Citrus Sinensis ID: 033141

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
MASASCSAAMLPFAETLKPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANNGNTKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHFSLIQYQPHSSCVYV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccEEcccccccccccEEEEEEEEcccccccccccEEEEcccccccEEcccccccccccccccccEEccccEEEEccccccccEEEEEcccccEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccEEcccccccEEEEEcccccccccccEEEEEEEccccccccccEEEEccccccccEEccccccccccccccccccEccccEEEEccccccEEEEEEEcccccEEEc
Coil and Loop (DISEMBL)
masascsaamlpfaetlkprahvdsssdskdhlindtpkttkvnrLHSIRVKAAanngntkrnsvvcadcdgngavlcsqckgsgvnavdffggqfkagdscwlcgqssqhfsliqyqphsscvyv
Flexible Loop (DISEMBL)
MASASCSAAMLPFAETLKPRAHVdsssdskdhlindtpkttkvnrlhsirvkaaanngntkrnsVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQhfsliqyqphsscvyv
Low Complexity Region (SEG)
MASASCSAAMLPFAETLKPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANNGNTKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHFSLIQYQPHSSCVYV
Disordered region (IsUnstruct)
************************************************IRV*********KRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHFSLIQYQP*******
Disordered Region (DISOPRED)
****SCS*************************LINDTPKTTKV**********************VCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHFSLIQYQPHSSCVYV
Disordered Region (DISEMBL)
********AMLPFAETLK*************HLINDTPKTTKVNRLHSIRVKAAANNGNTKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHFSLIQYQPHSSCVYV
Disordered Region (DISPRO)
*****CSAAMLPFAETLKPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANNGNTKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHFSLIQYQPHSSCVYV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASASCSAAMLPFAETLKPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANNGNTKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHFSLIQYQPHSSCVYV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
449437394	132	PREDICTED: uncharacterized protein LOC10	0.841	0.803	0.551	3e-21
359476132	139	PREDICTED: uncharacterized protein LOC10	0.722	0.654	0.551	1e-20
296082027	117	unnamed protein product [Vitis vinifera]	0.722	0.777	0.551	2e-20
224141891	132	predicted protein [Populus trichocarpa]	0.849	0.810	0.518	4e-20
13430174	131	putative chaperon P13.9 [Castanea sativa	0.833	0.801	0.476	1e-19
255548936	131	conserved hypothetical protein [Ricinus	0.817	0.786	0.495	4e-18
351727561	132	uncharacterized protein LOC100306315 [Gl	0.769	0.734	0.504	6e-18
388502670	131	unknown [Lotus japonicus]	0.579	0.557	0.621	1e-17
356517012	133	PREDICTED: uncharacterized protein LOC10	0.571	0.541	0.583	3e-17
351721605	133	uncharacterized protein LOC100500330 [Gl	0.833	0.789	0.439	1e-16

>gi|449437394|ref|XP_004136477.1| PREDICTED: uncharacterized protein LOC101218754 [Cucumis sativus] gi|449517804|ref|XP_004165934.1| PREDICTED: uncharacterized LOC101218754 [Cucumis sativus]

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/107 (55%), Positives = 72/107 (67%), Gaps = 1/107 (0%)

Query: 1   MASASCSAAMLPFAETLKPRAHVDSSSDSKDHLI-NDTPKTTKVNRLHSIRVKAAANNGN 59
           MAS+S S +   F+ T    A +   S+ K +LI N     +   R   + +KAA N+ N
Sbjct: 1   MASSSFSPSANCFSSTTTLSAIIRDCSNQKLNLIHNGFHDYSSPARFPHLILKAAKNDRN 60

Query: 60  TKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCG 106
           TK NSV+C DCDGNGAV+CSQCKG GVNAVDFF GQFKAG+SCWLCG
Sbjct: 61  TKPNSVICGDCDGNGAVVCSQCKGKGVNAVDFFNGQFKAGESCWLCG 107

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476132|ref|XP_003631795.1| PREDICTED: uncharacterized protein LOC100854903 [Vitis vinifera]

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/107 (55%), Positives = 67/107 (62%), Gaps = 16/107 (14%)

Query: 1   MASASCSAAMLPFAETLKPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAA-ANNGN 59
           MASA+C  ++ PF+  LKP                  P   K         KAA +N+  
Sbjct: 23  MASAACLVSLNPFSALLKPGVR---------------PGFQKFPATKFSPPKAAQSNSKG 67

Query: 60  TKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCG 106
           TK NSVVCADCDGNGAVLCSQCKGSGVN+VDFF GQFKAG+SCWLCG
Sbjct: 68  TKPNSVVCADCDGNGAVLCSQCKGSGVNSVDFFNGQFKAGESCWLCG 114

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082027|emb|CBI21032.3| unnamed protein product [Vitis vinifera]

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/107 (55%), Positives = 67/107 (62%), Gaps = 16/107 (14%)

Query: 1   MASASCSAAMLPFAETLKPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAA-ANNGN 59
           MASA+C  ++ PF+  LKP                  P   K         KAA +N+  
Sbjct: 1   MASAACLVSLNPFSALLKPGVR---------------PGFQKFPATKFSPPKAAQSNSKG 45

Query: 60  TKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCG 106
           TK NSVVCADCDGNGAVLCSQCKGSGVN+VDFF GQFKAG+SCWLCG
Sbjct: 46  TKPNSVVCADCDGNGAVLCSQCKGSGVNSVDFFNGQFKAGESCWLCG 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141891|ref|XP_002324294.1| predicted protein [Populus trichocarpa] gi|118487830|gb|ABK95738.1| unknown [Populus trichocarpa] gi|222865728|gb|EEF02859.1| predicted protein [Populus trichocarpa]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/110 (51%), Positives = 71/110 (64%), Gaps = 3/110 (2%)

Query: 4   ASCSAAMLPF-AETLKPRAHVDSSSDSKDHL--INDTPKTTKVNRLHSIRVKAAANNGNT 60
           ASCS  +LP  A+      H  +S   +  +  ++D    +   R   +RVKAA  N NT
Sbjct: 2   ASCSPFVLPIRAKQQDSGIHGTNSGMQEIKILGVHDFFHNSSTARRCCVRVKAAPGNRNT 61

Query: 61  KRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQ 110
           K NS++CADCDGNGAVLCSQCKGSGVN+ D F G+FKAGDSCWLCG   +
Sbjct: 62  KPNSMICADCDGNGAVLCSQCKGSGVNSADLFNGRFKAGDSCWLCGGRKE 111

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13430174|gb|AAK25754.1|AF334834_1 putative chaperon P13.9 [Castanea sativa]

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 66/105 (62%)

Query: 1   MASASCSAAMLPFAETLKPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANNGNT 60
           MA++ C  ++  F    KP   +  S   K   +N+  + ++  +  S+ VKA  +N  T
Sbjct: 1   MANSLCFTSVCSFKSPNKPGIVIGKSVTRKVLRVNELFQKSETAKFQSLEVKATESNKGT 60

Query: 61  KRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLC 105
           K NS+VCADCDGNGA LC+QC+GSGVN VD F GQFKAG  CWLC
Sbjct: 61  KPNSIVCADCDGNGAKLCTQCEGSGVNTVDHFNGQFKAGGLCWLC 105

Source: Castanea sativa

Species: Castanea sativa

Genus: Castanea

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548936|ref|XP_002515524.1| conserved hypothetical protein [Ricinus communis] gi|223545468|gb|EEF46973.1| conserved hypothetical protein [Ricinus communis]

 Score = 95.9 bits (237), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/105 (49%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 4   ASCSAAMLPFAETLKPRAHVDSSSDSKDHLINDTPKT--TKVNRLHSIRVKAAANNGNTK 61
           A+C +  LP         +  SS   +   I+D  ++  T   R   ++ +AA ++ N K
Sbjct: 2   ATCLSLQLPIRAMEDSGFNGGSSRKQETLGIHDLFQSSFTGTARRCYLKTRAAPSDQNPK 61

Query: 62  RNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCG 106
             SV+C DCDGNGAVLCSQCKGSGVN+VD F GQFKAGDSCWLCG
Sbjct: 62  PKSVICTDCDGNGAVLCSQCKGSGVNSVDIFNGQFKAGDSCWLCG 106

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727561|ref|NP_001236909.1| uncharacterized protein LOC100306315 [Glycine max] gi|255628181|gb|ACU14435.1| unknown [Glycine max]

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 62/101 (61%), Gaps = 4/101 (3%)

Query: 16  TLKPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANNG----NTKRNSVVCADCD 71
           T  P    +S ++ K   +N   +     +   +  KAA +N     NTK NSV+CAD D
Sbjct: 13  TPAPGIGKESHTNPKHFGVNYAFQVPIATKYRYVITKAAKDNQSTNRNTKPNSVICADSD 72

Query: 72  GNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHF 112
           GNGAVLCSQCKGSGVN+VD F GQFKAGDSCWLCG   +  
Sbjct: 73  GNGAVLCSQCKGSGVNSVDIFNGQFKAGDSCWLCGGRKEML 113

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502670|gb|AFK39401.1| unknown [Lotus japonicus]

