 (129)
                      +++|.++-+++.-.+     +      .+|++.|.  +|.|+||||+||+|| |+++|+.||+.||+|+
T Consensus        18 ~~~~hach~mlya~~~~~lfg~~p~r~~iLmQ~R~--~G~weFPGGkVe~gE~t~e~aL~REl~EElg~   84 (214)
T 3kvh_A           18 PGWSHSCHAMLYAANPGQLFGRIPMRFSVLMQMRF--DGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGC   84 (214)
T ss_dssp             TTCEEEEEEEEEEEEEEEETTTEEEEEEEEEEEET--TSCEECSEEEECTTTCCHHHHHHHSCCSCC--
T ss_pred             cCccEeeEEEEEcCCccccccccchhheEEEeeee--CCEEeCCCccCCCCCCCHHHHHHHHHHHhhCC
Confidence            468899999887554     2      25556654  599999999999999 9999999999999997

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=99.21  E-value=2.7e-11  Score=90.66  Aligned_cols=89  Identities=15%  Similarity=0.215  Sum_probs=53.9

Q ss_pred             CEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHh-CCceeeEEeecCceEEeecCCCeeEe--
Q 033022           10 PNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET-GIVSAEIIAEVPNWLTYDFPPAVKTK--   86 (129)
Q Consensus        10 ~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEt-Gl~~~~~~~~~~~~~~~~~~~~~~~~--   86 (129)
                      ..|+++ +..+++|||+  .+ .| |.+|||.++.++  .++|+||++||| |+++. +...+.   .|+.+.....+  
T Consensus       184 ~~vgai-i~~~g~vLL~--~~-~G-W~LPG~~~~~~~--~~~a~RE~~EEttGl~v~-~~~L~~---v~~~~~~~~~~i~  252 (321)
T 3rh7_A          184 IRLGAV-LEQQGAVFLA--GN-ET-LSLPNCTVEGGD--PARTLAAYLEQLTGLNVT-IGFLYS---VYEDKSDGRQNIV  252 (321)
T ss_dssp             EEEEEE-EESSSCEEEB--CS-SE-EBCCEEEESSSC--HHHHHHHHHHHHHSSCEE-EEEEEE---EEECTTTCCEEEE
T ss_pred             ceEEEE-EEECCEEEEe--eC-CC-ccCCcccCCCCh--hHHHHHHHHHHhcCCEEe-eceEEE---EEEcCCCceEEEE
Confidence            344444 4556899999  32 57 999988665444  469999999997 99963 222221   23333332222  


Q ss_pred             -EEEEecceeeeeeeeEEecccccCC
Q 033022           87 -VNRLWGGEWHGQAQKWYASLLLLVP  111 (129)
Q Consensus        87 -~~~~~~~~~~~~~~~W~~~~~~~~~  111 (129)
                       .+....+.  ..+.+||.++.++..
T Consensus       253 f~~~~~~g~--~~e~~~f~~~elp~~  276 (321)
T 3rh7_A          253 YHALASDGA--PRQGRFLRPAELAAA  276 (321)
T ss_dssp             EEEEECSSC--CSSSEEECHHHHTTC
T ss_pred             EEEEeCCCC--eeeeEEECHHHCCCc
Confidence             22222222  367899999887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	129
d1jkna_	165	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	4e-25
d2a6ta2	151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	5e-11
d1xsba_	153	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	8e-11
d1irya_	156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	4e-10
d2fvva1	135	d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat	5e-10
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	6e-10
d1ryaa_	160	d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD	4e-09
d2b0va1	146	d.113.1.1 (A:4-149) Hypothetical protein NE0184 {N	1e-08
d1vcda1	126	d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus t	2e-08
d1u20a1	196	d.113.1.1 (A:14-209) U8 snorna-binding protein x29	2e-08
d2azwa1	147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	2e-08
d1k2ea_	152	d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa	3e-08
d1q33a_	292	d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyr	2e-07
d1vk6a2	131	d.113.1.4 (A:126-256) NADH pyrophosphatase {Escher	1e-05
d2fmla2	202	d.113.1.6 (A:3-204) Hypothetical protein EF2700, N	3e-05
d1hzta_	153	d.113.1.2 (A:) Isopentenyl diphosphate isomerase {	6e-05
d1nqza_	187	d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinoco	2e-04
d2b06a1	155	d.113.1.1 (A:1-155) Hypothetical protein SP1235 (s	4e-04
d1v8ya_	158	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus	0.001
d1g0sa_	209	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escheri	0.001
d1viua_	189	d.113.1.1 (A:) ADP-ribose pyrophosphatase homologu	0.001
d1ktga_	137	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	0.002
d2o5fa1	162	d.113.1.2 (A:7-168) Hypothetical protein DR0079 {D	0.003

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]} Length = 165

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

 Score = 91.4 bits (226), Expect = 4e-25
 Identities = 71/104 (68%), Positives = 87/104 (83%)

Query: 1   MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
           MD  P GYR NVG+CL+N+D +IF ASRL++P AWQMPQGGI++GEDP+ AA+RELREET
Sbjct: 6   MDSPPEGYRRNVGICLMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREET 65

Query: 61  GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYA 104
           G+ SAE+IAEVP WLTYDFPP V+ K+N  WG +W GQAQKW+ 
Sbjct: 66  GVTSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFL 109

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 54.4 bits (130), Expect = 5e-11
 Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 1/76 (1%)

Query: 10 PNVGVCLINSD-SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII 68
          P  G  +++    Q  +         W  P+G I+  E     A+RE+ EETG   +  I
Sbjct: 3  PVRGAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRI 62

Query: 69 AEVPNWLTYDFPPAVK 84
                        V+
Sbjct: 63 NPNEFIDMTIRGQNVR 78

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 8e-11
 Identities = 20/98 (20%), Positives = 37/98 (37%)

Query: 8   YRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 67
           +R  +   + N+  +  +    +    W  P+G +E GED    A+R  +EE GI + ++
Sbjct: 16  FRRCLIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQL 75

Query: 68  IAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYAS 105
                     ++    K K    W  E      +   S
Sbjct: 76  TIIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRLS 113

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (124), Expect = 4e-10
 Identities = 15/86 (17%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 12 VGVCLINSDSQIFVASRLNVPGA--WQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIA 69
            + L+    ++ +  +    GA  W    G +++GE  +  A REL+EE+G+    +  
Sbjct: 7  YTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDAL-- 64

Query: 70 EVPNWLTYDFPPAVKTKVNRLWGGEW 95
               + ++F    +     ++  + 
Sbjct: 65 HKVGQIVFEFVGEPELMDVHVFCTDS 90

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 5e-10
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 7  GYRPNVGVCLINSDSQIF--VASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
          GY+         S+S+    + S    P  W +P GG+E  E+P +AA+RE+ EE G+
Sbjct: 9  GYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGV 66

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 51.7 bits (123), Expect = 6e-10
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 6/57 (10%)

