Citrus Sinensis ID: 033160

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120------
Protein Sequence
MILDAISKLEEALMDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKYDIFGWVILAVGIVAWVGFAKSHMPPPPPTPPI
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
MILDAISKLEEALMDEAKEYFNKATLYFQQavdeepsneLYQKSLEVAAKAPELHMEIHKhglgqqtmgastgpsstssgaktskkkkssdlkydiFGWVILAVGIVAWVGfakshmppppptppi
Flexible Loop (DISEMBL)
MILDAISKLEEALMDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGlgqqtmgastgpsstssgaktskkkkssdlkyDIFGWVILAVGIVAWVGFAKshmppppptppi
Low Complexity Region (SEG)
MILDAISKLEEALMDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMgastgpsstssgaktskkkkssDLKYDIFGWVILAVGIVAWVGFAKSHMppppptppI
Disordered region (IsUnstruct)
****************AKEYFNKATLYFQQA***********************************************************************************************
Disordered Region (DISOPRED)
****AISKLEEALMDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHM************************************KYDIFGWVILAVGIVAWVGFAK************
Disordered Region (DISEMBL)
MILDAISKLEEALMDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQ***********************SDLKYDIFGWVILAVGIVAWVGFAKSH**********
Disordered Region (DISPRO)
MILDAISKLEEALMDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQ************************SDLKYDIFGWVILAVGIVAWVGFAKSHMPPPP*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILDAISKLEEALMDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKYDIFGWVILAVGIVAWVGFAKSHMPPPPPTPPI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	126	2.2.26 [Sep-21-2011]
P92792	204	Mitochondrial import rece	N/A	no	0.904	0.558	0.629	2e-33
P82874	202	Mitochondrial import rece	yes	no	0.952	0.594	0.486	1e-29
P82873	210	Mitochondrial import rece	no	no	0.960	0.576	0.447	3e-28
Q5JJI4	202	Probable mitochondrial im	yes	no	0.817	0.509	0.570	1e-27
A2WYG9	201	Probable mitochondrial im	N/A	no	0.809	0.507	0.532	1e-27
P82805	187	Mitochondrial import rece	no	no	0.825	0.556	0.444	4e-23
P82872	188	Mitochondrial import rece	no	no	0.880	0.590	0.392	8e-17

>sp|P92792|TOM20_SOLTU Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum GN=TOM20 PE=1 SV=1

 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/143 (62%), Positives = 97/143 (67%), Gaps = 29/143 (20%)

Query: 1   MILDAISKLEEAL--------------------------MDEAKEYFNKATLYFQQAVDE 34
           MI DA SKLEEAL                          MDEAK YF KAT  FQQA D 
Sbjct: 56  MISDATSKLEEALTVNPEKHDALWCLGNAHTSHVFLTPDMDEAKVYFEKATQCFQQAFDA 115

Query: 35  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKY 94
           +PSN+LY+KSLEV AKAPELHMEIH+HG  QQTM A     STS+  K+SKK KSSDLKY
Sbjct: 116 DPSNDLYRKSLEVTAKAPELHMEIHRHGPMQQTMAAE---PSTSTSTKSSKKTKSSDLKY 172

Query: 95  DIFGWVILAVGIVAWVGFAKSHM 117
           DIFGWVILAVGIVAWVGFAKS+M
Sbjct: 173 DIFGWVILAVGIVAWVGFAKSNM 195

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore.
Solanum tuberosum (taxid: 4113)

>sp|P82874|TO203_ARATH Mitochondrial import receptor subunit TOM20-3 OS=Arabidopsis thaliana GN=TOM20-3 PE=1 SV=1

 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/148 (48%), Positives = 88/148 (59%), Gaps = 28/148 (18%)

Query: 1   MILDAISKLEEALM--------------------------DEAKEYFNKATLYFQQAVDE 34
           MI +AI+K EEAL+                           EAK  F+ AT +FQQAVDE
Sbjct: 56  MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115

Query: 35  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKY 94
           +P N  Y KSLE+ AKAP+LH E +K GLG Q MG    P+  SS  K  K KKSSD KY
Sbjct: 116 QPDNTHYLKSLEMTAKAPQLHAEAYKQGLGSQPMGRVEAPAPPSS--KAVKNKKSSDAKY 173

Query: 95  DIFGWVILAVGIVAWVGFAKSHMPPPPP 122
           D  GWVILA+G+VAW+ FAK+++P  PP
Sbjct: 174 DAMGWVILAIGVVAWISFAKANVPVSPP 201

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore.

Arabidopsis thaliana (taxid: 3702)

>sp|P82873|TO202_ARATH Mitochondrial import receptor subunit TOM20-2 OS=Arabidopsis thaliana GN=TOM20-2 PE=1 SV=2

 Score =  123 bits (309), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 92/152 (60%), Gaps = 31/152 (20%)

Query: 1   MILDAISKLEEALM--------------------------DEAKEYFNKATLYFQQAVDE 34
           M+ DAISKLEEAL                           +EAKE+F+KAT YFQ+A +E
Sbjct: 57  MLNDAISKLEEALTINPGKHQALWCIANAYTAHAFYVHDPEEAKEHFDKATEYFQRAENE 116

Query: 35  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGP-----SSTSSGAKTSKKKKS 89
           +P N+ Y+KSL+ + KAPELHM+    G+GQQ +G   G      +S++    + KKK++
Sbjct: 117 DPGNDTYRKSLDSSLKAPELHMQFMNQGMGQQILGGGGGGGGGGMASSNVSQSSKKKKRN 176

Query: 90  SDLKYDIFGWVILAVGIVAWVGFAKSHMPPPP 121
           ++  YD+ GW+ILA GIVAWVG AKS  PPPP
Sbjct: 177 TEFTYDVCGWIILACGIVAWVGMAKSLGPPPP 208

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5JJI4|TOM20_ORYSJ Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. japonica GN=TOM20 PE=2 SV=1

 Score =  122 bits (305), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/107 (57%), Positives = 79/107 (73%), Gaps = 4/107 (3%)

Query: 16  EAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPS 75
           +A E+F KAT  FQ+AVD EP+N+LY+KSL++++KAPELHMEIH+    Q    AS   S
Sbjct: 99  KANEFFEKATQCFQKAVDVEPANDLYRKSLDLSSKAPELHMEIHR----QMASQASQAAS 154

Query: 76  STSSGAKTSKKKKSSDLKYDIFGWVILAVGIVAWVGFAKSHMPPPPP 122
           STS+  ++ KKKK SD  YD+FGWV+L VG+V WVG AKS+ PP  P
Sbjct: 155 STSNTRQSRKKKKDSDFWYDVFGWVVLGVGMVVWVGLAKSNAPPQAP 201

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WYG9|TOM20_ORYSI Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. indica GN=TOM20 PE=2 SV=2

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/107 (53%), Positives = 79/107 (73%), Gaps = 5/107 (4%)

Query: 16  EAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPS 75
           +A E+F KAT  FQ+AVD EP+N+LY+KSL++++KAPELHMEIH+     Q    ++  +
Sbjct: 99  KANEFFEKATQCFQKAVDVEPANDLYRKSLDLSSKAPELHMEIHR-----QMASQASQAA 153

Query: 76  STSSGAKTSKKKKSSDLKYDIFGWVILAVGIVAWVGFAKSHMPPPPP 122
           S++S  + S+KKK SD  YD+FGWV+L VG+V WVG AKS+ PP  P
Sbjct: 154 SSTSNTRQSRKKKDSDFWYDVFGWVVLGVGMVVWVGLAKSNAPPQAP 200

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore.

Oryza sativa subsp. indica (taxid: 39946)

>sp|P82805|TO204_ARATH Mitochondrial import receptor subunit TOM20-4 OS=Arabidopsis thaliana GN=TOM20-4 PE=1 SV=1

 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/144 (44%), Positives = 82/144 (56%), Gaps = 40/144 (27%)

Query: 1   MILDAISKLEEALM--------------------------DEAKEYFNKATLYFQQAVDE 34
           MIL+AI KL EAL+                           EA + F KA+ +FQ AV+E
Sbjct: 54  MILEAILKLGEALVIDPKKHDALWLIGNAHLSFGFLSSDQTEASDNFEKASQFFQLAVEE 113

Query: 35  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKY 94
           +P +ELY+KSL +A+KAPELH             G + GPSS S  AKT K+KK+S+ KY
Sbjct: 114 QPESELYRKSLTLASKAPELHT------------GGTAGPSSNS--AKTMKQKKTSEFKY 159

Query: 95  DIFGWVILAVGIVAWVGFAKSHMP 118
           D+FGWVILA  +VAW+ FA S  P
Sbjct: 160 DVFGWVILASYVVAWISFANSQTP 183

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore.

Arabidopsis thaliana (taxid: 3702)

>sp|P82872|TO201_ARATH Mitochondrial import receptor subunit TOM20-1 OS=Arabidopsis thaliana GN=TOM20-1 PE=1 SV=1

 Score = 85.9 bits (211), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 55/140 (39%), Positives = 73/140 (52%), Gaps = 29/140 (20%)

Query: 1   MILDAISKLEEALM--------------------------DEAKEYFNKATLYFQQAVDE 34
           MI DAISKLE+A++                           +A+  F  A L+F  AV +
Sbjct: 50  MIQDAISKLEDAILIDPMKHDAVWCLGNAYTSYARLTPDDTQARLNFGLAYLFFGIAVAQ 109

Query: 35  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKY 94
           +P N++Y KSLE+A KAP+LH   HK+ L     G  T    +    K  K KKSSD KY
Sbjct: 110 QPDNQVYHKSLEMADKAPQLHTGFHKNRLLSLLGGVETLAIPSP---KVVKNKKSSDEKY 166

Query: 95  DIFGWVILAVGIVAWVGFAK 114
            + GWVILA+G+VA + F K
Sbjct: 167 IVMGWVILAIGVVACISFRK 186

Central component of the receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with TOM22 functions as the transit peptide receptor at the surface of the mitochondrion outer membrane and facilitates the movement of preproteins into the translocation pore.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
224057709	200	predicted protein [Populus trichocarpa]	0.936	0.59	0.634	2e-41
224072604	200	predicted protein [Populus trichocarpa]	0.936	0.59	0.630	7e-41
388503852	212	unknown [Medicago truncatula]	0.888	0.528	0.642	3e-39
225451445	201	PREDICTED: mitochondrial import receptor	0.944	0.592	0.668	1e-38
255536895	205	Mitochondrial import receptor subunit TO	0.960	0.590	0.64	3e-38
359806671	210	uncharacterized protein LOC100819858 [Gl	0.928	0.557	0.613	2e-37
356566216	201	PREDICTED: mitochondrial import receptor	0.936	0.587	0.567	2e-36
255547728	206	Mitochondrial import receptor subunit TO	0.968	0.592	0.563	2e-36
449455850	201	PREDICTED: mitochondrial import receptor	0.912	0.572	0.582	6e-35
116784454	205	unknown [Picea sitchensis]	0.936	0.575	0.537	1e-33

>gi|224057709|ref|XP_002299299.1| predicted protein [Populus trichocarpa] gi|118481274|gb|ABK92583.1| unknown [Populus trichocarpa] gi|222846557|gb|EEE84104.1| predicted protein [Populus trichocarpa]

 Score =  173 bits (438), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 92/145 (63%), Positives = 101/145 (69%), Gaps = 27/145 (18%)

Query: 1   MILDAISKLEEALM-------------------------DEAKEYFNKATLYFQQAVDEE 35
           MI DAISKLEEALM                         DEAK YF+KA  YFQQAVDE+
Sbjct: 57  MINDAISKLEEALMLNPTSNAMWSIGNANTSYAFLTPDLDEAKSYFDKAANYFQQAVDED 116

Query: 36  PSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKYD 95
           P+NELY+KSLEV AKAPELH EIHKH   QQ MG   G S+ SS AK SKKK +SDLKYD
Sbjct: 117 PNNELYRKSLEVCAKAPELHTEIHKHSSSQQIMGG--GGSTASSNAKGSKKKTNSDLKYD 174

Query: 96  IFGWVILAVGIVAWVGFAKSHMPPP 120
           IFGW+ILAVGIVAWVG AKS++PPP
Sbjct: 175 IFGWIILAVGIVAWVGMAKSNVPPP 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072604|ref|XP_002303802.1| predicted protein [Populus trichocarpa] gi|222841234|gb|EEE78781.1| predicted protein [Populus trichocarpa]

 Score =  171 bits (434), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 92/146 (63%), Positives = 101/146 (69%), Gaps = 28/146 (19%)

Query: 1   MILDAISKLEEALM-------------------------DEAKEYFNKATLYFQQAVDEE 35
           MI +AISKLEEA+M                          EAK YF+KA  YFQQAVDE+
Sbjct: 57  MINEAISKLEEAMMLNPTANAMWSIGNANTSYAFLTPDLSEAKNYFDKAADYFQQAVDED 116

Query: 36  PSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKYD 95
            +NELY KSLEV AKAPELHMEIHKH   QQTMG   G SS SS AK SKKK +SDLKYD
Sbjct: 117 STNELYHKSLEVCAKAPELHMEIHKHSSSQQTMG---GESSPSSNAKGSKKKANSDLKYD 173

Query: 96  IFGWVILAVGIVAWVGFAKSHMPPPP 121
           IFGW+ILAVGIVAW+G AKSH+PPPP
Sbjct: 174 IFGWIILAVGIVAWMGIAKSHVPPPP 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503852|gb|AFK39992.1| unknown [Medicago truncatula]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 90/140 (64%), Positives = 102/140 (72%), Gaps = 28/140 (20%)

Query: 1   MILDAISKLEEAL--------------------------MDEAKEYFNKATLYFQQAVDE 34
           M LDAISKLEEAL                          +DEAK YF+KA +YFQQA+DE
Sbjct: 57  MTLDAISKLEEALSVNPNKHGALWCLGNALTSQAFLNPDVDEAKVYFDKAAVYFQQAIDE 116

Query: 35  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKY 94
           +PSNELY+KSLEVAAKAPELH+EIHKHGLGQQ + A+ GP S S+G KT KKKK+SD+KY
Sbjct: 117 DPSNELYRKSLEVAAKAPELHVEIHKHGLGQQAVEAA-GP-SFSAGIKTQKKKKNSDMKY 174

Query: 95  DIFGWVILAVGIVAWVGFAK 114
           DI GWVILAVGIV WVGFAK
Sbjct: 175 DILGWVILAVGIVTWVGFAK 194

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451445|ref|XP_002269795.1| PREDICTED: mitochondrial import receptor subunit TOM20 [Vitis vinifera] gi|296082346|emb|CBI21351.3| unnamed protein product [Vitis vinifera]

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 99/148 (66%), Positives = 110/148 (74%), Gaps = 29/148 (19%)

Query: 1   MILDAISKLEEALM--------------------------DEAKEYFNKATLYFQQAVDE 34
           MI DAISKLEEALM                          DEA++YF+KA+ YFQQAVDE
Sbjct: 56  MIQDAISKLEEALMLNPNKHDTLWCLGNAHTSHAFLTPDQDEARDYFDKASQYFQQAVDE 115

Query: 35  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKY 94
           +P N+LY+KSLEVAAKAPELHMEIHK G  QQ MGA +   STS+G KTSKKKKSSDLKY
Sbjct: 116 DPGNDLYRKSLEVAAKAPELHMEIHKQGFSQQAMGAGS---STSTGTKTSKKKKSSDLKY 172

Query: 95  DIFGWVILAVGIVAWVGFAKSHMPPPPP 122
           DIFGW+ILAVGIVAWVGFAKSH+PPPPP
Sbjct: 173 DIFGWIILAVGIVAWVGFAKSHVPPPPP 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536895|ref|XP_002509514.1| Mitochondrial import receptor subunit TOM20, putative [Ricinus communis] gi|223549413|gb|EEF50901.1| Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 96/150 (64%), Positives = 110/150 (73%), Gaps = 29/150 (19%)

Query: 1   MILDAISKLEEALM--------------------------DEAKEYFNKATLYFQQAVDE 34
           MILD I+KLEEAL+                          DEAKE F+KAT+YFQQAV+E
Sbjct: 56  MILDGITKLEEALLIQPKKHDTLWCIGNAHTSFAFLTPDLDEAKESFDKATVYFQQAVEE 115

Query: 35  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGA--STGPSSTSSGAKTSKKKKSSDL 92
           +P NELY+KSLEVAAKAPELHMEIH+HGLGQQ MGA  ++GPS++SS   + KKK S  L
Sbjct: 116 DPENELYRKSLEVAAKAPELHMEIHRHGLGQQAMGAAPASGPSTSSSAKTSKKKKDSD-L 174

Query: 93  KYDIFGWVILAVGIVAWVGFAKSHMPPPPP 122
           KYDIFGWVILAVGIVAW+GFAKS MPPPPP
Sbjct: 175 KYDIFGWVILAVGIVAWIGFAKSQMPPPPP 204

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806671|ref|NP_001241027.1| uncharacterized protein LOC100819858 [Glycine max] gi|255647408|gb|ACU24169.1| unknown [Glycine max]

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/145 (61%), Positives = 100/145 (68%), Gaps = 28/145 (19%)

Query: 1   MILDAISKLEEAL--------------------------MDEAKEYFNKATLYFQQAVDE 34
           M  +A+SKLEEAL                           DEAK YF+KA  YFQQAVDE
Sbjct: 57  MTQEAVSKLEEALAVNPKKHDTLWCLGNAHTSQAFLIPDQDEAKVYFDKAAEYFQQAVDE 116

Query: 35  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGAS--TGPSSTSSGAKTSKKKKSSDL 92
           +PSNELY+KSLEVAAKAPELH+EIHKHG GQQ    +  T  SSTS+   T KKKKSSDL
Sbjct: 117 DPSNELYRKSLEVAAKAPELHVEIHKHGFGQQQQQQAAATAGSSTSASTNTQKKKKSSDL 176

Query: 93  KYDIFGWVILAVGIVAWVGFAKSHM 117
           KYDIFGW+ILAVGIVAWVGFAKS++
Sbjct: 177 KYDIFGWIILAVGIVAWVGFAKSNL 201

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566216|ref|XP_003551330.1| PREDICTED: mitochondrial import receptor subunit TOM20-like [Glycine max]

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/148 (56%), Positives = 100/148 (67%), Gaps = 30/148 (20%)

Query: 1   MILDAISKLEEALM--------------------------DEAKEYFNKATLYFQQAVDE 34
           MI DA+SKLEEAL+                           EAK YF+KA  YFQ+AVDE
Sbjct: 57  MIDDALSKLEEALLINPTKHDTLWCLGNANTSYAFLIPDITEAKGYFDKALDYFQKAVDE 116

Query: 35  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKY 94
           +P N+LY+KSL+VA KAPELHMEIHK+GLG      S   SS +S  K SK++KS+D KY
Sbjct: 117 DPENDLYRKSLQVAIKAPELHMEIHKNGLGLM----SNAGSSATSKEKESKRQKSNDFKY 172

Query: 95  DIFGWVILAVGIVAWVGFAKSHMPPPPP 122
           DIFGW+ILAVGIVAWVG AKS++PPPPP
Sbjct: 173 DIFGWIILAVGIVAWVGMAKSNIPPPPP 200

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547728|ref|XP_002514921.1| Mitochondrial import receptor subunit TOM20, putative [Ricinus communis] gi|223545972|gb|EEF47475.1| Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/149 (56%), Positives = 98/149 (65%), Gaps = 27/149 (18%)