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/74 (62%), Positives = 55/74 (74%), Gaps = 1/74 (1%)

Query: 34  INDTPKTTKVNRLHSIRVKAA-ANNGNTKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFF 92
           +N   +    ++   +  KAA  N  NTK NSV+CADCDGNGAV+CSQCKG+GVN+VD F
Sbjct: 33  VNRLFQGPPTDKFSFLTAKAANGNQQNTKPNSVICADCDGNGAVVCSQCKGNGVNSVDIF 92

Query: 93  GGQFKAGDSCWLCG 106
            GQFKAGDSCWLCG
Sbjct: 93  NGQFKAGDSCWLCG 106

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517012|ref|XP_003527184.1| PREDICTED: uncharacterized protein LOC100808293 [Glycine max]

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/72 (58%), Positives = 55/72 (76%)

Query: 34  INDTPKTTKVNRLHSIRVKAAANNGNTKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFG 93
           IN+    +K     S++VKAA +N +TK  S+VC+DC+GNGA+LC+QCKG+GVN+VD F 
Sbjct: 36  INEACHDSKARNFQSLKVKAADDNPSTKTKSIVCSDCEGNGAILCTQCKGTGVNSVDHFN 95

Query: 94  GQFKAGDSCWLC 105
           GQFKAG  CWLC
Sbjct: 96  GQFKAGGLCWLC 107

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721605|ref|NP_001236447.1| uncharacterized protein LOC100500330 [Glycine max] gi|255630057|gb|ACU15382.1| unknown [Glycine max]

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 67/107 (62%), Gaps = 2/107 (1%)

Query: 1   MASASCSAAMLPFAETLKPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANN--G 58
           MA + C A +     + +P A   +S   K   + +  + ++V    S++VKA  +N   
Sbjct: 1   MAHSLCFAPICSLKSSNRPGAVTGNSVTRKAFEMKEVCQNSEVPNFQSLKVKATEDNTTK 60

Query: 59  NTKRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLC 105
           +TK  S+VC+DCDGNGA+ C+QCKG+GVN+VD F GQFKAG  CWLC
Sbjct: 61  STKVRSIVCSDCDGNGAISCTQCKGTGVNSVDHFNGQFKAGGLCWLC 107

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
TAIR|locus:2079132	136	AT3G47650 [Arabidopsis thalian	0.682	0.632	0.516	3.1e-19

TAIR|locus:2079132 AT3G47650 [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 46/89 (51%), Positives = 58/89 (65%)

Query:    18 KPRAHVDSSSDSKDHLINDTPKTTKVNRLHSIRVKAAANNGN-TKRNSVVCADCDGNGAV 76
             KP +H  S++D+   L+    +  + +R  S  VKAA NN   TK NS+VCA+C+G G V
Sbjct:    24 KP-SHFFSTNDNTSSLVQKR-ELLQTSRSQSFEVKAANNNPQGTKPNSLVCANCEGEGCV 81

Query:    77 LCSQCKGSGVNAVDFFGGQFKAGDSCWLC 105
              CSQCKG GVN +D F GQFKAG  CWLC
Sbjct:    82 ACSQCKGGGVNLIDHFNGQFKAGALCWLC 110


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.128   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      126       126   0.00091  102 3  11 22  0.38    31
                                                     29  0.40    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  141 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.25u 0.11s 13.36t   Elapsed:  00:00:00
  Total cpu time:  13.25u 0.11s 13.36t   Elapsed:  00:00:00
  Start:  Fri May 10 15:35:35 2013   End:  Fri May 10 15:35:35 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	97.13
PLN03165	111	chaperone protein dnaJ-related; Provisional	96.34
PRK10767	371	chaperone protein DnaJ; Provisional	96.15
PRK14286	372	chaperone protein DnaJ; Provisional	95.62
PRK14290	365	chaperone protein DnaJ; Provisional	95.6
PRK14279	392	chaperone protein DnaJ; Provisional	95.47
PRK14300	372	chaperone protein DnaJ; Provisional	95.37
PRK14294	366	chaperone protein DnaJ; Provisional	95.34
PRK14289	386	chaperone protein DnaJ; Provisional	95.28
PRK14284	391	chaperone protein DnaJ; Provisional	95.24
PRK14278	378	chaperone protein DnaJ; Provisional	95.09
PRK14283	378	chaperone protein DnaJ; Provisional	95.04
PRK14301	373	chaperone protein DnaJ; Provisional	95.03
PRK14288	369	chaperone protein DnaJ; Provisional	94.99
PRK14282	369	chaperone protein DnaJ; Provisional	94.94
PRK14276	380	chaperone protein DnaJ; Provisional	94.9
PRK14298	377	chaperone protein DnaJ; Provisional	94.82
PRK14295	389	chaperone protein DnaJ; Provisional	94.79
PRK14285	365	chaperone protein DnaJ; Provisional	94.73
PRK14280	376	chaperone protein DnaJ; Provisional	94.7
PRK14296	372	chaperone protein DnaJ; Provisional	94.62
PRK14277	386	chaperone protein DnaJ; Provisional	94.6
PRK14287	371	chaperone protein DnaJ; Provisional	94.56
PRK14297	380	chaperone protein DnaJ; Provisional	94.55
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	94.5
PLN03165	111	chaperone protein dnaJ-related; Provisional	94.33
PRK14281	397	chaperone protein DnaJ; Provisional	94.21
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	94.11
PRK14292	371	chaperone protein DnaJ; Provisional	93.92
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	93.47
PRK14291	382	chaperone protein DnaJ; Provisional	92.84
PRK14293	374	chaperone protein DnaJ; Provisional	92.84
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	92.77
PTZ00037	421	DnaJ_C chaperone protein; Provisional	91.43
PRK10767	371	chaperone protein DnaJ; Provisional	90.77
PRK14298	377	chaperone protein DnaJ; Provisional	87.74
PRK14283	378	chaperone protein DnaJ; Provisional	87.46
PRK14291	382	chaperone protein DnaJ; Provisional	87.02
PRK14286	372	chaperone protein DnaJ; Provisional	86.79
PRK14287	371	chaperone protein DnaJ; Provisional	86.46
PRK14284	391	chaperone protein DnaJ; Provisional	85.8
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	85.74
PRK14288	369	chaperone protein DnaJ; Provisional	84.61
PRK14277	386	chaperone protein DnaJ; Provisional	84.24
PRK14282	369	chaperone protein DnaJ; Provisional	83.59
PRK14285	365	chaperone protein DnaJ; Provisional	82.99
PRK14296	372	chaperone protein DnaJ; Provisional	82.93
PRK14300	372	chaperone protein DnaJ; Provisional	82.37
PRK14292	371	chaperone protein DnaJ; Provisional	82.36
PRK14293	374	chaperone protein DnaJ; Provisional	82.14
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	82.13
PRK14279	392	chaperone protein DnaJ; Provisional	82.06
PRK14289	386	chaperone protein DnaJ; Provisional	81.35
PTZ00037	421	DnaJ_C chaperone protein; Provisional	81.18
PRK14290	365	chaperone protein DnaJ; Provisional	80.83
PRK14278	378	chaperone protein DnaJ; Provisional	80.8
PRK14280	376	chaperone protein DnaJ; Provisional	80.39
PRK14297	380	chaperone protein DnaJ; Provisional	80.29

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=97.13  E-value=0.0002  Score=46.68  Aligned_cols=46  Identities=37%  Similarity=0.827  Sum_probs=35.9

Q ss_pred             eccCCCCCc------EecccccCCccCcccc--cCceeccCCeEeecccccccc
Q 033141           67 CADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGQSSQHF  112 (126)
Q Consensus        67 C~dCdGnGa------i~C~QCkG~GvN~~D~--FnG~fKaG~~CWLCrGkk~il  112 (126)
                      |+.|+|+|+      ..|..|+|+|+-..-+  +.|.|+.-..|-.|.|+-++.
T Consensus         1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i   54 (66)
T PF00684_consen    1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII   54 (66)
T ss_dssp             -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-
T ss_pred             CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE
Confidence            789999998      7899999999876654  677788888999999998875

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=96.34  E-value=0.0015  Score=48.14  Aligned_cols=49  Identities=33%  Similarity=0.655  Sum_probs=35.3

Q ss_pred             ccCceeeccCCCCCcEecccccCCccCcccccCceeccCCeEeecccccc
Q 033141           61 KRNSVVCADCDGNGAVLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQ  110 (126)
Q Consensus        61 kp~s~~C~dCdGnGai~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~  110 (126)
                      ......|..|+|.|+..|..|.|+|+-..... +.++.=..|.-|.|.-+
T Consensus        38 ~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~-g~~q~~~~C~~C~G~Gk   86 (111)
T PLN03165         38 RENTQPCFPCSGTGAQVCRFCVGSGNVTVELG-GGEKEVSKCINCDGAGS   86 (111)
T ss_pred             hccCCCCCCCCCCCCcCCCCCcCcCeEEEEeC-CcEEEEEECCCCCCcce
Confidence            34568899999999999999999998766552 32333446666666654

>PRK10767 chaperone protein DnaJ; Provisional

Probab=96.15  E-value=0.002  Score=53.12  Aligned_cols=47  Identities=30%  Similarity=0.700  Sum_probs=33.4