Query: 12 VGVCLINSDSQIFVASRLNVP------GAWQMPQGGIEDGEDPKLAAMRELREETGI 62
           GV L+N    I +     +P      G W +P G +EDGE+P+ AA+RE  EETG+
Sbjct: 15 AGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGL 71

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]} Length = 160

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

 Score = 49.5 bits (117), Expect = 4e-09
 Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 2/82 (2%)

Query: 12  VGVCLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIA 69
           +   + NS  +  +  R N P  G W +P G ++  E  + A  R    E G+       
Sbjct: 21  LDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAG 80

Query: 70  EVPNWLTYDFPPAVKTKVNRLW 91
           +      + +            
Sbjct: 81  QFYGVWQHFYDDNFSGTDFTTH 102

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]} Length = 146

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

 Score = 47.9 bits (113), Expect = 1e-08
 Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 5/99 (5%)

Query: 9   RPNVGV-CLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65
           +PNV V  +I  D +  +   +          P G +E GE    A  RE+ EETG    
Sbjct: 1   KPNVTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHS-- 58

Query: 66  EIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYA 104
            +   +     +       T +   + G+          
Sbjct: 59  FLPEVLTGIYHWTCASNGTTYLRFTFSGQVVSFDPDRKL 97

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

 Score = 47.3 bits (112), Expect = 2e-08
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 12 VGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETG 61
           G  + N+  ++ +       G W  P+G  E GE  + AA+RE+ EETG
Sbjct: 5  AGGVVFNAKREVLLLRDRM--GFWVFPKGHPEPGESLEEAAVREVWEETG 52

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 196

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 48.1 bits (114), Expect = 2e-08
 Identities = 14/91 (15%), Positives = 24/91 (26%), Gaps = 11/91 (12%)

Query: 6   SGYRPNVGVCLINSDSQIFVAS---------RLNVPGAWQMPQGGIEDGEDPKLAAM-RE 55
            GY+      L                     +   G    P G ++  +      + RE
Sbjct: 17  EGYKHACHALLHAPSQAKLFDRVPIRRVLLMMMRFDGRLGFPGGFVDTRDISLEEGLKRE 76

Query: 56  LREETGI-VSAEIIAEVPNWLTYDFPPAVKT 85
           L EE G  ++   + E     +       K 
Sbjct: 77  LEEELGPALATVEVTEDDYRSSQVREHPQKC 107

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

 Score = 47.5 bits (112), Expect = 2e-08
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 9   RPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETG--IVSAE 66
           R    + +   ++   V  +    GA+ +P G IE  E  + A  RE+ EE G  +    
Sbjct: 17  RYAAYIIVSKPENNTMVLVQAP-NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGC 75

Query: 67  IIAEVPNWLTYDFPPAVKTKVNRLWGGEW 95
            + E   +   +            +    
Sbjct: 76  YLGEADEYFYSNHRQTAYYNPGYFYVANT 104

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 47.2 bits (111), Expect = 3e-08
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 2/100 (2%)

Query: 12  VGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEV 71
           V   ++  + ++ +       G +  P G +E  E P  A  RE  EETGI   E I   
Sbjct: 3   VTSGVLVENGKVLLVKHKR-LGVYIYPGGHVEHNETPIEAVKREFEEETGI-VVEPIGFT 60

Query: 72  PNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYASLLLLVP 111
              +  +        V      ++  +    +  + L+  
Sbjct: 61  YGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKR 100

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 2e-07
 Identities = 11/76 (14%), Positives = 20/76 (26%), Gaps = 2/76 (2%)

Query: 32  PGAWQMPQGGIEDGEDPKLAAMRELREETGI--VSAEIIAEVPNWLTYDFPPAVKTKVNR 89
            G W +P G ++ GE       RE  EE                   +         + +
Sbjct: 149 CGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYK 208

Query: 90  LWGGEWHGQAQKWYAS 105
            +  +       W  +
Sbjct: 209 GYVDDPRNTDNAWMET 224

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 131

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

 Score = 39.7 bits (92), Expect = 1e-05
 Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 7/85 (8%)

Query: 14 VCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVP 72
          +  I  D  I +A       G   +  G +E GE  + A  RE+ EE+GI          
Sbjct: 7  IVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIK------VKN 60

Query: 73 NWLTYDFPPAVKTKVNRLWGGEWHG 97
                 P      +   +  E+  
Sbjct: 61 LRYVTSQPWPFPQSLMTAFMAEYDS 85

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

 Score = 39.4 bits (91), Expect = 3e-05
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 9/63 (14%)

Query: 9  RPNVGV-CLI------NSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREE 59
          +P++ V  ++          ++ +  R   P   +W +P G +   E  + + +RE +EE
Sbjct: 35 KPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEE 94

Query: 60 TGI 62
          TG+
Sbjct: 95 TGV 97

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (88), Expect = 6e-05
 Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 12 VGVCLINSDSQIFVASR-----LNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
              L N+  Q+ V  R                G  + GE  + A +R  R E G+
Sbjct: 5  FSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGV 60

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]} Length = 187

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 36.7 bits (84), Expect = 2e-04
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 32  PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIA-EVPNWLTYDFPPAVKTKVNRL 90
            G    P G ++ GE P  AA+RE +EE  +  A +      + +       V   + R+
Sbjct: 60  KGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPVGFHVTPVLGRI 119

Query: 91  WGGEWHGQAQKWYASLLLLVPL 112
                         + ++   L
Sbjct: 120 APEALDTLRVTPEVAQIITPTL 141

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]} Length = 155

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 35.9 bits (82), Expect = 4e-04
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 7/90 (7%)

Query: 12 VGVCLI--NSDSQIFVASR---LNVPGAWQMPQGGIEDGEDPKLAAMRELREETG--IVS 64
            +CLI      ++ +  R    N    +  P G +E+ E    + +RE+ EETG  I +
Sbjct: 10 TNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQN 69

Query: 65 AEIIAEVPNWLTYDFPPAVKTKVNRLWGGE 94
           +++      L       V       + G 
Sbjct: 70 PQLVGIKNWPLDTGGRYIVICYKATEFSGT 99

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

 Score = 34.7 bits (79), Expect = 0.001
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 3/107 (2%)

Query: 8   YRPNVGVCLINSDSQIFVASRLNVPGA--WQMPQGGIEDGEDPKLAAMRELREETGIVSA 65
           ++P V V  +     +FV       G    ++P G IE GEDP  AA REL E+TG +S 
Sbjct: 23  HKPAVAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTG-LSG 81

Query: 66  EIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYASLLLLVPL 112
           ++      +++  F              E      +  A  ++ +  
Sbjct: 82  DLTYLFSYFVSPGFTDEKTHVFLAENLKEVEAHPDEDEAIEVVWMRP 128

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 209

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

 Score = 34.7 bits (79), Expect = 0.001
 Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 9/77 (11%)