Query: 1   MILDAISKLEEAL--------------------------MDEAKEYFNKATLYFQQAVDE 34
           M+ +AISKLEEAL                          +  A+ YF+KA  YFQQAVD 
Sbjct: 57  MLTEAISKLEEALVINPVKAETLWYIGNANTSFAFLTPDLTVAEGYFSKAADYFQQAVDA 116

Query: 35  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPSSTSSGAKTS-KKKKSSDLK 93
           +PSNELY+KSLEV AKAPELHMEIHK G+ +Q MGA    +S SS +K S K KKSSD +
Sbjct: 117 DPSNELYRKSLEVTAKAPELHMEIHKQGVDEQAMGAGPAGASASSNSKVSNKNKKSSDFR 176

Query: 94  YDIFGWVILAVGIVAWVGFAKSHMPPPPP 122
           YDIFGWVILAVGIV WVG AK+ +PPP P
Sbjct: 177 YDIFGWVILAVGIVTWVGMAKTQIPPPTP 205

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455850|ref|XP_004145663.1| PREDICTED: mitochondrial import receptor subunit TOM20-like [Cucumis sativus] gi|449502020|ref|XP_004161521.1| PREDICTED: mitochondrial import receptor subunit TOM20-like [Cucumis sativus]

 Score =  152 bits (383), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 85/146 (58%), Positives = 103/146 (70%), Gaps = 31/146 (21%)

Query: 1   MILDAISKLEEALM--------------------------DEAKEYFNKATLYFQQAVDE 34
           MILD+ISKLEEALM                          DEAKE+F+KAT+YF+QAV+E
Sbjct: 57  MILDSISKLEEALMINPKKHDALWCLGNAYTSHAFLNPNQDEAKEFFDKATIYFKQAVEE 116

Query: 35  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKY 94
           +P NE+Y KSLEV AKAPELH+EIHKHG  QQ  GA     +  S + ++KKK SSDLKY
Sbjct: 117 DPGNEIYLKSLEVTAKAPELHLEIHKHGFAQQATGA-----AEPSASSSTKKKNSSDLKY 171

Query: 95  DIFGWVILAVGIVAWVGFAKSHMPPP 120
           D+FGW+ILAVG+VAWVGFAKS++PPP
Sbjct: 172 DLFGWIILAVGLVAWVGFAKSNVPPP 197

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116784454|gb|ABK23348.1| unknown [Picea sitchensis]

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/147 (53%), Positives = 96/147 (65%), Gaps = 29/147 (19%)

Query: 1   MILDAISKLEEAL--------------------------MDEAKEYFNKATLYFQQAVDE 34
           M+ DA+SKLEEAL                           + AK YF  A+ YFQQAV++
Sbjct: 60  MVKDAVSKLEEALKVSPNKHDTLWCLGNAHTSHAFLIPEHEVAKIYFRMASQYFQQAVEQ 119

Query: 35  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKY 94
           +P+NELYQKSLE+  KAPELH+E+HK     Q++ A    SST S  K SKKKK+SDLKY
Sbjct: 120 DPTNELYQKSLELTEKAPELHLEVHKQIFNPQSVAAG---SSTVSNLKGSKKKKNSDLKY 176

Query: 95  DIFGWVILAVGIVAWVGFAKSHMPPPP 121
           DI GW++LAVGIVAWVG AKSH+PPPP
Sbjct: 177 DIMGWIVLAVGIVAWVGMAKSHVPPPP 203

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	126
TAIR|locus:2092045	202	TOM20-3 "AT3G27080" [Arabidops	0.793	0.495	0.490	2.4e-24
TAIR|locus:2015904	210	TOM20-2 "AT1G27390" [Arabidops	0.801	0.480	0.443	1.2e-19
TAIR|locus:2167737	187	TOM20-4 "AT5G40930" [Arabidops	0.682	0.459	0.4	1.3e-13

TAIR|locus:2092045 TOM20-3 "AT3G27080" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
 Identities = 50/102 (49%), Positives = 62/102 (60%)

Query:    16 EAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMXXXXXXX 75
             EAK  F+ AT +FQQAVDE+P N  Y KSLE+ AKAP+LH E +K GLG Q M       
Sbjct:    97 EAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYKQGLGSQPMGRVEAPA 156

Query:    76 XXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGFAKSHM 117
                            D KYD  GWVILA+G+VAW+ FAK+++
Sbjct:   157 PPSSKAVKNKKSS--DAKYDAMGWVILAIGVVAWISFAKANV 196

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0045040 "protein import into mitochondrial outer membrane" evidence=IEA

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=IDA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=TAS

GO:0006626 "protein targeting to mitochondrion" evidence=RCA;IMP;TAS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IDA;TAS

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TAIR|locus:2015904 TOM20-2 "AT1G27390" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 47/106 (44%), Positives = 63/106 (59%)

Query:    15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMXXXXXX 74
             +EAKE+F+KAT YFQ+A +E+P N+ Y+KSL+ + KAPELHM+    G+GQQ +      
Sbjct:    97 EEAKEHFDKATEYFQRAENEDPGNDTYRKSLDSSLKAPELHMQFMNQGMGQQILGGGGGG 156

Query:    75 XXXXXXXXXXXXXXX-----XDLKYDIFGWVILAVGIVAWVGFAKS 115
                                  +  YD+ GW+ILA GIVAWVG AKS
Sbjct:   157 GGGGMASSNVSQSSKKKKRNTEFTYDVCGWIILACGIVAWVGMAKS 202

GO:0005739 "mitochondrion" evidence=ISM;IEA;IDA

GO:0045040 "protein import into mitochondrial outer membrane" evidence=IEA

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=IDA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=TAS

GO:0006626 "protein targeting to mitochondrion" evidence=RCA;IMP;TAS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=TAS

GO:0046872 "metal ion binding" evidence=IDA

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2167737 TOM20-4 "AT5G40930" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 40/100 (40%), Positives = 53/100 (53%)

Query:    16 EAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMXXXXXXX 75
             EA + F KA+ +FQ AV+E+P +ELY+KSL +A+KAPELH                    
Sbjct:    95 EASDNFEKASQFFQLAVEEQPESELYRKSLTLASKAPELH--------------TGGTAG 140

Query:    76 XXXXXXXXXXXXXXXDLKYDIFGWVILAVGIVAWVGFAKS 115
                            + KYD+FGWVILA  +VAW+ FA S
Sbjct:   141 PSSNSAKTMKQKKTSEFKYDVFGWVILASYVVAWISFANS 180


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.388    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      126        96   0.00091  102 3  11 22  0.36    30
                                                     29  0.43    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  537 (57 KB)
  Total size of DFA:  109 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.06u 0.12s 10.18t   Elapsed:  00:00:01
  Total cpu time:  10.06u 0.12s 10.18t   Elapsed:  00:00:01
  Start:  Fri May 10 16:27:04 2013   End:  Fri May 10 16:27:05 2013

GO:0005739 "mitochondrion" evidence=ISM;IEA

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=IDA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=TAS

GO:0006626 "protein targeting to mitochondrion" evidence=RCA;IMP;TAS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=TAS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	126
pfam06552	186	pfam06552, TOM20_plant, Plant specific mitochondri	5e-48

>gnl|CDD|191555 pfam06552, TOM20_plant, Plant specific mitochondrial import receptor subunit TOM20

 Score =  152 bits (384), Expect = 5e-48
 Identities = 80/140 (57%), Positives = 90/140 (64%), Gaps = 29/140 (20%)

Query: 1   MILDAISKLEEAL--------------------------MDEAKEYFNKATLYFQQAVDE 34
           MI DAISKLEEAL                            EAKE F+KAT +FQQAVDE
Sbjct: 50  MINDAISKLEEALVINPKKHDALWCIGNAYTSFAFLTPDPTEAKENFDKATQFFQQAVDE 109

Query: 35  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKY 94
           +P N+LY+KSLE+AAKAPELH E HK GLG Q MG    PSS S   KT K KKSSD KY
Sbjct: 110 QPDNDLYRKSLEMAAKAPELHTEFHKQGLGSQIMGG-EAPSSPSQ--KTVKNKKSSDFKY 166

Query: 95  DIFGWVILAVGIVAWVGFAK 114
           D+ GWVILA+G+VAW+ FAK
Sbjct: 167 DVMGWVILAIGVVAWISFAK 186

This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria. Length = 186

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	126
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	100.0
KOG0553	304	consensus TPR repeat-containing protein [General f	98.49
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.37
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.19
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.94
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	96.85
KOG1129	478	consensus TPR repeat-containing protein [General f	96.76
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.75
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.73
PF04212	69	MIT: MIT (microtubule interacting and transport) d	96.69
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	96.65
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.48
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.42
cd02656	75	MIT MIT: domain contained within Microtubule Inter	96.32
PRK15359	144	type III secretion system chaperone protein SscB;	96.18
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.1
PF13428	44	TPR_14: Tetratricopeptide repeat	96.1
TIGR02552	135	LcrH_SycD type III secretion low calcium response	96.04
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.01
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	95.94
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	95.92
PF13371	73	TPR_9: Tetratricopeptide repeat	95.88
PRK15359	144	type III secretion system chaperone protein SscB;	95.75
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	95.64
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.49
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	95.49
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	95.44
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	95.41
PRK10370	198	formate-dependent nitrite reductase complex subuni	95.33
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	95.02
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	94.96
TIGR02552	135	LcrH_SycD type III secretion low calcium response	94.95
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	94.76
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	94.61
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	94.38
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	94.3
PRK11189	296	lipoprotein NlpI; Provisional	94.24
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	94.18
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	93.93
PF13431	34	TPR_17: Tetratricopeptide repeat	93.88
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	93.68
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	93.66
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	93.49
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	93.34
PRK12370	553	invasion protein regulator; Provisional	93.33
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	93.29
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	93.22
PRK12370	553	invasion protein regulator; Provisional	93.15
KOG1125	579	consensus TPR repeat-containing protein [General f	93.01
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	92.93
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	92.66
KOG3364	149	consensus Membrane protein involved in organellar	92.5
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	92.42
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	92.36
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	92.26
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	92.09
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	91.9
PRK11189	296	lipoprotein NlpI; Provisional	91.62
KOG1126	638	consensus DNA-binding cell division cycle control	91.56
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	91.55
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	91.52
PTZ00441	576	sporozoite surface protein 2 (SSP2); Provisional	91.29
PRK10370	198	formate-dependent nitrite reductase complex subuni	91.17
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	91.13
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	91.03
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	90.9
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	90.83
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	90.7
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	90.53
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	90.49
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	90.37
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	89.94
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	89.65
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	89.36
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	89.28
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	88.9
PRK15331	165	chaperone protein SicA; Provisional	88.89
KOG0553	304	consensus TPR repeat-containing protein [General f	88.69
PF13371	73	TPR_9: Tetratricopeptide repeat	88.24
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	87.45
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	87.4
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	87.27
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	87.26
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	87.25
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	87.03
PF02609	53	Exonuc_VII_S: Exonuclease VII small subunit; Inter	86.87
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	86.63
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	86.4
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	86.02
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	85.99
PRK11788	389	tetratricopeptide repeat protein; Provisional	85.89
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	85.16
KOG3060	289	consensus Uncharacterized conserved protein [Funct	84.84
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	84.37
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	83.45
KOG1126	638	consensus DNA-binding cell division cycle control	83.41
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	83.06
TIGR01280	67	xseB exodeoxyribonuclease VII, small subunit. This	82.88
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	82.81
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	82.45
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	82.41
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	82.29
PRK10803	263	tol-pal system protein YbgF; Provisional	81.89
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	81.49
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	80.94
PRK00977	80	exodeoxyribonuclease VII small subunit; Provisiona	80.83
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	80.42
PF03704	146	BTAD: Bacterial transcriptional activator domain;	80.11

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=100.00  E-value=4.7e-56  Score=350.67  Aligned_cols=111  Identities=80%  Similarity=1.175  Sum_probs=60.2

Q ss_pred             ChHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchh
Q 033160            1 MILDAISKLEEALM--------------------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPEL   54 (126)
Q Consensus         1 Mi~dAisKleeAL~--------------------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPel   54 (126)
                      ||+|||+||||||.                          .+|+++|++|.+|||||+++||+|++|||||||++|||||
T Consensus        50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~l  129 (186)
T PF06552_consen   50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPEL  129 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHH
Confidence            79999999999999                          7999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccccccCCCCCCCCCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHhhh
Q 033160           55 HMEIHKHGLGQQTMGASTGPSSTSSGAKTSKKKKSSDLKYDIFGWVILAVGIVAWVGFAK  114 (126)
Q Consensus        55 H~ei~kq~~~qq~~~~~~~g~~~~s~~k~~kkkk~sDf~YDv~GWviLa~givaWvg~Ak  114 (126)
                      |+|||||+++||.+|+   +++++++.+++||||+|||||||+|||||++||||||||||
T Consensus       130 h~e~~~~~~~~q~~~~---~~~~~~~~~~~k~kk~sd~~ydv~gwvil~~givawv~~ak  186 (186)
T PF06552_consen  130 HMEIHKQGLGQQAMGG---ASSSSSSAKSSKKKKSSDFKYDVFGWVILAVGIVAWVGMAK  186 (186)
T ss_dssp             HHHHHHSSS---------------------------------------------------
T ss_pred             HHHHHHHHhhhhhccC---CCCCCCCccccccccccchhhhhcchHHHHHHHHHHHhhcC
Confidence            9999999999998655   46666778999999999999999999999999999999997

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.49  E-value=1.7e-07  Score=79.52  Aligned_cols=49  Identities=29%  Similarity=0.417  Sum_probs=40.8

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhc
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAK   50 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~K   50 (126)
                      -.+||.-.|-||.               --+++.|++|.++|||||++||+||.||++|++|.+
T Consensus       131 ~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~  194 (304)
T KOG0553|consen  131 YEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQ  194 (304)
T ss_pred             hHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence            3466666666666               456788999999999999999999999999999953

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.37  E-value=0.00033  Score=38.99  Aligned_cols=26  Identities=23%  Similarity=0.322  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCc
Q 033160           13 LMDEAKEYFNKATLYFQQAVDEEPSN   38 (126)
Q Consensus        13 L~~~A~~~f~kA~~~FqkAvd~dP~N   38 (126)
                      ..-..++.|++|.+||++|+++||+|
T Consensus         9 ~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    9 NAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            33456788999999999999999987

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.19  E-value=0.00022  Score=39.10  Aligned_cols=24  Identities=25%  Similarity=0.463  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCc
Q 033160           15 DEAKEYFNKATLYFQQAVDEEPSN   38 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP~N   38 (126)
                      -..++.|++|.+||++|+.++|+|
T Consensus        11 ~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen   11 YYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHhCCHHHHHHHHHHHHHHCcCC
Confidence            445678999999999999999987

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.94  E-value=0.0013  Score=40.61  Aligned_cols=29  Identities=24%  Similarity=0.330  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160           17 AKEYFNKATLYFQQAVDEEPSNELYQKSL   45 (126)
Q Consensus        17 A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL   45 (126)
                      ..+.|++|..+|+++++.+|+|.-+.-.|
T Consensus         9 ~~g~~~~A~~~~~~~l~~~P~~~~a~~~l   37 (65)
T PF13432_consen    9 QQGDYDEAIAAFEQALKQDPDNPEAWYLL   37 (65)
T ss_dssp             HCTHHHHHHHHHHHHHCCSTTHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            34556666666666666666665444333

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=96.85  E-value=0.0059  Score=40.94  Aligned_cols=44  Identities=27%  Similarity=0.409  Sum_probs=37.8

Q ss_pred             ChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160            1 MILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL   45 (126)
Q Consensus         1 Mi~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL   45 (126)
                      ||+.|+.-+.+|+.       .+|.++|..|.++|.+++..+| |+..++.|
T Consensus         2 ~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~-~~~~k~~~   52 (75)
T cd02678           2 FLQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEK-NPKSKESI   52 (75)
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCC-CHHHHHHH
Confidence            57899999999988       8999999999999999999999 55555554

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.76  E-value=0.0041  Score=55.44  Aligned_cols=52  Identities=29%  Similarity=0.365  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHHHhhcCchhHHHHHHh-ccccc
Q 033160           15 DEAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLEVAAKAPELHMEIHKH-GLGQQ   66 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe~a~KAPelH~ei~kq-~~~qq   66 (126)
                      .||++.+++|.++|+.+++.+|.|-                     .||+-|.|-...|||..+|--- +.+||
T Consensus       300 ~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ  373 (478)
T KOG1129|consen  300 HEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQ  373 (478)
T ss_pred             HHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcc
Confidence            8999999999999999999999985                     8999999999999999988652 24454

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.75  E-value=0.0015  Score=36.09  Aligned_cols=24  Identities=29%  Similarity=0.491  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCc
Q 033160           15 DEAKEYFNKATLYFQQAVDEEPSN   38 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP~N   38 (126)
                      -..++.|++|.+||++|++++|+|
T Consensus        11 y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen   11 YEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCC
Confidence            445788999999999999999976

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.73  E-value=0.0029  Score=38.99  Aligned_cols=25  Identities=20%  Similarity=0.492  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCcHHHHH
Q 033160           19 EYFNKATLYFQQAVDEEPSNELYQK   43 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne~YkK   43 (126)
                      +.|++|.+++++++..+|+|..|+.
T Consensus        39 g~~~~A~~~l~~~~~~~~~~~~~~~   63 (68)
T PF14559_consen   39 GQYDEAEELLERLLKQDPDNPEYQQ   63 (68)
T ss_dssp             T-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHH
Confidence            3445555555555555555544443

...

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=96.69  E-value=0.012  Score=38.24  Aligned_cols=39  Identities=31%  Similarity=0.440  Sum_probs=34.9

Q ss_pred             ChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            1 MILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         1 Mi~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ||+.|+.-+.+|+.       .+|.++|.+|.++|.+++..+|+.+
T Consensus         1 y~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~   46 (69)
T PF04212_consen    1 YLDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPE   46 (69)
T ss_dssp             -HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHH
Confidence            68999999999999       9999999999999999999998444

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=96.65  E-value=0.015  Score=38.23  Aligned_cols=59  Identities=24%  Similarity=0.351  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcH----HHHHHHHHhhcCchhHHHHHH
Q 033160            2 ILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNE----LYQKSLEVAAKAPELHMEIHK   60 (126)
Q Consensus         2 i~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne----~YkKsLe~a~KAPelH~ei~k   60 (126)
                      ++.|+.-+..|+.       .+|.++|.+|.++|.+++..+|+.+    +-.|..+.-.+|=+|...+..
T Consensus         5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~raE~lk~~~~~   74 (77)
T smart00745        5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRAEEIKKSLLE   74 (77)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5678888888888       8999999999999999999998633    233444555666666665543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.48  E-value=0.0063  Score=37.70  Aligned_cols=42  Identities=19%  Similarity=0.245  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160            4 DAISKLEEALMDEAKEYFNKATLYFQQAVDEEPSNELYQKSL   45 (126)
Q Consensus         4 dAisKleeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL   45 (126)
                      +|..=+..|..-.-.+.|++|..||++|++.||+|....-++
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~   43 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNL   43 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            344445556666667889999999999999999987443333

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.42  E-value=0.0091  Score=36.96  Aligned_cols=35  Identities=23%  Similarity=0.274  Sum_probs=29.3

Q ss_pred             hHHHHHHHHHHHH---------------HHHHH-HHHHHHHHHHHHHhcCC
Q 033160            2 ILDAISKLEEALM---------------DEAKE-YFNKATLYFQQAVDEEP   36 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~-~f~kA~~~FqkAvd~dP   36 (126)
                      .++|+.-|++||.               -.-++ .|++|.++|++|+.+||
T Consensus        19 ~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   19 YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            3678899999998               34445 79999999999999998

...