Q ss_pred             CceeeccCCCCCc------EecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i  111 (126)
                      ....|+.|+|+|+      ..|.+|.|+|+-....  |.|..-..|+-|.|+-.+
T Consensus       141 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~~~~~~C~~C~G~G~~  193 (371)
T PRK10767        141 TLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQ--GFFTVQQTCPTCHGRGKI  193 (371)
T ss_pred             ecccCCCCCCcccCCCCCCccCCCCCCeeEEEEee--ceEEEEEeCCCCCCceeE
Confidence            4578999999995      4799999999765543  555444566666666544

>PRK14286 chaperone protein DnaJ; Provisional

Probab=95.62  E-value=0.0045  Score=51.59  Aligned_cols=47  Identities=32%  Similarity=0.681  Sum_probs=35.4

Q ss_pred             CceeeccCCCCCc------EecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i  111 (126)
                      ....|+.|+|.|+      ..|.+|.|+|+-....  |.|.--..|.-|.|+-.+
T Consensus       149 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~--G~~~~~~~C~~C~G~G~~  201 (372)
T PRK14286        149 RLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQ--GFFSVATTCPTCRGKGTV  201 (372)
T ss_pred             ccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEe--ceEEEEEeCCCCCceeeE
Confidence            4578999999996      6799999999765553  555555578888777544

>PRK14290 chaperone protein DnaJ; Provisional

Probab=95.60  E-value=0.0051  Score=50.90  Aligned_cols=48  Identities=31%  Similarity=0.767  Sum_probs=32.9

Q ss_pred             ceeeccCCCCCc-----EecccccCCccCcccccCcee--ccCCeEeeccccccc
Q 033141           64 SVVCADCDGNGA-----VLCSQCKGSGVNAVDFFGGQF--KAGDSCWLCGQSSQH  111 (126)
Q Consensus        64 s~~C~dCdGnGa-----i~C~QCkG~GvN~~D~FnG~f--KaG~~CWLCrGkk~i  111 (126)
                      -..|+.|+|+|+     ..|.+|.|+|+-..-...|.|  ..-..|+-|.|+..+
T Consensus       149 ~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~  203 (365)
T PRK14290        149 NAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRI  203 (365)
T ss_pred             cccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeE
Confidence            478999999996     579999999976554444443  233456666666544

>PRK14279 chaperone protein DnaJ; Provisional

Probab=95.47  E-value=0.0046  Score=51.99  Aligned_cols=48  Identities=31%  Similarity=0.743  Sum_probs=36.5

Q ss_pred             CceeeccCCCCCc------EecccccCCccCcccccCceeccCCeEeecccccccc
Q 033141           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHF  112 (126)
Q Consensus        63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~il  112 (126)
                      ..+.|+.|.|.|+      ..|.+|.|+|+-....  |.|..-..|.-|.|+-++.
T Consensus       172 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~~~~~~C~~C~G~G~~i  225 (392)
T PRK14279        172 SPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ--GAFGFSEPCTDCRGTGSII  225 (392)
T ss_pred             ccccCCCCccccccCCCCCCCCCCCcceEEEEEEe--cceEEEEecCCCCceeEEe
Confidence            4578999999997      5699999999865554  4444447888888877653

>PRK14300 chaperone protein DnaJ; Provisional

Probab=95.37  E-value=0.0065  Score=50.55  Aligned_cols=47  Identities=30%  Similarity=0.743  Sum_probs=35.4

Q ss_pred             CceeeccCCCCCc------EecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i  111 (126)
                      ....|+.|+|+|.      ..|.+|.|+|....  ..|.|..-..|+-|.|.-.+
T Consensus       144 r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~--~~g~~~~~~~C~~C~G~G~~  196 (372)
T PRK14300        144 SEVKCDTCHGSGSEKGETVTTCDACSGVGATRM--QQGFFTIEQACHKCQGNGQI  196 (372)
T ss_pred             eccccCCCCCcccCCCCCCccCCCccCeEEEEE--eeceEEEEEeCCCCCccceE
Confidence            3478999999995      67999999997654  33666555578888777655

>PRK14294 chaperone protein DnaJ; Provisional

Probab=95.34  E-value=0.0066  Score=50.27  Aligned_cols=47  Identities=30%  Similarity=0.660  Sum_probs=35.8

Q ss_pred             CceeeccCCCCCc------EecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i  111 (126)
                      ....|+.|+|+|+      ..|.+|.|+|+-....  |.|+--..|.-|.|+..+
T Consensus       143 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--G~~~~~~~C~~C~G~G~~  195 (366)
T PRK14294        143 KLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQ--GFFSIRTTCPRCRGMGKV  195 (366)
T ss_pred             ecccCCCCCCccccCCCCcccCCCcCCeEEEEEEe--eeEEEEeeCCCCCCcCee
Confidence            4578999999996      4799999999765543  555555678888887765

>PRK14289 chaperone protein DnaJ; Provisional

Probab=95.28  E-value=0.0076  Score=50.14  Aligned_cols=49  Identities=31%  Similarity=0.641  Sum_probs=36.9

Q ss_pred             CceeeccCCCCCc------EecccccCCccCcccc--cCceeccCCeEeeccccccc
Q 033141           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~--FnG~fKaG~~CWLCrGkk~i  111 (126)
                      ..+.|+.|+|+|+      ..|.+|.|+|.-...+  +.|.+..-..|+.|.|.-.+
T Consensus       153 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~  209 (386)
T PRK14289        153 KYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKI  209 (386)
T ss_pred             eecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccc
Confidence            4578999999995      6799999999877654  23555556778888777654

>PRK14284 chaperone protein DnaJ; Provisional

Probab=95.24  E-value=0.0085  Score=50.15  Aligned_cols=48  Identities=33%  Similarity=0.735  Sum_probs=35.3

Q ss_pred             CceeeccCCCCCc------EecccccCCccCcccccCceeccCCeEeecccccccc
Q 033141           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHF  112 (126)
Q Consensus        63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~il  112 (126)
                      ....|+.|.|.|+      ..|.+|.|+|+-..-.  |.|.--..|.-|.|+-.+.
T Consensus       157 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~--G~~~~~~~C~~C~G~G~~~  210 (391)
T PRK14284        157 GYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR--GFFSMASTCPECGGEGRVI  210 (391)
T ss_pred             eeccCCCCcccccCCCCCCeecCccCCeeEEEEEe--ceEEEEEECCCCCCCCccc
Confidence            4578999999986      5699999999755443  5666666788887776553

>PRK14278 chaperone protein DnaJ; Provisional

Probab=95.09  E-value=0.01  Score=49.62  Aligned_cols=49  Identities=31%  Similarity=0.662  Sum_probs=34.8

Q ss_pred             CceeeccCCCCCc------EecccccCCccCccc--ccCceeccCCeEeeccccccc
Q 033141           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVD--FFGGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D--~FnG~fKaG~~CWLCrGkk~i  111 (126)
                      ....|+.|+|.|+      ..|++|.|+|+-...  .+.|+|.--..|.-|.|.-++
T Consensus       138 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~  194 (378)
T PRK14278        138 TAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEV  194 (378)
T ss_pred             eeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCcccee
Confidence            4578999999996      579999999974433  344555544567777766654

>PRK14283 chaperone protein DnaJ; Provisional

Probab=95.04  E-value=0.0083  Score=49.90  Aligned_cols=49  Identities=24%  Similarity=0.443  Sum_probs=35.8

Q ss_pred             CceeeccCCCCCc------EecccccCCccCccccc--CceeccCCeEeeccccccc
Q 033141           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFF--GGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~F--nG~fKaG~~CWLCrGkk~i  111 (126)
                      ....|++|.|.|+      ..|.+|.|+|+-...+.  .|+|..-..|+-|.|.-.+
T Consensus       145 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~  201 (378)
T PRK14283        145 HTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKI  201 (378)
T ss_pred             eeccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCcccee
Confidence            4678999999885      56999999999876643  3556555677777666543

>PRK14301 chaperone protein DnaJ; Provisional

Probab=95.03  E-value=0.0091  Score=49.81  Aligned_cols=48  Identities=33%  Similarity=0.729  Sum_probs=36.1

Q ss_pred             CceeeccCCCCCc------EecccccCCccCcccccCceeccCCeEeecccccccc
Q 033141           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHF  112 (126)
Q Consensus        63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~il  112 (126)
                      ....|+.|+|.|+      ..|.+|.|+|+-....  |.|+--..|..|.|...+.
T Consensus       143 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~--G~~~~~~~C~~C~G~G~~~  196 (373)
T PRK14301        143 KNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQ--GFFQIAVPCPVCRGEGRVI  196 (373)
T ss_pred             ecccCCCCCCcccCCCCCCcccCCccCeeEEEEEe--eeEEEEEeCCCCCceeeec
Confidence            4578999999996      5699999999755443  5666667788887776653

>PRK14288 chaperone protein DnaJ; Provisional

Probab=94.99  E-value=0.01  Score=49.39  Aligned_cols=46  Identities=33%  Similarity=0.712  Sum_probs=32.9