Query: 12  VGVCLINSDSQIFVASRLNVPGA---------WQMPQGGIEDGEDPKLAAMRELREETGI 62
             +   +      V        A          +M  G IE+GE  +  A RE  EE G+
Sbjct: 60  AVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGL 119

Query: 63  VSAEIIAEVPNWLTYDF 79
           +       +    +   
Sbjct: 120 IVKRTKPVLSFLASPGG 136

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]} Length = 189

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

 Score = 34.7 bits (79), Expect = 0.001
 Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 9/77 (11%)

Query: 12  VGVCLINSDSQIFVASRLNVPGAW---------QMPQGGIEDGEDPKLAAMRELREETGI 62
             + L N+  +  V  R      W              G+ D ++P++   +E  EETG 
Sbjct: 46  ATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEPEVCIRKEAIEETGY 105

Query: 63  VSAEIIAEVPNWLTYDF 79
              E+      +++   
Sbjct: 106 EVGEVRKLFELYMSPGG 122

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]} Length = 137

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 33.7 bits (76), Expect = 0.002
 Identities = 18/86 (20%), Positives = 32/86 (37%)

Query: 17  INSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLT 76
           +    +  +      P  W  P+G ++ GED   AA+RE +EE  I   ++        T
Sbjct: 13  LAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHET 72

Query: 77  YDFPPAVKTKVNRLWGGEWHGQAQKW 102
             +    K K  + W  + +      
Sbjct: 73  LFYEAKGKPKSVKYWLAKLNNPDDVQ 98

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]} Length = 162

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

 Score = 33.6 bits (76), Expect = 0.003
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 12 VGVCLINSDSQIFVASR-----LNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
          V   L NS  Q+++  R     L          G ++ GE  + A  RE REE  +   +
Sbjct: 31 VNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNV-EID 89

Query: 67 IIAEVPNW 74
           ++  P  
Sbjct: 90 ALSWRPLA 97

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	129
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.94
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.89
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.88
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.85
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.85
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.85
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.85
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.85
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.84
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.84
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.84
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.83
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.83
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.83
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.82
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.82
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.82
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.81
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.79
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.78
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.74
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.72
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.7
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.68
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.66
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.62
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.56
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.35
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.29
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	99.19

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.94  E-value=4.1e-28  Score=164.66  Aligned_cols=67  Identities=69%  Similarity=1.243  Sum_probs=62.5

Q ss_pred             CCCCCCCCcCEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeE
Q 033022            1 MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI   67 (129)
Q Consensus         1 m~~~~~~~~~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~   67 (129)
                      |+..|++||++|+++|+|.+++|||++|.+.+|.|++|||+||+|||+++||+||++||||+++..+
T Consensus         6 ~~~~~~~yR~~Vg~vI~n~~~~vLL~kR~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGl~~~~~   72 (165)
T d1jkna_           6 MDSPPEGYRRNVGICLMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEV   72 (165)
T ss_dssp             CSSCCSSEEEEEEEEEECTTSCEEEEEESSSTTCEECCEECCCTTCCHHHHHHHHHHHHTCCCSEEE
T ss_pred             cCCCCCCccccEEEEEEeCCCEEEEEEEcCCCCcccCccceEcCCCChhHHHHHHHHHhhccccccc
Confidence            7778889999999999999999999999988899999999999999999999999999999996543

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.89  E-value=2.8e-23  Score=134.80  Aligned_cols=107  Identities=21%  Similarity=0.330  Sum_probs=73.6

Q ss_pred             cCEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeEeEE
Q 033022            9 RPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN   88 (129)
Q Consensus         9 ~~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (129)
                      +.+|+++|++.++++||++|..  |.|.+|||++++|||+.+||+||++||||+++..+. .. ....|.++....... 
T Consensus         2 ~v~agavv~~~~~~vLl~~~~~--g~w~~PgG~ve~gEt~~~aa~RE~~EEtGi~~~~~~-~~-~~~~~~~~~~~~~~~-   76 (126)
T d1vcda1           2 ELGAGGVVFNAKREVLLLRDRM--GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLL-PL-YPTRYVNPKGVEREV-   76 (126)
T ss_dssp             EEEEEEEEECTTSCEEEEECTT--SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEE-EE-EEEEEECTTSCEEEE-
T ss_pred             EEEEEEEEEECCCEEEEEEcCC--CCEECCccccCCCCCHHHHHHHHHHHHcCCeeEEEE-EE-eeeeeccCCCeEEEE-
Confidence            4689999999999999998764  899999999999999999999999999999964322 11 122345444433222 


Q ss_pred             EEecceee--------eeeeeEEecccccCCCCccccccc
Q 033022           89 RLWGGEWH--------GQAQKWYASLLLLVPLTLSTHTHF  120 (129)
Q Consensus        89 ~~~~~~~~--------~~~~~W~~~~~~~~~~~~~~~~~~  120 (129)
                      +++.....        ..+.+|++++.+...+.++.+..+
T Consensus        77 ~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~i  116 (126)
T d1vcda1          77 HWFLMRGEGAPRLEEGMTGAGWFSPEEARALLAFPEDLGL  116 (126)
T ss_dssp             EEEEEEEESCCCCCTTCCEEEEECHHHHHHHBCSHHHHHH
T ss_pred             EEEEEEEcCCCCCCccceEEEEEEHHHHhhccCChHHHHH
Confidence            22222221        356788888776655554444433

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3e-22  Score=134.25  Aligned_cols=111  Identities=14%  Similarity=0.240  Sum_probs=73.9

Q ss_pred             cCEEEEEEEeCCCcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeEe
Q 033022            9 RPNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTK   86 (129)
Q Consensus         9 ~~~~~~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   86 (129)
                      .+.++++++..+++|||++|.+.  .|.|.+|||++++|||+.+||+||++||||+++..+...  ....+.++......
T Consensus         4 ~r~~~~v~i~~~~~vLL~~r~~~~~~g~W~lPGG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~--~~~~~~~~~~~~~~   81 (156)
T d1irya_           4 SRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKV--GQIVFEFVGEPELM   81 (156)
T ss_dssp             CEEEEEECEECSSEEEEEEESSSSSBTCEECBCCBCCTTCCHHHHHHHHHHHHHSCCBSCCCEE--EEEEEEETTCSCEE
T ss_pred             cEEEEEEEEEECCEEEEEEecCCCCCCEEECcEeEecCCCCHHHHHHHHHHHHHCCcccceEEE--EEEEEEcCCCCEEE
Confidence            34667777777889999999863  389999999999999999999999999999986422111  12234444433332