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=96.32  E-value=0.034  Score=36.68  Aligned_cols=44  Identities=27%  Similarity=0.372  Sum_probs=36.9

Q ss_pred             ChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160            1 MILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL   45 (126)
Q Consensus         1 Mi~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL   45 (126)
                      |++.|+..+..|+.       ++|.++|..|.+.|.+++..+|+ +..++.|
T Consensus         2 ~~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~-~~~k~~l   52 (75)
T cd02656           2 LLQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKE-PKLRKLL   52 (75)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCC-HHHHHHH
Confidence            57889999999988       89999999999999999999986 4444443

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=96.18  E-value=0.014  Score=42.43  Aligned_cols=44  Identities=11%  Similarity=0.010  Sum_probs=30.3

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL   45 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL   45 (126)
                      ..+|+.-|+.|+.               -...+.|++|..+|++|+.++|+|....-+|
T Consensus        40 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~l   98 (144)
T PRK15359         40 YSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQT   98 (144)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            3567777777766               5667777888888888888888776444333

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.10  E-value=0.016  Score=48.28  Aligned_cols=37  Identities=19%  Similarity=0.175  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++|+.-+++||.               -..++.|++|..+|++|++++|+|.
T Consensus        19 ~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~   70 (356)
T PLN03088         19 ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA   70 (356)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH
Confidence            456666666665               2233455666666666666666655

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.10  E-value=0.0059  Score=36.37  Aligned_cols=31  Identities=13%  Similarity=0.118  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160           15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSL   45 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL   45 (126)
                      -...+.+++|.++|+++|..+|+|...+..|
T Consensus        11 ~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L   41 (44)
T PF13428_consen   11 YRRLGQPDEAERLLRRALALDPDDPEAWRAL   41 (44)
T ss_pred             HHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence            4567889999999999999999998766554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=96.04  E-value=0.014  Score=39.78  Aligned_cols=37  Identities=11%  Similarity=0.109  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++|+.-|+.++.               -...+.|++|..+|+++++.+|+|.
T Consensus        34 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~   85 (135)
T TIGR02552        34 DEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP   85 (135)
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence            566666766665               2334567778888888888887775

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.01  E-value=0.028  Score=41.18  Aligned_cols=33  Identities=36%  Similarity=0.587  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhh
Q 033160           15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA   49 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~   49 (126)
                      ++|+.+|++|.+||++++..+|+|  |..++..-+
T Consensus       130 ~~A~~~~~~A~~~~~~a~~~~p~~--~~~~~~~~~  162 (172)
T PRK02603        130 DEAEALFDKAAEYWKQAIRLAPNN--YIEAQNWLK  162 (172)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCchh--HHHHHHHHH
Confidence            678888999999999999999998  766665433

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.94  E-value=0.014  Score=55.54  Aligned_cols=59  Identities=24%  Similarity=0.412  Sum_probs=48.7

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSL   45 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsL   45 (126)
                      |+.||-++|||++               -+....||+|..||++|+.+-|++-                     +||++|
T Consensus       234 i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral  313 (966)
T KOG4626|consen  234 IWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL  313 (966)
T ss_pred             HHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHH
Confidence            6899999999998               4556789999999999999999875                     899999


Q ss_pred             HHhhcCchhHHHHHH
Q 033160           46 EVAAKAPELHMEIHK   60 (126)
Q Consensus        46 e~a~KAPelH~ei~k   60 (126)
                      ++--.-|+-+-.+-.
T Consensus       314 ~~~P~F~~Ay~Nlan  328 (966)
T KOG4626|consen  314 ELQPNFPDAYNNLAN  328 (966)
T ss_pred             hcCCCchHHHhHHHH
Confidence            887666666655543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.92  E-value=0.018  Score=52.51  Aligned_cols=55  Identities=24%  Similarity=0.320  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh---hcCchhHHH
Q 033160            3 LDAISKLEEALM--------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA---AKAPELHME   57 (126)
Q Consensus         3 ~dAisKleeAL~--------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a---~KAPelH~e   57 (126)
                      .|+|+=||.+|.              -.|-|.+++|.++|++||.+||.|+-=++-|+.-   ++-|.--.|
T Consensus       455 ~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~~~DATdE  526 (564)
T KOG1174|consen  455 KDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDDESDATDE  526 (564)
T ss_pred             chHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccCCCCcccc
Confidence            589999999999              5789999999999999999999999888887544   344544444

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.88  E-value=0.044  Score=34.10  Aligned_cols=43  Identities=19%  Similarity=0.125  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL   45 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL   45 (126)
                      +.|+.-+|.+|.               -...+.|++|.++|+++++.+|++..-....
T Consensus        12 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~   69 (73)
T PF13371_consen   12 EEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR   69 (73)
T ss_pred             HHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            455556666665               5566788899999999999999887665544

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=95.75  E-value=0.051  Score=39.42  Aligned_cols=45  Identities=20%  Similarity=0.247  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHHHhhcCchhHHHHH
Q 033160           15 DEAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLEVAAKAPELHMEIH   59 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe~a~KAPelH~ei~   59 (126)
                      -.-++.|++|.++|++|++.+|+|-                     .|++++++.-..|+.|..+=
T Consensus        34 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg   99 (144)
T PRK15359         34 SWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG   99 (144)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            3445667888888888888888876                     56666666666666665443

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=95.64  E-value=0.067  Score=36.45  Aligned_cols=43  Identities=23%  Similarity=0.302  Sum_probs=35.3

Q ss_pred             hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160            2 ILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL   45 (126)
Q Consensus         2 i~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL   45 (126)
                      ++.||.-+.+|+.       .+|..+|..|.++|.+++.-+| |+.-|..|
T Consensus         3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~-~~~~k~~l   52 (75)
T cd02684           3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYET-DAQRKEAL   52 (75)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCC-CHHHHHHH
Confidence            5778888888888       8999999999999999999996 55445444

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>smart00028 TPR Tetratricopeptide repeats

Probab=95.49  E-value=0.019  Score=27.94  Aligned_cols=24  Identities=21%  Similarity=0.422  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCc
Q 033160           15 DEAKEYFNKATLYFQQAVDEEPSN   38 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP~N   38 (126)
                      -.-.+.|++|..+|++++.++|++
T Consensus        11 ~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028       11 YLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             HHHHhhHHHHHHHHHHHHccCCCC
Confidence            345688999999999999999974

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=95.49  E-value=0.091  Score=40.99  Aligned_cols=44  Identities=9%  Similarity=0.147  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHHHhhcCchhHHHHH
Q 033160           15 DEAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLEVAAKAPELHMEIH   59 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe~a~KAPelH~ei~   59 (126)
                      .+++..|++|.+||.+|+-++|||.                     .++.+++.|...||. .+|+
T Consensus        79 ~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~-~~l~  143 (157)
T PRK15363         79 CQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEH-QILR  143 (157)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhH-HHHH
Confidence            8999999999999999999999887                     677777888655554 3443

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=95.44  E-value=0.13  Score=35.35  Aligned_cols=58  Identities=16%  Similarity=0.208  Sum_probs=41.4

Q ss_pred             ChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcH---HHHHHH-HHhhcCchhHHHH
Q 033160            1 MILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNE---LYQKSL-EVAAKAPELHMEI   58 (126)
Q Consensus         1 Mi~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne---~YkKsL-e~a~KAPelH~ei   58 (126)
                      +.+.|+.=+..|..       .+|+.+|.+|.++|.+++..+||..   .|+.-. +.-..|=+|...|
T Consensus         2 ~~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~Lk~~l   70 (77)
T cd02683           2 LELAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEAIKKRL   70 (77)
T ss_pred             chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678888888887       9999999999999999999999554   333322 3334555555444

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=95.41  E-value=0.034  Score=34.22  Aligned_cols=37  Identities=27%  Similarity=0.477  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++|+.-|+++|.               -...+.+++|..+|+++++.+|+|+
T Consensus        14 ~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen   14 DEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            567888888877               4566789999999999999999985

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=95.33  E-value=0.036  Score=42.63  Aligned_cols=46  Identities=15%  Similarity=0.169  Sum_probs=38.0

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV   47 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~   47 (126)
                      .++++..|+.+|.               -.+.+.|++|.++|++|+..+|+|.-..-.+-.
T Consensus        55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~  115 (198)
T PRK10370         55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALAT  115 (198)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3678888998888               457788999999999999999999876666543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=95.02  E-value=0.032  Score=34.25  Aligned_cols=28  Identities=18%  Similarity=0.296  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNELYQKSL   45 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne~YkKsL   45 (126)
                      .+.|++|.++|+++++.+|+|.-.+-.|
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~l   31 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLL   31 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            4689999999999999999998544433

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=94.96  E-value=0.19  Score=28.78  Aligned_cols=22  Identities=18%  Similarity=0.376  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .+.+++|.++|+++++..|++.
T Consensus        47 ~~~~~~a~~~~~~~~~~~~~~~   68 (100)
T cd00189          47 LGKYEEALEDYEKALELDPDNA   68 (100)
T ss_pred             HHHHHHHHHHHHHHHhCCCcch
Confidence            3566777777777777777665

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=94.95  E-value=0.25  Score=33.60  Aligned_cols=28  Identities=21%  Similarity=0.194  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160           12 ALMDEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        12 AL~~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      |..-...+.|++|.++|++++..+|+|.
T Consensus        24 a~~~~~~~~~~~A~~~~~~~~~~~p~~~   51 (135)
T TIGR02552        24 AYNLYQQGRYDEALKLFQLLAAYDPYNS   51 (135)
T ss_pred             HHHHHHcccHHHHHHHHHHHHHhCCCcH
Confidence            3334455667778888888888888775

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=94.76  E-value=0.1  Score=37.86  Aligned_cols=27  Identities=30%  Similarity=0.566  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 033160           15 DEAKEYFNKATLYFQQAVDEEPSNELY   41 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~Y   41 (126)
                      .+|+.+|++|..+|++++..+|+|..+
T Consensus       130 ~~A~~~~~~a~~~~~~a~~~~p~~~~~  156 (168)
T CHL00033        130 EIAEAWFDQAAEYWKQAIALAPGNYIE  156 (168)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcccHHH
Confidence            677888999999999999999987643

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=94.61  E-value=0.095  Score=45.66  Aligned_cols=37  Identities=24%  Similarity=0.256  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++|+.-|++||.               -..++.|++|..||++|++++|+|.
T Consensus       382 ~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~  433 (615)
T TIGR00990       382 DKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI  433 (615)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence            456666666666               2334568888888999999998875

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=94.38  E-value=0.079  Score=44.21  Aligned_cols=28  Identities=21%  Similarity=0.307  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 033160           15 DEAKEYFNKATLYFQQAVDEEPSNELYQ   42 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~Yk   42 (126)
                      --..+.|++|.++|+++++.+|+++.|.
T Consensus       338 ~~~~~~~~~A~~~le~al~~~P~~~~~~  365 (398)
T PRK10747        338 LMKHGEWQEASLAFRAALKQRPDAYDYA  365 (398)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCHHHHH
Confidence            3344569999999999999999999654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=94.30  E-value=0.17  Score=44.09  Aligned_cols=38  Identities=24%  Similarity=0.258  Sum_probs=30.0

Q ss_pred             hHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            2 ILDAISKLEEALM----------------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         2 i~dAisKleeAL~----------------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      +++|+.-|+.||.                      -+..+.|++|.++|++|+.++|+|.
T Consensus       483 ~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~  542 (615)
T TIGR00990       483 FDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD  542 (615)
T ss_pred             HHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence            3567777777776                      0124788999999999999999998

>PRK11189 lipoprotein NlpI; Provisional

Probab=94.24  E-value=0.09  Score=42.18  Aligned_cols=37  Identities=19%  Similarity=0.222  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++|+.-|++||.               -...+.|++|.++|++|++++|+|.
T Consensus        81 ~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~  132 (296)
T PRK11189         81 ALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  132 (296)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            466777777776               3345667888888888888888887

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=94.18  E-value=0.13  Score=42.91  Aligned_cols=47  Identities=13%  Similarity=0.231  Sum_probs=38.1

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA   48 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a   48 (126)
                      .++|+.-|+.||.               -..++.|++|..+|++|+.++|+|...+.-+..+
T Consensus        52 ~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~  113 (356)
T PLN03088         52 FTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKEC  113 (356)
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3578888888887               4456778999999999999999999777766555

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=93.93  E-value=0.13  Score=47.16  Aligned_cols=36  Identities=19%  Similarity=0.473  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHHHhhc
Q 033160           15 DEAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLEVAAK   50 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe~a~K   50 (126)
                      --.+.-|+||..|||+||.+||.--                     .||.+++|+..
T Consensus       340 YSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~  396 (559)
T KOG1155|consen  340 YSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR  396 (559)
T ss_pred             HHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch
Confidence            4567779999999999999999643                     89999988754

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=93.88  E-value=0.042  Score=31.90  Aligned_cols=21  Identities=19%  Similarity=0.366  Sum_probs=17.4

Q ss_pred             HHHHHHhcCCCcHHHHHHHHH
Q 033160           27 YFQQAVDEEPSNELYQKSLEV   47 (126)
Q Consensus        27 ~FqkAvd~dP~Ne~YkKsLe~   47 (126)
                      ||+||+++||+|-...-+|-.
T Consensus         1 ~y~kAie~~P~n~~a~~nla~   21 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLAN   21 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHH
Confidence            799999999999877666643

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=93.68  E-value=0.19  Score=34.83  Aligned_cols=38  Identities=26%  Similarity=0.206  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNEL   40 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~   40 (126)
                      ++|+..+++++.               -...+.|++|.++|+++++.+|++..
T Consensus        48 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~  100 (234)
T TIGR02521        48 EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD  100 (234)
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence            567777777776               22345678899999999999888764

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=93.66  E-value=0.15  Score=39.46  Aligned_cols=32  Identities=19%  Similarity=0.195  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 033160           15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSLE   46 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe   46 (126)
                      ....+.+++|.++|++||+.+|+|+..+.+|=
T Consensus       156 ~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~  187 (280)
T PF13429_consen  156 YEQLGDPDKALRDYRKALELDPDDPDARNALA  187 (280)
T ss_dssp             HHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            34556789999999999999999998888773

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=93.49  E-value=0.16  Score=32.17  Aligned_cols=16  Identities=31%  Similarity=0.538  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHHh
Q 033160           18 KEYFNKATLYFQQAVD   33 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd   33 (126)
                      .+.|++|.++|+||++
T Consensus        59 ~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen   59 LGDYEEALEYYQKALD   74 (78)
T ss_dssp             TTHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHh
Confidence            3445555555555554

...

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=93.34  E-value=0.18  Score=46.95  Aligned_cols=50  Identities=24%  Similarity=0.285  Sum_probs=39.3

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcC
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKA   51 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KA   51 (126)
                      -++||.-++.||.               .--+++||+|.++|.|||-++|+|++=...|.+|-..
T Consensus       471 ~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  471 YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            4677888888887               4557889999999999999999997666666555443

>PRK12370 invasion protein regulator; Provisional

Probab=93.33  E-value=0.37  Score=42.08  Aligned_cols=19  Identities=21%  Similarity=0.088  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHhcCCCcH
Q 033160           21 FNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        21 f~kA~~~FqkAvd~dP~Ne   39 (126)
                      +++|..+|++|+++||+|.
T Consensus       320 ~~~A~~~~~~Al~ldP~~~  338 (553)
T PRK12370        320 MIKAKEHAIKATELDHNNP  338 (553)
T ss_pred             HHHHHHHHHHHHhcCCCCH
Confidence            5677777777777777765

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.29  E-value=0.2  Score=34.80  Aligned_cols=33  Identities=18%  Similarity=0.177  Sum_probs=20.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033160            1 MILDAISKLEEALMDEAKEYFNKATLYFQQAVD   33 (126)
Q Consensus         1 Mi~dAisKleeAL~~~A~~~f~kA~~~FqkAvd   33 (126)
                      |++.||.=+..|+...=.++|++|.++|.+||+
T Consensus         2 ~l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale   34 (75)
T cd02680           2 DLERAHFLVTQAFDEDEKGNAEEAIELYTEAVE   34 (75)
T ss_pred             CHHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHH
Confidence            578899999999984334444444444444443

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.22  E-value=0.31  Score=33.99  Aligned_cols=39  Identities=21%  Similarity=0.121  Sum_probs=33.1

Q ss_pred             hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcHH
Q 033160            2 ILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNEL   40 (126)
Q Consensus         2 i~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne~   40 (126)
                      .++|.+=+-.|..       .+|.-+|.+|.+.+.|++...||+.+
T Consensus         3 ~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~   48 (75)
T cd02682           3 EEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPT   48 (75)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHH
Confidence            4677777777877       88999999999999999999888774

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PRK12370 invasion protein regulator; Provisional

Probab=93.15  E-value=0.24  Score=43.19  Aligned_cols=37  Identities=19%  Similarity=0.167  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .+|+.-+++||.               ....+.|++|..+|++|++++|+|.
T Consensus       321 ~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~  372 (553)
T PRK12370        321 IKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISA  372 (553)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            456666777776               2334568888888888888888876

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.01  E-value=0.094  Score=48.44  Aligned_cols=22  Identities=23%  Similarity=0.415  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ..-||+|.+||+.||-.+|+|+
T Consensus       443 s~efdraiDcf~~AL~v~Pnd~  464 (579)
T KOG1125|consen  443 SGEFDRAVDCFEAALQVKPNDY  464 (579)
T ss_pred             chHHHHHHHHHHHHHhcCCchH
Confidence            3569999999999999999998

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=92.93  E-value=0.58  Score=32.03  Aligned_cols=39  Identities=21%  Similarity=0.267  Sum_probs=31.3

Q ss_pred             ChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            1 MILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         1 Mi~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      +++.|++=+.+|+.       .+|.++|..|.++|..++.-|+|..
T Consensus         2 ~l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~   47 (75)
T cd02677           2 YLEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPE   47 (75)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHH
Confidence            46788888888888       7888888888888888888886543

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=92.66  E-value=0.82  Score=40.85  Aligned_cols=63  Identities=25%  Similarity=0.360  Sum_probs=48.1

Q ss_pred             hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcH-----HHHHHHHHhhcCchhHHHHHHhccc
Q 033160            2 ILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNE-----LYQKSLEVAAKAPELHMEIHKHGLG   64 (126)
Q Consensus         2 i~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne-----~YkKsLe~a~KAPelH~ei~kq~~~   64 (126)
                      +|.||+-...|..       .+|..+|.-|.+||..||.-|-.|+     .--|.+|--+.|-+|-.-|..-..+
T Consensus         7 l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLdRAEkLK~yL~~~~~~   81 (439)
T KOG0739|consen    7 LQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLHALKYEANNKKAKDSIRAKFTEYLDRAEKLKAYLKEKEKG   81 (439)
T ss_pred             HHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            4666766666666       8899999999999999999998887     3445667777888887777765543