Q ss_pred             ceeeccCCCCCc-----EecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141           64 SVVCADCDGNGA-----VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        64 s~~C~dCdGnGa-----i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i  111 (126)
                      -..|..|+|+|+     ..|.+|.|+|+-....  |.|.--..|.-|.|+..+
T Consensus       140 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~--g~~~~~~~C~~C~G~G~~  190 (369)
T PRK14288        140 QSVCESCDGTGAKDKALETCKQCNGQGQVFMRQ--GFMSFAQTCGACQGKGKI  190 (369)
T ss_pred             eccCCCCCCcccCCCCCcCCCCCCCCcEEEEEe--ceEEEEEecCCCCCCceE
Confidence            358999999996     4699999999765544  444333478887777654

>PRK14282 chaperone protein DnaJ; Provisional

Probab=94.94  E-value=0.011  Score=49.15  Aligned_cols=49  Identities=31%  Similarity=0.718  Sum_probs=35.0

Q ss_pred             CceeeccCCCCCc------EecccccCCccCcccc--cCceeccCCeEeeccccccc
Q 033141           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~--FnG~fKaG~~CWLCrGkk~i  111 (126)
                      ..+.|..|+|.|+      +.|.+|.|+|+-...+  +-|.|.-=..|.-|.|+-.+
T Consensus       151 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~  207 (369)
T PRK14282        151 RYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKI  207 (369)
T ss_pred             ecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCccee
Confidence            4578999999996      4799999999765543  33555445577777776654

>PRK14276 chaperone protein DnaJ; Provisional

Probab=94.90  E-value=0.01  Score=49.50  Aligned_cols=50  Identities=34%  Similarity=0.749  Sum_probs=37.1

Q ss_pred             CceeeccCCCCCc------EecccccCCccCcccc--cCceeccCCeEeecccccccc
Q 033141           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGQSSQHF  112 (126)
Q Consensus        63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~--FnG~fKaG~~CWLCrGkk~il  112 (126)
                      ....|..|+|.|+      ..|.+|.|+|+=.+..  .-|.|.--..|..|.|+-.+.
T Consensus       145 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~  202 (380)
T PRK14276        145 REATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI  202 (380)
T ss_pred             ccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc
Confidence            4578999999996      5799999999755443  235555566888888876653

>PRK14298 chaperone protein DnaJ; Provisional

Probab=94.82  E-value=0.012  Score=49.19  Aligned_cols=49  Identities=31%  Similarity=0.608  Sum_probs=34.0

Q ss_pred             CceeeccCCCCCc------EecccccCCccCcccc--cCceeccCCeEeeccccccc
Q 033141           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~--FnG~fKaG~~CWLCrGkk~i  111 (126)
                      ..+.|..|+|.|+      ..|.+|.|+|+-....  -.|.|+--..|.-|.|.-.+
T Consensus       140 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~  196 (377)
T PRK14298        140 RAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQV  196 (377)
T ss_pred             eeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcc
Confidence            4578999999997      6799999999765443  23445555566666666544

>PRK14295 chaperone protein DnaJ; Provisional

Probab=94.79  E-value=0.0096  Score=50.04  Aligned_cols=47  Identities=28%  Similarity=0.675  Sum_probs=34.8

Q ss_pred             CceeeccCCCCCc------EecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i  111 (126)
                      ..+.|..|+|.|+      ..|.+|.|+|+-..-.  |.|.-=..|.-|.|+-.+
T Consensus       165 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~~~~~~C~~C~G~G~~  217 (389)
T PRK14295        165 SQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS--GGFSLSEPCPDCKGRGLI  217 (389)
T ss_pred             ccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe--cceEEEEecCCCcceeEE
Confidence            4578999999995      6799999999877665  333333478888777655

>PRK14285 chaperone protein DnaJ; Provisional

Probab=94.73  E-value=0.015  Score=48.42  Aligned_cols=47  Identities=28%  Similarity=0.661  Sum_probs=35.1

Q ss_pred             CceeeccCCCCCc------EecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i  111 (126)
                      ....|..|.|.|+      ..|.+|.|+|+-..  -.|.|+-=..|.-|.|.-.+
T Consensus       145 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~--~~G~~~~~~~C~~C~G~G~~  197 (365)
T PRK14285        145 RNMLCESCLGKKSEKGTSPSICNMCNGSGRVMQ--GGGFFRVTTTCPKCYGNGKI  197 (365)
T ss_pred             ecccCCCCCCcccCCCCCCccCCCccCceeEEe--cCceeEEeeecCCCCCcccc
Confidence            3578999999995      57999999997664  23555555677777777665

>PRK14280 chaperone protein DnaJ; Provisional

Probab=94.70  E-value=0.012  Score=48.95  Aligned_cols=49  Identities=33%  Similarity=0.655  Sum_probs=35.6

Q ss_pred             CceeeccCCCCCc------EecccccCCccCcccc--cCceeccCCeEeeccccccc
Q 033141           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~--FnG~fKaG~~CWLCrGkk~i  111 (126)
                      .-+.|++|.|+|+      ..|.+|.|+|+=....  .-|.|.--..|+.|.|+-.+
T Consensus       142 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~  198 (376)
T PRK14280        142 KEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQE  198 (376)
T ss_pred             eeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCce
Confidence            4578999999995      5799999999754443  22445445588888887665

>PRK14296 chaperone protein DnaJ; Provisional

Probab=94.62  E-value=0.014  Score=48.80  Aligned_cols=49  Identities=31%  Similarity=0.669  Sum_probs=33.9

Q ss_pred             CceeeccCCCCCc------EecccccCCccCcccccCc--eeccCCeEeeccccccc
Q 033141           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGG--QFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~FnG--~fKaG~~CWLCrGkk~i  111 (126)
                      ....|..|+|+|+      ..|..|.|+|+-....-.|  .|+.=..|..|.|+.++
T Consensus       148 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~  204 (372)
T PRK14296        148 LLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKI  204 (372)
T ss_pred             eeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCccee
Confidence            4578999999996      4699999999876664223  23333457777666554

>PRK14277 chaperone protein DnaJ; Provisional

Probab=94.60  E-value=0.013  Score=49.02  Aligned_cols=49  Identities=27%  Similarity=0.482  Sum_probs=34.2

Q ss_pred             CceeeccCCCCCc------EecccccCCccCcccc--cCceeccCCeEeeccccccc
Q 033141           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~--FnG~fKaG~~CWLCrGkk~i  111 (126)
                      ....|+.|+|.|+      ..|.+|.|+|+-..-.  .-|.+..-..|.-|.|+-.+
T Consensus       154 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~  210 (386)
T PRK14277        154 RFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKI  210 (386)
T ss_pred             eeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceee
Confidence            4578999999996      5699999999755443  23444444577777776554

>PRK14287 chaperone protein DnaJ; Provisional

Probab=94.56  E-value=0.016  Score=48.40  Aligned_cols=49  Identities=31%  Similarity=0.611  Sum_probs=33.0

Q ss_pred             CceeeccCCCCCc------EecccccCCccCcccc--cCceeccCCeEeeccccccc
Q 033141           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~--FnG~fKaG~~CWLCrGkk~i  111 (126)
                      ....|+.|.|.|+      ..|.+|.|+|+-.+..  .-|+|..-..|.-|.|+-.+
T Consensus       137 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~  193 (371)
T PRK14287        137 REETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKI  193 (371)
T ss_pred             eeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcc
Confidence            4578999999994      5799999999655443  22444444466666666544

>PRK14297 chaperone protein DnaJ; Provisional

Probab=94.55  E-value=0.014  Score=48.56  Aligned_cols=49  Identities=33%  Similarity=0.674  Sum_probs=36.1

Q ss_pred             CceeeccCCCCCc------EecccccCCccCcccc--cCceeccCCeEeeccccccc
Q 033141           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~--FnG~fKaG~~CWLCrGkk~i  111 (126)
                      ....|+.|.|.|+      ..|.+|.|+|+=.+.+  ..|.|..-..|.-|.|+..+
T Consensus       147 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~  203 (380)
T PRK14297        147 RNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKV  203 (380)
T ss_pred             eeccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceE
Confidence            4578999999996      5799999999654443  34556556678888887655

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=94.50  E-value=0.026  Score=36.68  Aligned_cols=10  Identities=40%  Similarity=1.292  Sum_probs=4.5

Q ss_pred             eeeccCCCCC
Q 033141           65 VVCADCDGNG   74 (126)
Q Consensus        65 ~~C~dCdGnG   74 (126)
                      ..|+.|.|.|
T Consensus        16 ~~C~~C~G~G   25 (66)
T PF00684_consen   16 KTCPQCNGSG   25 (66)
T ss_dssp             EE-TTSSSSS
T ss_pred             cCCcCCCCee
Confidence            3455555555

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=94.33  E-value=0.032  Score=41.19  Aligned_cols=29  Identities=34%  Similarity=0.967  Sum_probs=23.0

