Citrus Sinensis ID: 033111

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------
Protein Sequence
MANFVVQLPKTNSFNLKRFCVSASSNGNPPGSSESRGSGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLGLPTIRCKVRRGTKETLRHHLR
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEEcccccccccccccccccccEEEEccccccccccccccccHHHHHHHHHHHHHcccccccEEEEEccEEEEEEcHHHHHHHHHcccccccEEEEEccHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccHHHcEEEEEEcccccccccccccccccEEEEEcHHHccccccccccccHHHHHHHHHHHHHccccccEEEEEEccEEEEEccHHHHHHHHHHccccccEEEEEccHHHHHHHcc
Coil and Loop (DISEMBL)
manfvvqlpktnsfnlkrfcvsassngnppgssesrgsgpvilelpldkirrplmrtrandqNKVKELMDSIQQIGlqvpidvievdgnyygfsgchryeahqrlglptirckvrrgTKETLRHHLR
Flexible Loop (DISEMBL)
manfvvqlpktnsfnLKRFCVSASsngnppgssesrgsgpvilelpldkirrplmrtrandqnkvKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEahqrlglptirckvrrgtketlrhhlr
Low Complexity Region (SEG)
MANFVVQLPKTNSFNLKRFCVsassngnppgssesrgsgpVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLGLPTIRCKVRRGTKETLRHHLR
Disordered region (IsUnstruct)
*************FNLKRFC***********************************************LMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLGLPTIRCKVR************
Disordered Region (DISOPRED)
********************************************LPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLGLPTIRCKVRRGTKETLRHHLR
Disordered Region (DISEMBL)
MANFVVQLPKTNSFNLKRFCVSA**************SGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLGLPTIRCKVRR***********
Disordered Region (DISPRO)
*ANFVVQLPKTNSFNLKRFCVSASS*************GPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLGLPTIRCKVRRGTKETLRHHLR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANFVVQLPKTNSFNLKRFCVSASSNGNPPGSSESRGSGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLGLPTIRCKVRRGTKETLRHHLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	127	2.2.26 [Sep-21-2011]
Q8GY89	125	Sulfiredoxin, chloroplast	yes	no	0.984	1.0	0.716	1e-43
Q54RQ8	2192	BEACH domain-containing p	yes	no	0.622	0.036	0.393	2e-09
Q9VX10	162	Putative sulfiredoxin OS=	no	no	0.629	0.493	0.344	1e-08
Q9D975	136	Sulfiredoxin-1 OS=Mus mus	yes	no	0.629	0.588	0.397	4e-07
Q9BYN0	137	Sulfiredoxin-1 OS=Homo sa	yes	no	0.779	0.722	0.355	5e-07
Q9URV9	124	Sulfiredoxin OS=Schizosac	yes	no	0.692	0.709	0.293	1e-05
P36077	127	Sulfiredoxin OS=Saccharom	yes	no	0.637	0.637	0.297	0.0004

>sp|Q8GY89|SRX_ARATH Sulfiredoxin, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SRX PE=1 SV=1

 Score =  174 bits (442), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 91/127 (71%), Positives = 104/127 (81%), Gaps = 2/127 (1%)

Query: 1   MANFVVQLPKTNSFNLKRFCVSASSNGNPPGSSESRGSGPVILELPLDKIRRPLMRTRAN 60
           MAN +++LP   S        S+S+   P     S G GP+I+ELPL+KIRRPLMRTR+N
Sbjct: 1   MANLMMRLP--ISLRSFSVSASSSNGSPPVIGGSSGGVGPMIVELPLEKIRRPLMRTRSN 58

Query: 61  DQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLGLPTIRCKVRRGTKE 120
           DQNKVKELMDSI+QIGLQVPIDVIEVDG YYGFSGCHRYEAHQ+LGLPTIRCK+R+GTKE
Sbjct: 59  DQNKVKELMDSIRQIGLQVPIDVIEVDGTYYGFSGCHRYEAHQKLGLPTIRCKIRKGTKE 118

Query: 121 TLRHHLR 127
           TLRHHLR
Sbjct: 119 TLRHHLR 125

Contributes to oxidative stress resistance by reducing cysteine-sulfinic acid formed under exposure to oxidants in a peroxiredoxin. May catalyze the reduction in a multi-step process by acting both as a specific phosphotransferase and a thioltransferase. Required to switch on the antioxidant pathway to regenerate the oxidative damage. In mitochondrion, catalyzes the retroreduction of the inactive sulfinic form of atypical Prx IIF using thioredoxin as reducing agent.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 8EC: .EC: 9EC: 8EC: .EC: 2

>sp|Q54RQ8|LVSE_DICDI BEACH domain-containing protein lvsE OS=Dictyostelium discoideum GN=lvsE PE=4 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 10/89 (11%)

Query: 42  ILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVP-IDVIEVDGN------YYGFS 94
           + E+P+  I RPL      D+ KV  LM++I+  G+++P IDV  V G       Y+ F 
Sbjct: 10  VTEMPMSVIHRPL--PSELDEEKVLSLMETIKS-GVEIPPIDVNWVKGKDENNNYYFSFG 66

Query: 95  GCHRYEAHQRLGLPTIRCKVRRGTKETLR 123
           GCHRYEA +RL L TIR ++ + T   ++
Sbjct: 67  GCHRYEATKRLNLKTIRARIIKSTPSDIK 95

Dictyostelium discoideum (taxid: 44689)

>sp|Q9VX10|SRX_DROME Putative sulfiredoxin OS=Drosophila melanogaster GN=CG6762 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 10/90 (11%)

Query: 45  LPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQ---VPIDVIEVDGN-----YYGFSGC 96
           +P+  I+RP+      D+ KV+ LM++I+    +    PID++ + G+     Y+ F GC
Sbjct: 66  VPMSVIQRPI--PSVLDEQKVQSLMETIKNETSEDEVPPIDLLWISGSEGGDYYFSFGGC 123

Query: 97  HRYEAHQRLGLPTIRCKVRRGTKETLRHHL 126
           HR+EA++RL  PTI+ K+ + T   L H++
Sbjct: 124 HRFEAYKRLQRPTIKAKLVKSTLGDLYHYM 153

Contributes to oxidative stress resistance by reducing cysteine-sulfinic acid formed under exposure to oxidants in a peroxiredoxin. May catalyze the reduction in a multi-step process by acting both as a specific phosphotransferase and a thioltransferase.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 8

EC: .

EC: 9

EC: 8

EC: .

EC: 2

>sp|Q9D975|SRXN1_MOUSE Sulfiredoxin-1 OS=Mus musculus GN=Srxn1 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 8/88 (9%)

Query: 45  LPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVP-IDVIEVDGN-----YYGFSGCHR 98
           +P+  + RPL      D  KV+ L+D+I      VP IDV+ + G      YY F GCHR
Sbjct: 43  VPIAVLIRPLPSVL--DPAKVQSLVDTILADPDSVPPIDVLWIKGAQGGDYYYSFGGCHR 100

Query: 99  YEAHQRLGLPTIRCKVRRGTKETLRHHL 126
           Y A+Q+L   TI  K+ R T   LR +L
Sbjct: 101 YAAYQQLQRETIPAKLVRSTLSDLRMYL 128

Contributes to oxidative stress resistance by reducing cysteine-sulfinic acid formed under exposure to oxidants in the peroxiredoxins PRDX1, PRDX2, PRDX3 and PRDX4. Does not act on PRDX5 or PRDX6. May catalyze the reduction in a multi-step process by acting both as a specific phosphotransferase and a thioltransferase.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 8

EC: .

EC: 9

EC: 8

EC: .

EC: 2

>sp|Q9BYN0|SRXN1_HUMAN Sulfiredoxin-1 OS=Homo sapiens GN=SRXN1 PE=1 SV=2

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 8/107 (7%)

Query: 26  NGNPPGSSESRGSGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVP-IDVI 84
           +G   G S   G    +  +PL  + RPL      D  KV+ L+D+I++    VP IDV+
Sbjct: 25  SGGAQGGSIHSGRIAAVHNVPLSVLIRPLPSVL--DPAKVQSLVDTIREDPDSVPPIDVL 82

Query: 85  EVDGN-----YYGFSGCHRYEAHQRLGLPTIRCKVRRGTKETLRHHL 126
            + G      +Y F GCHRY A+Q+L   TI  K+ + T   LR +L
Sbjct: 83  WIKGAQGGDYFYSFGGCHRYAAYQQLQRETIPAKLVQSTLSDLRVYL 129

Contributes to oxidative stress resistance by reducing cysteine-sulfinic acid formed under exposure to oxidants in the peroxiredoxins PRDX1, PRDX2, PRDX3 and PRDX4. Does not act on PRDX5 or PRDX6. May catalyze the reduction in a multi-step process by acting both as a specific phosphotransferase and a thioltransferase.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 8

EC: .

EC: 9

EC: 8

EC: .

EC: 2

>sp|Q9URV9|SRX1_SCHPO Sulfiredoxin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srx1 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 21/109 (19%)

Query: 37  GSGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQ---------------QIGLQVPI 81
           GS   I+EL + ++ RP+      D NKV  +M+++                + G   P+
Sbjct: 7   GSNNNIVELDMSELIRPIPPVL--DMNKVNSMMETMTGKTPPASCGLTSEDLEAGELPPV 64

Query: 82  DVIEVDGN----YYGFSGCHRYEAHQRLGLPTIRCKVRRGTKETLRHHL 126
           DV+    +    Y+ F GCHR  AH   G   +RCK+   +  TLR +L
Sbjct: 65  DVLTFKKSGKPYYFAFGGCHRLRAHDEAGRKKVRCKLVNCSPNTLRLYL 113

Contributes to oxidative stress resistance by reducing cysteine-sulfinic acid formed under exposure to oxidants in a peroxiredoxin. May catalyze the reduction in a multi-step process by acting both as a specific phosphotransferase and a thioltransferase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 8

EC: .

EC: 9

EC: 8

EC: .

EC: 2

>sp|P36077|SRX1_YEAST Sulfiredoxin OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRX1 PE=1 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 30/111 (27%)

Query: 44  ELPLDKIRRPLMRTRANDQNKVKELMDSIQQI------------------GLQVPIDV-- 83
           E+PL +IRRPL      D  K+  ++ +++ I                  G   P+DV  
Sbjct: 12  EIPLSEIRRPLAPVL--DPQKIDAMVATMKGIPTASKTCSLEQAEAAASAGELPPVDVLG 69

Query: 84  IEVDGN--YYGFSGCHRYEAHQRLGLPT------IRCKVRRGTKETLRHHL 126
           + V G   YY F GCHR +A+ R    T      +RC+V   T   +R +L
Sbjct: 70  VRVKGQTLYYAFGGCHRLQAYDRRARETQNAAFPVRCRVLPATPRQIRMYL 120

Contributes to oxidative stress resistance by reducing cysteine-sulfinic acid formed under exposure to oxidants in the peroxiredoxin TSA1. May catalyze the reduction in a multi-step process by acting both as a specific phosphotransferase and as thioltransferase.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 8

EC: .

EC: 9

EC: 8

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
224120300	125	predicted protein [Populus trichocarpa]	0.976	0.992	0.789	3e-51
255565301	127	Sulfiredoxin-1, putative [Ricinus commun	0.984	0.984	0.759	4e-49
351727875	128	uncharacterized protein LOC100527425 [Gl	0.968	0.960	0.787	6e-48
449521112	129	PREDICTED: sulfiredoxin, chloroplastic/m	0.992	0.976	0.759	9e-48
449455397	129	PREDICTED: sulfiredoxin, chloroplastic/m	0.992	0.976	0.759	1e-47
357475223	125	hypothetical protein MTR_4g084180 [Medic	0.968	0.984	0.782	2e-47
281199945	129	sulfiredoxin precursor protein [Pisum sa	0.984	0.968	0.740	8e-47
388519127	128	unknown [Lotus japonicus]	0.968	0.960	0.734	4e-46
225423668	122	PREDICTED: BEACH domain-containing prote	0.952	0.991	0.757	9e-46
297851908	125	hypothetical protein ARALYDRAFT_473615 [	0.984	1.0	0.716	1e-43

>gi|224120300|ref|XP_002318295.1| predicted protein [Populus trichocarpa] gi|222858968|gb|EEE96515.1| predicted protein [Populus trichocarpa]

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 101/128 (78%), Positives = 113/128 (88%), Gaps = 4/128 (3%)

Query: 1   MANFVVQLPKTNSFNLKRFCVSASSNGNPPGSS-ESRGSGPVILELPLDKIRRPLMRTRA 59
           MANFV++LP T+    + F +SASSNG  PG+S  ++  GPVILELPLDKIRRPLMRTRA
Sbjct: 1   MANFVLRLPATS---FRGFSISASSNGAVPGTSTRAQNGGPVILELPLDKIRRPLMRTRA 57

Query: 60  NDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLGLPTIRCKVRRGTK 119
           ND NKVKELMDSI++IGLQVPIDV+EVDG YYGFSGCHRYEAHQRLGLPTIRCK+RRGTK
Sbjct: 58  NDPNKVKELMDSIKEIGLQVPIDVLEVDGVYYGFSGCHRYEAHQRLGLPTIRCKIRRGTK 117

Query: 120 ETLRHHLR 127
           ETLRHHLR
Sbjct: 118 ETLRHHLR 125

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565301|ref|XP_002523642.1| Sulfiredoxin-1, putative [Ricinus communis] gi|223537094|gb|EEF38728.1| Sulfiredoxin-1, putative [Ricinus communis]

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 98/129 (75%), Positives = 112/129 (86%), Gaps = 4/129 (3%)

Query: 1   MANFVVQLPKTNSFNLKRFCVSASSNGNPPGS--SESRGSGPVILELPLDKIRRPLMRTR 58
           M+NFVV++    + NL+   VSASSNG  PG+  S+++  GPVI+ELPLDKIRRPLMRTR
Sbjct: 1   MSNFVVRVGA--AANLRSLSVSASSNGAAPGNDKSKTQNGGPVIVELPLDKIRRPLMRTR 58