Q ss_pred             EEEEe-cceee-------eeeeeEEecccccCCCCcccccccc
Q 033022           87 VNRLW-GGEWH-------GQAQKWYASLLLLVPLTLSTHTHFM  121 (129)
Q Consensus        87 ~~~~~-~~~~~-------~~~~~W~~~~~~~~~~~~~~~~~~~  121 (129)
                      ...++ .....       ..+.+||+++.++.....+.+..|+
T Consensus        82 ~~~~~~~~~~~~~~~~~ee~~~~W~~~~~l~~~~~~~~d~~~l  124 (156)
T d1irya_          82 DVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDMWPDDSYWF  124 (156)
T ss_dssp             EEEEECCCCBCSCCCCCSSEEEEEEETTCCCSTTTCSSHHHHH
T ss_pred             EEEEEEEEeecCcccCCchhheEEeEHHHCCcCCCCccHHHHH
Confidence            22332 22222       2456899999887654444444443

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.85  E-value=1.6e-21  Score=129.93  Aligned_cols=55  Identities=25%  Similarity=0.464  Sum_probs=49.7

Q ss_pred             EEEEEEEeCC-CcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022           11 NVGVCLINSD-SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus        11 ~~~~~i~~~~-~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      .++++|++.+ +++||+|+.+.+|.|.+|||++++|||+.+||+||++||||+++.
T Consensus         4 v~Gaii~~~~~~kvLLvk~~~~~~~W~lPgG~ie~gEs~~~aa~RE~~EEtGi~~~   59 (151)
T d2a6ta2           4 VRGAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCS   59 (151)
T ss_dssp             EEEEEEBCSSSSEEEEEEESSTTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCT
T ss_pred             EEEEEEEECCCCEEEEEEEeCCCCCEECCcccccCCCCHHHHHHHHHHHHhCCCce
Confidence            6688888876 689999997667899999999999999999999999999999863

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.85  E-value=3.8e-21  Score=126.84  Aligned_cols=96  Identities=19%  Similarity=0.204  Sum_probs=63.9

Q ss_pred             EEEEEEEeCCCcEEEEEEcCCC--CcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeEeEE
Q 033022           11 NVGVCLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN   88 (129)
Q Consensus        11 ~~~~~i~~~~~~vLl~~r~~~~--g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (129)
                      +|+++ +..++++||++|.+.+  |.|.+|||++++|||+.+||+||++||||+++... ... ....+.++........
T Consensus         5 ~va~i-i~~~~k~Llv~r~~~~~~~~w~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~-~~~-~~~~~~~~~~~~~~~~   81 (146)
T d2b0va1           5 TVAAV-IEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPE-VLT-GIYHWTCASNGTTYLR   81 (146)
T ss_dssp             EEEEE-CEETTEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEE-EEE-EEEEEEETTTTEEEEE
T ss_pred             EEEEE-EEeCCEEEEEEEecCCCCCEEECCeeeECCCCCHHHHHHHHHHHhheeecccc-eEE-EEEEEecCCCCeEEEE
Confidence            44444 4556899999998644  68999999999999999999999999999996322 111 2233444443333332


Q ss_pred             EEeccee-----------eeeeeeEEeccccc
Q 033022           89 RLWGGEW-----------HGQAQKWYASLLLL  109 (129)
Q Consensus        89 ~~~~~~~-----------~~~~~~W~~~~~~~  109 (129)
                      .++....           +..+.+|++++.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~  113 (146)
T d2b0va1          82 FTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIR  113 (146)
T ss_dssp             EEEEEEEEEECTTSCCCTTEEEEEEEEHHHHH
T ss_pred             EEEEEEeecCCCCCCCCcceeEEEEeeHHHHh
Confidence            3232221           13678999987653

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.85  E-value=4.2e-21  Score=128.24  Aligned_cols=100  Identities=26%  Similarity=0.390  Sum_probs=69.8

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcCC------CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCC
Q 033022            8 YRPNVGVCLINSDSQIFVASRLNV------PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPP   81 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~~------~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~   81 (129)
                      .++++++++++.++++||++|+..      +|.|++|||++++|||+.+||+||++||||+++..+ ..+ ....+.++.
T Consensus        11 ~~~a~~~vi~~~~g~iLl~~r~~~~~~~~~~g~W~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~-~~i-~~~~~~~~~   88 (158)
T d1sjya_          11 ELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPV-KFL-GAYLGRFPD   88 (158)
T ss_dssp             CEEEEEEEEBCTTCCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEE-EEE-EEEEEECTT
T ss_pred             ceeEEEEEEEeCCCEEEEEEEecCCCCCCCCCcEECCceecCCCCCHHHHHHHHHHHHhCccceee-EEE-EEEEEECCC
Confidence            345788888898999999999742      478999999999999999999999999999996432 222 233455665


Q ss_pred             CeeEeEEEEec----ce-------eeeeeeeEEeccccc
Q 033022           82 AVKTKVNRLWG----GE-------WHGQAQKWYASLLLL  109 (129)
Q Consensus        82 ~~~~~~~~~~~----~~-------~~~~~~~W~~~~~~~  109 (129)
                      ........++.    +.       -+..+.+|++++.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~  127 (158)
T d1sjya_          89 GVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFA  127 (158)
T ss_dssp             SCEEEEEEEEEEECSSCCCCCCCCSSEEEEEEECHHHHH
T ss_pred             CCEEEEEEEEEEEcCCcccCCCCCcceEEEEEEEHHHHh
Confidence            54433222221    11       123567899877654

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.85  E-value=4e-22  Score=130.12  Aligned_cols=56  Identities=27%  Similarity=0.494  Sum_probs=48.2

Q ss_pred             CEEEEEEEeC-C--CcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022           10 PNVGVCLINS-D--SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus        10 ~~~~~~i~~~-~--~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      +++++++++. +  .++||++|+..+|.|.+|||++++|||+.+||+||++||||+++.
T Consensus         3 raag~vv~~~~~~~~~~Ll~~r~~~~g~W~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~   61 (137)
T d1ktga_           3 KAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKE   61 (137)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEESSTTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGG
T ss_pred             EEEEEEEEEEcCCCEEEEEEEEcCCCCcEeCcccccccCCCHHHHHHHHHHHHhCCcce
Confidence            5677777643 2  378999998778999999999999999999999999999999963

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3e-21  Score=126.18  Aligned_cols=60  Identities=32%  Similarity=0.670  Sum_probs=52.0

Q ss_pred             CCCcCEEEEEEEeCC--CcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022            6 SGYRPNVGVCLINSD--SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         6 ~~~~~~~~~~i~~~~--~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      .++|..+++++++.+  +++||+++.+.+|.|.+|||++++|||+.+||+||++||||+.+.
T Consensus         8 ~~~r~~a~~vv~~~~~~~~~lL~~~~~~~~~W~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   69 (135)
T d2fvva1           8 DGYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGT   69 (135)
T ss_dssp             TSCEEEEEEEEESSTTCCEEEEEECSSCTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEE
T ss_pred             CCCceEEEEEEEEecCCCEEEEEEEeCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcce
Confidence            468888888888644  467888877778999999999999999999999999999999853

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.84  E-value=6.1e-21  Score=127.53  Aligned_cols=100  Identities=15%  Similarity=0.213  Sum_probs=63.8