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=92.50  E-value=1.8  Score=34.18  Aligned_cols=82  Identities=21%  Similarity=0.273  Sum_probs=52.5

Q ss_pred             hHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchhHHHHHHhccc
Q 033160            2 ILDAISKLEEALM-----------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLG   64 (126)
Q Consensus         2 i~dAisKleeAL~-----------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPelH~ei~kq~~~   64 (126)
                      |++.|.=||+-+.                 .-=+..|++|..|-.-.|+.||+|.-=+.-=++      +..+|.|-|+-
T Consensus        51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~------ied~itkegli  124 (149)
T KOG3364|consen   51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKET------IEDKITKEGLI  124 (149)
T ss_pred             HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHH------HHHHHhhccee
Confidence            5677888888885                 223467899999999999999999743221121      23456666641


Q ss_pred             ccccCCCCCCCCCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHhhhcC
Q 033160           65 QQTMGASTGPSSTSSGAKTSKKKKSSDLKYDIFGWVILAVGIVAWVGFAKSH  116 (126)
Q Consensus        65 qq~~~~~~~g~~~~s~~k~~kkkk~sDf~YDv~GWviLa~givaWvg~Aks~  116 (126)
                      -..+                           ++|=+.-++|||+|.+++.++
T Consensus       125 Gm~v---------------------------~gGa~~~v~gl~g~~~~~~~~  149 (149)
T KOG3364|consen  125 GMVV---------------------------VGGAALAVGGLAGIASLAMRR  149 (149)
T ss_pred             eeee---------------------------hhhHHHHHHHHHHHHHHHhcC
Confidence            1110                           233344455699999998753

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=92.42  E-value=0.18  Score=32.64  Aligned_cols=29  Identities=28%  Similarity=0.303  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNELYQKSLE   46 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe   46 (126)
                      +..|++|..|-..+|+.||+|.-.+.-.+
T Consensus        14 l~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~   42 (53)
T PF14853_consen   14 LGEYEKARRYCDALLEIEPDNRQAQSLKE   42 (53)
T ss_dssp             TT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            45789999999999999999986654433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=92.36  E-value=0.079  Score=30.54  Aligned_cols=23  Identities=26%  Similarity=0.589  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHH--HhcCCCc
Q 033160           16 EAKEYFNKATLYFQQA--VDEEPSN   38 (126)
Q Consensus        16 ~A~~~f~kA~~~FqkA--vd~dP~N   38 (126)
                      ...+.|++|.+||++|  +..+|++
T Consensus        10 ~~~g~~~~Ai~~y~~aL~l~~~~~~   34 (36)
T PF13176_consen   10 RQQGDYEKAIEYYEQALALARDPED   34 (36)
T ss_dssp             HHCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred             HHcCCHHHHHHHHHHHHHhcccccC
Confidence            4567899999999994  4555554

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=92.26  E-value=0.48  Score=30.70  Aligned_cols=25  Identities=20%  Similarity=0.206  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160           15 DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      -...+.|++|..+|++++..+|++.
T Consensus        49 ~~~~~~~~~A~~~~~~~~~~~p~~~   73 (119)
T TIGR02795        49 YYAQGKYADAAKAFLAVVKKYPKSP   73 (119)
T ss_pred             HHhhccHHHHHHHHHHHHHHCCCCC
Confidence            6667789999999999999999874

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=92.09  E-value=0.35  Score=45.91  Aligned_cols=36  Identities=22%  Similarity=0.280  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCc
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSN   38 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~N   38 (126)
                      ++|+.-|++||.               -...+.|++|.++|++|++.+|+|
T Consensus       286 ~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~  336 (1157)
T PRK11447        286 GKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS  336 (1157)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence            456666666665               223344566666666666666654

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=91.90  E-value=0.2  Score=44.55  Aligned_cols=24  Identities=17%  Similarity=0.108  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcHHH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNELY   41 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne~Y   41 (126)
                      ...+++|.++|++|+.++|.+++|
T Consensus       466 ~G~~~eA~~~~~~A~~L~P~~pt~  489 (517)
T PRK10153        466 KGDNRLAADAYSTAFNLRPGENTL  489 (517)
T ss_pred             cCCHHHHHHHHHHHHhcCCCCchH
Confidence            334556666666666666665544

>PRK11189 lipoprotein NlpI; Provisional

Probab=91.62  E-value=0.46  Score=38.13  Aligned_cols=37  Identities=19%  Similarity=0.141  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            3 LDAISKLEEALM-------------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         3 ~dAisKleeAL~-------------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      +.+|..|.++|.                   -.....+++|..+|++|++.+|+|.
T Consensus        43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~   98 (296)
T PRK11189         43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA   98 (296)
T ss_pred             HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence            456777777774                   2334556789999999999999985

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=91.56  E-value=0.22  Score=46.49  Aligned_cols=37  Identities=30%  Similarity=0.361  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      +.||--|+.|+.               ..+.+-||+|..||++||..||.+=
T Consensus       438 ~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY  489 (638)
T KOG1126|consen  438 DTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY  489 (638)
T ss_pred             HHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh
Confidence            356777777776               6678888888888888888888764

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.55  E-value=1.2  Score=30.74  Aligned_cols=38  Identities=24%  Similarity=0.165  Sum_probs=30.3

Q ss_pred             hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            2 ILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         2 i~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .++||.=+..|..       .+|..+|.+|.++|.+++..+=.|+
T Consensus         3 e~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~   47 (76)
T cd02681           3 ERDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLND   47 (76)
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence            3567777788887       8999999999999999977773344

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=91.52  E-value=0.91  Score=25.86  Aligned_cols=21  Identities=14%  Similarity=0.343  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHhcCCC
Q 033160           17 AKEYFNKATLYFQQAVDEEPS   37 (126)
Q Consensus        17 A~~~f~kA~~~FqkAvd~dP~   37 (126)
                      ..+.+++|..+|+++++.+|+
T Consensus        80 ~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          80 KLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHhHHHHHHHHHHHHccCCC
Confidence            345577888888888887774

>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional

Probab=91.29  E-value=0.12  Score=47.64  Aligned_cols=35  Identities=46%  Similarity=0.598  Sum_probs=31.1

Q ss_pred             ccccccCCCcchhhhhHHHHHHHHHHHHHhhhcCC
Q 033160           83 TSKKKKSSDLKYDIFGWVILAVGIVAWVGFAKSHM  117 (126)
Q Consensus        83 ~~kkkk~sDf~YDv~GWviLa~givaWvg~Aks~~  117 (126)
                      ..||||+||=+|-|.|=||-++.+|+++|||-.-+
T Consensus       501 ~~~~~~~~~n~ykiagg~~~gla~~~~~g~~y~f~  535 (576)
T PTZ00441        501 EDKKKKSSNNGYKIAGGVIAGLALVGCVGFAYNFV  535 (576)
T ss_pred             ccccCcCCCCCceeecchhhhHHHhhhhhhheeee
Confidence            45777889999999999999999999999998544

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=91.17  E-value=0.4  Score=36.87  Aligned_cols=19  Identities=5%  Similarity=0.058  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHhcCCCcH
Q 033160           21 FNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        21 f~kA~~~FqkAvd~dP~Ne   39 (126)
                      +++|.++|++|+..||+|-
T Consensus       126 ~~~A~~~l~~al~~dP~~~  144 (198)
T PRK10370        126 TPQTREMIDKALALDANEV  144 (198)
T ss_pred             cHHHHHHHHHHHHhCCCCh
Confidence            4666666666666666653

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=91.13  E-value=0.54  Score=30.42  Aligned_cols=31  Identities=19%  Similarity=0.234  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            9 LEEALMDEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         9 leeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      +..+..-...+.|++|.++|++++..+|++.
T Consensus         6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~   36 (119)
T TIGR02795         6 YDAALLVLKAGDYADAIQAFQAFLKKYPKST   36 (119)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc
Confidence            3344445567889999999999999999873

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=91.03  E-value=1  Score=33.66  Aligned_cols=28  Identities=18%  Similarity=0.170  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 033160           19 EYFNKATLYFQQAVDEEPSNELYQKSLE   46 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne~YkKsLe   46 (126)
                      +.+++|.+.|+++++.+|+|..+...+.
T Consensus       129 ~~~~~A~~~~~~~~~~~p~~~~~~~a~~  156 (235)
T TIGR03302       129 TAAREAFEAFQELIRRYPNSEYAPDAKK  156 (235)
T ss_pred             HHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence            6789999999999999999987776663

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR00540 hemY_coli hemY protein

Probab=90.90  E-value=0.62  Score=38.90  Aligned_cols=48  Identities=15%  Similarity=0.130  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHH--HHHhcCCCcHHHHHHHHHhh--cCchhHHHHHHhccc
Q 033160           17 AKEYFNKATLYFQ--QAVDEEPSNELYQKSLEVAA--KAPELHMEIHKHGLG   64 (126)
Q Consensus        17 A~~~f~kA~~~Fq--kAvd~dP~Ne~YkKsLe~a~--KAPelH~ei~kq~~~   64 (126)
                      -.+.|++|.+||+  ++++.+|+++.|.---++..  ..++--.++-+++++
T Consensus       347 ~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       347 KHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             HcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3456889999999  69999999998774444442  334444555555543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=90.83  E-value=1.3  Score=35.89  Aligned_cols=25  Identities=24%  Similarity=0.417  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160           15 DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .+++..+++|..=|+.||.+||+.-
T Consensus        45 ~es~~miedAisK~eeAL~I~P~~h   69 (186)
T PF06552_consen   45 PESKKMIEDAISKFEEALKINPNKH   69 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred             chHHHHHHHHHHHHHHHHhcCCchH
Confidence            6899999999999999999999874

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=90.70  E-value=0.55  Score=43.52  Aligned_cols=24  Identities=17%  Similarity=0.231  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcH
Q 033160           16 EAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        16 ~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .++.-|++|.++|++++..+|+++
T Consensus       165 ~~~g~~~~A~~~y~~~~~~~p~~~  188 (694)
T PRK15179        165 DEIGQSEQADACFERLSRQHPEFE  188 (694)
T ss_pred             HHhcchHHHHHHHHHHHhcCCCcH
Confidence            344456666666666666666554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=90.53  E-value=0.76  Score=24.41  Aligned_cols=28  Identities=21%  Similarity=0.246  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 033160           11 EALMDEAKEYFNKATLYFQQAVDEEPSN   38 (126)
Q Consensus        11 eAL~~~A~~~f~kA~~~FqkAvd~dP~N   38 (126)
                      -|..-...+.+++|.++|++.++.-|++
T Consensus         6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    6 LARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            3344445678999999999999999974

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=90.49  E-value=0.45  Score=45.18  Aligned_cols=41  Identities=24%  Similarity=0.295  Sum_probs=33.1

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQ   42 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~Yk   42 (126)
                      .++|+..|++||.               ..+.+.|++|.++|++|++.+|+|..-.
T Consensus       367 ~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~  422 (1157)
T PRK11447        367 LAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAV  422 (1157)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            3578888888887               4455678999999999999999997433

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=90.37  E-value=0.47  Score=43.16  Aligned_cols=21  Identities=29%  Similarity=0.502  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCcH
Q 033160           19 EYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .+|.+|.+||..|+.+||+|-
T Consensus       263 G~y~~A~E~Yteal~idP~n~  283 (486)
T KOG0550|consen  263 GNYRKAYECYTEALNIDPSNK  283 (486)
T ss_pred             cchhHHHHHHHHhhcCCcccc
Confidence            467889999999999999886

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=89.94  E-value=0.78  Score=33.52  Aligned_cols=23  Identities=26%  Similarity=0.371  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCcHHH
Q 033160           19 EYFNKATLYFQQAVDEEPSNELY   41 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne~Y   41 (126)
                      +.|++|..+|++|++.+|+|...
T Consensus        86 g~~~~A~~~~~~al~~~p~~~~~  108 (172)
T PRK02603         86 GEHDKALEYYHQALELNPKQPSA  108 (172)
T ss_pred             CCHHHHHHHHHHHHHhCcccHHH
Confidence            34566666666666666665533

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=89.65  E-value=0.89  Score=32.90  Aligned_cols=22  Identities=14%  Similarity=0.173  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCC
Q 033160           15 DEAKEYFNKATLYFQQAVDEEP   36 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP   36 (126)
                      ...++.|++|..+|++|+.+.|
T Consensus        45 ~~~~g~~~~A~~~~~~al~l~~   66 (168)
T CHL00033         45 AQSEGEYAEALQNYYEAMRLEI   66 (168)
T ss_pred             HHHcCCHHHHHHHHHHHHhccc
Confidence            3334444455555555544433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=89.36  E-value=0.74  Score=34.37  Aligned_cols=38  Identities=13%  Similarity=0.041  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHhcCCCcHH
Q 033160            3 LDAISKLEEALM------------------DEAKEYFNKATLYFQQAVDEEPSNEL   40 (126)
Q Consensus         3 ~dAisKleeAL~------------------~~A~~~f~kA~~~FqkAvd~dP~Ne~   40 (126)
                      ++|+..|++++.                  -...+.|++|..+|+++++.+|+|..
T Consensus        50 ~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~  105 (235)
T TIGR03302        50 TEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD  105 (235)
T ss_pred             HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence            466777776665                  23345788888888999888887773

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=89.28  E-value=0.53  Score=29.71  Aligned_cols=18  Identities=22%  Similarity=0.431  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHhc
Q 033160           17 AKEYFNKATLYFQQAVDE   34 (126)
Q Consensus        17 A~~~f~kA~~~FqkAvd~   34 (126)
                      -+..|++|.+||++|+++
T Consensus        17 ~~~~~~~A~~~~~~al~~   34 (78)
T PF13424_consen   17 ELGRYDEALDYYEKALDI   34 (78)
T ss_dssp             HTT-HHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHH
Confidence            345567777777777654

...

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=88.90  E-value=0.94  Score=43.60  Aligned_cols=19  Identities=11%  Similarity=0.219  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHhcCCCcH
Q 033160           21 FNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        21 f~kA~~~FqkAvd~dP~Ne   39 (126)
                      |++|.++|++|++.+|+|.
T Consensus       659 ~eeAi~~l~~AL~l~P~~~  677 (987)
T PRK09782        659 IAQSREMLERAHKGLPDDP  677 (987)
T ss_pred             HHHHHHHHHHHHHhCCCCH
Confidence            4444444444444444444

>PRK15331 chaperone protein SicA; Provisional

Probab=88.89  E-value=1.5  Score=34.57  Aligned_cols=45  Identities=16%  Similarity=0.164  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcH--------HH---------HHHHHHhhcCchhHHHHHH
Q 033160           15 DEAKEYFNKATLYFQQAVDEEPSNE--------LY---------QKSLEVAAKAPELHMEIHK   60 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP~Ne--------~Y---------kKsLe~a~KAPelH~ei~k   60 (126)
                      .+.+..|++|.++|-.|..++++|.        +|         +++++++..-|+ |.+|..
T Consensus        81 ~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~~~-~~~l~~  142 (165)
T PRK15331         81 CQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNERTE-DESLRA  142 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHhCcc-hHHHHH
Confidence            7899999999999999999999886        33         567788877788 556655

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=88.69  E-value=0.41  Score=41.28  Aligned_cols=28  Identities=18%  Similarity=0.380  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 033160           15 DEAKEYFNKATLYFQQAVDEEPSNELYQ   42 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~Yk   42 (126)
                      .-..+.|++|.++|-+|++++|.|-.|-
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyy  118 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELDPTNAVYY  118 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcCCCcchHH
Confidence            3456789999999999999999999664

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=88.24  E-value=1.2  Score=27.44  Aligned_cols=22  Identities=18%  Similarity=0.433  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .+.|++|.+|+++++.++|++.
T Consensus         8 ~~~~~~A~~~~~~~l~~~p~~~   29 (73)
T PF13371_consen    8 QEDYEEALEVLERALELDPDDP   29 (73)
T ss_pred             CCCHHHHHHHHHHHHHhCcccc
Confidence            4678999999999999999987

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=87.45  E-value=1.3  Score=40.29  Aligned_cols=43  Identities=19%  Similarity=0.084  Sum_probs=33.1

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKS   44 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKs   44 (126)
                      .++|+.-|++++.               ....+.+++|.++|++|++++|+|..+.-.
T Consensus       375 ~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~  432 (765)
T PRK10049        375 LPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVE  432 (765)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence            4678888888777               445567999999999999999999543333

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=87.40  E-value=1.2  Score=37.37  Aligned_cols=25  Identities=16%  Similarity=0.178  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCcHHHHH
Q 033160           19 EYFNKATLYFQQAVDEEPSNELYQK   43 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne~YkK   43 (126)
                      +.|++|.++|++|++.+|+|....-
T Consensus       851 g~~~~A~~~~~~a~~~~~~~~~~~~  875 (899)
T TIGR02917       851 GEADRALPLLRKAVNIAPEAAAIRY  875 (899)
T ss_pred             CCHHHHHHHHHHHHhhCCCChHHHH
Confidence            4566777777777777776554333

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=87.27  E-value=1.2  Score=41.02  Aligned_cols=33  Identities=30%  Similarity=0.462  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcH----HHHHHHHH
Q 033160           15 DEAKEYFNKATLYFQQAVDEEPSNE----LYQKSLEV   47 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP~Ne----~YkKsLe~   47 (126)
                      ..++..|++|.++|++|++.||+|.    .|+++++.
T Consensus       436 l~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  436 LRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA  472 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            7888999999999999999999997    66777653

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=87.26  E-value=0.83  Score=42.11  Aligned_cols=47  Identities=19%  Similarity=0.315  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhh----------cCchhHHHHHHh
Q 033160           15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA----------KAPELHMEIHKH   61 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~----------KAPelH~ei~kq   61 (126)
                      ...++.|++|..-|.+.|+.||+|+.-+..|.-+.          .-|++|+.+-.+
T Consensus        80 ~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~  136 (539)
T KOG0548|consen   80 LFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANL  136 (539)
T ss_pred             HHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcC
Confidence            67889999999999999999999997777774332          236667665543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=87.25  E-value=1.3  Score=35.29  Aligned_cols=43  Identities=21%  Similarity=0.283  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHH--------HH----------HHHHHHHHHHHHHHHHhcCCCcH-----HHHHHH
Q 033160            3 LDAISKLEEALM--------DE----------AKEYFNKATLYFQQAVDEEPSNE-----LYQKSL   45 (126)
Q Consensus         3 ~dAisKleeAL~--------~~----------A~~~f~kA~~~FqkAvd~dP~Ne-----~YkKsL   45 (126)
                      ++|+.-||+.+.        ..          ..+.|++|..+|++.++..|+|+     .|++.+
T Consensus        49 ~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~  114 (243)
T PRK10866         49 KQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL  114 (243)
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence            467777777766        22          23457888888888888888887     666654

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=87.03  E-value=1.3  Score=39.91  Aligned_cols=33  Identities=24%  Similarity=0.312  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhh
Q 033160           17 AKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA   49 (126)
Q Consensus        17 A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~   49 (126)
                      .++.+++|...|+.-++.+|+|-.|-..|+.+.
T Consensus        50 kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~   82 (517)
T PF12569_consen   50 KLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL   82 (517)
T ss_pred             HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            346689999999999999999999999999887

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []

Probab=86.87  E-value=2.3  Score=26.99  Aligned_cols=30  Identities=20%  Similarity=0.376  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Q 033160            3 LDAISKLEEALM---------DEAKEYFNKATLYFQQAV   32 (126)
Q Consensus         3 ~dAisKleeAL~---------~~A~~~f~kA~~~FqkAv   32 (126)
                      ++++.+||+.+.         +++...|++|....++|-
T Consensus         2 Ee~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~   40 (53)
T PF02609_consen    2 EEAMERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQ   40 (53)
T ss_dssp             HHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            578888998888         899999999999888774

This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=86.63  E-value=1.7  Score=41.97  Aligned_cols=26  Identities=27%  Similarity=0.348  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCcHHHHHH
Q 033160           19 EYFNKATLYFQQAVDEEPSNELYQKS   44 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne~YkKs   44 (126)
                      +.+++|..+|++|++.+|+|..+..+
T Consensus       623 G~~deA~~~l~~AL~l~Pd~~~a~~n  648 (987)
T PRK09782        623 HNVPAAVSDLRAALELEPNNSNYQAA  648 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            34566666666666666666643333

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=86.40  E-value=2.4  Score=38.71  Aligned_cols=45  Identities=16%  Similarity=0.213  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH---HHHHHHHH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE---LYQKSLEV   47 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne---~YkKsLe~   47 (126)
                      .+|+.-|++||.               ....+.|++|...+++++..+|+|.   .|++.+++
T Consensus       410 ~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~~~  472 (765)
T PRK10049        410 RAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARARDV  472 (765)
T ss_pred             HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence            567777887777               5566689999999999999999998   44455543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=86.02  E-value=2.8  Score=32.52  Aligned_cols=31  Identities=16%  Similarity=0.282  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160           15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSL   45 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL   45 (126)
                      -..++.+++|..+|++++..+|+|.....++
T Consensus       224 ~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~  254 (280)
T PF13429_consen  224 YLQLGRYEEALEYLEKALKLNPDDPLWLLAY  254 (280)
T ss_dssp             HHHHT-HHHHHHHHHHHHHHSTT-HHHHHHH
T ss_pred             hcccccccccccccccccccccccccccccc
Confidence            4556778899999999999999888655554

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.99  E-value=1  Score=31.57  Aligned_cols=31  Identities=19%  Similarity=0.353  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcH------HHHHHHHHh
Q 033160           18 KEYFNKATLYFQQAVDEEPSNE------LYQKSLEVA   48 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne------~YkKsLe~a   48 (126)
                      +.+|++|.+|-.|||..|=...      .|+|.+++=
T Consensus         2 k~~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l   38 (79)
T cd02679           2 RGYYKQAFEEISKALRADEWGDKEQALAHYRKGLREL   38 (79)
T ss_pred             chHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHH
Confidence            4689999999999998776543      788877543

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=85.89  E-value=2.3  Score=33.65  Aligned_cols=30  Identities=17%  Similarity=0.216  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160           19 EYFNKATLYFQQAVDEEPSNELYQKSLEVA   48 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a   48 (126)
                      +.+++|..+|+++++.+|++..|..-+...
T Consensus       296 g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~  325 (389)
T PRK11788        296 EGPEAAQALLREQLRRHPSLRGFHRLLDYH  325 (389)
T ss_pred             CCHHHHHHHHHHHHHhCcCHHHHHHHHHHh
Confidence            457788888888888888887777555443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=85.16  E-value=2.8  Score=29.00  Aligned_cols=24  Identities=25%  Similarity=0.409  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcH
Q 033160           16 EAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        16 ~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ...+.+++|..+|+++++.+|++.
T Consensus       146 ~~~g~~~~A~~~~~~~~~~~~~~~  169 (234)
T TIGR02521       146 LKAGDFDKAEKYLTRALQIDPQRP  169 (234)
T ss_pred             HHcCCHHHHHHHHHHHHHhCcCCh
Confidence            344567788888888888888764

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.84  E-value=1.3  Score=38.21  Aligned_cols=32  Identities=22%  Similarity=0.568  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 033160           12 ALMDEAKEYFNKATLYFQQAVDEEPSNELYQK   43 (126)
Q Consensus        12 AL~~~A~~~f~kA~~~FqkAvd~dP~Ne~YkK   43 (126)
                      |+.-||.+++++|.+||..-|+.||.|..-+|
T Consensus        93 am~lEa~~~~~~A~e~y~~lL~ddpt~~v~~K  124 (289)
T KOG3060|consen   93 AMLLEATGNYKEAIEYYESLLEDDPTDTVIRK  124 (289)
T ss_pred             HHHHHHhhchhhHHHHHHHHhccCcchhHHHH
Confidence            45579999999999999999999999985443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=84.37  E-value=1.2  Score=40.10  Aligned_cols=23  Identities=22%  Similarity=0.368  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcH
Q 033160           17 AKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        17 A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .++.|++|..+|++|++++|++.
T Consensus        87 ~lGryeEAIa~f~rALeL~Pd~a  109 (453)
T PLN03098         87 SKGRVKDALAQFETALELNPNPD  109 (453)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCch
Confidence            34556666666666666666654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=83.45  E-value=1.5  Score=37.10  Aligned_cols=20  Identities=20%  Similarity=0.227  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHhcCCCcH
Q 033160           20 YFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        20 ~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ..+.|.+.|+||+.++|+|.
T Consensus        84 e~~~A~e~YrkAlsl~p~~G  103 (250)
T COG3063          84 ENDLADESYRKALSLAPNNG  103 (250)
T ss_pred             ChhhHHHHHHHHHhcCCCcc
Confidence            34555666666666666655

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=83.41  E-value=1.7  Score=40.83  Aligned_cols=25  Identities=20%  Similarity=0.336  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160           15 DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .+++...|+|.++|.+|+.+||.|.
T Consensus       533 ~~~~k~~d~AL~~~~~A~~ld~kn~  557 (638)
T KOG1126|consen  533 QHQLKRKDKALQLYEKAIHLDPKNP  557 (638)
T ss_pred             HHHhhhhhHHHHHHHHHHhcCCCCc
Confidence            7788889999999999999999998

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=83.06  E-value=3.2  Score=38.61  Aligned_cols=31  Identities=3%  Similarity=-0.186  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160           15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSL   45 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL   45 (126)
                      -..+++|++|..+++++|+.+|+|-.....+
T Consensus       130 L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~  160 (694)
T PRK15179        130 VKRQQGIEAGRAEIELYFSGGSSSAREILLE  160 (694)
T ss_pred             HHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence            4567889999999999999999998444333

>TIGR01280 xseB exodeoxyribonuclease VII, small subunit

Probab=82.88  E-value=3.9  Score=27.55  Aligned_cols=30  Identities=23%  Similarity=0.410  Sum_probs=25.6

Q ss_pred             hHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Q 033160            2 ILDAISKLEEALM---------DEAKEYFNKATLYFQQA   31 (126)
Q Consensus         2 i~dAisKleeAL~---------~~A~~~f~kA~~~FqkA   31 (126)
                      .++|+++||+-+.         +++...|+++..+.+.|
T Consensus         3 fEe~l~~Le~Iv~~LE~~~l~Leesl~lyeeG~~L~k~c   41 (67)
T TIGR01280         3 FEEALSELEQIVQKLESGDLALEEALNLFERGMALARRC   41 (67)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence            4788999999888         89999999998887766

This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=82.81  E-value=2.1  Score=38.65  Aligned_cols=47  Identities=30%  Similarity=0.390  Sum_probs=34.7

Q ss_pred             hHHHHHHHHHHHH-----HH-------------HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchh
Q 033160            2 ILDAISKLEEALM-----DE-------------AKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPEL   54 (126)
Q Consensus         2 i~dAisKleeAL~-----~~-------------A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPel   54 (126)
                      .++|++-++.||.     .+             .++.+++|.+||++|+++.  |..|.    .....|++
T Consensus        91 yeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels--n~~f~----~i~~DpdL  155 (453)
T PLN03098         91 VKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY--NLKFS----TILNDPDL  155 (453)
T ss_pred             HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--chhHH----HHHhCcch
Confidence            4789999999988     32             2566899999999999983  66675    23456654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=82.45  E-value=2.9  Score=37.73  Aligned_cols=23  Identities=13%  Similarity=-0.021  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcHH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNEL   40 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne~   40 (126)
                      .+.+++|.++|++|+..+|+|..
T Consensus       123 ~g~~~~Ai~~l~~Al~l~P~~~~  145 (656)
T PRK15174        123 SKQYATVADLAEQAWLAFSGNSQ  145 (656)
T ss_pred             cCCHHHHHHHHHHHHHhCCCcHH
Confidence            34456666666666666666653

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=82.41  E-value=1.5  Score=28.31  Aligned_cols=20  Identities=20%  Similarity=0.609  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHhcCCCc
Q 033160           19 EYFNKATLYFQQAVDEEPSN   38 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~N   38 (126)
                      +.|++|..+|+|+++.+|+|
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~   22 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTN   22 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGT
T ss_pred             ccHHHHHHHHHHHHHHCCCC
Confidence            46899999999999999964

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=82.29  E-value=3.3  Score=34.76  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .+.+++|..+|+++++.+|+|.
T Consensus       648 ~~~~~~A~~~~~~~~~~~~~~~  669 (899)
T TIGR02917       648 MKNYAKAITSLKRALELKPDNT  669 (899)
T ss_pred             cCCHHHHHHHHHHHHhcCCCCH
Confidence            4456777777777777777754

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=81.89  E-value=2.4  Score=34.66  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcHH
Q 033160           17 AKEYFNKATLYFQQAVDEEPSNEL   40 (126)
Q Consensus        17 A~~~f~kA~~~FqkAvd~dP~Ne~   40 (126)
                      .+..|++|..+|+++++..|++..
T Consensus       192 ~~g~~~~A~~~f~~vv~~yP~s~~  215 (263)
T PRK10803        192 NKGKKDDAAYYFASVVKNYPKSPK  215 (263)
T ss_pred             HcCCHHHHHHHHHHHHHHCCCCcc
Confidence            345567777777777777777653

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=81.49  E-value=4.7  Score=36.74  Aligned_cols=35  Identities=23%  Similarity=0.342  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcC
Q 033160           17 AKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKA   51 (126)
Q Consensus        17 A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KA   51 (126)
                      +-+.||.|..-||+|++.||+|.--|.-||-|.+.
T Consensus       353 ~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrl  387 (504)
T KOG0624|consen  353 GDEMYDDAIHDYEKALELNESNTRAREGLERAKRL  387 (504)
T ss_pred             hhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence            34789999999999999999999777777666543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=80.94  E-value=3  Score=37.58  Aligned_cols=24  Identities=21%  Similarity=0.187  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCcHHHH
Q 033160           19 EYFNKATLYFQQAVDEEPSNELYQ   42 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne~Yk   42 (126)
                      +.|++|..+|++|++.+|+|....
T Consensus       298 g~~~eA~~~l~~al~l~P~~~~a~  321 (656)
T PRK15174        298 GQNEKAIPLLQQSLATHPDLPYVR  321 (656)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH
Confidence            456777777777777777776433

>PRK00977 exodeoxyribonuclease VII small subunit; Provisional

Probab=80.83  E-value=4.9  Score=27.96  Aligned_cols=30  Identities=23%  Similarity=0.395  Sum_probs=24.7

Q ss_pred             hHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Q 033160            2 ILDAISKLEEALM---------DEAKEYFNKATLYFQQA   31 (126)
Q Consensus         2 i~dAisKleeAL~---------~~A~~~f~kA~~~FqkA   31 (126)
                      .++|+.+||+.+.         +++...|+++....+.|
T Consensus        12 fEea~~~LEeIv~~LE~~~l~Lees~~lyeeg~~L~k~C   50 (80)
T PRK00977         12 FEEALAELEEIVTRLESGDLPLEESLAAFERGVALARQC   50 (80)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence            4688889998887         88888888888877766

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=80.42  E-value=3.6  Score=34.79  Aligned_cols=50  Identities=22%  Similarity=0.316  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHHHhhcCchhHHH
Q 033160            8 KLEEALMDEAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLEVAAKAPELHME   57 (126)
Q Consensus         8 KleeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe~a~KAPelH~e   57 (126)
                      +|+=||.=-..+.+..|+.-+.|||+.||++.                     .|||+|.++-+.-++|-+
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNN  108 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNN  108 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhh
Confidence            44444442233445677888888888888876                     788888888777777654

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=80.11  E-value=6.5  Score=27.56  Aligned_cols=33  Identities=18%  Similarity=0.244  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHH
Q 033160           15 DEAKEYFNKATLYFQQAVDEEPSNE-LYQKSLEV   47 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP~Ne-~YkKsLe~   47 (126)
                      ....+.|++|..+.++++..||-|| .|+.-++.
T Consensus        72 ~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~  105 (146)
T PF03704_consen   72 LLEAGDYEEALRLLQRALALDPYDEEAYRLLMRA  105 (146)
T ss_dssp             HHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            3455679999999999999999999 45444443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	126
1zu2_A	158	Solution Nmr Structure Of The Plant Tom20 Mitochond		4e-12

>pdb|1ZU2|A Chain A, Solution Nmr Structure Of The Plant Tom20 Mitochondrial Import Receptor From Arabidopsis Thaliana Length = 158

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 49/90 (54%), Gaps = 26/90 (28%)
Query: 1   MILDAISKLEEALM--------------------------DEAKEYFNKATLYFQQAVDE 34
           MI +AI+K EEAL+                           EAK  F+ AT +FQQAVDE
Sbjct: 61  MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120
Query: 35  EPSNELYQKSLEVAAKAPELHMEIHKHGLG 64
           +P N  Y KSLE+ AKAP+LH E +K GLG
Sbjct: 121 QPDNTHYLKSLEMTAKAPQLHAEAYKQGLG 150

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	126
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	4e-20

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 79.4 bits (195), Expect = 4e-20
 Identities = 40/92 (43%), Positives = 48/92 (52%), Gaps = 26/92 (28%)

Query: 1   MILDAISKLEEAL--------------------------MDEAKEYFNKATLYFQQAVDE 34
           MI +AI+K EEAL                            EAK  F+ AT +FQQAVDE
Sbjct: 61  MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120

Query: 35  EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQ 66
           +P N  Y KSLE+ AKAP+LH E +K GLG  
Sbjct: 121 QPDNTHYLKSLEMTAKAPQLHAEAYKQGLGGS 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	126
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.72
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.81
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.8
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.71
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.66
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	97.6
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.47
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.41
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.4
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.39
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.33
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.31
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.31
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	97.21
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.19
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.16
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.16
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.09
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.08
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.03
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.03
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.01
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	96.98
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.94
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	96.92
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	96.91
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	96.91
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	96.89
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	96.87
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	96.84
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	96.83
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	96.81
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.73
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	96.72
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.7
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.69
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	96.69
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	96.68
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.68
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.67
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	96.67
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	96.66
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	96.65
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	96.64
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	96.59
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	96.59
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	96.49
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	96.46
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	96.44
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	96.42
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	96.42
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	96.37
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	96.34
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	96.32
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	96.31
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	96.3
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	96.29
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	96.27
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.27
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	96.24
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	96.22
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	96.19
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	96.19
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	96.07
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	96.04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	96.0
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	95.96
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	95.91
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	95.89
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	95.88
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	95.88
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.86
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	95.8
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	95.78
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	95.75
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	95.75
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	95.7
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	95.7
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	95.69
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	95.68
3u4t_A	272	TPR repeat-containing protein; structural genomics	95.65
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	95.65
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	95.64
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	95.63
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	95.58
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	95.58
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	95.56
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	95.55
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.55
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	95.52
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	95.49
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	95.45
2l6j_A	111	TPR repeat-containing protein associated with HSP;	95.43
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	95.42
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	95.4
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	95.38
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.38
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	95.35
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	95.3
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	95.3
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	95.27
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	95.24
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	95.19
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	95.11
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	95.02
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	95.01
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	94.96
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	94.96
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	94.94
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	94.93
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	94.91
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	94.9
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	94.82
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	94.8
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	94.74
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	94.72
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	94.56
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	94.46
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	94.45
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	94.44
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	94.43
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	94.33
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	94.25
2kat_A	115	Uncharacterized protein; NESG, structure, structur	94.2
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	94.15
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	94.14
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	94.13
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	93.99
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	93.99
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	93.97
2gw1_A	514	Mitochondrial precursor proteins import receptor;	93.95
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	93.87
4g1t_A	472	Interferon-induced protein with tetratricopeptide	93.77
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	93.62
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	93.49
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	93.46
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	93.44
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	93.41
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	93.39
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	93.33
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	93.3
3u4t_A	272	TPR repeat-containing protein; structural genomics	93.21
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	93.06
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	92.89
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	92.85
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	92.47
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	92.41
2gw1_A	514	Mitochondrial precursor proteins import receptor;	92.15
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	92.0
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	91.97
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	91.86
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	91.15
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	91.1
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	90.96
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	90.13
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	89.48
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	89.3
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	89.03
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	88.99
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	88.89
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	88.51
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	88.49
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	88.45
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	88.43
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	88.05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	88.05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	86.76
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	86.49
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	86.46
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	86.39
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	86.09
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	85.56
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	85.41
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	85.1
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	85.07
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	84.95
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	84.92
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	84.86
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	83.96
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	83.73
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	83.57
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	83.32
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	82.77
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	82.07
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	81.22
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	81.13
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	81.06
2dl1_A	116	Spartin; SPG20, MIT, structural genomics, NPPSFA,	80.07
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	80.02

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.72  E-value=9.2e-18  Score=126.46  Aligned_cols=63  Identities=62%  Similarity=0.869  Sum_probs=58.4

Q ss_pred             ChHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchh
Q 033160            1 MILDAISKLEEALM--------------------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPEL   54 (126)
Q Consensus         1 Mi~dAisKleeAL~--------------------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPel   54 (126)
                      |+++||+.||+||.                          .+|.+.|++|.+||+|||++||+|+.|+++|+++.|||||
T Consensus        61 ~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~el  140 (158)
T 1zu2_A           61 MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQL  140 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCHhc
Confidence            46899999999999                          1356799999999999999999999999999999999999


Q ss_pred             HHHHHHhcc
Q 033160           55 HMEIHKHGL   63 (126)
Q Consensus        55 H~ei~kq~~   63 (126)
                      |.+||+|++
T Consensus       141 ~~~~~~~~~  149 (158)
T 1zu2_A          141 HAEAYKQGL  149 (158)
T ss_dssp             HHHHHHSSS
T ss_pred             cCccccccc
Confidence            999999976

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=97.81  E-value=2.1e-05  Score=53.68  Aligned_cols=59  Identities=14%  Similarity=0.250  Sum_probs=42.2

Q ss_pred             hHHHHHHHHHHHH----------H-----HHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHH
Q 033160            2 ILDAISKLEEALM----------D-----EAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSL   45 (126)
Q Consensus         2 i~dAisKleeAL~----------~-----~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsL   45 (126)
                      ++.||+.|+.|+.          .     ...+.|++|.++|++|++++|+|.                     .|+++|
T Consensus        13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al   92 (150)
T 4ga2_A           13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSV   92 (150)
T ss_dssp             HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence            4667777777766          1     223457889999999999999887                     677777