Query: 59  ANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLGLPTIRCKVRRGT 118
           AND  KV++LMDSI+QIGLQVPIDV+EVDG YYGFSGCHRYEAHQRLGLPTIRCKVRRGT
Sbjct: 59  ANDPTKVQDLMDSIEQIGLQVPIDVLEVDGVYYGFSGCHRYEAHQRLGLPTIRCKVRRGT 118

Query: 119 KETLRHHLR 127
           KETLRHHLR
Sbjct: 119 KETLRHHLR 127

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727875|ref|NP_001235896.1| uncharacterized protein LOC100527425 [Glycine max] gi|255632314|gb|ACU16515.1| unknown [Glycine max]

 Score =  195 bits (495), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 104/132 (78%), Positives = 110/132 (83%), Gaps = 9/132 (6%)

Query: 1   MANFVVQLPKTNSFNLKRFCVSASSNGN--PPGSSESRGSG---PVILELPLDKIRRPLM 55
           MANFV+Q P T    L+ F VSASSN N  PPG S S   G   PVILELPLDKIRRPLM
Sbjct: 1   MANFVLQFPNT----LRSFAVSASSNSNGAPPGGSGSSSGGGGGPVILELPLDKIRRPLM 56

Query: 56  RTRANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLGLPTIRCKVR 115
           RTR NDQNKV ELMDSI++IGLQVPIDV+EVDG YYGFSGCHRYEAHQRLGLPTIRCK+R
Sbjct: 57  RTRTNDQNKVLELMDSIKEIGLQVPIDVLEVDGVYYGFSGCHRYEAHQRLGLPTIRCKIR 116

Query: 116 RGTKETLRHHLR 127
           RGTKETLRHHLR
Sbjct: 117 RGTKETLRHHLR 128

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449521112|ref|XP_004167575.1| PREDICTED: sulfiredoxin, chloroplastic/mitochondrial-like [Cucumis sativus]

 Score =  194 bits (493), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 98/129 (75%), Positives = 112/129 (86%), Gaps = 3/129 (2%)

Query: 1   MAN-FVVQLPKTNSFNLKRFCVSASSNGNPPGSSES-RGSGPVILELPLDKIRRPLMRTR 58
           MAN F+++ P  +S +L+    SASSNG  P S+ S  GSGP+IL+LPL+KIRRPLMRTR
Sbjct: 2   MANLFILKFPSFSS-SLRTVSASASSNGAHPLSAGSGNGSGPMILQLPLEKIRRPLMRTR 60

Query: 59  ANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLGLPTIRCKVRRGT 118
           AND +KVKELMDSIQ+IGLQVPIDV+EVDG YYGFSGCHRYEAHQRLGLPTIRCK+RRGT
Sbjct: 61  ANDPDKVKELMDSIQKIGLQVPIDVLEVDGVYYGFSGCHRYEAHQRLGLPTIRCKIRRGT 120

Query: 119 KETLRHHLR 127
           KETLRHHLR
Sbjct: 121 KETLRHHLR 129

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455397|ref|XP_004145439.1| PREDICTED: sulfiredoxin, chloroplastic/mitochondrial-like [Cucumis sativus]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 98/129 (75%), Positives = 111/129 (86%), Gaps = 3/129 (2%)

Query: 1   MAN-FVVQLPKTNSFNLKRFCVSASSNGNPPGSSES-RGSGPVILELPLDKIRRPLMRTR 58
           MAN F+++ P  +S +L+    SASSNG  P S+ S  GSGP+ILELPL+KIRRPLMRTR
Sbjct: 2   MANLFILKFPSFSS-SLRTVSASASSNGAHPLSAGSGNGSGPMILELPLEKIRRPLMRTR 60

Query: 59  ANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLGLPTIRCKVRRGT 118
           AND +KVKELMDSIQ+IGLQVPIDV+EVDG YYGFSGCHRYEAHQ LGLPTIRCK+RRGT
Sbjct: 61  ANDPDKVKELMDSIQEIGLQVPIDVLEVDGVYYGFSGCHRYEAHQHLGLPTIRCKIRRGT 120

Query: 119 KETLRHHLR 127
           KETLRHHLR
Sbjct: 121 KETLRHHLR 129

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475223|ref|XP_003607897.1| hypothetical protein MTR_4g084180 [Medicago truncatula] gi|85719364|gb|ABC75369.1| ParB-like nuclease [Medicago truncatula] gi|355508952|gb|AES90094.1| hypothetical protein MTR_4g084180 [Medicago truncatula] gi|388516001|gb|AFK46062.1| unknown [Medicago truncatula]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 101/129 (78%), Positives = 111/129 (86%), Gaps = 6/129 (4%)

Query: 1   MANFVVQLPKTNSFNLKRFCVSASSN--GNPPGSSESRGSGPVILELPLDKIRRPLMRTR 58
           MANFV+Q+P T    L+ F V ASSN  G   G S S G GPVILELPLDKIRRP+MRTR
Sbjct: 1   MANFVLQVPNT----LRSFTVFASSNPNGALSGGSGSGGVGPVILELPLDKIRRPMMRTR 56

Query: 59  ANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLGLPTIRCKVRRGT 118
           +NDQNKV+ELMDSI +IGLQVPIDV+EVDGNYYGFSGCHRYEAHQRLGLPTIRCK+RRGT
Sbjct: 57  SNDQNKVQELMDSISEIGLQVPIDVLEVDGNYYGFSGCHRYEAHQRLGLPTIRCKIRRGT 116

Query: 119 KETLRHHLR 127
           KETLRHH+R
Sbjct: 117 KETLRHHMR 125

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|281199945|gb|ADA57704.1| sulfiredoxin precursor protein [Pisum sativum]

 Score =  191 bits (485), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 109/127 (85%), Gaps = 2/127 (1%)

Query: 2   ANFVVQLPKTNSFNLKRFCVSASSNGNPPGSSESRGSG-PVILELPLDKIRRPLMRTRAN 60
           +NF++QLP   SF +     ++SSNG+PP    S G   P+I+ELPL+KIRRPLMRTR+N
Sbjct: 4   SNFLLQLP-LRSFTVINVASASSSNGSPPVIGGSSGGVGPMIVELPLEKIRRPLMRTRSN 62

Query: 61  DQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLGLPTIRCKVRRGTKE 120
           DQNKVKELMDSI+QIGLQVPIDVIEVDG YYGFSGCHRYEAHQ+LGLPTIRCK+R+GTKE
Sbjct: 63  DQNKVKELMDSIRQIGLQVPIDVIEVDGTYYGFSGCHRYEAHQKLGLPTIRCKIRKGTKE 122

Query: 121 TLRHHLR 127
           TLRHHLR
Sbjct: 123 TLRHHLR 129

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519127|gb|AFK47625.1| unknown [Lotus japonicus]

 Score =  189 bits (480), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 97/132 (73%), Positives = 105/132 (79%), Gaps = 9/132 (6%)

Query: 1   MANFVVQLPKTNSFNLKRFCVSASSNGNPPGSSESRGSGP-----VILELPLDKIRRPLM 55
           MANFV+Q+P T    L+ F VSASSN N      S          V+LELPLDKIRRPLM
Sbjct: 1   MANFVLQVPIT----LRSFTVSASSNSNGAPPGGSGSGCGGGGGPVLLELPLDKIRRPLM 56

Query: 56  RTRANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLGLPTIRCKVR 115
           RTRANDQ KV+ELMDSI +IGLQVPIDV+EVDG YYGFSGCHRYEAHQRLGLPTIRCK+R
Sbjct: 57  RTRANDQKKVEELMDSIAEIGLQVPIDVLEVDGVYYGFSGCHRYEAHQRLGLPTIRCKIR 116

Query: 116 RGTKETLRHHLR 127
           RGTKETLRHHLR
Sbjct: 117 RGTKETLRHHLR 128

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423668|ref|XP_002276335.1| PREDICTED: BEACH domain-containing protein lvsE [Vitis vinifera] gi|297737984|emb|CBI27185.3| unnamed protein product [Vitis vinifera]

 Score =  187 bits (476), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 97/128 (75%), Positives = 107/128 (83%), Gaps = 7/128 (5%)

Query: 1   MANFVVQLPKTNSFNLKRFCVSAS-SNGNPPGSSESRGSGPVILELPLDKIRRPLMRTRA 59
           M +FVVQ P      L+ F V AS +NG P  S +SRG  PVILELPLDKIRRPL+RTR+
Sbjct: 1   MGSFVVQFPS----KLRNFTVWASPNNGVPFDSPQSRG--PVILELPLDKIRRPLLRTRS 54

Query: 60  NDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLGLPTIRCKVRRGTK 119
           ND  KVKELM+SI++IGLQVPIDV+EVDG YYGFSGCHRYEAHQRLGLPTIRCKVRRGTK
Sbjct: 55  NDPEKVKELMESIREIGLQVPIDVLEVDGAYYGFSGCHRYEAHQRLGLPTIRCKVRRGTK 114

Query: 120 ETLRHHLR 127
           ETLRHHLR
Sbjct: 115 ETLRHHLR 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851908|ref|XP_002893835.1| hypothetical protein ARALYDRAFT_473615 [Arabidopsis lyrata subsp. lyrata] gi|297339677|gb|EFH70094.1| hypothetical protein ARALYDRAFT_473615 [Arabidopsis lyrata subsp. lyrata]

 Score =  180 bits (457), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 91/127 (71%), Positives = 104/127 (81%), Gaps = 2/127 (1%)

Query: 1   MANFVVQLPKTNSFNLKRFCVSASSNGNPPGSSESRGSGPVILELPLDKIRRPLMRTRAN 60
           MAN +++LP   S        S+S+   P     S G GP+I+ELPLDKIRRPLMRTR+N
Sbjct: 1   MANLMMRLPI--SLRSFSVSASSSNGSPPVIGGPSGGVGPMIVELPLDKIRRPLMRTRSN 58

Query: 61  DQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLGLPTIRCKVRRGTKE 120
           DQNKVKELMDSI+QIGLQVP+DVIEVDG YYGFSGCHRYEAHQ+LGLPTIRCK+R+GTKE
Sbjct: 59  DQNKVKELMDSIRQIGLQVPVDVIEVDGTYYGFSGCHRYEAHQKLGLPTIRCKIRKGTKE 118

Query: 121 TLRHHLR 127
           TLRHHLR
Sbjct: 119 TLRHHLR 125

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
FB|FBgn0030876	162	CG6762 [Drosophila melanogaste	0.629	0.493	0.344	2.2e-09
ZFIN|ZDB-GENE-091230-2	140	srxn1 "sulfiredoxin 1 homolog	0.629	0.571	0.4	2.9e-09
DICTYBASE|DDB_G0282925	2192	lvsE "BEACH domain-containing	0.622	0.036	0.415	7.2e-09
UNIPROTKB|E1BMY2	137	SRXN1 "Uncharacterized protein	0.629	0.583	0.397	2e-08
POMBASE|SPBC106.02c	124	srx1 "sulfiredoxin" [Schizosac	0.370	0.379	0.392	2.4e-08
UNIPROTKB|F1S862	137	LOC100517736 "Uncharacterized	0.629	0.583	0.386	5.3e-08
UNIPROTKB|Q9BYN0	137	SRXN1 "Sulfiredoxin-1" [Homo s	0.629	0.583	0.386	8.7e-08
MGI|MGI:104971	136	Srxn1 "sulfiredoxin 1 homolog	0.629	0.588	0.397	1.1e-07
UNIPROTKB|J9P1B6	95	SRXN1 "Uncharacterized protein	0.629	0.842	0.386	1.4e-07
RGD|1307332	243	Srxn1 "sulfiredoxin 1" [Rattus	0.535	0.279	0.394	1.3e-05

FB|FBgn0030876 CG6762 [Drosophila melanogaster (taxid:7227)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 31/90 (34%), Positives = 54/90 (60%)

Query:    45 LPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQ---VPIDVIEVDGN-----YYGFSGC 96
             +P+  I+RP+      D+ KV+ LM++I+    +    PID++ + G+     Y+ F GC
Sbjct:    66 VPMSVIQRPIPSVL--DEQKVQSLMETIKNETSEDEVPPIDLLWISGSEGGDYYFSFGGC 123

Query:    97 HRYEAHQRLGLPTIRCKVRRGTKETLRHHL 126
             HR+EA++RL  PTI+ K+ + T   L H++
Sbjct:   124 HRFEAYKRLQRPTIKAKLVKSTLGDLYHYM 153

GO:0005575 "cellular_component" evidence=ND

GO:0032542 "sulfiredoxin activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

ZFIN|ZDB-GENE-091230-2 srxn1 "sulfiredoxin 1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 36/90 (40%), Positives = 51/90 (56%)

Query:    45 LPLDKIRRPLMRTRANDQNKVKELMDSIQQ---IGLQVPIDVI----EVDGNYY-GFSGC 96
             +P+  I RP+      D+ KV+ LM SIQ+   I +  PIDV+    E  GNYY  F GC
Sbjct:    45 IPMGVIIRPIPPVL--DEQKVQSLMTSIQECSDISVVPPIDVLWITGEKGGNYYYSFGGC 102

Query:    97 HRYEAHQRLGLPTIRCKVRRGTKETLRHHL 126
             HR+ A+QRL + +I  K+ +     LR +L
Sbjct:   103 HRFAAYQRLKMKSIPAKIIKSNISDLRTYL 132

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0032542 "sulfiredoxin activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

DICTYBASE|DDB_G0282925 lvsE "BEACH domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 149 (57.5 bits), Expect = 7.2e-09, P = 7.2e-09
 Identities = 37/89 (41%), Positives = 53/89 (59%)

Query:    42 ILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVP-IDVIEVDG-----NYY-GFS 94
             + E+P+  I RPL      D+ KV  LM++I+  G+++P IDV  V G     NYY  F 
Sbjct:    10 VTEMPMSVIHRPLPSEL--DEEKVLSLMETIKS-GVEIPPIDVNWVKGKDENNNYYFSFG 66