Q ss_pred             cCceeeccCCCCCcEecccccCCccCccc
Q 033141           62 RNSVVCADCDGNGAVLCSQCKGSGVNAVD   90 (126)
Q Consensus        62 p~s~~C~dCdGnGai~C~QCkG~GvN~~D   90 (126)
                      .....|+.|+|.|.++|..|+|.|+-..-
T Consensus        73 q~~~~C~~C~G~Gk~~C~~C~G~G~~~~~  101 (111)
T PLN03165         73 KEVSKCINCDGAGSLTCTTCQGSGIQPRY  101 (111)
T ss_pred             EEEEECCCCCCcceeeCCCCCCCEEEeee
Confidence            34678888888888888888888886653

>PRK14281 chaperone protein DnaJ; Provisional

Probab=94.21  E-value=0.021  Score=48.03  Aligned_cols=49  Identities=33%  Similarity=0.695  Sum_probs=34.6

Q ss_pred             CceeeccCCCCCc-----EecccccCCccCccc--ccCceeccCCeEeeccccccc
Q 033141           63 NSVVCADCDGNGA-----VLCSQCKGSGVNAVD--FFGGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        63 ~s~~C~dCdGnGa-----i~C~QCkG~GvN~~D--~FnG~fKaG~~CWLCrGkk~i  111 (126)
                      ....|+.|+|.|+     ..|.+|.|+|+-..-  .+.|+|.--..|.-|.|+-++
T Consensus       162 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~  217 (397)
T PRK14281        162 KQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRV  217 (397)
T ss_pred             eeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeee
Confidence            4578999999996     469999999964332  344555445567777776655

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=94.11  E-value=0.022  Score=46.60  Aligned_cols=49  Identities=29%  Similarity=0.603  Sum_probs=35.2

Q ss_pred             CceeeccCCCCCc------EecccccCCccCccccc--CceeccCCeEeeccccccc
Q 033141           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFF--GGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~F--nG~fKaG~~CWLCrGkk~i  111 (126)
                      ....|..|+|.|+      ..|.+|.|+|+-.....  -|.+..-..|.-|.|+..+
T Consensus       142 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~  198 (354)
T TIGR02349       142 RKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKI  198 (354)
T ss_pred             cCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCccee
Confidence            4578999999994      57999999997665532  2344444577777777654

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14292 chaperone protein DnaJ; Provisional

Probab=93.92  E-value=0.029  Score=46.39  Aligned_cols=50  Identities=22%  Similarity=0.537  Sum_probs=36.4

Q ss_pred             CceeeccCCCCCc-------EecccccCCccCcccc--cCceeccCCeEeecccccccc
Q 033141           63 NSVVCADCDGNGA-------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGQSSQHF  112 (126)
Q Consensus        63 ~s~~C~dCdGnGa-------i~C~QCkG~GvN~~D~--FnG~fKaG~~CWLCrGkk~il  112 (126)
                      ....|+.|+|.|+       ..|..|.|+|.-..-+  +.|.+..-..|+.|.|..++.
T Consensus       138 r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~  196 (371)
T PRK14292        138 RLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII  196 (371)
T ss_pred             eeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec
Confidence            4578999999984       5799999999654332  336776667888887776653

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=93.47  E-value=0.034  Score=48.23  Aligned_cols=51  Identities=33%  Similarity=0.709  Sum_probs=40.8

Q ss_pred             ccCceeeccCCCCCc------EecccccCCcc-CcccccCceeccCCeEeecccccccc
Q 033141           61 KRNSVVCADCDGNGA------VLCSQCKGSGV-NAVDFFGGQFKAGDSCWLCGQSSQHF  112 (126)
Q Consensus        61 kp~s~~C~dCdGnGa------i~C~QCkG~Gv-N~~D~FnG~fKaG~~CWLCrGkk~il  112 (126)
                      -+....|..|+|.||      +.|.+|.|+|+ ..+.+. |.|..=..|--|.|+-+|.
T Consensus       139 ~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~-g~~~~~~~C~~C~G~G~~i  196 (371)
T COG0484         139 VTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRT-GFFSFQQTCPTCNGTGKII  196 (371)
T ss_pred             cceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEee-eEEEEEEECCCCccceeEC
Confidence            347789999999975      57999999996 555555 8888888888888887765

>PRK14291 chaperone protein DnaJ; Provisional

Probab=92.84  E-value=0.042  Score=45.91  Aligned_cols=45  Identities=36%  Similarity=0.804  Sum_probs=27.8

Q ss_pred             CceeeccCCCCCc------EecccccCCccCcccccCceeccCCeEeeccccc
Q 033141           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSS  109 (126)
Q Consensus        63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk  109 (126)
                      ....|..|+|.|+      ..|.+|.|+|+=...  +|.|.-=..|--|.|+.
T Consensus       155 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--~g~~~~~~~C~~C~G~G  205 (382)
T PRK14291        155 RYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQR--GGFFRISQTCPTCGGEG  205 (382)
T ss_pred             eeccCCCCccccCCCCCCCccCCCCCCceEEEEe--cceEEEEecCCCCCCce
Confidence            4578999999884      568888888864443  23333333444444444

>PRK14293 chaperone protein DnaJ; Provisional

Probab=92.84  E-value=0.043  Score=45.68  Aligned_cols=48  Identities=31%  Similarity=0.608  Sum_probs=29.2

Q ss_pred             CceeeccCCCCCc------EecccccCCccCcccc--cCceeccCCeEeecccccc
Q 033141           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDF--FGGQFKAGDSCWLCGQSSQ  110 (126)
Q Consensus        63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~--FnG~fKaG~~CWLCrGkk~  110 (126)
                      ....|+.|+|.|+      ..|.+|.|+|+=..-.  .-|.|..-..|+-|.|.-.
T Consensus       142 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~  197 (374)
T PRK14293        142 HLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQ  197 (374)
T ss_pred             ccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCccee
Confidence            4578999999886      4599999999533322  1233333345555555444

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=92.77  E-value=0.055  Score=42.84  Aligned_cols=23  Identities=39%  Similarity=1.057  Sum_probs=21.0

Q ss_pred             ceeeccCCCCCcEe-----cccccCCcc
Q 033141           64 SVVCADCDGNGAVL-----CSQCKGSGV   86 (126)
Q Consensus        64 s~~C~dCdGnGai~-----C~QCkG~Gv   86 (126)
                      +..|+.|.|.|.++     |..|.|+|.
T Consensus        99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~  126 (186)
T TIGR02642        99 SCKCPRCRGTGLIQRRQRECDTCAGTGR  126 (186)
T ss_pred             CCcCCCCCCeeEEecCCCCCCCCCCccE
Confidence            78999999999876     999999995

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=91.43  E-value=0.099  Score=45.01  Aligned_cols=24  Identities=46%  Similarity=1.265  Sum_probs=20.3

Q ss_pred             CceeeccCCCCCc-----EecccccCCcc
Q 033141           63 NSVVCADCDGNGA-----VLCSQCKGSGV   86 (126)
Q Consensus        63 ~s~~C~dCdGnGa-----i~C~QCkG~Gv   86 (126)
                      ..++|..|+|.|+     ..|..|.|+|+
T Consensus       149 r~~~C~~C~G~G~~~~~~~~C~~C~G~G~  177 (421)
T PTZ00037        149 KDVICANCEGHGGPKDAFVDCKLCNGQGI  177 (421)
T ss_pred             ccccccccCCCCCCCCCCccCCCCCCCCe
Confidence            4578999999996     46999999996

>PRK10767 chaperone protein DnaJ; Provisional

Probab=90.77  E-value=0.12  Score=42.72  Aligned_cols=39  Identities=31%  Similarity=0.711  Sum_probs=28.8

Q ss_pred             ceeeccCCCCCcEe-----------cccccCCccCcccccCceeccCCeEeecccccccc
Q 033141           64 SVVCADCDGNGAVL-----------CSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHF  112 (126)
Q Consensus        64 s~~C~dCdGnGai~-----------C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~il  112 (126)
                      ...|+.|.|.|.+.           |.+|.|.|.=.          -..|.-|.|++-+.
T Consensus       159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v~  208 (371)
T PRK10767        159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII----------KDPCKKCHGQGRVE  208 (371)
T ss_pred             CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC----------CCCCCCCCCCceEe
Confidence            35899999999764           99999988532          25588888876543

>PRK14298 chaperone protein DnaJ; Provisional

Probab=87.74  E-value=0.34  Score=40.73  Aligned_cols=38  Identities=32%  Similarity=0.754  Sum_probs=26.6

Q ss_pred             eeeccCCCCCcE---------------ecccccCCccCcccccCceeccCCeEeecccccccc
Q 033141           65 VVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHF  112 (126)
Q Consensus        65 ~~C~dCdGnGai---------------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~il  112 (126)
                      ..|+.|.|.|.+               .|..|.|+|.=..          ..|--|.|++.+.
T Consensus       159 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v~  211 (377)
T PRK14298        159 KRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIE----------SPCPVCSGTGKVR  211 (377)
T ss_pred             CcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccC----------CCCCCCCCccEEE
Confidence            579999999854               5888888886321          3477777766543

>PRK14283 chaperone protein DnaJ; Provisional

Probab=87.46  E-value=0.44  Score=39.79  Aligned_cols=40  Identities=28%  Similarity=0.663  Sum_probs=28.8