Q ss_pred             cCEEEEE-EEe-CCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCe
Q 033022            9 RPNVGVC-LIN-SDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAV   83 (129)
Q Consensus         9 ~~~~~~~-i~~-~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~   83 (129)
                      ...++++ |++ +++++||++|..   ..|.|++|||++++|||+.+||.||++||||+++....  +.....+.+....
T Consensus         7 ~~~~~~~~i~~~~~~~lLl~~R~~~~~~~~~w~~PGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~--~~~~~~~~~~~~~   84 (155)
T d2b06a1           7 TILTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQ--LVGIKNWPLDTGG   84 (155)
T ss_dssp             EEEEEEEEEEETTTTEEEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCE--EEEEEEEECTTSC
T ss_pred             EEEEEEEEEEECCCCEEEEEEECCCCCCCCcEECceeEEcCCCCHHHHHHHHHHHhcCeeEeeeE--EEEEEEeecCCCC
Confidence            3444443 344 456899998874   22679999999999999999999999999999963221  1112234443333


Q ss_pred             eEeEEEEecceee-------eeeeeEEecccccC
Q 033022           84 KTKVNRLWGGEWH-------GQAQKWYASLLLLV  110 (129)
Q Consensus        84 ~~~~~~~~~~~~~-------~~~~~W~~~~~~~~  110 (129)
                      ......+....+.       .++.+||+++.++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~  118 (155)
T d2b06a1          85 RYIVICYKATEFSGTLQSSEEGEVSWVQKDQIPN  118 (155)
T ss_dssp             EEEEEEEEECEEEECCCCBTTBEEEEEEGGGGGG
T ss_pred             eEEEEEEEEEecCCccCCCchheEEEEEHHHhcc
Confidence            3222333222222       47889999887754

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=8.2e-21  Score=127.06  Aligned_cols=58  Identities=28%  Similarity=0.377  Sum_probs=52.7

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcC----CCCcEEc-CeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022            8 YRPNVGVCLINSDSQIFVASRLN----VPGAWQM-PQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~----~~g~w~~-PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      .|++++++|+|.+|++||+||+.    +||.|.+ |||++++|||+.+||+||++||||+++.
T Consensus         1 lHra~~v~i~n~~g~vLl~kRs~~k~~~pg~w~~~pgG~ve~gEt~~eaa~RE~~EE~Gi~~~   63 (153)
T d1hzta_           1 LHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEIT   63 (153)
T ss_dssp             CEECEEEEEECTTCCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBS
T ss_pred             CceEEEEEEEECCCEEEEEEeCCCCCCCCCceecccCceeecCCcHHHHHHHHHHHHcCceee
Confidence            36789999999999999999973    5799987 9999999999999999999999999963

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.3e-20  Score=122.97  Aligned_cols=57  Identities=30%  Similarity=0.387  Sum_probs=47.5

Q ss_pred             cCEEEEEEEeCCCcEEEEEEcCC-CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceee
Q 033022            9 RPNVGVCLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE   66 (129)
Q Consensus         9 ~~~~~~~i~~~~~~vLl~~r~~~-~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~   66 (129)
                      .++|.+++.+ ++++||++|.+. +|.|++|||++|+|||+++||.||++||||+++..
T Consensus         3 ~paViv~i~~-~~~vLL~~~~~~~~g~w~lpGG~ve~GEt~~~aa~REl~EEtG~~~~~   60 (131)
T d1vk6a2           3 APCIIVAIRR-DDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKN   60 (131)
T ss_dssp             EEEEEEEEEE-TTEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEE
T ss_pred             ccEEEEEEEe-CCEEEEEEeccCCCCCEecccCCCcCCCcHHHHHHHHHHHHhCCcccc
Confidence            3566555554 569999998864 47899999999999999999999999999999643

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.83  E-value=7.4e-21  Score=125.63  Aligned_cols=112  Identities=20%  Similarity=0.238  Sum_probs=69.2

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceee--EEeecCceEEeecCCCeeE
Q 033022            8 YRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE--IIAEVPNWLTYDFPPAVKT   85 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~--~~~~~~~~~~~~~~~~~~~   85 (129)
                      .|.+++++|++.++++||+.+.. .|.|.+|||++++|||+.+||+||++||||+++..  .+...... .+........
T Consensus        16 ~r~~~~~vi~~~~~~~lll~~~~-~~~w~lPgG~ie~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~-~~~~~~~~~~   93 (147)
T d2azwa1          16 TRYAAYIIVSKPENNTMVLVQAP-NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEY-FYSNHRQTAY   93 (147)
T ss_dssp             ECCEEEEECEEGGGTEEEEEECT-TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEE-EEETTTTEEE
T ss_pred             CCCeEEEEEEECCCCEEEEEEcC-CCeEECcEeEeCCCCCHHHHHHHHHHhhhceeeeeeeEEEEEEEE-eeeccCCceE
Confidence            36678888888876666555543 47999999999999999999999999999998532  22222111 1111122111


Q ss_pred             -eEEEEeccee---------eeeeeeEEecccccCCCCcccccccc
Q 033022           86 -KVNRLWGGEW---------HGQAQKWYASLLLLVPLTLSTHTHFM  121 (129)
Q Consensus        86 -~~~~~~~~~~---------~~~~~~W~~~~~~~~~~~~~~~~~~~  121 (129)
                       ....++....         +..+.+|++++.+...+....+..++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~l~~~~~r~~l  139 (147)
T d2azwa1          94 YNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVRLLKRGSHRWAV  139 (147)
T ss_dssp             EEEEEEEEEEEEEECSSCC-CCSEEEEECHHHHHHHBSCHHHHHHH
T ss_pred             EEEEEEEEEEeccccCCCCccceEEEEEEHHHHHHHcCChhHHHHH
Confidence             1222222211         23577899887766555554444433

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.83  E-value=1.3e-20  Score=124.54  Aligned_cols=51  Identities=31%  Similarity=0.534  Sum_probs=44.0

Q ss_pred             EEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022           12 VGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus        12 ~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      ++++|++ +++|||++|.+ .|.|++|||++|+|||+.+||+||++||||+++
T Consensus         4 a~~vi~~-d~kvLl~~r~~-~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~   54 (152)
T d1k2ea_           4 TSGVLVE-NGKVLLVKHKR-LGVYIYPGGHVEHNETPIEAVKREFEEETGIVV   54 (152)
T ss_dssp             EEEECEE-TTEEEEEECTT-TCSEECSEEECCTTCCHHHHHHHHHHHHHSEEE
T ss_pred             EEEEEEE-CCEEEEEEEcC-CCeEECCeeEEeCCccHHHHHHHHHHHHHCCce
Confidence            3344444 57999999875 689999999999999999999999999999985

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=2.7e-20  Score=124.62  Aligned_cols=55  Identities=24%  Similarity=0.355  Sum_probs=49.7

Q ss_pred             CEEEEEEEeCCCcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022           10 PNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus        10 ~~~~~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      .+++++|.+.+++|||++|++.  +|.|.+|||++++|||+.+||+||++||||+++
T Consensus        19 ~~v~~vi~~~~~~vLL~kR~~~~~~g~W~lPGG~ve~gEt~~~aa~REl~EEtGl~~   75 (160)
T d1ryaa_          19 VSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRL   75 (160)
T ss_dssp             EEEEEEEECTTSCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCC
T ss_pred             EEEEEEEEeCCCeEEEEEeCCCCCCCcEecccccccCCCcHHHHHHHHHHHHhCceE
Confidence            4677788888899999999863  489999999999999999999999999999985

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=3.5e-21  Score=124.92  Aligned_cols=94  Identities=31%  Similarity=0.506  Sum_probs=65.7

Q ss_pred             EEEEEeCCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeEeEEE
Q 033022           13 GVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNR   89 (129)
Q Consensus        13 ~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (129)
                      +++|++.++++||++|..   .+|.|+||||++|+|||+.+||.||++||||+++...  .......|.++..... ...
T Consensus         8 v~ii~~~~~~vLl~~R~~~~~~~g~W~~PgG~ve~gEs~~~a~~RE~~EE~gl~~~~~--~~~~~~~~~~~~~~~~-~~~   84 (129)
T d1puna_           8 VGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHF--SLFEKLEYEFPDRHIT-LWF   84 (129)
T ss_dssp             EEECBCTTSCEEEBCCCSSCSCTTCCBCSCCSCTTTSCTTHHHHHHHHHTTCSCCCCC--CCSEEEEEECSSEEEE-EEE
T ss_pred             EEEEEECCCEEEEEEecCCCCCCCcEECCcceecCCCchhHHHHHHHHHHhCCccccc--eeeeEEeeccccccee-EEE
Confidence            345677789999999874   4589999999999999999999999999999996432  1223345555543322 222


Q ss_pred             Eeccee-------eeeeeeEEeccccc
Q 033022           90 LWGGEW-------HGQAQKWYASLLLL  109 (129)
Q Consensus        90 ~~~~~~-------~~~~~~W~~~~~~~  109 (129)
                      +.....       ++++.+|++++.+.
T Consensus        85 ~~~~~~~~~~~~~E~~~~~W~~~~el~  111 (129)
T d1puna_          85 WLVERWEGEPWGKEGQPGEWMSLVGLN  111 (129)
T ss_dssp             EECCCCSSCCCTTSSSCCEEECGGGCC
T ss_pred             EEEeeccCcCCCCccceEEEEEHHHcc
Confidence            222211       24678999987664

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=2.2e-20  Score=125.69  Aligned_cols=59  Identities=24%  Similarity=0.318  Sum_probs=52.6

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcC----CCCcEEcC-eeecCCCCCHHHHHHHHHHHHhCCceee
Q 033022            8 YRPNVGVCLINSDSQIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVSAE   66 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~----~~g~w~~P-gG~ve~gEs~~~aa~RE~~EEtGl~~~~   66 (129)
                      .|++|.++++|.++++||++|+.    +||.|++| ||++++|||+++||+||++||||++...
T Consensus        29 ~h~~v~v~v~~~~g~vLl~rR~~~~~~~pg~w~~~~GG~ie~gEs~~~aa~REl~EE~Gi~~~~   92 (161)
T d2fkba1          29 RHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVP   92 (161)
T ss_dssp             CEEEEEEEEECSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCC
T ss_pred             cEeEEEEEEEeCCCCEEEEEecCccccccccccccccccccccCcHHHHHHHHHHHHhCCccce
Confidence            56788889999999999999973    57999887 8999999999999999999999998543

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.1e-20  Score=125.80  Aligned_cols=109  Identities=21%  Similarity=0.269  Sum_probs=71.1

Q ss_pred             CEEEEEEEe---------CCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeE--EeecCceEEee
Q 033022           10 PNVGVCLIN---------SDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI--IAEVPNWLTYD   78 (129)
Q Consensus        10 ~~~~~~i~~---------~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~--~~~~~~~~~~~   78 (129)
                      +++++++++         .+.++||+++.+..+.|.+|||++++|||+.+||+||++||||+++...  .........+.
T Consensus         9 ~~~g~i~f~~~~~~~~~~~~~~~LL~~~~~~~~~W~lPgG~ie~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~   88 (153)
T d1xsba_           9 RACGLIIFRRCLIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRELNYV   88 (153)
T ss_dssp             EEEEEEEEEECSSCSSSSTTEEEEEEEESSTTCCEECCEEECCSSSCHHHHHHHHHHHTTSCCTTTEEECSSCCEEEEEE
T ss_pred             heeEEEEEeccccccccCCCCEEEEEEecCCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCccceeeeeccceeeeccc
Confidence            567888873         4569999999876678999999999999999999999999999996432  22222223333


Q ss_pred             cCCCeeEeEEEEecc---------eeeeeeeeEEecccccCCCCccccc
Q 033022           79 FPPAVKTKVNRLWGG---------EWHGQAQKWYASLLLLVPLTLSTHT  118 (129)
Q Consensus        79 ~~~~~~~~~~~~~~~---------~~~~~~~~W~~~~~~~~~~~~~~~~  118 (129)
                      ..........++...         ..+..+.+||+++.+...+.+....
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~  137 (153)
T d1xsba_          89 ARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQFKEMK  137 (153)
T ss_dssp             SSSCEEEEEEEEEEESCTTCCCCCCTTEEEEEEECHHHHHHHTCSHHHH
T ss_pred             ccCceeEEEEEEEEEeecccccCCCcceeEEEEEEHHHHHHhcCCHHHH
Confidence            333322222211110         0124577888887666554444433

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.81  E-value=3.5e-20  Score=123.17  Aligned_cols=58  Identities=22%  Similarity=0.329  Sum_probs=47.8

Q ss_pred             CcCEEEEEEE--eCC-CcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022            8 YRPNVGVCLI--NSD-SQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA   65 (129)
Q Consensus         8 ~~~~~~~~i~--~~~-~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~   65 (129)
                      ++.+|.++|+  +++ .+|||++|...  .|.|.+|||++++|||+++||+||++||||+++.
T Consensus         9 ~~v~Vd~Vi~~~~~~~~~vLLv~R~~~p~~g~W~lPGG~ie~~Es~~~aa~REl~EEtGl~~~   71 (147)
T d2fb1a2           9 FYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENV   71 (147)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSC
T ss_pred             cceEEEEEEEEEeCCcCEEEEEEccCCCCCCcEeCcEeeecCCCCHHHHHHHHHHHHhCCccc
Confidence            5556666665  333 47999999864  3899999999999999999999999999999864

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.79  E-value=1.2e-19  Score=122.11  Aligned_cols=57  Identities=30%  Similarity=0.379  Sum_probs=49.9