Query:    95 GCHRYEAHQRLGLPTIRCKVRRGTKETLR 123
             GCHRYEA +RL L TIR ++ + T   ++
Sbjct:    67 GCHRYEATKRLNLKTIRARIIKSTPSDIK 95

GO:0019933 "cAMP-mediated signaling" evidence=IMP

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|E1BMY2 SRXN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 35/88 (39%), Positives = 50/88 (56%)

Query:    45 LPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVP-IDVIEVDGN-----YYGFSGCHR 98
             +PL  + RPL      DQ KV+ L+D+I++    VP IDV+ + G      +Y F GCHR
Sbjct:    44 VPLSVLIRPLPSVL--DQAKVQSLVDTIRENPDSVPPIDVLWIKGAQGGDYFYSFGGCHR 101

Query:    99 YEAHQRLGLPTIRCKVRRGTKETLRHHL 126
             Y A+Q+L   TI  K+ + T   LR +L
Sbjct:   102 YAAYQQLQRETIPAKLVQSTLSDLRVYL 129

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0032542 "sulfiredoxin activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

POMBASE|SPBC106.02c srx1 "sulfiredoxin" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 95 (38.5 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
 Identities = 20/51 (39%), Positives = 28/51 (54%)

Query:    80 PIDVI--EVDGN--YYGFSGCHRYEAHQRLGLPTIRCKVRRGTKETLRHHL 126
             P+DV+  +  G   Y+ F GCHR  AH   G   +RCK+   +  TLR +L
Sbjct:    63 PVDVLTFKKSGKPYYFAFGGCHRLRAHDEAGRKKVRCKLVNCSPNTLRLYL 113

GO:0003677 "DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0032542 "sulfiredoxin activity" evidence=IDA

GO:0034599 "cellular response to oxidative stress" evidence=IGI

GO:0034613 "cellular protein localization" evidence=IMP

GO:0070301 "cellular response to hydrogen peroxide" evidence=IMP

UNIPROTKB|F1S862 LOC100517736 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 34/88 (38%), Positives = 50/88 (56%)

Query:    45 LPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVP-IDVIEVDGN-----YYGFSGCHR 98
             +PL  + RPL      D  KV+ L+D+I++   +VP IDV+ + G      +Y F GCHR
Sbjct:    44 VPLSVLIRPLPSVL--DPAKVQSLVDTIREDPERVPPIDVLWIKGAQGGDYFYSFGGCHR 101

Query:    99 YEAHQRLGLPTIRCKVRRGTKETLRHHL 126
             Y A+Q+L   TI  K+ + T   LR +L
Sbjct:   102 YAAYQQLQRETIPAKLVQSTLSDLRVYL 129

GO:0032542 "sulfiredoxin activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q9BYN0 SRXN1 "Sulfiredoxin-1" [Homo sapiens (taxid:9606)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 34/88 (38%), Positives = 49/88 (55%)

Query:    45 LPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVP-IDVIEVDGN-----YYGFSGCHR 98
             +PL  + RPL      D  KV+ L+D+I++    VP IDV+ + G      +Y F GCHR
Sbjct:    44 VPLSVLIRPLPSVL--DPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHR 101

Query:    99 YEAHQRLGLPTIRCKVRRGTKETLRHHL 126
             Y A+Q+L   TI  K+ + T   LR +L
Sbjct:   102 YAAYQQLQRETIPAKLVQSTLSDLRVYL 129

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0032542 "sulfiredoxin activity" evidence=IEA

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

MGI|MGI:104971 Srxn1 "sulfiredoxin 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 35/88 (39%), Positives = 47/88 (53%)

Query:    45 LPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVP-IDVIEVDGN-----YYGFSGCHR 98
             +P+  + RPL      D  KV+ L+D+I      VP IDV+ + G      YY F GCHR
Sbjct:    43 VPIAVLIRPLPSVL--DPAKVQSLVDTILADPDSVPPIDVLWIKGAQGGDYYYSFGGCHR 100

Query:    99 YEAHQRLGLPTIRCKVRRGTKETLRHHL 126
             Y A+Q+L   TI  K+ R T   LR +L
Sbjct:   101 YAAYQQLQRETIPAKLVRSTLSDLRMYL 128

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO;ISS

GO:0006979 "response to oxidative stress" evidence=ISO;IDA

GO:0016209 "antioxidant activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=ISO;IDA

GO:0032542 "sulfiredoxin activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=ISO;IDA

UNIPROTKB|J9P1B6 SRXN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 34/88 (38%), Positives = 48/88 (54%)

Query:    45 LPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVP-IDVIEVDGN-----YYGFSGCHR 98
             +PL  + RP       D  KV+ L+D+I++    VP IDV+ + G      +Y F GCHR
Sbjct:     2 VPLSVLIRP--PPSVLDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHR 59

Query:    99 YEAHQRLGLPTIRCKVRRGTKETLRHHL 126
             Y A+Q+L   TI  K+ R T   LR +L
Sbjct:    60 YAAYQQLQRETIPAKLVRSTLSDLRVYL 87

GO:0032542 "sulfiredoxin activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

RGD|1307332 Srxn1 "sulfiredoxin 1" [Rattus norvegicus (taxid:10116)]

 Score = 106 (42.4 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 30/76 (39%), Positives = 42/76 (55%)

Query:    45 LPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVP-IDVIEVDGN-----YYGFSGCHR 98
             +P+  + RPL      D  KV+ L+D+I +    VP IDV+ + G      YY F GCHR
Sbjct:    43 VPIAVLIRPLPSVL--DPVKVQSLVDTILEDPDSVPPIDVLWIKGAQGGDYYYSFGGCHR 100

Query:    99 YEAHQRLGLPTIRCKV 114
             Y A+Q+L   TI  K+
Sbjct:   101 YAAYQQLQRETIPAKL 116

GO:0003677 "DNA binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0006979 "response to oxidative stress" evidence=IEA;ISO

GO:0016667 "oxidoreductase activity, acting on a sulfur group of donors" evidence=ISO

GO:0032542 "sulfiredoxin activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GY89	SRX_ARATH	1, ., 8, ., 9, 8, ., 2	0.7165	0.9842	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.8.98.2	LOW CONFIDENCE prediction!
3rd Layer	1.8.98	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	127
smart00470	89	smart00470, ParB, ParB-like nuclease domain	3e-24
COG5119	119	COG5119, COG5119, Uncharacterized protein, contain	2e-18
pfam02195	90	pfam02195, ParBc, ParB-like nuclease domain	2e-17
COG1475	240	COG1475, Spo0J, Stage 0 sporulation protein J (ant	2e-08
TIGR04285	255	TIGR04285, nucleoid_noc, nucleoid occlusion protei	2e-05

>gnl|CDD|214678 smart00470, ParB, ParB-like nuclease domain

 Score = 88.5 bits (220), Expect = 3e-24
 Identities = 26/80 (32%), Positives = 39/80 (48%)

Query: 44  ELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQ 103
           E+P++K+R    + R   +  ++EL +SI++ GL  PI V   DG Y    G  R  A +
Sbjct: 2   EVPIEKLRPNPDQPRLTSEESLEELAESIKENGLLQPIIVRPNDGRYEIIDGERRLRAAK 61

Query: 104 RLGLPTIRCKVRRGTKETLR 123
            LGL  +   VR    E   
Sbjct: 62  LLGLKEVPVIVRDLDDEEAI 81

Plasmid RK2 ParB preferentially cleaves single-stranded DNA. ParB also nicks supercoiled plasmid DNA preferably at sites with potential single-stranded character, like AT-rich regions and sequences that can form cruciform structures. ParB also exhibits 5-->3 exonuclease activity. Length = 89

>gnl|CDD|227449 COG5119, COG5119, Uncharacterized protein, contains ParB-like nuclease domain [General function prediction only]

 Score = 74.7 bits (183), Expect = 2e-18
 Identities = 41/105 (39%), Positives = 48/105 (45%), Gaps = 22/105 (20%)

Query: 42  ILELPLDKIRRPLMRTRANDQNKVKELM---------------DSIQQIGLQVPIDVI-- 84
           I E+PL +IRRPL      D NKV  +M               +     G   P+DV+  
Sbjct: 10  IQEIPLSEIRRPL--PPVLDPNKVNAMMETMTGKTPPASCGLTEEDAAAGELPPVDVLTF 67

Query: 85  EVDGN--YYGFSGCHRYEAHQRLGLPTIRCK-VRRGTKETLRHHL 126
           EVDG   YY F GCHR EA  R G  TI  K VR      LR +L
Sbjct: 68  EVDGQPYYYAFGGCHRLEACDRAGRETILAKRVRCAPNTVLRMYL 112

Length = 119

>gnl|CDD|216926 pfam02195, ParBc, ParB-like nuclease domain

 Score = 70.8 bits (174), Expect = 2e-17
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 44  ELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYG-FSGCHRYEAH 102
           E+P+DK+R    + R   + +++EL+ SI++ GL  PI V +  G  Y    G  R  A 
Sbjct: 2   EVPIDKLRPNEDQPRLTSEEELEELIASIKEHGLLQPIIVRKTPGGRYEIIDGHRRLRAA 61

Query: 103 QRLGLPTIRCKVRRGTKETL 122
           + LGL  +   V     E  
Sbjct: 62  KLLGLKEVPVIVLELDDEEA 81

Length = 90

>gnl|CDD|224392 COG1475, Spo0J, Stage 0 sporulation protein J (antagonist of Soj) containing ParB-like nuclease domain [Transcription]

 Score = 50.3 bits (120), Expect = 2e-08
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 12/88 (13%)

Query: 41  VILELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPIDVIE----VDGNYYGFSG 95
            ++E+ +  I   PL   +  D+  ++EL  SI++ GL  PI V      VDG+      
Sbjct: 3   RVVEIDIVLIAPNPLQPRKKFDEESLEELAASIKEFGLIQPIVVRPRYEIVDGH------ 56

Query: 96  CHRYEAHQRLGLPTIRCKVRRGTKETLR 123
             R  A + LGL  +   VR    E L 
Sbjct: 57  -RRLRAAKLLGLEEVPVIVRDLEDEKLL 83

Length = 240

>gnl|CDD|234533 TIGR04285, nucleoid_noc, nucleoid occlusion protein

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 42  ILELPLDKIRRPLMRTRAN-DQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYE 100
           + ++P+DKI     + R   D+  ++EL  SI++ GL  PI V + D  Y   +G  R+ 
Sbjct: 2   VQQIPIDKIVPNPYQPRKVFDEESIEELAQSIKEHGLIQPIVVRKKDDKYEIIAGERRFR 61

Query: 101 AHQRLGLPTIRCKVR 115
           A + LG   +   VR
Sbjct: 62  ACKLLGWEEVPAIVR 76

This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete. Length = 255

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	127
smart00470	89	ParB ParB-like nuclease domain. Plasmid RK2 ParB p	99.87
PF02195	90	ParBc: ParB-like nuclease domain; InterPro: IPR003	99.85
TIGR00180	187	parB_part ParB-like partition proteins. This model	99.83
TIGR03454	325	partition_RepB plasmid partitioning protein RepB.	99.8
PRK13866	336	plasmid partitioning protein RepB; Provisional	99.75
PRK13832	520	plasmid partitioning protein; Provisional	99.74
COG1475	240	Spo0J Stage 0 sporulation protein J (antagonist of	99.74
TIGR03764	258	ICE_PFGI_1_parB integrating conjugative element, P	99.71
TIGR03734	554	PRTRC_parB PRTRC system ParB family protein. A nov	99.68
PRK13698	323	plasmid-partitioning protein; Provisional	99.62
KOG3388	136	consensus Predicted transcription regulator/nuclea	99.42
COG5119	119	Uncharacterized protein, contains ParB-like nuclea	99.15
PF08857	163	ParBc_2: Putative ParB-like nuclease; InterPro: IP	97.01
PF03235	221	DUF262: Protein of unknown function DUF262; InterP	96.03
PF14072	346	DndB: DNA-sulfur modification-associated	95.42
PF06245	416	DUF1015: Protein of unknown function (DUF1015); In	94.23
TIGR03187	271	DGQHR DGQHR domain. This highly divergent, unchara	89.23
TIGR03233	355	DNA_S_dndB DNA sulfur modification protein DndB. T	85.23

>smart00470 ParB ParB-like nuclease domain

Probab=99.87  E-value=7e-22  Score=132.74  Aligned_cols=80  Identities=33%  Similarity=0.439  Sum_probs=73.5

Q ss_pred             EeeCCCccC-CCCCCCCCCHHHHHHHHHHHHhcCcccceEEEEeCCeEEEEechHHHHHHHHcCCCeeeEEEEeCCHHHH
Q 033111           44 ELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLGLPTIRCKVRRGTKETL  122 (127)
Q Consensus        44 ~Ipi~~I~~-~~~~rr~~~~~~i~~La~SI~~~G~l~PIvV~~~~g~y~Ii~G~rRl~Aak~LG~~~Ip~iV~d~~d~e~  122 (127)
                      +||+++|.+ +.|+|.. +++++++|++||++.|+++||+|.+.+|.|+|++||||++|++.+|+++|||.+.+.+++++
T Consensus         2 ~i~i~~i~~~~~n~r~~-~~~~~~~l~~si~~~G~~~Pi~v~~~~g~~~vidG~~R~~A~~~lg~~~ip~~v~~~~~~~a   80 (89)
T smart00470        2 EVPIEKLRPNPDQPRLT-SEESLEELAESIKENGLLQPIIVRPNDGRYEIIDGERRLRAAKLLGLKEVPVIVRDLDDEEA   80 (89)
T ss_pred             cccHHHeecCCCCCCcC-CHHHHHHHHHHHHHhCCccCeEEEecCCcEEEEeCHHHHHHHHHcCCCceeEEEEcCCHHHH
Confidence            689999997 7777665 89999999999999999999999998888999999999999999999999999999998776


Q ss_pred             hc
Q 033111          123 RH  124 (127)
Q Consensus       123 r~  124 (127)
                      ..
T Consensus        81 ~~   82 (89)
T smart00470       81 IA   82 (89)
T ss_pred             HH
Confidence            54

Plasmid RK2 ParB preferentially cleaves single-stranded DNA. ParB also nicks supercoiled plasmid DNA preferably at sites with potential single-stranded character, like AT-rich regions and sequences that can form cruciform structures. ParB also exhibits 5--3 exonuclease activity.