Q ss_pred             HHhhcCchhHHHHHH
Q 033160           46 EVAAKAPELHMEIHK   60 (126)
Q Consensus        46 e~a~KAPelH~ei~k   60 (126)
                      ++.-.-|+.|..+=.
T Consensus        93 ~~~p~~~~~~~~la~  107 (150)
T 4ga2_A           93 ELNPTQKDLVLKIAE  107 (150)
T ss_dssp             HHCTTCHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHH
Confidence            777677777665543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.80  E-value=3.4e-05  Score=51.63  Aligned_cols=28  Identities=25%  Similarity=0.412  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 033160           19 EYFNKATLYFQQAVDEEPSNELYQKSLE   46 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne~YkKsLe   46 (126)
                      +.|++|.++|++|+++||+|...+.+|.
T Consensus        95 ~~~~~A~~~~~~al~l~P~~~~a~~~l~  122 (126)
T 4gco_A           95 REWSKAQRAYEDALQVDPSNEEAREGVR  122 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence            3445555555555555555555444444

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.71  E-value=8.6e-05  Score=49.67  Aligned_cols=58  Identities=16%  Similarity=0.135  Sum_probs=41.1

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSL   45 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsL   45 (126)
                      .++|+.-|++||.               -..++.|++|.++|++|+++||+|.                     .|+++|
T Consensus        29 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al  108 (126)
T 4gco_A           29 YPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDAL  108 (126)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3678888888887               3345678889999999999999886                     566666


Q ss_pred             HHhhcCchhHHHHH
Q 033160           46 EVAAKAPELHMEIH   59 (126)
Q Consensus        46 e~a~KAPelH~ei~   59 (126)
                      ++.-.-++.+..|.
T Consensus       109 ~l~P~~~~a~~~l~  122 (126)
T 4gco_A          109 QVDPSNEEAREGVR  122 (126)
T ss_dssp             HHCTTCHHHHHHHH
T ss_pred             HHCcCCHHHHHHHH
Confidence            66555555555443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.66  E-value=0.00011  Score=47.01  Aligned_cols=37  Identities=16%  Similarity=0.191  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++|+.-|++||.               -...+.|++|.++|++|++++|+|.
T Consensus        21 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~   72 (126)
T 3upv_A           21 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV   72 (126)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Confidence            567778888877               2334567888888888888888876

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=97.60  E-value=0.00052  Score=49.38  Aligned_cols=62  Identities=23%  Similarity=0.287  Sum_probs=49.3

Q ss_pred             ChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcHHHH-----HHHHHhhcCchhHHHHHHhc
Q 033160            1 MILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNELYQ-----KSLEVAAKAPELHMEIHKHG   62 (126)
Q Consensus         1 Mi~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne~Yk-----KsLe~a~KAPelH~ei~kq~   62 (126)
                      |++.|+.-+.+|+.       .+|+.+|.+|.++|.+|+..+|.|+.=+     |.-+.-..|=+|+..|..+.
T Consensus        14 ~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~RAE~LK~~l~~~~   87 (117)
T 2cpt_A           14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKE   87 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            47899999999998       8999999999999999999997666322     34455677778887776554

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.47  E-value=2.6e-05  Score=52.49  Aligned_cols=22  Identities=14%  Similarity=0.160  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++.|++|.++|+++++.+|+|.
T Consensus       120 ~g~~~~A~~~~~~~l~~~p~~~  141 (184)
T 3vtx_A          120 MGEHDKAIEAYEKTISIKPGFI  141 (184)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hCCchhHHHHHHHHHHhcchhh
Confidence            4456666666666666666665

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.41  E-value=0.00042  Score=47.33  Aligned_cols=54  Identities=15%  Similarity=0.095  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLE   46 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe   46 (126)
                      ++|+.-|++|+.               -...+.|++|.++|++|+.++|+|.                     .|+++|+
T Consensus        38 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A           38 EDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            567777887776               2344568899999999999999885                     6777777


Q ss_pred             HhhcCchhHH
Q 033160           47 VAAKAPELHM   56 (126)
Q Consensus        47 ~a~KAPelH~   56 (126)
                      +.-..|+.+.
T Consensus       118 ~~p~~~~~~~  127 (148)
T 2vgx_A          118 LIANXPEFXE  127 (148)
T ss_dssp             HHTTCGGGHH
T ss_pred             HCcCCCcchH
Confidence            7766676653

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.40  E-value=0.00052  Score=45.48  Aligned_cols=37  Identities=11%  Similarity=0.082  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++|+.-|++|+.               -...+.|++|..+|++|++++|+|.
T Consensus        35 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~   86 (142)
T 2xcb_A           35 DDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP   86 (142)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            567777777776               2344567888888888888888875

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.39  E-value=0.00031  Score=52.57  Aligned_cols=38  Identities=18%  Similarity=0.287  Sum_probs=32.3

Q ss_pred             hHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            2 ILDAISKLEEALM-------------------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         2 i~dAisKleeAL~-------------------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .++|+..++.|+.                         .+|++.+++|..+|++|+++||++.
T Consensus        18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~   80 (158)
T 1zu2_A           18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD   80 (158)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH
Confidence            4677888888877                         4577889999999999999999996

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.33  E-value=0.00088  Score=47.66  Aligned_cols=57  Identities=16%  Similarity=0.229  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHH---------------HHHH-----------HHHHHHHHHHHHHHhcCCCcH-----------------
Q 033160            3 LDAISKLEEALM---------------DEAK-----------EYFNKATLYFQQAVDEEPSNE-----------------   39 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~-----------~~f~kA~~~FqkAvd~dP~Ne-----------------   39 (126)
                      ++|+.-|+.||.               -...           +.|++|..+|++|++++|+|.                 
T Consensus        56 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~  135 (217)
T 2pl2_A           56 NPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERD  135 (217)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChH
Confidence            567777777776               2334           889999999999999999986                 


Q ss_pred             ----HHHHHHHHhhcCchhHHHHHH
Q 033160           40 ----LYQKSLEVAAKAPELHMEIHK   60 (126)
Q Consensus        40 ----~YkKsLe~a~KAPelH~ei~k   60 (126)
                          .|+++|++. ..|+.|..+=.
T Consensus       136 ~A~~~~~~al~~~-~~~~~~~~la~  159 (217)
T 2pl2_A          136 KAEASLKQALALE-DTPEIRSALAE  159 (217)
T ss_dssp             HHHHHHHHHHHHC-CCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc-cchHHHHHHHH
Confidence                677778887 77777766544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.31  E-value=0.00036  Score=46.35  Aligned_cols=29  Identities=21%  Similarity=0.327  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 033160           16 EAKEYFNKATLYFQQAVDEEPSNELYQKS   44 (126)
Q Consensus        16 ~A~~~f~kA~~~FqkAvd~dP~Ne~YkKs   44 (126)
                      .+++.|++|.++|++||+++|+++..++-
T Consensus        94 ~~~~~~~~A~~~~~kal~~~~~~~~~~~l  122 (127)
T 4gcn_A           94 QKQNDLSLAVQWFHRSLSEFRDPELVKKV  122 (127)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhhCcCHHHHHHH
Confidence            45567899999999999999998877654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.31  E-value=0.00063  Score=45.63  Aligned_cols=51  Identities=24%  Similarity=0.211  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLE   46 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe   46 (126)
                      ++|+.-|++||.               -...+.|++|.++|++|++++|+|.                     .|+++|+
T Consensus        28 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           28 SKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIE  107 (164)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            567777777776               2334557788888888888888765                     6666777


Q ss_pred             HhhcCch
Q 033160           47 VAAKAPE   53 (126)
Q Consensus        47 ~a~KAPe   53 (126)
                      +.-..++
T Consensus       108 ~~p~~~~  114 (164)
T 3sz7_A          108 AEGNGGS  114 (164)
T ss_dssp             HHSSSCC
T ss_pred             hCCCchH
Confidence            7766666

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=97.21  E-value=0.0013  Score=45.28  Aligned_cols=62  Identities=11%  Similarity=0.089  Sum_probs=50.0

Q ss_pred             ChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcHH----HHHHHHHhhcCchhHHHHHHhc
Q 033160            1 MILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNEL----YQKSLEVAAKAPELHMEIHKHG   62 (126)
Q Consensus         1 Mi~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne~----YkKsLe~a~KAPelH~ei~kq~   62 (126)
                      |++.|+.-+..|+.       .+|..+|.+|.++|.+|+..+|+.+.    -.|.-+.-..|=+|+..|....
T Consensus        11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~LK~~l~~~~   83 (93)
T 1wfd_A           11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENIKKYLDQEK   83 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            68999999999998       89999999999999999999997664    1134466677777777776543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=97.19  E-value=0.00091  Score=45.41  Aligned_cols=38  Identities=18%  Similarity=0.155  Sum_probs=32.7

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .++|+.-|++||.               -...+.|++|..+|++|++++|+|.
T Consensus        47 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   99 (150)
T 4ga2_A           47 YDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQK   99 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCH
Confidence            3678888999988               4556779999999999999999987

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.16  E-value=0.00065  Score=51.67  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHhcCCCcHH
Q 033160           19 EYFNKATLYFQQAVDEEPSNEL   40 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne~   40 (126)
                      ..|++|.+||++|++++|+|..
T Consensus       152 ~~y~~A~~~~~kal~~~p~~~~  173 (472)
T 4g1t_A          152 NQNERAKVCFEKALEKKPKNPE  173 (472)
T ss_dssp             THHHHHHHHHHHHHHHSTTCHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHH
Confidence            4689999999999999999873

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.16  E-value=0.00079  Score=44.67  Aligned_cols=25  Identities=28%  Similarity=0.569  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcHHH
Q 033160           17 AKEYFNKATLYFQQAVDEEPSNELY   41 (126)
Q Consensus        17 A~~~f~kA~~~FqkAvd~dP~Ne~Y   41 (126)
                      ....|++|.+||++|++++|+|-.+
T Consensus        20 ~~~~~~~A~~~y~~Al~~~p~~~~~   44 (127)
T 4gcn_A           20 KQKDFEKAHVHYDKAIELDPSNITF   44 (127)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            3456899999999999999999733

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.09  E-value=0.002  Score=40.81  Aligned_cols=38  Identities=11%  Similarity=-0.009  Sum_probs=28.9

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .++|+.-|++||.               -...+.|++|..+|++|++.+|+|.
T Consensus        25 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~   77 (137)
T 3q49_B           25 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV   77 (137)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH
Confidence            3577788888877               2234567889999999999999886

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.08  E-value=0.0017  Score=38.99  Aligned_cols=37  Identities=27%  Similarity=0.145  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++|+.-|++++.               -...+.|++|.++|+++++.+|+|.
T Consensus        21 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~   72 (118)
T 1elw_A           21 DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG   72 (118)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH
Confidence            456666666655               2234456777777777777777665

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.03  E-value=0.00047  Score=43.64  Aligned_cols=37  Identities=24%  Similarity=0.306  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++|+..|++||.               -...+.|++|..+|++|++.+|++.
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~   53 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS   53 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH
Confidence            578888888887               3345568999999999999999986

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.03  E-value=0.00087  Score=44.85  Aligned_cols=31  Identities=10%  Similarity=0.218  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHH
Q 033160           17 AKEYFNKATLYFQQAVDEEPSNE-LYQKSLEV   47 (126)
Q Consensus        17 A~~~f~kA~~~FqkAvd~dP~Ne-~YkKsLe~   47 (126)
                      .++.|++|..+|++|++++|+|. ..++.|..
T Consensus       109 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~  140 (162)
T 3rkv_A          109 AAWKLDEAEEDLKLLLRNHPAAASVVAREMKI  140 (162)
T ss_dssp             HTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            34556666667777777777666 55555543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.01  E-value=0.00047  Score=46.24  Aligned_cols=48  Identities=15%  Similarity=0.147  Sum_probs=39.3

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHH--HHHHHHHhh
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNEL--YQKSLEVAA   49 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~--YkKsLe~a~   49 (126)
                      .++|+.-|++||.               -..++.|++|.++|++|++++|+|..  |++.|..+.
T Consensus        61 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  125 (164)
T 3sz7_A           61 HEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK  125 (164)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            4678888888887               34556789999999999999999986  788876654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.98  E-value=0.0022  Score=40.50  Aligned_cols=26  Identities=35%  Similarity=0.609  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160           20 YFNKATLYFQQAVDEEPSNELYQKSL   45 (126)
Q Consensus        20 ~f~kA~~~FqkAvd~dP~Ne~YkKsL   45 (126)
                      .|++|.++|+++++++|+|......|
T Consensus       114 ~~~~A~~~~~~al~~~p~~~~~~~~l  139 (148)
T 2dba_A          114 RLDQAVLDLQRCVSLEPKNKVFQEAL  139 (148)
T ss_dssp             CHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence            34444455555555555444444433

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.94  E-value=0.0021  Score=37.94  Aligned_cols=24  Identities=25%  Similarity=0.541  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHhcCCCcHHHHH
Q 033160           20 YFNKATLYFQQAVDEEPSNELYQK   43 (126)
Q Consensus        20 ~f~kA~~~FqkAvd~dP~Ne~YkK   43 (126)
                      .|++|.++|++|++.+|+|.....
T Consensus        58 ~~~~A~~~~~~a~~~~p~~~~~~~   81 (91)
T 1na3_A           58 DYDEAIEYYQKALELDPNNAEAKQ   81 (91)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHHHHHHHhcCCCCHHHHH
Confidence            345555555555555555544333

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=96.92  E-value=0.00074  Score=45.26  Aligned_cols=25  Identities=28%  Similarity=0.537  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcHHHH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNELYQ   42 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne~Yk   42 (126)
                      .+.|++|.++|++|+++||+|..|+
T Consensus       154 ~g~~~~A~~~~~~al~~~p~~a~~~  178 (184)
T 3vtx_A          154 KGLRDEAVKYFKKALEKEEKKAKYE  178 (184)
T ss_dssp             TTCHHHHHHHHHHHHHTTHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHhCCccCHHHH
Confidence            3445666666666666666655543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=96.91  E-value=0.0024  Score=38.33  Aligned_cols=47  Identities=15%  Similarity=0.142  Sum_probs=37.2

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA   48 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a   48 (126)
                      .++|+.-+++++.               -...+.|++|.++|+++++.+|+|......|...
T Consensus        54 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           54 YQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            3577888888877               3344568999999999999999999877777544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=96.91  E-value=0.0013  Score=41.95  Aligned_cols=48  Identities=17%  Similarity=0.124  Sum_probs=39.7

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcC------CCcHHHHHHHHHhh
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEE------PSNELYQKSLEVAA   49 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~d------P~Ne~YkKsLe~a~   49 (126)
                      .++|+.-+++||.               -..++.|++|.++|++|++++      |+|...+..|..+.
T Consensus        54 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           54 FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence            3678888888887               345567899999999999999      99998888887654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=96.89  E-value=0.0019  Score=42.63  Aligned_cols=44  Identities=16%  Similarity=0.138  Sum_probs=31.9

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL   45 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL   45 (126)
                      .++|+.-|++||.               -...+.+++|..+|++|++++|+|....-.|
T Consensus        33 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~l   91 (121)
T 1hxi_A           33 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL   91 (121)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3577888888877               3334567888888888888888887555444

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=96.87  E-value=0.0017  Score=40.16  Aligned_cols=37  Identities=19%  Similarity=0.125  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++|+.-|++|+.               -...+.|++|.++|++|++.+|++.
T Consensus        33 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~   84 (133)
T 2lni_A           33 PQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI   84 (133)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch
Confidence            456666776665               1123456777778888888777765

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=96.84  E-value=0.0034  Score=38.15  Aligned_cols=37  Identities=14%  Similarity=0.084  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++|+.-|++++.               -...+.|++|.++|+++++.+|++.
T Consensus        29 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~   80 (131)
T 2vyi_A           29 EAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS   80 (131)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH
Confidence            456666666665               1223456777777777777777765

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=96.83  E-value=0.0054  Score=43.26  Aligned_cols=20  Identities=25%  Similarity=0.669  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHhcCCCcH
Q 033160           20 YFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        20 ~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .|++|..+|++|++++|+|.
T Consensus        69 ~~~~A~~~~~~al~~~p~~~   88 (208)
T 3urz_A           69 NYDKAYLFYKELLQKAPNNV   88 (208)
T ss_dssp             CHHHHHHHHHHHHHHCTTCH
T ss_pred             CHHHHHHHHHHHHHHCCCCH
Confidence            35677777777777777765

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=96.81  E-value=0.0038  Score=40.15  Aligned_cols=20  Identities=10%  Similarity=-0.006  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHhcCCCcH
Q 033160           20 YFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        20 ~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .|++|.++|++|++.+|+|.
T Consensus        62 ~~~~A~~~~~~a~~~~~~~~   81 (166)
T 1a17_A           62 CYGYALGDATRAIELDKKYI   81 (166)
T ss_dssp             CHHHHHHHHHHHHHHCTTCH
T ss_pred             CHHHHHHHHHHHHHhCcccH
Confidence            34555555555555555543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.73  E-value=0.00094  Score=42.82  Aligned_cols=22  Identities=18%  Similarity=0.291  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .+.|++|.++|++|++.+|+|.
T Consensus        40 ~~~~~~A~~~~~~al~~~p~~~   61 (117)
T 3k9i_A           40 LGEYRKAEAVLANGVKQFPNHQ   61 (117)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cCCHHHHHHHHHHHHHhCCCch
Confidence            4557778888888888888776

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=96.72  E-value=0.002  Score=45.35  Aligned_cols=37  Identities=16%  Similarity=0.064  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++|+.-|+.|+.               -...+.|++|.+||++|+.++|+|.
T Consensus        53 ~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~  104 (151)
T 3gyz_A           53 EEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY  104 (151)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence            456666666665               2334556677777777777777665

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.70  E-value=0.0027  Score=40.60  Aligned_cols=39  Identities=10%  Similarity=0.077  Sum_probs=32.6

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNEL   40 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~   40 (126)
                      .++|+.-|++||.               -...+.|++|.++|++|++.+|+|..
T Consensus        43 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~   96 (117)
T 3k9i_A           43 YRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET   96 (117)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence            3678888888887               34566789999999999999999874

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.69  E-value=0.0015  Score=41.47  Aligned_cols=45  Identities=20%  Similarity=0.276  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHHHhhcCchhHH
Q 033160           12 ALMDEAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLEVAAKAPELHM   56 (126)
Q Consensus        12 AL~~~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe~a~KAPelH~   56 (126)
                      |..-...+.|++|.++|++|++.+|+|.                     .|+++|+++.+.++.|.
T Consensus        14 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~   79 (100)
T 3ma5_A           14 AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKD   79 (100)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhH
Confidence            3334455678999999999999999886                     67777777766666664

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.69  E-value=0.0039  Score=39.32  Aligned_cols=21  Identities=19%  Similarity=0.322  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCcH
Q 033160           19 EYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      +.|++|.++|+++++.+|+|.
T Consensus        79 ~~~~~A~~~~~~~~~~~~~~~   99 (148)
T 2dba_A           79 EDYDKAETEASKAIEKDGGDV   99 (148)
T ss_dssp             TCHHHHHHHHHHHHHHTSCCH
T ss_pred             ccHHHHHHHHHHHHhhCccCH
Confidence            457788888888888888775

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=96.68  E-value=0.01  Score=39.52  Aligned_cols=41  Identities=17%  Similarity=0.092  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHHHhhcCc-hhHHHH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLEVAAKAP-ELHMEI   58 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe~a~KAP-elH~ei   58 (126)
                      ++.|++|..+|++|++++|+|.                     .|+++|++.-..+ .++.+|
T Consensus        76 ~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l  138 (162)
T 3rkv_A           76 IGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM  138 (162)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            4458999999999999999997                     6777777765544 444443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.68  E-value=0.004  Score=37.87  Aligned_cols=36  Identities=11%  Similarity=0.078  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCc
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSN   38 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~N   38 (126)
                      ++|+.-+++||.               -...+.|++|.++|++|++++|+|
T Consensus        21 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A           21 REAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            456666666666               222344677777777777777776