Q ss_pred             CcCEEEEEEEeCCCcEEEEEEcC----CCCcEEcC-eeecCCCCCHHHHHHHHHHHHhCCce
Q 033022            8 YRPNVGVCLINSDSQIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus         8 ~~~~~~~~i~~~~~~vLl~~r~~----~~g~w~~P-gG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      .+++|+++|+|.+|++||.+|+.    +||.|++| ||++++|||+.+||+||++||||+++
T Consensus        27 ~~~~v~~~v~~~~g~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gEs~~eaa~REl~EE~Gl~~   88 (162)
T d2o5fa1          27 RVRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEI   88 (162)
T ss_dssp             GSEEEEEEEECTTSCEEEEEC-------CCSBCCSEEEECBTTCCHHHHHHHHHHHHHCCCG
T ss_pred             eEEEEEEEEEcCCCCEEEEEeccCccccccccccccCCcccCCCChhhhhhhhhhheeCcce
Confidence            55688999999999999999863    67999887 99999999999999999999999986

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.78  E-value=3.5e-19  Score=123.99  Aligned_cols=43  Identities=30%  Similarity=0.643  Sum_probs=40.2

Q ss_pred             cEEEEEEcCCC--CcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022           22 QIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus        22 ~vLl~~r~~~~--g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      +|||++|.+.|  |.|.+|||++++|||+.+||.||++||||+.+
T Consensus        55 ~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~eaa~REl~EEtGl~~   99 (202)
T d2fmla2          55 KVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVI   99 (202)
T ss_dssp             EEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCC
T ss_pred             EEEEEEecCCCCCCcEECCEEeecCCCCHHHHhhhhhHhhcCeee
Confidence            79999998754  89999999999999999999999999999985

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.74  E-value=2.8e-18  Score=118.04  Aligned_cols=66  Identities=26%  Similarity=0.518  Sum_probs=50.1

Q ss_pred             CcCEEEEEE-E-eCCCcEEEEEEcC----CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce--eeEEeecCc
Q 033022            8 YRPNVGVCL-I-NSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS--AEIIAEVPN   73 (129)
Q Consensus         8 ~~~~~~~~i-~-~~~~~vLl~~r~~----~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~--~~~~~~~~~   73 (129)
                      +|.++.+++ + +.+.+|||++|+.    ++|.|+||||++|+|||+.+||+||++||||+..  ..+++.++.
T Consensus        30 ~r~aaVlv~~~~~~~~~vll~kR~~~l~~h~G~~~fPGG~~e~~E~~~~aAlRE~~EE~Gl~~~~~~~lg~l~~  103 (187)
T d1nqza_          30 YRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDD  103 (187)
T ss_dssp             CEEEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCC
T ss_pred             CCccEEEEEEEECCCCEEEEEEcCCCCCCCCCeEeCCccccccCCchhHHHHHHHHHhhccccceeEEeecccc
Confidence            455544444 4 3345899999984    5799999999999999999999999999999985  344555543

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.72  E-value=1.2e-17  Score=112.09  Aligned_cols=55  Identities=35%  Similarity=0.607  Sum_probs=46.3

Q ss_pred             cCEEEEEEEeCCCcEEEEEEcCCC---CcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022            9 RPNVGVCLINSDSQIFVASRLNVP---GAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus         9 ~~~~~~~i~~~~~~vLl~~r~~~~---g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      +.+|++++++ ++++||+++.+.+   ..|++|||++|+|||+.+||+||++||||+.+
T Consensus        24 ~~aV~vl~~~-~~~vlLv~q~R~~~~~~~~elP~G~ve~gE~~~~aA~REl~EEtG~~~   81 (158)
T d1v8ya_          24 KPAVAVIALR-EGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSG   81 (158)
T ss_dssp             CCEEEEEEEE-TTEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSEEE
T ss_pred             CCEEEEEEEE-CCEEEEEEeeecCCCCceEecchhhccccCCHHHHHHHHHHhhcCCcc
Confidence            3467777766 5799999876533   58999999999999999999999999999974

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=6.8e-17  Score=110.92  Aligned_cols=53  Identities=26%  Similarity=0.332  Sum_probs=43.6

Q ss_pred             EEEeCCCcEEEEEEcCCC---CcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeE
Q 033022           15 CLINSDSQIFVASRLNVP---GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI   67 (129)
Q Consensus        15 ~i~~~~~~vLl~~r~~~~---g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~   67 (129)
                      ++...++++||+++.+.+   ..|++|||++|+|||+.+||+||++||||+.+..+
T Consensus        53 vi~~~~~~vlLvrq~R~~~~~~~~elP~G~ie~gE~p~~aA~REl~EEtG~~~~~~  108 (186)
T d1vhza_          53 IVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDL  108 (186)
T ss_dssp             EEEEETTEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEE
T ss_pred             EEEccCCEEEEEEeeecCCCceEeecccccCCCCcCHHHHHHHHHHHHhccccccc
Confidence            333446789999876544   36999999999999999999999999999986543

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.68  E-value=5.5e-17  Score=112.73  Aligned_cols=59  Identities=29%  Similarity=0.548  Sum_probs=49.8

Q ss_pred             cCEEEEEEEeCCCcEEEEEEcCCC---CcEEcCeeecC-CCCCHHHHHHHHHHHHhCCceeeE
Q 033022            9 RPNVGVCLINSDSQIFVASRLNVP---GAWQMPQGGIE-DGEDPKLAAMRELREETGIVSAEI   67 (129)
Q Consensus         9 ~~~~~~~i~~~~~~vLl~~r~~~~---g~w~~PgG~ve-~gEs~~~aa~RE~~EEtGl~~~~~   67 (129)
                      +.+|+++.+++++++||+++.+.+   ..|++|+|++| +||++++||+||++||||+.+..+
T Consensus        38 ~~~V~vl~~~~~~~ilLvrq~R~~~~~~~welPaG~ie~~gE~~~~aA~REl~EETG~~~~~~  100 (202)
T d1mqea_          38 FGAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTW  100 (202)
T ss_dssp             CCEEEEEECCTTSEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEE
T ss_pred             CCeEEEEEECCCCEEEEEEecccccCceEEeccccccccCCCCHHHHHHHHHhhccccccccc
Confidence            346777778888999999986544   36999999999 799999999999999999986443

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.66  E-value=2.7e-16  Score=101.61  Aligned_cols=96  Identities=14%  Similarity=0.149  Sum_probs=61.6