>PF02195 ParBc: ParB-like nuclease domain; InterPro: IPR003115 Proteins containing this domain, appear to be related to the Escherichia coli plasmid protein ParB, which preferentially cleaves single-stranded DNA

Probab=99.85  E-value=2.4e-21  Score=129.52  Aligned_cols=81  Identities=33%  Similarity=0.468  Sum_probs=68.5

Q ss_pred             EEeeCCCccC-CCCCCCCCCHHHHHHHHHHHHhcCcccceEEEEeC-CeEEEEechHHHHHHHHcCCCeeeEEEEeCCHH
Q 033111           43 LELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEVD-GNYYGFSGCHRYEAHQRLGLPTIRCKVRRGTKE  120 (127)
Q Consensus        43 ~~Ipi~~I~~-~~~~rr~~~~~~i~~La~SI~~~G~l~PIvV~~~~-g~y~Ii~G~rRl~Aak~LG~~~Ip~iV~d~~d~  120 (127)
                      ++||+++|.+ +.++|.. +++++++|++||+++|+++||+|.+.+ |.|.|++||||++|++.+|+++|||.+.+.+++
T Consensus         1 ~~v~~~~l~~~~~~~r~~-~~~~~~~l~~si~~~G~~~Pi~v~~~~~~~~~IidG~~R~~A~~~lg~~~i~v~v~~~~~~   79 (90)
T PF02195_consen    1 VEVPISKLKPSPDNPRKD-DPEKIEELAESIKENGQLQPIIVRRRNDGKYEIIDGHHRLRAARELGLETIPVIVVDVDDE   79 (90)
T ss_dssp             EEEEGGGEE-SBS-HHHH-HHHHHHHHHHHHHHHGCSS-EEEEEECTCEEEEEE-HHHHHHHHHHT-SEEEEEEEECTHH
T ss_pred             CeEeHHHCCCCCCCCCCC-CHHHHHHHHHHHHhcCCCCCcEEEeecccCCcCCCCHHHHHHHHHcCCCeEeEEEEECCHH
Confidence            5799999997 6666544 789999999999999999999999994 899999999999999999999999999999977


Q ss_pred             HHhc
Q 033111          121 TLRH  124 (127)
Q Consensus       121 e~r~  124 (127)
                      ++..
T Consensus        80 ~~~~   83 (90)
T PF02195_consen   80 EAIA   83 (90)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6653

ParB also nicks supercoiled plasmid DNA preferably at sites with potential single-stranded character, like AT-rich regions and sequences that can form cruciform structures. ParB also exhibits 5--3 exonuclease activity.; GO: 0003677 DNA binding; PDB: 1VK1_A 3CYI_A 1YZS_A 2RII_X 2B6F_A 3HY2_Y 1XW4_X 1XW3_A 1VZ0_G 1R71_C ....

>TIGR00180 parB_part ParB-like partition proteins

Probab=99.83  E-value=2.4e-20  Score=141.18  Aligned_cols=84  Identities=27%  Similarity=0.400  Sum_probs=77.5

Q ss_pred             CcEEEeeCCCccC-CCCCCCCCCHHHHHHHHHHHHhcCcccceEEEEeC---CeEEEEechHHHHHHHHcCCCeeeEEEE
Q 033111           40 PVILELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEVD---GNYYGFSGCHRYEAHQRLGLPTIRCKVR  115 (127)
Q Consensus        40 ~~i~~Ipi~~I~~-~~~~rr~~~~~~i~~La~SI~~~G~l~PIvV~~~~---g~y~Ii~G~rRl~Aak~LG~~~Ip~iV~  115 (127)
                      ..+.+||+++|.+ +.|+|+.++++.+++|++||++.|+++||+|++.+   |+|+|++||||++|++.+|+++|||+|.
T Consensus         3 ~~~~~ip~~~l~~~~~n~R~~~~~~~i~~L~~SI~~~G~~~Pi~V~~~~~~~g~y~ii~G~rR~~A~~~lg~~~ip~~v~   82 (187)
T TIGR00180         3 EGLIEIDIDLLQPNPYQPRKDFSEESLAELIESIKEQGQLQPILVRKHPDQPGRYEIIAGERRWRAAKLAGLKTIPAIVR   82 (187)
T ss_pred             CeeEEeeHHHccCCCCCCCCCCCHHHHHHHHHHHHHhCCccCeEEEECCCCCCCEEEEcCHHHHHHHHHcCCCceeEEEe
Confidence            4578999999998 88888888999999999999999999999999875   7999999999999999999999999999


Q ss_pred             eCCHHHHh
Q 033111          116 RGTKETLR  123 (127)
Q Consensus       116 d~~d~e~r  123 (127)
                      +.++++..
T Consensus        83 ~~~~~~~~   90 (187)
T TIGR00180        83 ELDDEQML   90 (187)
T ss_pred             cCCHHHHH
Confidence            98887653

This model represents the most well-conserved core of a set of chromosomal and plasmid partition proteins related to ParB, including Spo0J, RepB, and SopB. Spo0J has been shown to bind a specific DNA sequence that, when introduced into a plasmid, can serve as partition site. Study of RepB, which has nicking-closing activity, suggests that it forms a transient protein-DNA covalent intermediate during the strand transfer reaction.

>TIGR03454 partition_RepB plasmid partitioning protein RepB

Probab=99.80  E-value=2.1e-19  Score=146.98  Aligned_cols=86  Identities=29%  Similarity=0.370  Sum_probs=78.8

Q ss_pred             CCCcEEEeeCCCccC-CCCCCCCCCHHHHHHHHHHHHhcCcccceEEEEe---CCeEEEEechHHHHHHHHcCCCeeeEE
Q 033111           38 SGPVILELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEV---DGNYYGFSGCHRYEAHQRLGLPTIRCK  113 (127)
Q Consensus        38 ~~~~i~~Ipi~~I~~-~~~~rr~~~~~~i~~La~SI~~~G~l~PIvV~~~---~g~y~Ii~G~rRl~Aak~LG~~~Ip~i  113 (127)
                      ++..+++||++.|.+ +.++|..++++.+++|++||+++||++||+|+++   +|+|+|++|||||+||+.||+ +|+|+
T Consensus        60 ~g~~v~eldp~~I~~s~~~dR~~~d~~~~~eL~~SIr~~Gq~~PIlVR~~p~~~grY~ii~G~RRlrA~r~lG~-~V~Ai  138 (325)
T TIGR03454        60 EGETVVELDPALIDPSFVRDRLDSDDEAFADLVESIRENGQQVPILVRPHPEAEGRYQIAYGHRRLRAARELGR-PVKAV  138 (325)
T ss_pred             CCCceEEeCHHHcCCCCCCCCCCCCHHHHHHHHHHHHHhCCcCCeEEEECCCCCCCEEEEeCHHHHHHHHHcCC-CCcEE
Confidence            477899999999998 7777777899999999999999999999999987   378999999999999999999 69999


Q ss_pred             EEeCCHHHHhc
Q 033111          114 VRRGTKETLRH  124 (127)
Q Consensus       114 V~d~~d~e~r~  124 (127)
                      |.+++|+++.+
T Consensus       139 Vr~lsD~e~~~  149 (325)
T TIGR03454       139 VRELSDEELVI  149 (325)
T ss_pred             EeCCCHHHHHH
Confidence            99999988654

Members of this family are the RepB protein involved in replicon partitioning. RepB is found, in general, as part of a repABC operon in plasmids and small chromosomes, separate from the main chromosome, in various bacteria. This model describes a rather narrow clade of proteins; it should be noted that additional homologs scoring below the trusted cutoff have very similar functions, although they may be named differently.

>PRK13866 plasmid partitioning protein RepB; Provisional

Probab=99.75  E-value=4.2e-18  Score=139.69  Aligned_cols=87  Identities=30%  Similarity=0.321  Sum_probs=76.5

Q ss_pred             CCCcEEEeeCCCccC-CCCCCCCCC-HHHHHHHHHHHHhcCcccceEEEEe---CCeEEEEechHHHHHHHHcCCCeeeE
Q 033111           38 SGPVILELPLDKIRR-PLMRTRAND-QNKVKELMDSIQQIGLQVPIDVIEV---DGNYYGFSGCHRYEAHQRLGLPTIRC  112 (127)
Q Consensus        38 ~~~~i~~Ipi~~I~~-~~~~rr~~~-~~~i~~La~SI~~~G~l~PIvV~~~---~g~y~Ii~G~rRl~Aak~LG~~~Ip~  112 (127)
                      .|..|++|+++.|.+ +.+.|...+ ++++++|++||+++||++||+|+++   +|+|+|++|||||+||+.||.+ |||
T Consensus        61 ~g~~v~eid~~~I~~s~~~dRl~~d~d~~~~eL~~SI~~~Gq~~PIlVRp~p~~~grY~li~G~RR~rA~~~lg~~-v~A  139 (336)
T PRK13866         61 AGEAVVSLDPSMIDGSPIADRLPADVDPKFEQLEASISQEGQQVPILVRPHPEAAGRYQIVYGRRRLRAAVNLRRE-VSA  139 (336)
T ss_pred             CCCeEEEeCHHHccCCcCCCCcCCCccHHHHHHHHHHHHhCCcCCeEEEECCCCCCCEEEEecHHHHHHHHHcCCC-CCE
Confidence            677899999999999 566665554 4789999999999999999999997   3799999999999999999965 999


Q ss_pred             EEEeCCHHHHhcc
Q 033111          113 KVRRGTKETLRHH  125 (127)
Q Consensus       113 iV~d~~d~e~r~y  125 (127)
                      +|.+++|+++.++
T Consensus       140 iVr~l~D~~~~~~  152 (336)
T PRK13866        140 IVRNLTDRELVVA  152 (336)
T ss_pred             EEecCCHHHHHHH
Confidence            9999999987653

>PRK13832 plasmid partitioning protein; Provisional

Probab=99.74  E-value=6.5e-18  Score=144.33  Aligned_cols=81  Identities=20%  Similarity=0.288  Sum_probs=73.0

Q ss_pred             cEEEeeCCCccC-CCCCCCCC-CHHHHHHHHHHHHhcCcccceEEEEe-CC--eEEEEechHHHHHHHHcCCCeeeEEEE
Q 033111           41 VILELPLDKIRR-PLMRTRAN-DQNKVKELMDSIQQIGLQVPIDVIEV-DG--NYYGFSGCHRYEAHQRLGLPTIRCKVR  115 (127)
Q Consensus        41 ~i~~Ipi~~I~~-~~~~rr~~-~~~~i~~La~SI~~~G~l~PIvV~~~-~g--~y~Ii~G~rRl~Aak~LG~~~Ip~iV~  115 (127)
                      ++.+||+++|.+ +.|+|+.+ +++.+++|++||+++|++|||+|++. +|  .|+|++|||||+|++.+|+++|||+|.
T Consensus         2 ~L~~Id~~~L~~nP~NpRr~~~~~e~I~ELAaSIr~~GLLQPIiVRp~~dg~g~YeIIAGeRRlrAa~~aGl~~IPviV~   81 (520)
T PRK13832          2 ELRKVDPRALKDNPDNTRRSKSSPQSDALLLATIKAVGIVQPPVVSPEEDGGNGYIIQAGHRRVKQAIAAGLEEIEVLVT   81 (520)
T ss_pred             eeEEecHHHCCcCCCCCCCCCCCHHHHHHHHHHHHHhCCccCcEEEecCCCCccEEEccCHHHHHHHHHCCCCeeeEEEE
Confidence            588999999998 78888865 56899999999999999999999986 34  799999999999999999999999999


Q ss_pred             eCCHHH
Q 033111          116 RGTKET  121 (127)
Q Consensus       116 d~~d~e  121 (127)
                      +.++++
T Consensus        82 d~dDd~   87 (520)
T PRK13832         82 EAANDN   87 (520)
T ss_pred             eCCcHH
Confidence            887654

>COG1475 Spo0J Stage 0 sporulation protein J (antagonist of Soj) containing ParB-like nuclease domain [Transcription]

Probab=99.74  E-value=6.1e-18  Score=129.76  Aligned_cols=81  Identities=31%  Similarity=0.399  Sum_probs=73.0

Q ss_pred             CcEEEeeCCCccC-CCCCCCCCCHHHHHHHHHHHHhcCcccceEEEEeCCeEEEEechHHHHHHHHcCCCeeeEEEEeCC
Q 033111           40 PVILELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLGLPTIRCKVRRGT  118 (127)
Q Consensus        40 ~~i~~Ipi~~I~~-~~~~rr~~~~~~i~~La~SI~~~G~l~PIvV~~~~g~y~Ii~G~rRl~Aak~LG~~~Ip~iV~d~~  118 (127)
                      ..+..+++..|.. +.++|..++++.+++|+.||+++|+++||+|++   +|+|++|||||+|++.+|+++|||+|.+.+
T Consensus         2 ~~~~~~~~~~i~~~~~~~r~~~~~~~~~~l~~SI~~~G~~~Pi~v~~---~yeiv~G~rR~~Aa~~~g~~~vp~iv~~~~   78 (240)
T COG1475           2 GRVVEIDIVLIAPNPLQPRKKFDEESLEELAASIKEFGLIQPIVVRP---RYEIVDGHRRLRAAKLLGLEEVPVIVRDLE   78 (240)
T ss_pred             CcceecCHHHcCCCCCCCCccCCHHHHHHHHHHHHHhCCcCCeeEee---ceEeeechHHHHHHHHhCCCcCCeEEEECC
Confidence            3467788899998 777777789999999999999999999999998   899999999999999999999999999988