Q ss_pred             ceeeccCCCCCcE---------------ecccccCCccCcccccCceeccCCeEeeccccccccc
Q 033141           64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHFS  113 (126)
Q Consensus        64 s~~C~dCdGnGai---------------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~il~  113 (126)
                      ...|+.|.|.|.+               .|.+|.|+|.=.          -..|--|.|+..+..
T Consensus       163 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v~~  217 (378)
T PRK14283        163 VKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV----------EKPCSNCHGKGVVRE  217 (378)
T ss_pred             CccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec----------CCCCCCCCCceeecc
Confidence            4679999999875               499999988431          245888888765433

>PRK14291 chaperone protein DnaJ; Provisional

Probab=87.02  E-value=0.32  Score=40.79  Aligned_cols=37  Identities=32%  Similarity=0.881  Sum_probs=28.2

Q ss_pred             ceeeccCCCCCcE-----------ecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141           64 SVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        64 s~~C~dCdGnGai-----------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i  111 (126)
                      -..|+.|.|.|.+           .|..|.|+|+  .         -..|--|.|+.-+
T Consensus       173 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~--~---------~~~C~~C~G~g~v  220 (382)
T PRK14291        173 EKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV--L---------REPCSKCNGRGLV  220 (382)
T ss_pred             CccCCCCCCceEEEEecceEEEEecCCCCCCceE--E---------ccCCCCCCCCceE
Confidence            4679999999965           6999999995  2         1458888886644

>PRK14286 chaperone protein DnaJ; Provisional

Probab=86.79  E-value=0.31  Score=40.78  Aligned_cols=23  Identities=39%  Similarity=1.172  Sum_probs=15.8

Q ss_pred             eeeccCCCCCcE-----------ecccccCCccC
Q 033141           65 VVCADCDGNGAV-----------LCSQCKGSGVN   87 (126)
Q Consensus        65 ~~C~dCdGnGai-----------~C~QCkG~GvN   87 (126)
                      ..|+.|.|.|.+           .|..|.|+|.-
T Consensus       168 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~  201 (372)
T PRK14286        168 TTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTV  201 (372)
T ss_pred             ccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeE
Confidence            568888888754           47777777643

>PRK14287 chaperone protein DnaJ; Provisional

Probab=86.46  E-value=0.35  Score=40.47  Aligned_cols=37  Identities=30%  Similarity=0.881  Sum_probs=26.7

Q ss_pred             eeeccCCCCCcE---------------ecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141           65 VVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        65 ~~C~dCdGnGai---------------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i  111 (126)
                      ..|+.|.|.|.+               .|..|.|.|.-..          ..|-+|.|+..+
T Consensus       156 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v  207 (371)
T PRK14287        156 ETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIK----------QKCATCGGKGKV  207 (371)
T ss_pred             cccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCcccc----------ccCCCCCCeeEE
Confidence            579999999853               5888988886431          348888876644

>PRK14284 chaperone protein DnaJ; Provisional

Probab=85.80  E-value=0.52  Score=39.61  Aligned_cols=38  Identities=32%  Similarity=0.801  Sum_probs=28.3

Q ss_pred             ceeeccCCCCCc-----------EecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141           64 SVVCADCDGNGA-----------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        64 s~~C~dCdGnGa-----------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i  111 (126)
                      ...|+.|.|.|.           ..|.+|.|+|.=..          ..|--|.|+..+
T Consensus       175 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v  223 (391)
T PRK14284        175 IKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVIT----------DPCSVCRGQGRI  223 (391)
T ss_pred             CeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccC----------CcCCCCCCccee
Confidence            468999999997           47999999985322          458888886644

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=85.74  E-value=0.41  Score=41.62  Aligned_cols=26  Identities=35%  Similarity=0.988  Sum_probs=16.7

Q ss_pred             CceeeccCCCCCcEe---cccccCCccCc
Q 033141           63 NSVVCADCDGNGAVL---CSQCKGSGVNA   88 (126)
Q Consensus        63 ~s~~C~dCdGnGai~---C~QCkG~GvN~   88 (126)
                      ....|+.|.|.|.++   |.+|+|.|+..
T Consensus       182 ~~~~C~~C~G~G~~i~~pC~~C~G~G~v~  210 (371)
T COG0484         182 FQQTCPTCNGTGKIIKDPCGKCKGKGRVK  210 (371)
T ss_pred             EEEECCCCccceeECCCCCCCCCCCCeEe
Confidence            345677777777553   77777777643

>PRK14288 chaperone protein DnaJ; Provisional

Probab=84.61  E-value=0.61  Score=39.02  Aligned_cols=36  Identities=31%  Similarity=0.816  Sum_probs=25.9

Q ss_pred             ceeeccCCCCCcE-----------ecccccCCccCcccccCceeccCCeEeeccccc
Q 033141           64 SVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSS  109 (126)
Q Consensus        64 s~~C~dCdGnGai-----------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk  109 (126)
                      -..|+.|.|.|.+           .|.+|.|+|.-.          -..|--|.|++
T Consensus       156 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g  202 (369)
T PRK14288        156 LETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII----------KTPCQACKGKT  202 (369)
T ss_pred             CcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc----------cccCccCCCcc
Confidence            4579999999965           499999888532          23477777764

>PRK14277 chaperone protein DnaJ; Provisional

Probab=84.24  E-value=0.5  Score=39.67  Aligned_cols=38  Identities=37%  Similarity=0.904  Sum_probs=27.6

Q ss_pred             ceeeccCCCCCcE---------------ecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141           64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        64 s~~C~dCdGnGai---------------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i  111 (126)
                      ...|+.|.|.|.+               .|.+|.|+|.-..          ..|--|.|++.+
T Consensus       172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v  224 (386)
T PRK14277        172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT----------DPCNKCGGTGRI  224 (386)
T ss_pred             CccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc----------CCCCCCCCCcEE
Confidence            3679999999865               5888888885421          348888887654

>PRK14282 chaperone protein DnaJ; Provisional

Probab=83.59  E-value=0.66  Score=38.64  Aligned_cols=35  Identities=40%  Similarity=1.062  Sum_probs=23.3

Q ss_pred             eeeccCCCCCcE---------------ecccccCCccCcccccCceeccCCeEeeccccc
Q 033141           65 VVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSS  109 (126)
Q Consensus        65 ~~C~dCdGnGai---------------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk  109 (126)
                      ..|+.|.|.|.+               .|..|.|.|.-.          -..|--|.|+.
T Consensus       170 ~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g  219 (369)
T PRK14282        170 VTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP----------GEYCHECGGSG  219 (369)
T ss_pred             cCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC----------CCCCCCCCCce
Confidence            578888888865               477777777432          24466676665

>PRK14285 chaperone protein DnaJ; Provisional

Probab=82.99  E-value=0.72  Score=38.54  Aligned_cols=37  Identities=30%  Similarity=0.795  Sum_probs=23.5

Q ss_pred             eeeccCCCCCcE-----------ecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141           65 VVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        65 ~~C~dCdGnGai-----------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i  111 (126)
                      ..|+.|.|.|.+           .|.+|.|+|.-.          -..|--|.|+..+
T Consensus       164 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v  211 (365)
T PRK14285        164 SICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII----------SNPCKSCKGKGSL  211 (365)
T ss_pred             ccCCCccCceeEEecCceeEEeeecCCCCCccccc----------CCCCCCCCCCCEE
Confidence            568888888754           577777777432          1346666666533

>PRK14296 chaperone protein DnaJ; Provisional

Probab=82.93  E-value=0.72  Score=38.71  Aligned_cols=12  Identities=42%  Similarity=1.207  Sum_probs=8.0

Q ss_pred             eeeccCCCCCcE
Q 033141           65 VVCADCDGNGAV   76 (126)
Q Consensus        65 ~~C~dCdGnGai   76 (126)
                      ..|+.|.|.|.+
T Consensus       167 ~~C~~C~G~G~~  178 (372)
T PRK14296        167 HICNNCHGTGEV  178 (372)
T ss_pred             ccCCCCCCCceE
Confidence            457777777754

>PRK14300 chaperone protein DnaJ; Provisional

Probab=82.37  E-value=0.81  Score=38.24  Aligned_cols=39  Identities=28%  Similarity=0.715  Sum_probs=25.6

Q ss_pred             ceeeccCCCCCcE-----------ecccccCCccCcccccCceeccCCeEeecccccccc
Q 033141           64 SVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHF  112 (126)
Q Consensus        64 s~~C~dCdGnGai-----------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~il  112 (126)
                      ...|+.|.|.|.+           .|..|.|.|.=.          -..|--|.|+.-+.
T Consensus       162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v~  211 (372)
T PRK14300        162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII----------KNPCKKCHGMGRYH  211 (372)
T ss_pred             CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe----------CCCCCCCCCceEEE
Confidence            3578888888865           477787777432          14477777765543

>PRK14292 chaperone protein DnaJ; Provisional

Probab=82.36  E-value=0.76  Score=38.13  Aligned_cols=40  Identities=33%  Similarity=0.827  Sum_probs=28.3