Q ss_pred             EEEEEEEeCCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeE--
Q 033022           11 NVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT--   85 (129)
Q Consensus        11 ~~~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~--   85 (129)
                      .++++|++.+|++||.||..   ++|.|+||+|+++++|+ .+++.||++||+|+++.. ...+ ..+.|.|++....  
T Consensus         6 v~~~vi~~~~g~iLl~kR~~~~~~~GlWefP~g~~e~~~~-~e~l~rel~ee~gi~v~~-~~~l-~~~~H~fsh~~~~~~   82 (127)
T d1rrqa2           6 LAVAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGADG-KEKLEQMVGEQYGLQVEL-TEPI-VSFEHAFSHLVWQLT   82 (127)
T ss_dssp             EEEEEEEESSSEEEEEECCSSSTTTTCEECCEEECTTTCC-HHHHHHTTC----CEEEE-CSCC-EEEEEECSSEEEEEE
T ss_pred             EEEEEEEECCCEEEEEECCCCCCCCCceecccccccCCCC-HHHHHHHhhhhcceEEEe-cccc-ccceEecCCeEEEEE
Confidence            34556678899999999975   45999999999998777 789999999999998532 1111 2345566554332  


Q ss_pred             -eEEEEecceeeeeeeeEEeccccc
Q 033022           86 -KVNRLWGGEWHGQAQKWYASLLLL  109 (129)
Q Consensus        86 -~~~~~~~~~~~~~~~~W~~~~~~~  109 (129)
                       +.+....+....++.+|+..+.+.
T Consensus        83 ~~~~~~~~~~~~~~~~~Wv~~~el~  107 (127)
T d1rrqa2          83 VFPGRLVHGGPVEEPYRLAPEDELK  107 (127)
T ss_dssp             EEEEEEECCSCCCTTEEEEEGGGGG
T ss_pred             EEEEEECCCCccccceEEeeHHHHh
Confidence             122222233345778899987664

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.62  E-value=1.2e-15  Score=105.45  Aligned_cols=58  Identities=24%  Similarity=0.341  Sum_probs=48.1

Q ss_pred             CCCcCEEEEEEEeCCC-----------cEEEEEEcCCCCcEEcCeeecCCCCC-HHHHHHHHHHHHhCCcee
Q 033022            6 SGYRPNVGVCLINSDS-----------QIFVASRLNVPGAWQMPQGGIEDGED-PKLAAMRELREETGIVSA   65 (129)
Q Consensus         6 ~~~~~~~~~~i~~~~~-----------~vLl~~r~~~~g~w~~PgG~ve~gEs-~~~aa~RE~~EEtGl~~~   65 (129)
                      .|+|.++.++++..+.           .+|+++|.  +|.|.||||++++||+ +++||.||++||||+.+.
T Consensus        17 ~g~r~a~~~~~~~~~~~~~~~~~~~~~~vl~~~r~--~g~~~~pgg~~~~~e~~~~~~~~re~~ee~g~~~~   86 (196)
T d1u20a1          17 EGYKHACHALLHAPSQAKLFDRVPIRRVLLMMMRF--DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALA   86 (196)
T ss_dssp             SSCEEEEEEEEEEECCCEETTTEECCEEEEEEEET--TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGG
T ss_pred             CCcceEEEEEEEcCCCceEEEEecCCcEEEEEEec--CCcEECCccccCCCCCcHHHHHHHHHHHHhCccce
Confidence            5789999988886553           35666664  5999999999999996 688999999999999853

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=1.4e-14  Score=100.86  Aligned_cols=59  Identities=20%  Similarity=0.275  Sum_probs=48.6

Q ss_pred             CEEEEEEEeCC-CcEEEEEEcCCC--------CcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEE
Q 033022           10 PNVGVCLINSD-SQIFVASRLNVP--------GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII   68 (129)
Q Consensus        10 ~~~~~~i~~~~-~~vLl~~r~~~~--------g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~   68 (129)
                      .+|++++++.+ ++++|+++.+.+        -.|++|+|.+|+|||+++||+||++||||+.+..+.
T Consensus        58 ~~v~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~lElPAG~id~gE~p~~aA~REL~EEtG~~~~~l~  125 (209)
T d1g0sa_          58 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTK  125 (209)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEE
T ss_pred             CEEEEEEEEecCCeEEEEEEEeccccccCCCceEEeeceeecCCCcCHHHHHHHHHHhhhccccccee
Confidence            46777777664 689999987633        158999999999999999999999999999975543

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.6e-13  Score=97.86  Aligned_cols=42  Identities=29%  Similarity=0.434  Sum_probs=39.0

Q ss_pred             cEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022           22 QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS   64 (129)
Q Consensus        22 ~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~   64 (129)
                      ++||++|.+ .|.|.+|||+|++||++.+||+||+.||||+.+
T Consensus       140 qvLlIkR~d-~g~WaLPGG~Vd~GEs~~~Aa~REl~EETGl~~  181 (292)
T d1q33a_         140 QFVAIKRKD-CGEWAIPGGMVDPGEKISATLKREFGEEALNSL  181 (292)
T ss_dssp             EEEEEECTT-TCSEECCCEECCTTCCHHHHHHHHHHHHHSCGG
T ss_pred             EEEEEEecC-CCcEeCCcccCCCCCCHHHHHHHHHHHHhCccc
Confidence            589999876 579999999999999999999999999999985

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=1.3e-11  Score=84.40  Aligned_cols=58  Identities=19%  Similarity=0.324  Sum_probs=44.8

Q ss_pred             CEEEEEEEeC-CCcEEEEEEcCCC---------CcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEE
Q 033022           10 PNVGVCLINS-DSQIFVASRLNVP---------GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII   68 (129)
Q Consensus        10 ~~~~~~i~~~-~~~vLl~~r~~~~---------g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~   68 (129)
                      .+|+++.++. +++++|+++.+.|         -.|.+|+|.++ ||++++||+||+.||||+.+..+.
T Consensus        44 ~aV~Vl~~~~~~~~vllvrQ~R~~v~~~~~~~~~~~e~paG~~d-~e~p~~aA~REL~EEtG~~~~~~~  111 (189)
T d1viua_          44 NGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVR  111 (189)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECHHHHTTTCSSCEEEECEEEECT-TSCHHHHHHHHHHHHHSCCCCCCE
T ss_pred             CEEEEEEEEcCCCEEEEEEeeccceeeccCCCcceecCcEEecC-CCCHHHHHHHHHHHhhCCcceEEE
Confidence            4777777764 5789999886522         25678999887 677899999999999999975443

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.9e-11  Score=78.45  Aligned_cols=53  Identities=21%  Similarity=0.278  Sum_probs=40.7

Q ss_pred             EEEEEEEeC---CCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCc
Q 033022           11 NVGVCLINS---DSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIV   63 (129)
Q Consensus        11 ~~~~~i~~~---~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~   63 (129)
                      .+.+++.+.   +++|||.||..   .+|.|+||+|.++.||+..++|.||..+|.+..
T Consensus        14 ~~~~vv~~~~~~~~~iLl~kR~~~g~l~GlWefP~~~~~~~e~~~~~~~~~~~~e~~~~   72 (142)
T d1x51a1          14 SATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGP   72 (142)
T ss_dssp             EEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCC
T ss_pred             EEEEEEEecCCCCCEEEEEECCCCCCCCcceeeeEeeccCCcchhHHHHHHHHHHhccC
Confidence            444445443   57999999975   459999999999999999998887766666544