Q ss_pred             HHHHh
Q 033111          119 KETLR  123 (127)
Q Consensus       119 d~e~r  123 (127)
                      +.++.
T Consensus        79 d~~~~   83 (240)
T COG1475          79 DEKLL   83 (240)
T ss_pred             HHHHH
Confidence            66554

>TIGR03764 ICE_PFGI_1_parB integrating conjugative element, PFGI_1 class, ParB family protein

Probab=99.71  E-value=3e-17  Score=130.49  Aligned_cols=81  Identities=22%  Similarity=0.270  Sum_probs=70.5

Q ss_pred             CcEEEeeCCCccC-CCCCCCCCCHHHHHHHHHHHHhcCcccceEEEEeC--CeEEEEe-chHHHHHHHHcCCC-------
Q 033111           40 PVILELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEVD--GNYYGFS-GCHRYEAHQRLGLP-------  108 (127)
Q Consensus        40 ~~i~~Ipi~~I~~-~~~~rr~~~~~~i~~La~SI~~~G~l~PIvV~~~~--g~y~Ii~-G~rRl~Aak~LG~~-------  108 (127)
                      ...+.||+++|.| +.|||+.++++ +++|++||+++|+++||+|++.+  .+|+|++ ||+||+|++.||.+       
T Consensus         6 ~~~~~l~Id~I~Pn~~qPR~~fd~~-l~eLa~SIre~Gl~qPI~Vr~~p~~~~Yii~~GG~rRl~AlkeL~~et~~~r~~   84 (258)
T TIGR03764         6 DTPMVLTLDQLRPYEDNPRTTRNPK-YDEIKASIRERGLDQPPKVTRRPGESDYIIRNGGNTRLQILKELWQETGDERFF   84 (258)
T ss_pred             CceEEEEHHHcccCCCCCCCCCCHH-HHHHHHHHHHhCCcCCeEEEecCCCCcEEEeeCccHHHHHHHHHHHHHhhccCc
Confidence            4578899999999 88888777766 99999999999999999999863  2588887 79999999888865       


Q ss_pred             eeeEEEEeCCHHH
Q 033111          109 TIRCKVRRGTKET  121 (127)
Q Consensus       109 ~Ip~iV~d~~d~e  121 (127)
                      +|||+|.+.++++
T Consensus        85 ~Ipaivr~~~~~~   97 (258)
T TIGR03764        85 RIHCLFKPWPGEL   97 (258)
T ss_pred             eeeEEEEeCCcHH
Confidence            8999999998655

Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.

>TIGR03734 PRTRC_parB PRTRC system ParB family protein

Probab=99.68  E-value=1.1e-16  Score=138.29  Aligned_cols=75  Identities=27%  Similarity=0.238  Sum_probs=68.5

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHhcCcccceEEEEeC-Ce-EEEEechHHHHHHHHcCCCe--eeEEEEeCCHHHHhc
Q 033111           50 IRRPLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEVD-GN-YYGFSGCHRYEAHQRLGLPT--IRCKVRRGTKETLRH  124 (127)
Q Consensus        50 I~~~~~~rr~~~~~~i~~La~SI~~~G~l~PIvV~~~~-g~-y~Ii~G~rRl~Aak~LG~~~--Ip~iV~d~~d~e~r~  124 (127)
                      |.+..|||+.++++.+++|++||+++|++|||+|++.+ |. |+|++|+|||+|++.||.++  |||+|.+.+|+++..
T Consensus         2 i~~~~NPRk~~d~~~IeELA~SIr~~GlLQPIlVRp~~~g~~YeVIAGeRRlrAak~Lg~~~~~IPviV~~~~D~eA~~   80 (554)
T TIGR03734         2 IVPGNNPRRYFDPAEMAELVESIRAKGVLQPILVRPVPGSDLYEVVAGERRYRAALEVFGEDYDIPALIKVLTDEEAEA   80 (554)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCccCeEEEEcCCCCcEEEeeCHHHHHHHHHcCCccCCceEEEecCCHHHHHH
Confidence            56688999999999999999999999999999999874 45 99999999999999999988  999999999887754

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family the member related to ParB, and is designated PRTRC system ParB family protein.

>PRK13698 plasmid-partitioning protein; Provisional

Probab=99.62  E-value=1.6e-15  Score=123.94  Aligned_cols=80  Identities=18%  Similarity=0.093  Sum_probs=70.0

Q ss_pred             EeeCCCcc----C-CCCCCC--CCCHHHHHHHHHHHHhcCcccceEEEEeCCeEEEEechHHHHHHHHcCCCeeeEEEEe
Q 033111           44 ELPLDKIR----R-PLMRTR--ANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLGLPTIRCKVRR  116 (127)
Q Consensus        44 ~Ipi~~I~----~-~~~~rr--~~~~~~i~~La~SI~~~G~l~PIvV~~~~g~y~Ii~G~rRl~Aak~LG~~~Ip~iV~d  116 (127)
                      .||-++|.    . ..|+|.  .++++.+.+|++||+++|+++||+|++.+|.|+||+|.|||+||+.+| .+|||+|.+
T Consensus        61 ~i~~~~ve~~T~V~~~N~R~Q~~f~e~sL~dL~~SIk~~G~~qPiivR~~~g~yEIIaGeRR~rAa~lag-~~i~alV~d  139 (323)
T PRK13698         61 VIRGDSVEKTSRVWSGNERDQELLTEDSLDDLIPSFLLTGQQTPAFGRRVSGVIEIADGSRRRKAAILTE-SDYRVLVGE  139 (323)
T ss_pred             EcCHHHhhhheeecccCCcchhhCCHHHHHHHHHHHHHhCCCcCeEEEEeCCeEEEEechHHHHHHHHhC-CCceEEEEe
Confidence            46666664    3 556654  689999999999999999999999999888999999999999999999 889999999


Q ss_pred             CCHHHHhc
Q 033111          117 GTKETLRH  124 (127)
Q Consensus       117 ~~d~e~r~  124 (127)
                      ++|+++..
T Consensus       140 l~de~a~~  147 (323)
T PRK13698        140 LDDEQMAA  147 (323)
T ss_pred             CCHHHHHH
Confidence            99998753

>KOG3388 consensus Predicted transcription regulator/nuclease, contains ParB domain [Replication, recombination and repair]

Probab=99.42  E-value=9.9e-13  Score=94.07  Aligned_cols=121  Identities=54%  Similarity=0.794  Sum_probs=84.4

Q ss_pred             CcceeeeecCCCcccchhhhhhccC-CCCCCCC-CCCCCCCCcEEEeeCCCccCCCCCCCCCCHHHHHHHHHHHHhcCcc
Q 033111            1 MANFVVQLPKTNSFNLKRFCVSASS-NGNPPGS-SESRGSGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQ   78 (127)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~i~~Ipi~~I~~~~~~rr~~~~~~i~~La~SI~~~G~l   78 (127)
                      |||...|||-    .++-|+.|+.| .|.++.. +..+....-...+++.+|++--..+ .-++....+.+++|++-|.+
T Consensus         1 ~~~~~~r~~~----s~~s~~~S~~S~s~~~pv~~~mSei~rPi~pvLd~qKi~slm~Tm-kn~~~c~les~d~~~~aGel   75 (136)
T KOG3388|consen    1 MANLMMRLPI----SLRSFSTSAHSSSGSPPVEGPMSEIVRPIPPVLDLQKIRSLMETM-KNDQNCVLESEDSIRQAGEL   75 (136)
T ss_pred             Cchhhhhcch----hhhhheeehhccCCCCceecchhhcccCCCcccCHHHHHHHHHHh-cCCCccchhhHHHHHhcCCC
Confidence            6777777774    47888888664 4455542 2233334444445555554200000 11222455667788889999


Q ss_pred             cceEEEEeC--C--eEEEEechHHHHHHHHcCCCeeeEEEEeCCHHHHhccc
Q 033111           79 VPIDVIEVD--G--NYYGFSGCHRYEAHQRLGLPTIRCKVRRGTKETLRHHL  126 (127)
Q Consensus        79 ~PIvV~~~~--g--~y~Ii~G~rRl~Aak~LG~~~Ip~iV~d~~d~e~r~y~  126 (127)
                      .||-|-..+  |  -|+-..|+||++|.+++|.++|.|.++..+.+++|.||
T Consensus        76 pPiDvl~v~~~G~~~YyaFgGCHRleAhdrlgrptiRcKlvk~T~~tLr~yl  127 (136)
T KOG3388|consen   76 PPIDVLEVDSEGGDYYYAFGGCHRLEAHDRLGRPTIRCKLVKGTPETLRYYL  127 (136)
T ss_pred             CCceEEEEecCCceEEEeeCcchhhHHHHhhCCCceeEEEecCCHHHHHHHh
Confidence            999887763  4  68899999999999999999999999999999999997

>COG5119 Uncharacterized protein, contains ParB-like nuclease domain [General function prediction only]

Probab=99.15  E-value=4e-11  Score=83.45  Aligned_cols=86  Identities=48%  Similarity=0.731  Sum_probs=72.4

Q ss_pred             CCcEEEeeCCCccCCCCCCCCCCHHHHHHHHH---------------HHHhcCcccceEEE--EeCCe--EEEEechHHH
Q 033111           39 GPVILELPLDKIRRPLMRTRANDQNKVKELMD---------------SIQQIGLQVPIDVI--EVDGN--YYGFSGCHRY   99 (127)
Q Consensus        39 ~~~i~~Ipi~~I~~~~~~rr~~~~~~i~~La~---------------SI~~~G~l~PIvV~--~~~g~--y~Ii~G~rRl   99 (127)
                      ...+++||+++|+.|..+  .+|+.+++.+++               ++.+-|.+.||-|-  +.+|.  |+-..|+||+
T Consensus         7 sv~~~EiplseirRPlpp--vlDp~Kv~am~~tM~g~t~~~sc~l~e~~a~aGelpPvDVL~~~v~Gq~~YyaFgGCHRl   84 (119)
T COG5119           7 SVNIQEIPLSEIRRPLPP--VLDPNKVNAMMETMTGKTPPASCGLTEEDAAAGELPPVDVLTFEVDGQPYYYAFGGCHRL   84 (119)
T ss_pred             CccceeccHHHhhcCCCC--CCCHHHHHHHHHHhcCCCCCccccchHhHHhcCCCCCceeEEEEecCcEEEEeeCccHHh
Confidence            367899999999986655  689999999955               45778999999887  55776  9999999999


Q ss_pred             HHHHHcCCCeeeEE-EEeCCHHHHhccc
Q 033111          100 EAHQRLGLPTIRCK-VRRGTKETLRHHL  126 (127)
Q Consensus       100 ~Aak~LG~~~Ip~i-V~d~~d~e~r~y~  126 (127)
                      +|+.++|.++|.|. +.......+|+||
T Consensus        85 ~A~dr~gret~~a~rvr~~P~t~lrmyL  112 (119)
T COG5119          85 EACDRAGRETILAKRVRCAPNTVLRMYL  112 (119)
T ss_pred             HHHHHHhHHHHHHHHHccChHHHHHHHH
Confidence            99999999999995 5566666799998

>PF08857 ParBc_2: Putative ParB-like nuclease; InterPro: IPR014956 These proteins are probably distantly related to IPR003115 from INTERPRO

Probab=97.01  E-value=0.0026  Score=47.89  Aligned_cols=76  Identities=18%  Similarity=0.252  Sum_probs=38.6

Q ss_pred             EEEeeCCCccCCCCCCCCCCH--HHHHHHHHHHHh--cCcc--cceEEEEe-CCeEEEEechHHHHHHHHcCCCe-eeEE
Q 033111           42 ILELPLDKIRRPLMRTRANDQ--NKVKELMDSIQQ--IGLQ--VPIDVIEV-DGNYYGFSGCHRYEAHQRLGLPT-IRCK  113 (127)
Q Consensus        42 i~~Ipi~~I~~~~~~rr~~~~--~~i~~La~SI~~--~G~l--~PIvV~~~-~g~y~Ii~G~rRl~Aak~LG~~~-Ip~i  113 (127)
                      +.+|+|++|+|. |.--.+++  .+...++...++  .-++  +||.|.-- +|.++++||||+.+|+..+|... |++.
T Consensus         2 l~~v~i~~LrPT-Q~~vG~~eV~~K~~~~~~~~~~~~~~~l~~~~vpvViGP~g~lyl~D~HH~~~Al~e~~~~~~v~v~   80 (163)
T PF08857_consen    2 LIEVPIADLRPT-QMTVGMDEVYYKLGRYRRDSKKKFDDYLEKHPVPVVIGPGGQLYLTDHHHLLRALWEMGVGGTVPVR   80 (163)
T ss_dssp             -EEEEGGGCB-S-BSEE-HHHHHHHHHHHHT---------TT-BEEEEEE-STT-EEE-S-HHHHHHHHHTT--E-EEEE
T ss_pred             ceEeEHHHcCCc-hHhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCCEEECCCCCeEEECCcHHHHHHHHcCCCceeEEE
Confidence            678999999983 22111111  222222222221  1123  45544433 56899999999999999999998 9998


Q ss_pred             EE-eCC
Q 033111          114 VR-RGT  118 (127)
Q Consensus       114 V~-d~~  118 (127)
                      |+ +++
T Consensus        81 V~~dls   86 (163)
T PF08857_consen   81 VVADLS   86 (163)
T ss_dssp             EEEE-T
T ss_pred             Eehhcc
Confidence            77 555

Suggesting these, uncharacterised proteins have a nuclease function. ; PDB: 2HWJ_E.