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.67  E-value=0.0045  Score=37.72  Aligned_cols=38  Identities=26%  Similarity=0.296  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHhcCCCcHH
Q 033160            3 LDAISKLEEALM----------------DEAKEYFNKATLYFQQAVDEEPSNEL   40 (126)
Q Consensus         3 ~dAisKleeAL~----------------~~A~~~f~kA~~~FqkAvd~dP~Ne~   40 (126)
                      ++|+.-|++|+.                -...+.|++|.++|++|++++|+|..
T Consensus        17 ~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~   70 (99)
T 2kc7_A           17 ENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA   70 (99)
T ss_dssp             HHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence            456666666665                12344577888888888888888764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=96.67  E-value=0.0038  Score=43.91  Aligned_cols=43  Identities=14%  Similarity=0.128  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHHHhhcCchhHHHH
Q 033160           16 EAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLEVAAKAPELHMEI   58 (126)
Q Consensus        16 ~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe~a~KAPelH~ei   58 (126)
                      ...+.|++|..+|++|++.+|+|.                     .|++++++.-..|+.|..+
T Consensus        47 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l  110 (151)
T 3gyz_A           47 YNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT  110 (151)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence            345568999999999999999998                     5556666655556555443

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=96.66  E-value=0.0027  Score=42.82  Aligned_cols=39  Identities=21%  Similarity=0.115  Sum_probs=35.3

Q ss_pred             ChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            1 MILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         1 Mi~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      |++.||.-+.+|..       .+|..+|.+|.++|.+++..+||..
T Consensus         7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~   52 (83)
T 2v6y_A            7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESV   52 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence            47899999999998       9999999999999999999998655

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=96.65  E-value=0.0078  Score=40.07  Aligned_cols=59  Identities=17%  Similarity=0.259  Sum_probs=44.7

Q ss_pred             ChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH-----HHhhcCchhHHHHHH
Q 033160            1 MILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL-----EVAAKAPELHMEIHK   60 (126)
Q Consensus         1 Mi~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL-----e~a~KAPelH~ei~k   60 (126)
                      |++.|+.-+.+|+.       .+|..+|.+|.++|.+++..+|+.. -|..|     +.-..|=+|...|.+
T Consensus         9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~-~k~~l~~k~~eYl~RAE~Lk~~l~~   79 (85)
T 2v6x_A            9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPK-SKDLIRAKFTEYLNRAEQLKKHLES   79 (85)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            47899999999998       8999999999999999999997544 33333     444566666655543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=96.64  E-value=0.0024  Score=56.13  Aligned_cols=37  Identities=16%  Similarity=0.218  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++|+.-|++||.               -..++.|++|.++|+||++++|+|.
T Consensus        60 ~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~  111 (723)
T 4gyw_A           60 QEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFA  111 (723)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            456666666665               2233446666666777777776664

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=96.59  E-value=0.0029  Score=55.64  Aligned_cols=57  Identities=16%  Similarity=0.334  Sum_probs=47.0

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSL   45 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsL   45 (126)
                      .++|+.-+++||.               -..++.|++|.++|++|++++|+|.                     .|+++|
T Consensus        25 ~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl  104 (723)
T 4gyw_A           25 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAI  104 (723)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4789999999998               3345678999999999999999986                     788888


Q ss_pred             HHhhcCchhHHHH
Q 033160           46 EVAAKAPELHMEI   58 (126)
Q Consensus        46 e~a~KAPelH~ei   58 (126)
                      ++.-.-++.|..+
T Consensus       105 ~l~P~~~~a~~~L  117 (723)
T 4gyw_A          105 QINPAFADAHSNL  117 (723)
T ss_dssp             HHCTTCHHHHHHH
T ss_pred             HhCCCCHHHHHHH
Confidence            8877777777654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=96.59  E-value=0.0048  Score=42.47  Aligned_cols=46  Identities=20%  Similarity=0.205  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA   48 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a   48 (126)
                      ++|+.-++.||.               -..++.|++|.++|++|++++|+|...+..|..+
T Consensus       105 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  165 (198)
T 2fbn_A          105 PKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC  165 (198)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence            456666666666               3344557788888888888888887666666544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=96.49  E-value=0.0072  Score=39.85  Aligned_cols=32  Identities=9%  Similarity=0.006  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Q 033160            9 LEEALMDEAKEYFNKATLYFQQAVDEEPSNEL   40 (126)
Q Consensus         9 leeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne~   40 (126)
                      +..|..-...+.|++|..+|++|+..+|+|..
T Consensus        22 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~   53 (142)
T 2xcb_A           22 YALGFNQYQAGKWDDAQKIFQALCMLDHYDAR   53 (142)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHHhCCccHH
Confidence            34444445566789999999999999999983

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=96.46  E-value=0.0062  Score=36.29  Aligned_cols=44  Identities=14%  Similarity=0.106  Sum_probs=32.0

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCC--cHHHHHHH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPS--NELYQKSL   45 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~--Ne~YkKsL   45 (126)
                      .++|+.-|+.|+.               -...+.|++|.++|++|++.+|+  +......|
T Consensus        22 ~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l   82 (112)
T 2kck_A           22 YTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK   82 (112)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence            3567777887776               22345588999999999999998  76555555

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=96.44  E-value=0.0097  Score=35.80  Aligned_cols=37  Identities=27%  Similarity=0.417  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++|+.-|++++.               -...+.|++|..+|+++++.+|++.
T Consensus        26 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~   77 (125)
T 1na0_A           26 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA   77 (125)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH
Confidence            456666666665               1223457777777888877777765

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=96.42  E-value=0.0056  Score=43.17  Aligned_cols=44  Identities=16%  Similarity=0.030  Sum_probs=35.6

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL   45 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL   45 (126)
                      .++|+.-|++||.               -...+.|++|.++|++|++++|+|..-.-+|
T Consensus        70 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l  128 (208)
T 3urz_A           70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFL  128 (208)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            4678888888887               3456679999999999999999998555444

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=96.42  E-value=0.0076  Score=41.00  Aligned_cols=21  Identities=19%  Similarity=0.290  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHhcCCCcH
Q 033160           19 EYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      +.|++|..+|++|++.+|++.
T Consensus       187 ~~~~~A~~~~~~al~~~~~~~  207 (258)
T 3uq3_A          187 MSFPEAIADCNKAIEKDPNFV  207 (258)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCHHHHHHHHHHHHHhCHHHH
Confidence            345555556666666655554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=96.37  E-value=0.0052  Score=37.87  Aligned_cols=45  Identities=24%  Similarity=0.233  Sum_probs=34.8

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLE   46 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe   46 (126)
                      .++|+.-|++|+.               -...+.|++|.++|+++++.+|+|......|.
T Consensus        66 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  125 (133)
T 2lni_A           66 FQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQ  125 (133)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            3678888888887               33445689999999999999999876555553

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=96.34  E-value=0.0068  Score=43.01  Aligned_cols=30  Identities=17%  Similarity=0.368  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNELYQKSLEV   47 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~   47 (126)
                      .+.|++|.++|++|++.+|+|...+..|..
T Consensus       319 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~  348 (359)
T 3ieg_A          319 EEMYDEAIQDYEAAQEHNENDQQIREGLEK  348 (359)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            344566666666666666666655555543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=96.32  E-value=0.0098  Score=40.40  Aligned_cols=29  Identities=14%  Similarity=0.101  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160           11 EALMDEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        11 eAL~~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .|..-...+.|++|..+|++|++.+|+|.
T Consensus        27 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~   55 (148)
T 2vgx_A           27 LAFNQYQSGXYEDAHXVFQALCVLDHYDS   55 (148)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCcccH
Confidence            33334455678999999999999999997

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=96.31  E-value=0.0092  Score=41.35  Aligned_cols=36  Identities=22%  Similarity=0.252  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160           13 LMDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA   48 (126)
Q Consensus        13 L~~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a   48 (126)
                      +..++.+.|++|.++|++|++++|+|...+..|...
T Consensus       188 ~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i  223 (228)
T 4i17_A          188 EKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV  223 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence            336788899999999999999999999888777544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=96.30  E-value=0.0082  Score=41.56  Aligned_cols=20  Identities=20%  Similarity=0.403  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHhcCCCcH
Q 033160           20 YFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        20 ~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .|++|.++|++|++.+|+|.
T Consensus        92 ~~~~A~~~~~~al~~~~~~~  111 (275)
T 1xnf_A           92 NFDAAYEAFDSVLELDPTYN  111 (275)
T ss_dssp             CHHHHHHHHHHHHHHCTTCT
T ss_pred             CHHHHHHHHHHHHhcCcccc
Confidence            34445555555555555444

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=96.29  E-value=0.0099  Score=36.05  Aligned_cols=45  Identities=24%  Similarity=0.456  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV   47 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~   47 (126)
                      ++|+.-+++++.               -...+.|++|..+|++|++.+|+|......|-.
T Consensus        63 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  122 (131)
T 2vyi_A           63 AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI  122 (131)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence            567777777776               344557899999999999999999876665543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=96.27  E-value=0.0063  Score=40.04  Aligned_cols=31  Identities=29%  Similarity=0.400  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            9 LEEALMDEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         9 leeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++.+..-...+.|++|..+|++|+..+|+|.
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~   51 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQKEPERE   51 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Confidence            4455555566789999999999999999987

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.27  E-value=0.014  Score=34.30  Aligned_cols=29  Identities=21%  Similarity=0.343  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Q 033160           12 ALMDEAKEYFNKATLYFQQAVDEEPSNEL   40 (126)
Q Consensus        12 AL~~~A~~~f~kA~~~FqkAvd~dP~Ne~   40 (126)
                      |..-...+.|++|..+|++|++.+|+|..
T Consensus        16 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~   44 (91)
T 1na3_A           16 GNAYYKQGDYDEAIEYYQKALELDPNNAE   44 (91)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence            33344567799999999999999999873

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=96.24  E-value=0.0072  Score=41.03  Aligned_cols=38  Identities=21%  Similarity=0.031  Sum_probs=34.6

Q ss_pred             hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            2 ILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         2 i~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      +++||+-+.+|..       .+|..+|.+|.++|.+|+..+||..
T Consensus        16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~~   60 (83)
T 2w2u_A           16 EEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGS   60 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTSS
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence            6889999999998       9999999999999999999988654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=96.22  E-value=0.0093  Score=44.46  Aligned_cols=24  Identities=25%  Similarity=0.266  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcH
Q 033160           16 EAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        16 ~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      +|+..|++|.+.|.++++++|++-
T Consensus        75 eAl~~~~kAL~l~n~~~e~~pd~~   98 (159)
T 2hr2_A           75 EALHSADKALHYFNRRGELNQDEG   98 (159)
T ss_dssp             HHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred             HHHHHHHHHHHhhhccccCCCchH
Confidence            444444444444444444499884

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=96.19  E-value=0.0099  Score=38.14  Aligned_cols=45  Identities=16%  Similarity=0.124  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV   47 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~   47 (126)
                      ++|+.-+++|+.               -...+.|++|.++|++|++.+|+|......+.+
T Consensus        64 ~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~  123 (166)
T 1a17_A           64 GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE  123 (166)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            567777777776               344567899999999999999999855544433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=96.19  E-value=0.0068  Score=40.54  Aligned_cols=20  Identities=15%  Similarity=0.245  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHhcCCCcH
Q 033160           20 YFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        20 ~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .|++|..+|++|++.+|+|.
T Consensus       130 ~~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A          130 NYAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             CHHHHHHHHHHHHHTCCTTS
T ss_pred             cHHHHHHHHHHHHhhCCCCc
Confidence            34555555555555555543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=96.07  E-value=0.015  Score=34.89  Aligned_cols=47  Identities=26%  Similarity=0.340  Sum_probs=35.4

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA   48 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a   48 (126)
                      .++|+.-|++++.               -...+.|++|..+|+++++.+|++...+..|-.+
T Consensus        59 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  120 (125)
T 1na0_A           59 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA  120 (125)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            3567777777776               2234468999999999999999998777766443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=96.04  E-value=0.0064  Score=48.88  Aligned_cols=21  Identities=5%  Similarity=0.129  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCcH
Q 033160           19 EYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      +.|++|..||++|+++||+|-
T Consensus       180 g~~~eAl~~~~kal~ldP~~~  200 (382)
T 2h6f_A          180 RDPSQELEFIADILNQDAKNY  200 (382)
T ss_dssp             TCCTTHHHHHHHHHHHCTTCH
T ss_pred             cCHHHHHHHHHHHHHhCccCH
Confidence            334555555555555555553

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=96.00  E-value=0.012  Score=41.65  Aligned_cols=22  Identities=23%  Similarity=0.178  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .+.|++|.++|+++++.+|+|.
T Consensus       285 ~~~~~~A~~~~~~~~~~~~~~~  306 (359)
T 3ieg_A          285 DEKPVEAIRICSEVLQMEPDNV  306 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCH
T ss_pred             ccCHHHHHHHHHHHHHhCcccH
Confidence            4457888888888888888776

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=95.96  E-value=0.019  Score=39.49  Aligned_cols=43  Identities=9%  Similarity=0.053  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHHHhhcCchhHHHHHH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLEVAAKAPELHMEIHK   60 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe~a~KAPelH~ei~k   60 (126)
                      .+.|++|..+|++|++.+|+|.                     .|+++|++.-..++++..+.+
T Consensus       101 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  164 (198)
T 2fbn_A          101 NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL  164 (198)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence            3458999999999999999986                     567777776666666655544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=95.91  E-value=0.013  Score=46.41  Aligned_cols=21  Identities=24%  Similarity=0.268  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCcH
Q 033160           19 EYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      +.|++|.++|++|++++|+|.
T Consensus       287 g~~~~A~~~~~~al~~~p~~~  307 (370)
T 1ihg_A          287 SDWQGAVDSCLEALEIDPSNT  307 (370)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCH
T ss_pred             cCHHHHHHHHHHHHHhCchhH
Confidence            446778888888888888775

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=95.89  E-value=0.011  Score=46.94  Aligned_cols=54  Identities=17%  Similarity=0.143  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchhHH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHM   56 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPelH~   56 (126)
                      ++|+.-+++||.               -..++.|++|.++|++|++++|+|...+..|..+.+.=+-..
T Consensus       290 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~  358 (370)
T 1ihg_A          290 QGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK  358 (370)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            577888888887               344556899999999999999999988888876644333333

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=95.88  E-value=0.024  Score=34.38  Aligned_cols=31  Identities=13%  Similarity=0.095  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            9 LEEALMDEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         9 leeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++.|..-...+.|++|.++|++|++.+|+|.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~   34 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGK   34 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence            4555555667789999999999999999985

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=95.88  E-value=0.013  Score=47.02  Aligned_cols=58  Identities=16%  Similarity=0.160  Sum_probs=45.2

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHH-HHHHHHHHHHHHhcCCCcH---------------------HHHHH
Q 033160            2 ILDAISKLEEALM---------------DEAKEY-FNKATLYFQQAVDEEPSNE---------------------LYQKS   44 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~-f~kA~~~FqkAvd~dP~Ne---------------------~YkKs   44 (126)
                      .++|+.-++.||.               -..++. |++|..+|++|+.++|+|-                     .|+++
T Consensus       113 ~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~ka  192 (382)
T 2h6f_A          113 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADI  192 (382)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            4678888888888               222343 9999999999999999986                     78888


Q ss_pred             HHHhhcCchhHHHHH
Q 033160           45 LEVAAKAPELHMEIH   59 (126)
Q Consensus        45 Le~a~KAPelH~ei~   59 (126)
                      |++.-+-++.|..+.
T Consensus       193 l~ldP~~~~a~~~lg  207 (382)
T 2h6f_A          193 LNQDAKNYHAWQHRQ  207 (382)
T ss_dssp             HHHCTTCHHHHHHHH
T ss_pred             HHhCccCHHHHHHHH
Confidence            888777777665443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.86  E-value=0.017  Score=37.57  Aligned_cols=31  Identities=16%  Similarity=0.233  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCcHHHHHHHHHhh
Q 033160           19 EYFNKATLYFQQAVDEEPSNELYQKSLEVAA   49 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~   49 (126)
                      +.|++|..+|++|++.+|+|.....++..-.
T Consensus        60 g~~~~A~~~~~~al~l~P~~~~~~~n~~~~~   90 (104)
T 2v5f_A           60 GDLDKALLLTKKLLELDPEHQRANGNLKYFE   90 (104)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHhhHHHHH
Confidence            4589999999999999999998888876443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=95.80  E-value=0.013  Score=45.07  Aligned_cols=46  Identities=28%  Similarity=0.277  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA   48 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a   48 (126)
                      ++|+.-++.||.               -..++.|++|..+|++|++++|+|......|..+
T Consensus       213 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~  273 (336)
T 1p5q_A          213 SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC  273 (336)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            567777777777               3344568999999999999999998766666443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=95.78  E-value=0.021  Score=39.47  Aligned_cols=24  Identities=8%  Similarity=-0.003  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcHHH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNELY   41 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne~Y   41 (126)
                      .+.|++|.++|++|++.+|+|..+
T Consensus       124 ~g~~~~A~~~~~~a~~~~~~~~~~  147 (275)
T 1xnf_A          124 GGRDKLAQDDLLAFYQDDPNDPFR  147 (275)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCChHH
Confidence            345777788888888888877743

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=95.75  E-value=0.015  Score=49.42  Aligned_cols=58  Identities=17%  Similarity=0.236  Sum_probs=42.0

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH--------------------HHHHHHH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE--------------------LYQKSLE   46 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne--------------------~YkKsLe   46 (126)
                      .++|+.-|++||.               -...+.|++|.++|++|++++|+|.                    .|+++|+
T Consensus       449 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~~~~~~~al~  528 (681)
T 2pzi_A          449 VAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDEHKFYQTVWS  528 (681)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            3678888888887               3344568999999999999999885                    4666666


Q ss_pred             HhhcCchhHHHHH
Q 033160           47 VAAKAPELHMEIH   59 (126)
Q Consensus        47 ~a~KAPelH~ei~   59 (126)
                      +.-..++.|..+=
T Consensus       529 ~~P~~~~a~~~lg  541 (681)
T 2pzi_A          529 TNDGVISAAFGLA  541 (681)
T ss_dssp             HCTTCHHHHHHHH
T ss_pred             hCCchHHHHHHHH
Confidence            6656666665443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=95.75  E-value=0.018  Score=44.35  Aligned_cols=42  Identities=19%  Similarity=0.263  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHHHhhcCchhHHHHH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLEVAAKAPELHMEIH   59 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe~a~KAPelH~ei~   59 (126)
                      ++.|++|.++|++|++++|+|.                     .|+++|++.-.-++.+..+-
T Consensus       209 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~  271 (336)
T 1p5q_A          209 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA  271 (336)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            3458999999999999999986                     56777777666666655543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=95.70  E-value=0.032  Score=44.89  Aligned_cols=18  Identities=17%  Similarity=0.099  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHhcCC
Q 033160           19 EYFNKATLYFQQAVDEEP   36 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP   36 (126)
                      +.|++|.++|++|++++|
T Consensus       235 g~~~~A~~~~~~al~~~p  252 (474)
T 4abn_A          235 KISQQALSAYAQAEKVDR  252 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCG
T ss_pred             chHHHHHHHHHHHHHhCC
Confidence            668888888888888888