Q ss_pred             ceeeccCCCCCcE---------------ecccccCCccCcccccCceeccCCeEeeccccccccc
Q 033141           64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHFS  113 (126)
Q Consensus        64 s~~C~dCdGnGai---------------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~il~  113 (126)
                      -..|+.|.|.|.+               .|..|.|.|.-.          =..|--|.|+..+..
T Consensus       157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~v~~  211 (371)
T PRK14292        157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII----------TDPCTVCRGRGRTLK  211 (371)
T ss_pred             CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec----------CCCCCCCCCceEEee
Confidence            3679999998865               488888888642          156888888765543

>PRK14293 chaperone protein DnaJ; Provisional

Probab=82.14  E-value=1.2  Score=37.27  Aligned_cols=38  Identities=34%  Similarity=0.864  Sum_probs=24.5

Q ss_pred             ceeeccCCCCCcE---------------ecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141           64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        64 s~~C~dCdGnGai---------------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i  111 (126)
                      ...|+.|.|+|.+               .|..|.|.|.=          .-..|.-|.|+.-+
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~----------~~~~C~~C~G~g~v  212 (374)
T PRK14293        160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQV----------IEDPCDACGGQGVK  212 (374)
T ss_pred             CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeE----------eccCCCCCCCCccc
Confidence            3578888888853               47777777741          12347777776544

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=82.13  E-value=0.85  Score=37.43  Aligned_cols=11  Identities=36%  Similarity=1.066  Sum_probs=6.9

Q ss_pred             eeeccCCCCCc
Q 033141           65 VVCADCDGNGA   75 (126)
Q Consensus        65 ~~C~dCdGnGa   75 (126)
                      ..|+.|.|+|.
T Consensus       161 ~~C~~C~G~G~  171 (354)
T TIGR02349       161 KTCPTCGGTGQ  171 (354)
T ss_pred             ccCCCCCCeeE
Confidence            45666666663

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14279 chaperone protein DnaJ; Provisional

Probab=82.06  E-value=0.6  Score=39.44  Aligned_cols=38  Identities=32%  Similarity=0.868  Sum_probs=27.2

Q ss_pred             ceeeccCCCCCcE-----------ecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141           64 SVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        64 s~~C~dCdGnGai-----------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i  111 (126)
                      -..|+.|.|.|.+           .|..|.|+|.-.          -..|--|.|+.-+
T Consensus       190 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i----------~~~C~~C~G~g~v  238 (392)
T PRK14279        190 PKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII----------EDPCEECKGTGVT  238 (392)
T ss_pred             CCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe----------CCcCCCCCCCeEE
Confidence            3679999999865           588898888532          2347777776543

>PRK14289 chaperone protein DnaJ; Provisional

Probab=81.35  E-value=0.85  Score=38.14  Aligned_cols=38  Identities=34%  Similarity=0.810  Sum_probs=23.3

Q ss_pred             ceeeccCCCCCcE---------------ecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141           64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        64 s~~C~dCdGnGai---------------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i  111 (126)
                      ...|+.|.|.|.+               .|.+|.|+|.=..          ..|--|.|++-+
T Consensus       171 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~----------~~C~~C~G~g~v  223 (386)
T PRK14289        171 SETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIK----------KKCKKCGGEGIV  223 (386)
T ss_pred             CCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccC----------cCCCCCCCCcEE
Confidence            3668888887765               4777777764321          336666666543

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=81.18  E-value=0.93  Score=39.16  Aligned_cols=10  Identities=50%  Similarity=1.172  Sum_probs=5.3

Q ss_pred             eeeccCCCCC
Q 033141           65 VVCADCDGNG   74 (126)
Q Consensus        65 ~~C~dCdGnG   74 (126)
                      ..|+.|.|.|
T Consensus       167 ~~C~~C~G~G  176 (421)
T PTZ00037        167 VDCKLCNGQG  176 (421)
T ss_pred             ccCCCCCCCC
Confidence            3455555555

>PRK14290 chaperone protein DnaJ; Provisional

Probab=80.83  E-value=1.6  Score=36.27  Aligned_cols=39  Identities=26%  Similarity=0.727  Sum_probs=23.4

Q ss_pred             CceeeccCCCCCc---------------EecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141           63 NSVVCADCDGNGA---------------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        63 ~s~~C~dCdGnGa---------------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i  111 (126)
                      ....|+.|.|.|.               ..|.+|.|.|.=          .-..|--|.|++.+
T Consensus       164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~----------~~~~C~~C~G~g~v  217 (365)
T PRK14290        164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRI----------PEEKCPRCNGTGTV  217 (365)
T ss_pred             CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeE----------ccCCCCCCCCceeE
Confidence            3456888888774               357777777642          12346666665544

>PRK14278 chaperone protein DnaJ; Provisional

Probab=80.80  E-value=1  Score=37.88  Aligned_cols=36  Identities=36%  Similarity=0.916  Sum_probs=22.7

Q ss_pred             eeeccCCCCCcE---------------ecccccCCccCcccccCceeccCCeEeecccccc
Q 033141           65 VVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQ  110 (126)
Q Consensus        65 ~~C~dCdGnGai---------------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~  110 (126)
                      ..|+.|.|.|.+               .|..|.|+|.=.          -..|--|.|+..
T Consensus       157 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g~  207 (378)
T PRK14278        157 VTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI----------PDPCHECAGDGR  207 (378)
T ss_pred             eecCCccCceEEEEEEeccceeEEEEEECCCCCccceee----------CCCCCCCCCcee
Confidence            568888888753               477777777421          134666666643

>PRK14280 chaperone protein DnaJ; Provisional

Probab=80.39  E-value=1.1  Score=37.50  Aligned_cols=11  Identities=36%  Similarity=1.108  Sum_probs=7.0

Q ss_pred             eeeccCCCCCc
Q 033141           65 VVCADCDGNGA   75 (126)
Q Consensus        65 ~~C~dCdGnGa   75 (126)
                      ..|+.|.|.|.
T Consensus       161 ~~C~~C~G~G~  171 (376)
T PRK14280        161 ETCSHCGGSGQ  171 (376)
T ss_pred             ccCCCCCCEEE
Confidence            45666666664

>PRK14297 chaperone protein DnaJ; Provisional

Probab=80.29  E-value=0.87  Score=38.07  Aligned_cols=36  Identities=33%  Similarity=0.848  Sum_probs=25.7

Q ss_pred             ceeeccCCCCCcE---------------ecccccCCccCcccccCceeccCCeEeeccccc
Q 033141           64 SVVCADCDGNGAV---------------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSS  109 (126)
Q Consensus        64 s~~C~dCdGnGai---------------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk  109 (126)
                      ...|+.|.|.|.+               .|..|.|.|.=.          -..|--|.|+.
T Consensus       165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~g  215 (380)
T PRK14297        165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI----------EDPCNKCHGKG  215 (380)
T ss_pred             CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc----------CCCCCCCCCCe
Confidence            4679999999855               588888888532          14577777765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	126
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.3 bits (88), Expect = 3e-04
 Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 14/111 (12%)

Query: 14  AETLKPRAHVDSSSDSKDHLINDTPKTTK--VNRLHSI-RVKAAANNGNTKRNSVVCADC 70
            E  +P        + +D L ND     K  V+RL    +++ A       +N ++    
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV- 158

Query: 71  DGNG-AVLCSQ-CKGSGVNAVDFFGGQFKAGDSCWL-CGQSSQHFSLIQYQ 118
            G+G   +    C    V         F      WL     +   ++++  
Sbjct: 159 LGSGKTWVALDVCLSYKVQCK-MDFKIF------WLNLKNCNSPETVLEML 202

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	126
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	97.24
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	97.17
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	94.93
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	94.68
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	94.38
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	92.28
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	90.7
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	84.97

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.24  E-value=0.0001  Score=49.72  Aligned_cols=49  Identities=29%  Similarity=0.721  Sum_probs=37.1

Q ss_pred             cCceeeccCCCCCc------EecccccCCccCcccccCceeccCCeEeecccccccc
Q 033141           62 RNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHF  112 (126)
Q Consensus        62 p~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~il  112 (126)
                      +....|+.|+|.|+      ..|..|.|+|.-....  |.|.--..|..|.|.-++.
T Consensus        26 ~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~--G~~~~~~~C~~C~G~G~~i   80 (104)
T 2ctt_A           26 NIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT--GPFVMRSTCRRCGGRGSII   80 (104)
T ss_dssp             SCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE--TTEEEEEECSSSSSSSEEC
T ss_pred             eeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe--CCEEEEEECCcCCCcceEC
Confidence            45689999999985      6899999999754443  5555556788888877665

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=97.17  E-value=0.00011  Score=46.70  Aligned_cols=49  Identities=29%  Similarity=0.594  Sum_probs=35.4

Q ss_pred             cCceeeccCCCCCc------EecccccCCccCcccccCceeccCCeEeecccccccc
Q 033141           62 RNSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHF  112 (126)
Q Consensus        62 p~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~il  112 (126)
                      +....|+.|+|.|+      ..|..|.|+|.-....  |.|..-..|..|.|.-.+.
T Consensus         9 ~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~~~~~~C~~C~G~G~~~   63 (79)
T 1exk_A            9 PTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ--GFFAVQQTCPHCQGRGTLI   63 (79)
T ss_dssp             CCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE--TTEEEEEECTTTTTSSEEC
T ss_pred             ccceECCCCcccccCCCccCCCCCCCcCeEEEEEEc--CCCEEeeECcCCCCccEEC
Confidence            45578999999996      5799999999644322  5555445788888877664