>PF03235 DUF262: Protein of unknown function DUF262; InterPro: IPR004919 This entry is found in prokaryotic proteins of unknown function

Probab=96.03  E-value=0.016  Score=42.98  Aligned_cols=53  Identities=21%  Similarity=0.169  Sum_probs=40.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHH--HhcCcccceEEEEe----CCeEEEEechHHHHHHHHc
Q 033111           53 PLMRTRANDQNKVKELMDSI--QQIGLQVPIDVIEV----DGNYYGFSGCHRYEAHQRL  105 (127)
Q Consensus        53 ~~~~rr~~~~~~i~~La~SI--~~~G~l~PIvV~~~----~g~y~Ii~G~rRl~Aak~L  105 (127)
                      .+|..-..+++++.+|.+||  ...=.+-+|++...    .+.|.|+||..|+.++..+
T Consensus        16 ~yQR~yvW~~~~~~~Li~si~~~~~~~iG~i~~~~~~~~~~~~~~iiDGQQRLTTl~l~   74 (221)
T PF03235_consen   16 DYQRDYVWDEEQIEELIDSILELRGYPIGSILLWSKNEDSNNTYEIIDGQQRLTTLYLF   74 (221)
T ss_pred             CCCCCCccCHHHHHHHHHHHHhccCCccceEEEEeccccccceeeecCccHHHHHHHHH
Confidence            34433367999999999999  76667788888321    3679999999999998654

>PF14072 DndB: DNA-sulfur modification-associated

Probab=95.42  E-value=0.12  Score=42.13  Aligned_cols=65  Identities=23%  Similarity=0.296  Sum_probs=45.3

Q ss_pred             CCCCHHHHHHHHHHHHhc--CcccceEEEEeC---------------------------CeEEEEechHHHHHHHHc---
Q 033111           58 RANDQNKVKELMDSIQQI--GLQVPIDVIEVD---------------------------GNYYGFSGCHRYEAHQRL---  105 (127)
Q Consensus        58 r~~~~~~i~~La~SI~~~--G~l~PIvV~~~~---------------------------g~y~Ii~G~rRl~Aak~L---  105 (127)
                      |.++...++++++-|.++  ..+.|+++.-.+                           ....|+||.||+.|.+.+   
T Consensus        43 R~l~~~rv~~I~~Yl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~L~i~~~~~~~iiDGQHRl~ai~~a~~~  122 (346)
T PF14072_consen   43 RPLNKSRVKEIAEYLLENEDNFFFPIIVASIDGPVEFEPEFPEEEEGDGDVGVLEIPMDASLWIIDGQHRLAAIKEALEE  122 (346)
T ss_pred             CCCCHHHHHHHHHHHHcCCCCeeccceeEeecCcccccccccccccCCCceEEEEECCCCeEEeeccHHHHHHHHHHHHh
Confidence            467888999999999653  445444432111                           147899999999999877   


Q ss_pred             ----CCCeeeEEEE-eCCHHHH
Q 033111          106 ----GLPTIRCKVR-RGTKETL  122 (127)
Q Consensus       106 ----G~~~Ip~iV~-d~~d~e~  122 (127)
                          +-.+|||.+. +.+.++.
T Consensus       123 ~~~l~~~~i~V~~~~~~~~~~~  144 (346)
T PF14072_consen  123 DPELGDEEIPVVIFIDLDLEEQ  144 (346)
T ss_pred             CccccCceeEEEEEcCCCHHHH
Confidence                2357999988 5555543

>PF06245 DUF1015: Protein of unknown function (DUF1015); InterPro: IPR008323 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=94.23  E-value=0.082  Score=44.75  Aligned_cols=52  Identities=15%  Similarity=0.156  Sum_probs=34.9

Q ss_pred             CHHHHHHHHHHHHhcCcccceEEEEeCCeEEEEechHHHHHHHHcC---------------CCeeeEEEEeCCHHHHhc
Q 033111           61 DQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLG---------------LPTIRCKVRRGTKETLRH  124 (127)
Q Consensus        61 ~~~~i~~La~SI~~~G~l~PIvV~~~~g~y~Ii~G~rRl~Aak~LG---------------~~~Ip~iV~d~~d~e~r~  124 (127)
                      +++.++++.+.+.+.+            ..+|.|||||++++..+.               +..+-+.+.+.+|..+.+
T Consensus       187 d~~~i~~i~~~~~~~~------------~lyIADGHHR~atA~~~~~~~~~~~~~~~~~~p~~y~l~~l~~~~d~gL~I  253 (416)
T PF06245_consen  187 DPAVIAKIQEAFEADK------------PLYIADGHHRYATALAYREERKEQNPEHTGDEPYNYFLMYLVNFPDPGLRI  253 (416)
T ss_pred             CHHHHHHHHHHHhhcC------------ceEEecCcHHHHHHHHHHHHHHhhCCCCCCCcCccEEEEEEeccCCCCCEE
Confidence            4455566665553322            356889999999998873               345777787777766654

>TIGR03187 DGQHR DGQHR domain

Probab=89.23  E-value=0.71  Score=36.97  Aligned_cols=59  Identities=20%  Similarity=0.156  Sum_probs=40.5

Q ss_pred             CCCCHHHHHHHHHHHHh-cCcc-cceEEEEe---------------------CCeEEEEechHHHHHHHHcCC------C
Q 033111           58 RANDQNKVKELMDSIQQ-IGLQ-VPIDVIEV---------------------DGNYYGFSGCHRYEAHQRLGL------P  108 (127)
Q Consensus        58 r~~~~~~i~~La~SI~~-~G~l-~PIvV~~~---------------------~g~y~Ii~G~rRl~Aak~LG~------~  108 (127)
                      |.++...++++++=|.. .+.+ .+|++.-.                     +....|+||.||+.|.+.+-.      .
T Consensus        40 R~l~~~Rv~~I~~Yi~~~~~~~~~sIi~~i~~~~~f~~~~~~~~~g~L~Ip~~~~~~iiDGQHRl~gi~~a~~~~~~l~~  119 (271)
T TIGR03187        40 RPLNKSRIKEIARYIDNPDAYIPPAITLSIDGSVEFEPLEGKNVVGTLEIPMDASAWIVDGQHRLAAIEDALKESPELAE  119 (271)
T ss_pred             cchhHHHHHHHHHHHcCCCCEecccEEEEecCCceEEecCCCCcceEEEECCCCcEEEeccHHHHHHHHHHHhcCcccCc
Confidence            35677888888888853 3444 44555322                     125778999999999876554      4


Q ss_pred             eeeEEEEe
Q 033111          109 TIRCKVRR  116 (127)
Q Consensus       109 ~Ip~iV~d  116 (127)
                      +|||.+..
T Consensus       120 ~i~V~~~~  127 (271)
T TIGR03187       120 TIPVVFFI  127 (271)
T ss_pred             eEEEEEEe
Confidence            59999773

This highly divergent, uncharacterized domain has several absolutely conserved residues, including a QR pair and FxxxN motif. Its most striking feature, however, is a near invariant pentapeptide motif DGQHR. While the function is unknown, members occur in contexts that suggest extensive lateral gene transfer (LGT), and several have been annotated as putative bacteriophage proteins. The region described by this model is about 280 amino acids in length; additional sequences show local sequence similarity.

>TIGR03233 DNA_S_dndB DNA sulfur modification protein DndB

Probab=85.23  E-value=1.6  Score=36.72  Aligned_cols=58  Identities=22%  Similarity=0.314  Sum_probs=38.4

Q ss_pred             CCCCHHHHHHHHHHHHh--cCccc-ceEE------------------------EEeCCeEEEEechHHHHHHHH------
Q 033111           58 RANDQNKVKELMDSIQQ--IGLQV-PIDV------------------------IEVDGNYYGFSGCHRYEAHQR------  104 (127)
Q Consensus        58 r~~~~~~i~~La~SI~~--~G~l~-PIvV------------------------~~~~g~y~Ii~G~rRl~Aak~------  104 (127)
                      |.+++..+.++++=|.+  ..++. +|++                        .+.+....|+||.||..|...      
T Consensus        47 R~ln~~Ri~eI~~Yil~n~~~~~fsaItasid~~v~f~~~~~~~~~~~~G~L~Ip~d~~~~I~DGQHR~~aI~~al~~~p  126 (355)
T TIGR03233        47 RILNEERIPEIANYILENRDSYVFSALTASIDGDIEFEPVGEDGSAQRLGTLRIDMDAKFLINDGQHRRAAIEEALKEDP  126 (355)
T ss_pred             ccCCHhhHHHHHHHHHcCCcccccceEEEEEcCCcceeecccccccccccEEEeCCCceEEEeccHHHHHHHHHHHhhCc
Confidence            35677888888888843  33332 2222                        111235789999999999964      


Q ss_pred             -cCCCeeeEEEE
Q 033111          105 -LGLPTIRCKVR  115 (127)
Q Consensus       105 -LG~~~Ip~iV~  115 (127)
                       +|-.+|||.+.
T Consensus       127 el~~~~I~Vv~f  138 (355)
T TIGR03233       127 ELGDETIAVVFF  138 (355)
T ss_pred             ccCCCceeEEEE
Confidence             44578999976

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	127
1xw3_A	110	Crystal Structure Of Human Sulfiredoxin (srx) Lengt		9e-08
2rii_X	110	Crystal Structure Of Human Peroxiredoxin I In Compl		9e-08
1yzs_A	121	Solution Structure Of Human Sulfiredoxin (Srx) Leng		2e-07
3hy2_X	110	Crystal Structure Of Sulfiredoxin In Complex With P		9e-07
3cyi_A	110	Crystal Structure Of Human Sulfiredoxin (Srx) In Co		1e-06
1xw4_X	110	Crystal Structure Of Human Sulfiredoxin (Srx) In Co		1e-06

>pdb|1XW3|A Chain A, Crystal Structure Of Human Sulfiredoxin (srx) Length = 110

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 45  LPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVP-IDVIEVDGN-----YYGFSGCHR 98
           +PL  + RPL      D  KV+ L+D+I++    VP IDV+ + G      +Y F GCHR
Sbjct: 17  VPLSVLIRPLPSVL--DPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHR 74
Query: 99  YEAHQRLGLPTIRCKVRRGTKETLRHHL 126
           Y A+Q+L   TI  K+ + T   LR +L
Sbjct: 75  YAAYQQLQRETIPAKLVQSTLSDLRVYL 102

>pdb|2RII|X Chain X, Crystal Structure Of Human Peroxiredoxin I In Complex With Sulfiredoxin Length = 110

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 45  LPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVP-IDVIEVDGN-----YYGFSGCHR 98
           +PL  + RPL      D  KV+ L+D+I++    VP IDV+ + G      +Y F GCHR
Sbjct: 17  VPLSVLIRPLPSVL--DPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHR 74
Query: 99  YEAHQRLGLPTIRCKVRRGTKETLRHHL 126
           Y A+Q+L   TI  K+ + T   LR +L
Sbjct: 75  YAAYQQLQRETIPAKLVQSTLSDLRVYL 102

>pdb|1YZS|A Chain A, Solution Structure Of Human Sulfiredoxin (Srx) Length = 121

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 45  LPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVP-IDVIEVDGN-----YYGFSGCHR 98
           +PL  + RPL      D  KV+ L+D+I++    VP IDV+ + G      +Y F GCHR
Sbjct: 28  VPLSVLIRPLPSVL--DPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHR 85
Query: 99  YEAHQRLGLPTIRCKVRRGTKETLRHHL 126
           Y A+Q+L   TI  K+ + T   LR +L
Sbjct: 86  YAAYQQLQRETIPAKLVQSTLSDLRVYL 113

>pdb|3HY2|X Chain X, Crystal Structure Of Sulfiredoxin In Complex With Peroxiredoxin I And Atp:mg2+ Length = 110

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 45  LPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVP-IDVIEVDGN-----YYGFSGCHR 98
           +PL  + RPL      D  KV+ L+D+I++    VP IDV+ + G      +Y F G HR
Sbjct: 17  VPLSVLIRPLPSVL--DPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGAHR 74
Query: 99  YEAHQRLGLPTIRCKVRRGTKETLRHHL 126
           Y A+Q+L   TI  K+ + T   LR +L
Sbjct: 75  YAAYQQLQRETIPAKLVQSTLSDLRVYL 102

>pdb|3CYI|A Chain A, Crystal Structure Of Human Sulfiredoxin (Srx) In Complex With Atp:mg2+ Length = 110

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 45  LPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVP-IDVIEVDGN-----YYGFSGCHR 98
           +PL  + RPL      D  KV+ L+D+I++    VP IDV+ + G      +Y F G HR
Sbjct: 17  VPLSVLIRPLPSVL--DPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGSHR 74
Query: 99  YEAHQRLGLPTIRCKVRRGTKETLRHHL 126
           Y A+Q+L   TI  K+ + T   LR +L
Sbjct: 75  YAAYQQLQRETIPAKLVQSTLSDLRVYL 102

>pdb|1XW4|X Chain X, Crystal Structure Of Human Sulfiredoxin (Srx) In Complex With Adp Length = 110

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 45  LPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVP-IDVIEVDGN-----YYGFSGCHR 98
           +PL  + RPL      D  KV+ L+D+I++    VP IDV+ + G      +Y F G HR
Sbjct: 17  VPLSVLIRPLPSVL--DPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGXHR 74
Query: 99  YEAHQRLGLPTIRCKVRRGTKETLRHHL 126
           Y A+Q+L   TI  K+ + T   LR +L
Sbjct: 75  YAAYQQLQRETIPAKLVQSTLSDLRVYL 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	127
1yzs_A	121	Sulfiredoxin; PARB domain fold, oxidoreductase; NM	7e-36
1xw3_A	110	Sulfiredoxin; retroreduction, sulfinic acid, perox	1e-32
1vk1_A	242	Conserved hypothetical protein; reductive methylat	3e-06
1vz0_A	230	PARB, chromosome partitioning protein PARB; nuclea	2e-04

>1yzs_A Sulfiredoxin; PARB domain fold, oxidoreductase; NMR {Homo sapiens} SCOP: d.268.1.4 PDB: 2b6f_A* Length = 121

 Score =  118 bits (297), Expect = 7e-36
 Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 8/111 (7%)

Query: 22  SASSNGNPPGSSESRGSGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQV-P 80
               +G   G S   G    +  +PL  + RPL      D  KV+ L+D+I++    V P
Sbjct: 5   GPGPSGGAQGGSIHSGRIAAVHNVPLSVLIRPLPSV--LDPAKVQSLVDTIREDPDSVPP 62

Query: 81  IDVIEVDGN-----YYGFSGCHRYEAHQRLGLPTIRCKVRRGTKETLRHHL 126
           IDV+ + G      +Y F GCHRY A+Q+L   TI  K+ + T   LR +L
Sbjct: 63  IDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQRETIPAKLVQSTLSDLRVYL 113

>1xw3_A Sulfiredoxin; retroreduction, sulfinic acid, peroxiredoxin, ATP, oxidoreductase; 1.65A {Homo sapiens} SCOP: d.268.1.4 PDB: 1xw4_X* 3cyi_A* 2rii_X 3hy2_X* Length = 110

 Score =  110 bits (275), Expect = 1e-32
 Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 9/104 (8%)

Query: 29  PPGSSESRGSGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQV-PIDVIEVD 87
           P  S  S     V   +PL  + RPL      D  KV+ L+D+I++    V PIDV+ + 
Sbjct: 2   PHMSIHSGRIAAVH-NVPLSVLIRPLPSV--LDPAKVQSLVDTIREDPDSVPPIDVLWIK 58

Query: 88  GN-----YYGFSGCHRYEAHQRLGLPTIRCKVRRGTKETLRHHL 126
           G      +Y F GCHRY A+Q+L   TI  K+ + T   LR +L
Sbjct: 59  GAQGGDYFYSFGGCHRYAAYQQLQRETIPAKLVQSTLSDLRVYL 102

>1vk1_A Conserved hypothetical protein; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 1.20A {Pyrococcus furiosus} SCOP: d.268.1.2 Length = 242

 Score = 43.7 bits (102), Expect = 3e-06
 Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 7/77 (9%)

Query: 42  ILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIG-LQVPIDVIEVDGNYYGF--SGCHR 98
            + + LDK    +       Q ++++ ++S+   G    P+ + ++ G        G HR
Sbjct: 18  YVFIELDK----MXPHEQLVQRELEDFIESVTGSGIFWKPMLLAKIPGTDEYLIVDGHHR 73

Query: 99  YEAHQRLGLPTIRCKVR 115
           +   Q+LG       + 
Sbjct: 74  WAGLQKLGAKRAPSVIL 90

>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1 Length = 230

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 7/82 (8%)

Query: 38  SGPVILELPLDKIRR----PLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGF 93
           +G  ++ LPL  IR     P  R R   +  +KEL DSI++ GL  P+ V      Y   
Sbjct: 19  TGAGVVRLPLASIRPNPRQP--RKRF-AEESLKELADSIREKGLLQPLLVRPQGDGYELV 75

Query: 94  SGCHRYEAHQRLGLPTIRCKVR 115
           +G  RY A    GL  +   V+
Sbjct: 76  AGERRYRAALMAGLQEVPAVVK 97

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	127
1xw3_A	110	Sulfiredoxin; retroreduction, sulfinic acid, perox	99.9
1yzs_A	121	Sulfiredoxin; PARB domain fold, oxidoreductase; NM	99.87
1vz0_A	230	PARB, chromosome partitioning protein PARB; nuclea	99.87
1vk1_A	242	Conserved hypothetical protein; reductive methylat	99.71
2hwj_A	205	AGR_C_2837P, hypothetical protein ATU1540; structu	98.38

>1xw3_A Sulfiredoxin; retroreduction, sulfinic acid, peroxiredoxin, ATP, oxidoreductase; 1.65A {Homo sapiens} SCOP: d.268.1.4 PDB: 1xw4_X* 3cyi_A* 2rii_X 3hy2_X*

Probab=99.90  E-value=6.4e-24  Score=148.94  Aligned_cols=86  Identities=38%  Similarity=0.586  Sum_probs=78.0

Q ss_pred             CCcEEEeeCCCccCCCCCCCCCCHHHHHHHHHHHHhcCcc-cceEEEEeC----C-eEEEEechHHHHHHHHcCCCeeeE
Q 033111           39 GPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQ-VPIDVIEVD----G-NYYGFSGCHRYEAHQRLGLPTIRC  112 (127)
Q Consensus        39 ~~~i~~Ipi~~I~~~~~~rr~~~~~~i~~La~SI~~~G~l-~PIvV~~~~----g-~y~Ii~G~rRl~Aak~LG~~~Ip~  112 (127)
                      -.++.+||+++|..+.++  .+|++++++|++||+++|+. +||.|++.+    | .|++++|+|||+|++.||+++|||
T Consensus        11 ~~~v~~IPi~~I~~p~~~--~~d~~kv~eL~~SI~~~Gl~l~PI~Vr~~~g~~~~~~Y~li~G~hRl~A~k~Lg~~tIpA   88 (110)
T 1xw3_A           11 IAAVHNVPLSVLIRPLPS--VLDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQRETIPA   88 (110)
T ss_dssp             CEEEEEEEGGGEECCSCC--CCCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEECCSCHHHHHHHHHTTCSEEEE
T ss_pred             CceEEEeCHHHccCCCCC--ccCHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcEEEEcchHHHHHHHHcCCCcCCE
Confidence            456889999999975543  89999999999999999997 999999852    2 499999999999999999999999


Q ss_pred             EEEeCCHHHHhccc
Q 033111          113 KVRRGTKETLRHHL  126 (127)
Q Consensus       113 iV~d~~d~e~r~y~  126 (127)
                      +|++.+++++++||
T Consensus        89 ~V~~~~~~~l~~yl  102 (110)
T 1xw3_A           89 KLVQSTLSDLRVYL  102 (110)
T ss_dssp             EEEEECHHHHHHHH
T ss_pred             EEEcCCHHHHHHHh
Confidence            99999999999998

>1yzs_A Sulfiredoxin; PARB domain fold, oxidoreductase; NMR {Homo sapiens} SCOP: d.268.1.4 PDB: 2b6f_A*

Probab=99.87  E-value=1.3e-21  Score=139.23  Aligned_cols=88  Identities=39%  Similarity=0.602  Sum_probs=79.2

Q ss_pred             CCCCcEEEeeCCCccCCCCCCCCCCHHHHHHHHHHHHhcCcc-cceEEEEeC----C-eEEEEechHHHHHHHHcCCCee
Q 033111           37 GSGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQ-VPIDVIEVD----G-NYYGFSGCHRYEAHQRLGLPTI  110 (127)
Q Consensus        37 ~~~~~i~~Ipi~~I~~~~~~rr~~~~~~i~~La~SI~~~G~l-~PIvV~~~~----g-~y~Ii~G~rRl~Aak~LG~~~I  110 (127)
                      ..-..+.+||+++|+.+. + +.+|++++++|++||++.|+. +||.|.+.+    | .|.+++|+|||+|++.||+++|
T Consensus        20 ~~~~~i~~IPl~~I~~p~-~-r~~d~~kv~eL~eSI~~~Gl~~~PI~V~~~~g~~gg~~Y~l~~G~hRleA~k~LG~~tI   97 (121)
T 1yzs_A           20 GRIAAVHNVPLSVLIRPL-P-SVLDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQRETI   97 (121)
T ss_dssp             SCCCCEEEEEGGGEECCC-C-CCCCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEECCSCHHHHHHHHHTTCSEE
T ss_pred             CCcceEEEeeHHHeeCCC-C-CcCCHHHHHHHHHHHHhcCCCCCCeEEEEeccCCCCceEEEEecchHHHHHHHcCcCcc
Confidence            455678999999999854 4 379999999999999999997 999998752    2 3999999999999999999999


Q ss_pred             eEEEEeCCHHHHhccc
Q 033111          111 RCKVRRGTKETLRHHL  126 (127)
Q Consensus       111 p~iV~d~~d~e~r~y~  126 (127)
                      ||+|++.+++++++||
T Consensus        98 ~A~vv~~t~~~l~~yl  113 (121)
T 1yzs_A           98 PAKLVQSTLSDLRVYL  113 (121)
T ss_dssp             EEEEEECCHHHHHHHH
T ss_pred             cEEEEcCCHHHHHHHh
Confidence            9999999999999998

>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1

Probab=99.87  E-value=1.2e-22  Score=157.29  Aligned_cols=85  Identities=29%  Similarity=0.380  Sum_probs=77.9

Q ss_pred             CcEEEeeCCCccC-CCCCCCCCCHHHHHHHHHHHHhcCcccceEEEEeCCeEEEEechHHHHHHHHcCCCeeeEEEEeCC
Q 033111           40 PVILELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLGLPTIRCKVRRGT  118 (127)
Q Consensus        40 ~~i~~Ipi~~I~~-~~~~rr~~~~~~i~~La~SI~~~G~l~PIvV~~~~g~y~Ii~G~rRl~Aak~LG~~~Ip~iV~d~~  118 (127)
                      ..+..||+++|.+ +.|+|+.++++.+++|++||+++|+++||+|++.+|+|+|++|||||+|++.+|+++|||+|.+.+
T Consensus        21 ~~i~~i~i~~I~~~~~npR~~~~~~~~~eLa~SI~~~G~l~PI~V~~~~g~y~Ii~G~rR~~Aa~~lg~~~Ip~iv~~~~  100 (230)
T 1vz0_A           21 AGVVRLPLASIRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQGDGYELVAGERRYRAALMAGLQEVPAVVKDLT  100 (230)
T ss_dssp             --CEEEEGGGEECCCCCHHHHHHHHHHHHHHHHHHHHCCSSCEEEEEETTEEEEEECHHHHHHHHHHTCSEEEEEECCCC
T ss_pred             CceEEEEHHHcccCCCCCCccCCHHHHHHHHHHHHHcCceeCeEEEEeCCEEEEEeCHHHHHHHHHcCCceeeEEEEeCC
Confidence            3689999999999 788887789999999999999999999999999878899999999999999999999999999999


Q ss_pred             HHHHhc
Q 033111          119 KETLRH  124 (127)
Q Consensus       119 d~e~r~  124 (127)
                      ++++..
T Consensus       101 d~ea~~  106 (230)
T 1vz0_A          101 DREALE  106 (230)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988754

>1vk1_A Conserved hypothetical protein; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 1.20A {Pyrococcus furiosus} SCOP: d.268.1.2

Probab=99.71  E-value=5.6e-18  Score=132.20  Aligned_cols=83  Identities=18%  Similarity=0.267  Sum_probs=72.5

Q ss_pred             CCcEEEeeCCCccCCCCCCCCCCHHHHHHHHHHHHhcCcc-cceEEEEe--CCeEEEEechHHHHHHHHcCCCeeeEEEE
Q 033111           39 GPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQ-VPIDVIEV--DGNYYGFSGCHRYEAHQRLGLPTIRCKVR  115 (127)
Q Consensus        39 ~~~i~~Ipi~~I~~~~~~rr~~~~~~i~~La~SI~~~G~l-~PIvV~~~--~g~y~Ii~G~rRl~Aak~LG~~~Ip~iV~  115 (127)
                      ...+..|+++.|++..    .++++++++|++||+++|++ +||+|++.  .|.|+|+||||||+||+.+|+++|||+++
T Consensus        15 ~~~i~~i~~~~i~p~e----~~~~~~~~~l~~sI~~~G~~~~PIiV~~~~~~~~~~IidGhhR~~AA~~lGl~~iP~iv~   90 (242)
T 1vk1_A           15 KVEYVFIELDKMXPHE----QLVQRELEDFIESVTGSGIFWKPMLLAKIPGTDEYLIVDGHHRWAGLQKLGAKRAPSVIL   90 (242)
T ss_dssp             CCCCEEEEGGGEECSB----CCCHHHHHHHHHHHHHHCEECSCEEEEECTTSSCEEEEECHHHHHHHHHHTCCEEEEEEE
T ss_pred             cceEEEEehhhcCCCc----CCCHHHHHHHHHHHHHhCCccCCEEEEecCCCCcEEEEeCHHHHHHHHHCCCCcceEEEE
Confidence            3457788888888753    36889999999999999998 99999986  35799999999999999999999999999


Q ss_pred             eCCHHHHhcc
Q 033111          116 RGTKETLRHH  125 (127)
Q Consensus       116 d~~d~e~r~y  125 (127)
                      +.+++++.++
T Consensus        91 ~~~d~~~~i~  100 (242)
T 1vk1_A           91 DYFDEGVKVY  100 (242)
T ss_dssp             CTTSTTCEEE
T ss_pred             ECCchhheee
Confidence            9998887653

>2hwj_A AGR_C_2837P, hypothetical protein ATU1540; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.61A {Agrobacterium tumefaciens str} SCOP: d.268.1.3

Probab=98.38  E-value=1.3e-06  Score=66.72  Aligned_cols=79  Identities=14%  Similarity=0.121  Sum_probs=54.6

Q ss_pred             CCcEEEeeCCCccCCCCCCCCCCHHHHHHHHHHHHh------cCcc--cceEEEE-eCCeEEEEechHHHHHHHHcCCCe
Q 033111           39 GPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQ------IGLQ--VPIDVIE-VDGNYYGFSGCHRYEAHQRLGLPT  109 (127)
Q Consensus        39 ~~~i~~Ipi~~I~~~~~~rr~~~~~~i~~La~SI~~------~G~l--~PIvV~~-~~g~y~Ii~G~rRl~Aak~LG~~~  109 (127)
                      ...+.+++|++|+|...   .+.-.+++.=...++.      ..++  .||.|.. -+|.++|+|||||.+|+..+|.++
T Consensus         6 ~~~l~~v~I~~L~PTQ~---~VG~~ev~~K~~~~~~~~~~~~~~~l~~~pipVVigp~g~lyl~DgHH~~~Al~~~G~~~   82 (205)
T 2hwj_A            6 EPRLSRIAIDKLRPTQI---AVGFREVELKRKEWRETRKKDGDDFLGNHIVPVVAGPKDRAYLIDHHHLVLALSKEGVEH   82 (205)
T ss_dssp             SCBEEEEEGGGCBCSBS---EECHHHHHHHHHHHHTCC-----CCTTCBEEEEEECSTTCEEECSCHHHHHHHHHTTCCE
T ss_pred             CCceeEEEHHHccCcch---hhhHHHHHHHHHHHHhhhHHHHHHHhhcCCceEEECCCCCEEEECChHHHHHHHHcCCCe
Confidence            45688999999998432   2444444444444431      1122  4884444 468999999999999999999999