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=94.93  E-value=0.013  Score=37.05  Aligned_cols=27  Identities=33%  Similarity=0.893  Sum_probs=22.6

Q ss_pred             ceeeccCCCCCc---EecccccCCccCccc
Q 033141           64 SVVCADCDGNGA---VLCSQCKGSGVNAVD   90 (126)
Q Consensus        64 s~~C~dCdGnGa---i~C~QCkG~GvN~~D   90 (126)
                      ...|++|.|.|.   ..|..|.|.|+-...
T Consensus         9 ~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~   38 (53)
T 3lcz_A            9 ETTCPNCNGSGREEPEPCPKCLGKGVILTA   38 (53)
T ss_dssp             EEECTTTTTSCEETTEECTTTTTSSEEECH
T ss_pred             eccCcCCcccccCCCCcCCCCCCcEEEEEE
Confidence            468999999998   579999999975443

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=94.68  E-value=0.0094  Score=45.86  Aligned_cols=50  Identities=24%  Similarity=0.662  Sum_probs=30.6

Q ss_pred             CceeeccCCCCCc-----EecccccCCccCcccccCc--eeccCCeEeecccccccc
Q 033141           63 NSVVCADCDGNGA-----VLCSQCKGSGVNAVDFFGG--QFKAGDSCWLCGQSSQHF  112 (126)
Q Consensus        63 ~s~~C~dCdGnGa-----i~C~QCkG~GvN~~D~FnG--~fKaG~~CWLCrGkk~il  112 (126)
                      ....|+.|+|.|+     ..|..|.|+|+-..-...|  .+.--..|..|.|+-++.
T Consensus        37 r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i   93 (248)
T 1nlt_A           37 KQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDII   93 (248)
T ss_dssp             EEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCC
T ss_pred             EEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEe
Confidence            3578999999995     5799999999643222112  122334566666655443

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=94.38  E-value=0.02  Score=36.12  Aligned_cols=38  Identities=32%  Similarity=0.811  Sum_probs=29.3

Q ss_pred             ceeeccCCCCCcE-----------ecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141           64 SVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        64 s~~C~dCdGnGai-----------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i  111 (126)
                      ...|+.|.|.|.+           .|..|.|+|.-.          -+.|..|.|...+
T Consensus        28 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~----------~~~C~~C~G~G~~   76 (79)
T 1exk_A           28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI----------KDPCNKCHGHGRV   76 (79)
T ss_dssp             CEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC----------SSBCGGGTTSSEE
T ss_pred             CCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC----------CCcCCCCCCeEEE
Confidence            3689999999965           799999998533          2578888887765

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=92.28  E-value=0.075  Score=33.50  Aligned_cols=26  Identities=35%  Similarity=0.888  Sum_probs=20.5

Q ss_pred             CceeeccCCCCCcE---ecccccCCccCc
Q 033141           63 NSVVCADCDGNGAV---LCSQCKGSGVNA   88 (126)
Q Consensus        63 ~s~~C~dCdGnGai---~C~QCkG~GvN~   88 (126)
                      ....|+.|.|.|++   .|..|.|+|.=.
T Consensus         8 ~~~~C~~C~GsG~~~~~~C~~C~G~G~v~   36 (53)
T 2bx9_A            8 LEVACPKCERAGEIEGTPCPACSGKGVIL   36 (53)
T ss_dssp             HEEECTTTTTSSEETTEECTTTTTSSEEE
T ss_pred             ccccCCCCcceeccCCCCCccCCCCccEE
Confidence            35689999999965   699999988643

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.70  E-value=0.12  Score=34.64  Aligned_cols=39  Identities=28%  Similarity=0.629  Sum_probs=29.9

Q ss_pred             ceeeccCCCCCcE-----------ecccccCCccCcccccCceeccCCeEeecccccccc
Q 033141           64 SVVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHF  112 (126)
Q Consensus        64 s~~C~dCdGnGai-----------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~il  112 (126)
                      ...|+.|.|.|.+           .|..|.|.|.-.          -+.|--|.|+..+.
T Consensus        45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i----------~~~C~~C~G~G~v~   94 (104)
T 2ctt_A           45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII----------ISPCVVCRGAGQAK   94 (104)
T ss_dssp             CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC----------SSCCSSSSSCSEEC
T ss_pred             CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC----------CCcCCCCCCeeEEE
Confidence            3689999999954           799999998532          26799998876554

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=84.97  E-value=0.29  Score=37.53  Aligned_cols=24  Identities=33%  Similarity=0.810  Sum_probs=12.3

Q ss_pred             eeccCCCCC-----cEecccccCCccCcc
Q 033141           66 VCADCDGNG-----AVLCSQCKGSGVNAV   89 (126)
Q Consensus        66 ~C~dCdGnG-----ai~C~QCkG~GvN~~   89 (126)
                      .|+.|.|.|     ...|..|+|.|+-.+
T Consensus        82 ~C~~C~G~G~~i~~~~~C~~C~G~g~~~~  110 (248)
T 1nlt_A           82 ECDVCHGTGDIIDPKDRCKSCNGKKVENE  110 (248)
T ss_dssp             SCTTCSSSSSCCCTTSBCSSSTTSCEEEE
T ss_pred             cCCCCCCcCEEeccCCCCcccCCCceEee
Confidence            344444444     334666666665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	126
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	97.04
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	96.74
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	93.57
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	93.05

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=7.7e-05  Score=47.41  Aligned_cols=48  Identities=29%  Similarity=0.612  Sum_probs=36.2

Q ss_pred             CceeeccCCCCCc------EecccccCCccCcccccCceeccCCeEeecccccccc
Q 033141           63 NSVVCADCDGNGA------VLCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQHF  112 (126)
Q Consensus        63 ~s~~C~dCdGnGa------i~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~il  112 (126)
                      ....|+.|+|+|+      ..|..|.|+|.-  ....|.|.--..|-.|.|+-+|.
T Consensus        10 ~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v--~~~~g~~~~~~~C~~C~G~G~~i   63 (79)
T d1exka_          10 TLEECDVCHGSGAKPGTQPQTCPTCHGSGQV--QMRQGFFAVQQTCPHCQGRGTLI   63 (79)
T ss_dssp             CEEECGGGTTTSBCSSSCCEECTTTTTSSEE--EEEETTEEEEEECTTTTTSSEEC
T ss_pred             eeccCCCCcCcccCCCccceeCCCccceeEE--EEecccceeeEECcccCcceeEC
Confidence            4578999999985      669999999953  33444444445899999988875

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.74  E-value=0.00019  Score=45.24  Aligned_cols=49  Identities=22%  Similarity=0.629  Sum_probs=33.8

Q ss_pred             ceeeccCCCCCc-----EecccccCCccCccc--ccCceeccCCeEeecccccccc
Q 033141           64 SVVCADCDGNGA-----VLCSQCKGSGVNAVD--FFGGQFKAGDSCWLCGQSSQHF  112 (126)
Q Consensus        64 s~~C~dCdGnGa-----i~C~QCkG~GvN~~D--~FnG~fKaG~~CWLCrGkk~il  112 (126)
                      .++|+.|+|+|+     ..|+.|.|+|.-..-  ...+.++.-..|-.|.|+-+++
T Consensus         2 ~v~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i   57 (74)
T d1nlta3           2 QILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDII   57 (74)
T ss_dssp             EEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCC
T ss_pred             ccCCcCCcccccCCCCCCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEe
Confidence            489999999995     459999999964433  2224444555677777776554

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.57  E-value=0.0093  Score=37.14  Aligned_cols=8  Identities=50%  Similarity=1.672  Sum_probs=4.2

Q ss_pred             eccCCCCC
Q 033141           67 CADCDGNG   74 (126)
Q Consensus        67 C~dCdGnG   74 (126)
                      |+.|.|.|
T Consensus        21 C~~C~G~G   28 (74)
T d1nlta3          21 CTSCNGQG   28 (74)
T ss_dssp             CTTSSSSS
T ss_pred             CCCCccee
Confidence            55555555

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=93.05  E-value=0.022  Score=35.51  Aligned_cols=37  Identities=32%  Similarity=0.824  Sum_probs=22.3

Q ss_pred             eeeccCCCCCcE-----------ecccccCCccCcccccCceeccCCeEeeccccccc
Q 033141           65 VVCADCDGNGAV-----------LCSQCKGSGVNAVDFFGGQFKAGDSCWLCGQSSQH  111 (126)
Q Consensus        65 ~~C~dCdGnGai-----------~C~QCkG~GvN~~D~FnG~fKaG~~CWLCrGkk~i  111 (126)
                      ..|+.|.|.|.+           .|.+|.|+|.-..          +.|-.|.|+..|
T Consensus        29 ~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i~----------~~C~~C~G~G~v   76 (79)
T d1exka_          29 QTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK----------DPCNKCHGHGRV   76 (79)
T ss_dssp             EECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS----------SBCGGGTTSSEE
T ss_pred             eeCCCccceeEEEEecccceeeEECcccCcceeECC----------CCCCCCCCceEe
Confidence            457777777743           4777777775421          246667666543