Q ss_pred             eeEEEE-eCCHH
Q 033111          110 IRCKVR-RGTKE  120 (127)
Q Consensus       110 Ip~iV~-d~~d~  120 (127)
                      |++.|+ ++++.
T Consensus        83 v~v~Vi~dls~l   94 (205)
T 2hwj_A           83 VLTSEVAKFSHL   94 (205)
T ss_dssp             EEEEEEEECTTS
T ss_pred             EEEEEeeccCCC
Confidence            999987 55443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	127
d1xw3a1	110	d.268.1.4 (A:28-137) Sulfiredoxin {Human (Homo sap	1e-23
d1vk1a_	232	d.268.1.2 (A:) Hypothetical protein PF0380 {Pyroco	4e-11
d1vz0a2	93	d.268.1.1 (A:23-115) Putative partitioning protein	2e-09

>d1xw3a1 d.268.1.4 (A:28-137) Sulfiredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: Alpha and beta proteins (a+b)
fold: ParB/Sulfiredoxin
superfamily: ParB/Sulfiredoxin
family: Sulfiredoxin-like
domain: Sulfiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.7 bits (212), Expect = 1e-23
 Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 8/103 (7%)

Query: 30  PGSSESRGSGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEV--- 86
           P  S   G    +  +PL  + RPL      D  KV+ L+D+I++    VP   +     
Sbjct: 2   PHMSIHSGRIAAVHNVPLSVLIRPLPSVL--DPAKVQSLVDTIREDPDSVPPIDVLWIKG 59

Query: 87  ---DGNYYGFSGCHRYEAHQRLGLPTIRCKVRRGTKETLRHHL 126
                 +Y F GCHRY A+Q+L   TI  K+ + T   LR +L
Sbjct: 60  AQGGDYFYSFGGCHRYAAYQQLQRETIPAKLVQSTLSDLRVYL 102

>d1vk1a_ d.268.1.2 (A:) Hypothetical protein PF0380 {Pyrococcus furiosus [TaxId: 2261]} Length = 232

class: Alpha and beta proteins (a+b)
fold: ParB/Sulfiredoxin
superfamily: ParB/Sulfiredoxin
family: Hypothetical protein PF0380
domain: Hypothetical protein PF0380
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 55.8 bits (134), Expect = 4e-11
 Identities = 12/86 (13%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 42  ILELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPIDVI---EVDGNYYGFSGCH 97
           + ++    I    +       Q ++++ ++S+   G+     ++        Y    G H
Sbjct: 3   VKKVEYVFIELDKMKPHEQLVQRELEDFIESVTGSGIFWKPMLLAKIPGTDEYLIVDGHH 62

Query: 98  RYEAHQRLGLPTIRCKVRRGTKETLR 123
           R+   Q+LG       +     E ++
Sbjct: 63  RWAGLQKLGAKRAPSVILDYFDEGVK 88

>d1vz0a2 d.268.1.1 (A:23-115) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]} Length = 93

class: Alpha and beta proteins (a+b)
fold: ParB/Sulfiredoxin
superfamily: ParB/Sulfiredoxin
family: ParB-like nuclease domain
domain: Putative partitioning protein ParB/Spo0J
species: Thermus thermophilus [TaxId: 274]

 Score = 48.9 bits (116), Expect = 2e-09
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%)

Query: 42  ILELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYE 100
           ++ LPL  IR  P    +   +  +KEL DSI++ GL  P+ V      Y   +G  RY 
Sbjct: 1   VVRLPLASIRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQGDGYELVAGERRYR 60

Query: 101 AHQRLGLPTIRCKVRRGTKETLR 123
           A    GL  +   V+  T     
Sbjct: 61  AALMAGLQEVPAVVKDLTDREAL 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	127
d1vz0a2	93	Putative partitioning protein ParB/Spo0J {Thermus	99.93
d1xw3a1	110	Sulfiredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1vk1a_	232	Hypothetical protein PF0380 {Pyrococcus furiosus [	99.78
d2hwja1	201	Hypothetical protein Atu1540 {Agrobacterium tumefa	97.38

>d1vz0a2 d.268.1.1 (A:23-115) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: ParB/Sulfiredoxin
superfamily: ParB/Sulfiredoxin
family: ParB-like nuclease domain
domain: Putative partitioning protein ParB/Spo0J
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=2.9e-27  Score=159.13  Aligned_cols=84  Identities=30%  Similarity=0.389  Sum_probs=78.2

Q ss_pred             EEEeeCCCccC-CCCCCCCCCHHHHHHHHHHHHhcCcccceEEEEeCCeEEEEechHHHHHHHHcCCCeeeEEEEeCCHH
Q 033111           42 ILELPLDKIRR-PLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEVDGNYYGFSGCHRYEAHQRLGLPTIRCKVRRGTKE  120 (127)
Q Consensus        42 i~~Ipi~~I~~-~~~~rr~~~~~~i~~La~SI~~~G~l~PIvV~~~~g~y~Ii~G~rRl~Aak~LG~~~Ip~iV~d~~d~  120 (127)
                      |++||+++|++ +.|+|+.++++++++|++||+++|+++||+|++.+++|+|++|||||+||+.+|+++|||+|.+.+|+
T Consensus         1 I~~Ipi~~i~~~p~npR~~~~~~~i~~L~~sI~~~G~~~Pi~V~~~~~~y~ii~G~rR~~A~k~lg~~~ip~~v~~~~d~   80 (93)
T d1vz0a2           1 VVRLPLASIRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQGDGYELVAGERRYRAALMAGLQEVPAVVKDLTDR   80 (93)
T ss_dssp             CEEEEGGGEECCCCCHHHHHHHHHHHHHHHHHHHHCCSSCEEEEEETTEEEEEECHHHHHHHHHHTCSEEEEEECCCCHH
T ss_pred             CeEEEHHHCccCCCCCCCcCCHHHHHHHHHHHHhCCCCceeEEEEcCCceEEEeehhHHHHHHhcCCceeeEEEEeCCHH
Confidence            57899999999 77887778999999999999999999999999998889999999999999999999999999999999


Q ss_pred             HHhcc
Q 033111          121 TLRHH  125 (127)
Q Consensus       121 e~r~y  125 (127)
                      ++..+
T Consensus        81 ~a~~~   85 (93)
T d1vz0a2          81 EALEL   85 (93)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654

>d1xw3a1 d.268.1.4 (A:28-137) Sulfiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: ParB/Sulfiredoxin
superfamily: ParB/Sulfiredoxin
family: Sulfiredoxin-like
domain: Sulfiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.2e-24  Score=146.92  Aligned_cols=88  Identities=38%  Similarity=0.598  Sum_probs=75.8

Q ss_pred             CCCCcEEEeeCCCccCCCCCCCCCCHHHHHHHHHHHHhcCcccc-eEEEEe----C-CeEEEEechHHHHHHHHcCCCee
Q 033111           37 GSGPVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVP-IDVIEV----D-GNYYGFSGCHRYEAHQRLGLPTI  110 (127)
Q Consensus        37 ~~~~~i~~Ipi~~I~~~~~~rr~~~~~~i~~La~SI~~~G~l~P-IvV~~~----~-g~y~Ii~G~rRl~Aak~LG~~~I  110 (127)
                      +...++.+||+++|+.+ ++| .++++++++|++||++.|+++| |+|.+.    + ++|++++|||||+|++.||+++|
T Consensus         9 ~~~~~i~~IPl~~I~~p-~~r-~~d~~~i~eL~~SI~~~G~~~ppivV~~~~~~~~~~~Y~li~G~rR~~A~k~LG~~~I   86 (110)
T d1xw3a1           9 GRIAAVHNVPLSVLIRP-LPS-VLDPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGGCHRYAAYQQLQRETI   86 (110)
T ss_dssp             CCCEEEEEEEGGGEECC-SCC-CCCHHHHHHHHHHHHHCGGGSCCEEEEEEECTTSCEEEECCSCHHHHHHHHHTTCSEE
T ss_pred             CCcceEEEecHHHcCCC-CCC-CCCHHHHHHHHHHHHhhhcccCcceEEeecccCCCCcEEEEecHHHHHHHHHcCCCee
Confidence            45567999999999864 444 5899999999999999998765 555543    2 36999999999999999999999


Q ss_pred             eEEEEeCCHHHHhccc
Q 033111          111 RCKVRRGTKETLRHHL  126 (127)
Q Consensus       111 p~iV~d~~d~e~r~y~  126 (127)
                      ||+|++.+++++++||
T Consensus        87 pa~V~~~~~~~l~lyl  102 (110)
T d1xw3a1          87 PAKLVQSTLSDLRVYL  102 (110)
T ss_dssp             EEEEEEECHHHHHHHH
T ss_pred             eEEEEECCHHHHHHHH
Confidence            9999999999999997

>d1vk1a_ d.268.1.2 (A:) Hypothetical protein PF0380 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: ParB/Sulfiredoxin
superfamily: ParB/Sulfiredoxin
family: Hypothetical protein PF0380
domain: Hypothetical protein PF0380
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.78  E-value=8.7e-20  Score=139.92  Aligned_cols=80  Identities=18%  Similarity=0.262  Sum_probs=65.9

Q ss_pred             cEEEeeCCCccCCCCCCCCCCHHHHHHHHHHHHhcCcccceEEEEe---CCeEEEEechHHHHHHHHcCCCeeeEEEEeC
Q 033111           41 VILELPLDKIRRPLMRTRANDQNKVKELMDSIQQIGLQVPIDVIEV---DGNYYGFSGCHRYEAHQRLGLPTIRCKVRRG  117 (127)
Q Consensus        41 ~i~~Ipi~~I~~~~~~rr~~~~~~i~~La~SI~~~G~l~PIvV~~~---~g~y~Ii~G~rRl~Aak~LG~~~Ip~iV~d~  117 (127)
                      ++..|+++.+.|    |..++++.+++|++||+++|+++|++|...   +|.|+|++|||||+||+.||+++|||+++|+
T Consensus         7 e~~~i~~~~l~P----~~~~~~~~l~~L~~sI~~~G~~~ppivv~~~~~~~~y~Ii~G~~R~~Aak~lG~~~IP~iv~d~   82 (232)
T d1vk1a_           7 EYVFIELDKMKP----HEQLVQRELEDFIESVTGSGIFWKPMLLAKIPGTDEYLIVDGHHRWAGLQKLGAKRAPSVILDY   82 (232)
T ss_dssp             CCEEEEGGGEEC----SBCCCHHHHHHHHHHHHHHCEECSCEEEEECTTSSCEEEEECHHHHHHHHHHTCCEEEEEEECT
T ss_pred             ceeEeccccCCC----CccCCHHHHHHHHHHHHHcCCCCCCEEEeecCCCCCEEEEecHHHHHHHHHCCCCccCEEEEeC
Confidence            345566666554    456899999999999999999876666544   3679999999999999999999999999999


Q ss_pred             CHHHHhc
Q 033111          118 TKETLRH  124 (127)
Q Consensus       118 ~d~e~r~  124 (127)
                      +|+++.+
T Consensus        83 ~de~~~~   89 (232)
T d1vk1a_          83 FDEGVKV   89 (232)
T ss_dssp             TSTTCEE
T ss_pred             CCHHHHH
Confidence            8877654

>d2hwja1 d.268.1.3 (A:4-204) Hypothetical protein Atu1540 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: ParB/Sulfiredoxin
superfamily: ParB/Sulfiredoxin
family: Atu1540-like
domain: Hypothetical protein Atu1540
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.38  E-value=0.00044  Score=50.73  Aligned_cols=77  Identities=13%  Similarity=0.134  Sum_probs=51.4

Q ss_pred             CcEEEeeCCCccCCCCCCCCCCHHHHHHHHHHHHhc------Ccc--cceEEEEe-CCeEEEEechHHHHHHHHcCCCee
Q 033111           40 PVILELPLDKIRRPLMRTRANDQNKVKELMDSIQQI------GLQ--VPIDVIEV-DGNYYGFSGCHRYEAHQRLGLPTI  110 (127)
Q Consensus        40 ~~i~~Ipi~~I~~~~~~rr~~~~~~i~~La~SI~~~------G~l--~PIvV~~~-~g~y~Ii~G~rRl~Aak~LG~~~I  110 (127)
                      ..+.+|+|++|+|..-.   +.-.++..=...+++.      -++  .||-|... +|.++++||||+++|+..+|.++|
T Consensus         4 ~~l~~V~i~~L~PTQ~~---vG~~eV~~k~~~~~~~~~~~~~~yl~~k~vPvV~gp~g~lylvD~HH~~ral~e~g~~~v   80 (201)
T d2hwja1           4 PRLSRIAIDKLRPTQIA---VGFREVELKRKEWRETRKKDGDDFLGNHIVPVVAGPKDRAYLIDHHHLVLALSKEGVEHV   80 (201)
T ss_dssp             CBEEEEEGGGCBCSBSE---ECHHHHHHHHHHHHTCC-----CCTTCBEEEEEECSTTCEEECSCHHHHHHHHHTTCCEE
T ss_pred             CceEEEEHHhcCCchhh---hhHHHHHHHHHHHHhcCHHHHHHHHhcCCcCEEECCCCCeEEEcchHHHHHHHHcCCcee
Confidence            56889999999983221   2323333323333221      122  55555443 578999999999999999999999


Q ss_pred             eEEEE-eCCH
Q 033111          111 RCKVR-RGTK  119 (127)
Q Consensus       111 p~iV~-d~~d  119 (127)
                      ++.|+ ++++
T Consensus        81 ~v~v~~dls~   90 (201)
T d2hwja1          81 LTSEVAKFSH   90 (201)
T ss_dssp             EEEEEEECTT
T ss_pred             EEEEEeeccc
Confidence            99986 5553