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=95.70  E-value=0.02  Score=46.74  Aligned_cols=56  Identities=16%  Similarity=0.134  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLE   46 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe   46 (126)
                      ++|+.-+++||.               -...+.|++|.++|++|++++|+|.                     .|+++|+
T Consensus        23 ~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~  102 (477)
T 1wao_1           23 ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVK  102 (477)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            567777777777               2234557788888888888888775                     5566666


Q ss_pred             HhhcCchhHHHH
Q 033160           47 VAAKAPELHMEI   58 (126)
Q Consensus        47 ~a~KAPelH~ei   58 (126)
                      +.-..++.+..+
T Consensus       103 ~~p~~~~~~~~l  114 (477)
T 1wao_1          103 VKPHDKDAKMKY  114 (477)
T ss_dssp             HSTTCTTHHHHH
T ss_pred             hCCCCHHHHHHH
Confidence            655555555443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=95.69  E-value=0.013  Score=41.58  Aligned_cols=38  Identities=21%  Similarity=0.066  Sum_probs=29.0

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .++|+.-|++||.               -.....+++|..+|++|++.+|+|.
T Consensus        21 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~   73 (217)
T 2pl2_A           21 YDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL   73 (217)
T ss_dssp             HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence            3577778888777               2334568899999999999999885

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=95.68  E-value=0.01  Score=47.88  Aligned_cols=37  Identities=19%  Similarity=0.246  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++|+.-+++||.               -...+.|++|.++|++|++.+|+|.
T Consensus        40 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~   91 (568)
T 2vsy_A           40 TAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHP   91 (568)
T ss_dssp             HHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence            456666666665               2334457788888888888888776

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=95.65  E-value=0.0083  Score=41.77  Aligned_cols=31  Identities=16%  Similarity=0.177  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 033160           17 AKEYFNKATLYFQQAVDEEPSNELYQKSLEV   47 (126)
Q Consensus        17 A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~   47 (126)
                      .++.|++|.++|++|++++|+|+.-++.|..
T Consensus       233 ~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~  263 (272)
T 3u4t_A          233 INRDKVKADAAWKNILALDPTNKKAIDGLKM  263 (272)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-
T ss_pred             HcCCHHHHHHHHHHHHhcCccHHHHHHHhhh
Confidence            3466899999999999999999988877743

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=95.65  E-value=0.0054  Score=38.76  Aligned_cols=48  Identities=19%  Similarity=0.181  Sum_probs=36.2

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCC-----cHHHHHHHHHhh
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPS-----NELYQKSLEVAA   49 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~-----Ne~YkKsLe~a~   49 (126)
                      .++|+.-|++||.               -...+.|++|.++|++|++.+|+     ++.....|..+.
T Consensus        59 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~  126 (137)
T 3q49_B           59 PEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK  126 (137)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence            3578888888887               34556789999999999999998     565555555443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=95.64  E-value=0.039  Score=34.34  Aligned_cols=20  Identities=25%  Similarity=0.403  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHhcCCCc
Q 033160           19 EYFNKATLYFQQAVDEEPSN   38 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~N   38 (126)
                      +.|++|.++|+++++.+|++
T Consensus        53 ~~~~~A~~~~~~~~~~~p~~   72 (129)
T 2xev_A           53 RNFQLAEAQFRDLVSRYPTH   72 (129)
T ss_dssp             TCHHHHHHHHHHHHHHCTTS
T ss_pred             ccHHHHHHHHHHHHHHCCCC
Confidence            45788888888888888887

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=95.63  E-value=0.018  Score=39.89  Aligned_cols=22  Identities=18%  Similarity=0.301  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .+.|++|.++|++|++.+|+|.
T Consensus        55 ~~~~~~A~~~~~~al~~~p~~~   76 (228)
T 4i17_A           55 IKKYKEAADYFDIAIKKNYNLA   76 (228)
T ss_dssp             TTCHHHHHHHHHHHHHTTCSHH
T ss_pred             hhcHHHHHHHHHHHHHhCcchH
Confidence            3344555555555555555443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=95.58  E-value=0.041  Score=39.11  Aligned_cols=31  Identities=16%  Similarity=0.312  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCcHHHHHHHHHhh
Q 033160           19 EYFNKATLYFQQAVDEEPSNELYQKSLEVAA   49 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~   49 (126)
                      +.|++|..+|+++++.+|+++.+++++.+..
T Consensus       209 ~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~  239 (261)
T 3qky_A          209 ERYRRAVELYERLLQIFPDSPLLRTAEELYT  239 (261)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            7789999999999999999998888876544

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=95.58  E-value=0.017  Score=46.48  Aligned_cols=44  Identities=18%  Similarity=0.080  Sum_probs=32.3

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL   45 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL   45 (126)
                      .++|+.-+++||.               -...+.|++|.++|++|++.+|+|.....+|
T Consensus        73 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  131 (568)
T 2vsy_A           73 HAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQL  131 (568)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3577888888877               2334557899999999999999887555444

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=95.56  E-value=0.02  Score=40.42  Aligned_cols=44  Identities=20%  Similarity=0.277  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLE   46 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe   46 (126)
                      ++|+.-|++|+.               -...+.|++|.++|++|++++|+|......|-
T Consensus       253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  311 (330)
T 3hym_B          253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLG  311 (330)
T ss_dssp             HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHH
Confidence            456666666665               33455677777788888887777765555443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=95.55  E-value=0.0095  Score=40.46  Aligned_cols=23  Identities=13%  Similarity=0.372  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcH
Q 033160           17 AKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        17 A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ..+.|++|.++|+++++.+|++.
T Consensus       171 ~~~~~~~A~~~~~~~~~~~~~~~  193 (243)
T 2q7f_A          171 NEGMLDEALSQFAAVTEQDPGHA  193 (243)
T ss_dssp             HHTCCHHHHHHHHHHHHHCTTCH
T ss_pred             HcCCHHHHHHHHHHHHHhCcccH
Confidence            34455666666666666666655

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.55  E-value=0.01  Score=39.22  Aligned_cols=37  Identities=22%  Similarity=0.112  Sum_probs=28.8

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCc
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSN   38 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~N   38 (126)
                      ..+|+.-|++||.               ....+.|++|.++|+++++.+|++
T Consensus        25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A           25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            4678888888888               344566788899999999988883

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=95.52  E-value=0.034  Score=40.25  Aligned_cols=22  Identities=14%  Similarity=0.217  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .+.|++|.++|++|++.+|++.
T Consensus       264 ~g~~~~A~~~~~~al~~~~~~~  285 (368)
T 1fch_A          264 GNQSEEAVAAYRRALELQPGYI  285 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cCCHHHHHHHHHHHHHhCCCcH
Confidence            3456677777777777777665

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=95.49  E-value=0.006  Score=38.60  Aligned_cols=38  Identities=16%  Similarity=0.139  Sum_probs=31.2

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .++|+.-|++||.               -..++.|++|.++|++|+++.|++.
T Consensus        23 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~   75 (100)
T 3ma5_A           23 ASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG   75 (100)
T ss_dssp             HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence            4688999999988               4456678999999999999988654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=95.45  E-value=0.033  Score=34.72  Aligned_cols=31  Identities=16%  Similarity=0.131  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 033160           17 AKEYFNKATLYFQQAVDEEPSNELYQKSLEV   47 (126)
Q Consensus        17 A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~   47 (126)
                      ..+.+++|.++|+++++.+|+++....++..
T Consensus        88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~  118 (129)
T 2xev_A           88 GEGKNTEAQQTLQQVATQYPGSDAARVAQER  118 (129)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            3456899999999999999999877776643

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=95.43  E-value=0.018  Score=34.89  Aligned_cols=38  Identities=13%  Similarity=0.162  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160            8 KLEEALMDEAKEYFNKATLYFQQAVDEEPSNELYQKSL   45 (126)
Q Consensus         8 KleeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL   45 (126)
                      -+..+..-...+.|++|.++|++|++.+|+|.....+|
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   44 (111)
T 2l6j_A            7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNK   44 (111)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            33444444556679999999999999999997544444

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=95.42  E-value=0.067  Score=32.05  Aligned_cols=39  Identities=23%  Similarity=0.319  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELY   41 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~Y   41 (126)
                      ++|+.-|++++.               -...+.+++|..+|+++++.+|++...
T Consensus        18 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~   71 (136)
T 2fo7_A           18 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA   71 (136)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHH
Confidence            567777777765               223446788888888888888887633

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=95.40  E-value=0.058  Score=34.41  Aligned_cols=22  Identities=14%  Similarity=0.218  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .+.|++|.++|+++++.+|+|.
T Consensus        89 ~~~~~~A~~~~~~~~~~~~~~~  110 (186)
T 3as5_A           89 VQKYDLAVPLLIKVAEANPINF  110 (186)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hcCHHHHHHHHHHHHhcCcHhH
Confidence            3456677777777777777665

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=95.38  E-value=0.041  Score=37.30  Aligned_cols=37  Identities=24%  Similarity=0.269  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++|+.-|++++.               -...+.|++|.++|+++++.+|+|.
T Consensus        74 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  125 (243)
T 2q7f_A           74 ERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENG  125 (243)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSH
T ss_pred             HHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence            456666666665               2233456777777777777777665

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.38  E-value=0.019  Score=42.86  Aligned_cols=47  Identities=26%  Similarity=0.287  Sum_probs=35.1

Q ss_pred             hHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160            2 ILDAISKLEEALMDE-----------------AKEYFNKATLYFQQAVDEEPSNELYQKSLEVA   48 (126)
Q Consensus         2 i~dAisKleeAL~~~-----------------A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a   48 (126)
                      ++++|.=||+.+...                 -+..|++|.+||+++|+.||+|..=+..+++.
T Consensus        51 ~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           51 IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            678888888888732                 12358999999999999999998554444433

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=95.35  E-value=0.043  Score=40.24  Aligned_cols=21  Identities=29%  Similarity=0.368  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCcH
Q 033160           19 EYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      +.|++|.++|++|++.+|+|.
T Consensus       227 g~~~~A~~~~~~al~~~p~~~  247 (365)
T 4eqf_A          227 GEFNRAIDAFNAALTVRPEDY  247 (365)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCHHHHHHHHHHHHHhCCCCH
Confidence            345555555555555555554

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=95.30  E-value=0.023  Score=42.77  Aligned_cols=26  Identities=19%  Similarity=0.215  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcHHHH
Q 033160           17 AKEYFNKATLYFQQAVDEEPSNELYQ   42 (126)
Q Consensus        17 A~~~f~kA~~~FqkAvd~dP~Ne~Yk   42 (126)
                      ..+.|++|.++|++|++.+|+|..-.
T Consensus       212 ~~g~~~eA~~~l~~al~~~p~~~~~l  237 (291)
T 3mkr_A          212 AQGRWEAAEGVLQEALDKDSGHPETL  237 (291)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            34456777777777777777766433

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=95.30  E-value=0.016  Score=43.07  Aligned_cols=18  Identities=22%  Similarity=0.514  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHhcCCCc
Q 033160           21 FNKATLYFQQAVDEEPSN   38 (126)
Q Consensus        21 f~kA~~~FqkAvd~dP~N   38 (126)
                      |++|..+|++|++.+|+|
T Consensus       219 ~~~A~~~~~~al~~~p~~  236 (388)
T 1w3b_A          219 FDRAVAAYLRALSLSPNH  236 (388)
T ss_dssp             TTHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhhCcCC
Confidence            344444444444444443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=95.27  E-value=0.03  Score=41.61  Aligned_cols=20  Identities=25%  Similarity=0.149  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHhcCCCcH
Q 033160           20 YFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        20 ~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .+++|.++|++|++.+|++.
T Consensus       184 ~~~~A~~~~~~al~~~p~~~  203 (388)
T 1w3b_A          184 EIWLAIHHFEKAVTLDPNFL  203 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCH
T ss_pred             CHHHHHHHHHHHHhcCCCcH
Confidence            35677777777777777763

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=95.24  E-value=0.024  Score=38.49  Aligned_cols=47  Identities=17%  Similarity=0.119  Sum_probs=36.5

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcC------CCcHHHHHHHHHh
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEE------PSNELYQKSLEVA   48 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~d------P~Ne~YkKsLe~a   48 (126)
                      .++|+.-|++||.               -...+.+++|.++|++|++.+      |+|...+..|..+
T Consensus       189 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          189 FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            3567777777776               334566899999999999999      9998887777654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=95.19  E-value=0.029  Score=33.25  Aligned_cols=23  Identities=13%  Similarity=0.349  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcHH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNEL   40 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne~   40 (126)
                      .+.|++|..+|++|++.+|++..
T Consensus        19 ~~~~~~A~~~~~~a~~~~~~~~~   41 (112)
T 2kck_A           19 AGNYTESIDLFEKAIQLDPEESK   41 (112)
T ss_dssp             SCCHHHHHHHHHHHHHHCCCCHH
T ss_pred             hhhHHHHHHHHHHHHHhCcCCHH
Confidence            45689999999999999999873

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=95.11  E-value=0.023  Score=45.80  Aligned_cols=46  Identities=17%  Similarity=0.236  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA   48 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a   48 (126)
                      ++|+.-+++||.               -..++.|++|..+|++|++++|+|......|..+
T Consensus       334 ~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~  394 (457)
T 1kt0_A          334 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC  394 (457)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            567777777777               3344568899999999999999998666666544

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=95.02  E-value=0.073  Score=36.13  Aligned_cols=41  Identities=17%  Similarity=0.168  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160            4 DAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL   45 (126)
Q Consensus         4 dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL   45 (126)
                      -|+.-+.+|+.       .+|+.+|.+|.++|.+++..+||... |..|
T Consensus        15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~-k~~l   62 (86)
T 4a5x_A           15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTK-RCNL   62 (86)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHH-HHHH
Confidence            46777777877       89999999999999999999997653 4443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=95.01  E-value=0.04  Score=41.22  Aligned_cols=45  Identities=20%  Similarity=0.307  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV   47 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~   47 (126)
                      ++|+.-+++|+.               -...+.|++|.++|++|++++|+|......|..
T Consensus       312 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  371 (450)
T 2y4t_A          312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK  371 (450)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            456666666654               223345777778888888888877766666643

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=94.96  E-value=0.061  Score=32.57  Aligned_cols=29  Identities=14%  Similarity=0.283  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 033160           17 AKEYFNKATLYFQQAVDEEPSNELYQKSLE   46 (126)
Q Consensus        17 A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe   46 (126)
                      ..+.|++|.++|+++++.+|+ ......|.
T Consensus        91 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~  119 (131)
T 1elr_A           91 KEEKYKDAIHFYNKSLAEHRT-PDVLKKCQ  119 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCC-HHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence            345678889999999998884 54444443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=94.96  E-value=0.11  Score=39.68  Aligned_cols=21  Identities=33%  Similarity=0.509  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCcH
Q 033160           19 EYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      +.|++|..+|++|++.+|+|.
T Consensus       442 ~~~~~A~~~~~~a~~~~p~~~  462 (537)
T 3fp2_A          442 EKFNAAIKLLTKACELDPRSE  462 (537)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCH
T ss_pred             hHHHHHHHHHHHHHHhCCCCH
Confidence            788888888888888888876

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=94.94  E-value=0.035  Score=44.70  Aligned_cols=42  Identities=24%  Similarity=0.339  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHHHhhcCchhHHHHH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLEVAAKAPELHMEIH   59 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe~a~KAPelH~ei~   59 (126)
                      ++.|++|..+|++|++++|+|.                     .|+++|++.-.-++.+.++-
T Consensus       330 ~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~  392 (457)
T 1kt0_A          330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIS  392 (457)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3458999999999999999996                     55666666555555555443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=94.93  E-value=0.061  Score=37.84  Aligned_cols=21  Identities=19%  Similarity=0.457  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCcH
Q 033160           19 EYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      +.|++|.++|+++++.+|++.
T Consensus       186 ~~~~~A~~~~~~~~~~~~~~~  206 (327)
T 3cv0_A          186 NNYDSAAANLRRAVELRPDDA  206 (327)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCH
T ss_pred             ccHHHHHHHHHHHHHhCCCcH
Confidence            446677777777777777654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=94.91  E-value=0.069  Score=36.78  Aligned_cols=23  Identities=13%  Similarity=0.166  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcHH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNEL   40 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne~   40 (126)
                      .+.+++|.++|+++++.+|++..
T Consensus       188 ~g~~~~A~~~~~~~~~~~~~~~~  210 (252)
T 2ho1_A          188 EREYVPARQYYDLFAQGGGQNAR  210 (252)
T ss_dssp             TTCHHHHHHHHHHHHTTSCCCHH
T ss_pred             cCCHHHHHHHHHHHHHhCcCcHH
Confidence            34467777777777777776653

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=94.90  E-value=0.096  Score=31.68  Aligned_cols=23  Identities=26%  Similarity=0.421  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcH
Q 033160           17 AKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        17 A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ..+.|++|..+|++|++.+|+|.
T Consensus        16 ~~~~~~~A~~~~~~a~~~~~~~~   38 (131)
T 1elr_A           16 KKKDFDTALKHYDKAKELDPTNM   38 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HhcCHHHHHHHHHHHHhcCCccH
Confidence            34455666666666666666554

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=94.82  E-value=0.091  Score=36.97  Aligned_cols=22  Identities=23%  Similarity=0.336  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .+.|++|.++|++|++.+|+|.
T Consensus       172 ~~~~~~A~~~~~~al~~~~~~~  193 (330)
T 3hym_B          172 TNNSKLAERFFSQALSIAPEDP  193 (330)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HhhHHHHHHHHHHHHHhCCCCh
Confidence            3446777777778887777775

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=94.80  E-value=0.0091  Score=39.92  Aligned_cols=29  Identities=17%  Similarity=0.220  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160           17 AKEYFNKATLYFQQAVDEEPSNELYQKSL   45 (126)
Q Consensus        17 A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL   45 (126)
                      ..+.|++|.++|++|++.+|+|..+...|
T Consensus        56 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l   84 (177)
T 2e2e_A           56 WQNDYSNSLLAYRQALQLRGENAELYAAL   84 (177)
T ss_dssp             HTTCHHHHHHHHHHHHHHHCSCHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            34557788888888888888776544443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=94.74  E-value=0.013  Score=45.24  Aligned_cols=28  Identities=18%  Similarity=0.286  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 033160           19 EYFNKATLYFQQAVDEEPSNELYQKSLE   46 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne~YkKsLe   46 (126)
                      +.|++|..+|++|++++|+|...+..|.
T Consensus       278 g~~~~A~~~l~~al~l~p~~~~a~~~L~  305 (338)
T 2if4_A          278 GQMDSARDDFRKAQKYAPDDKAIRRELR  305 (338)
T ss_dssp             TCHHHHHHHHHHTTC-------------
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            3456666666666666666655555543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=94.72  E-value=0.025  Score=38.28  Aligned_cols=21  Identities=10%  Similarity=0.245  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCcH
Q 033160           19 EYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      +.|++|.++|++|++.+|++.
T Consensus        51 g~~~~A~~~~~~al~~~~~~~   71 (213)
T 1hh8_A           51 KNMTEAEKAFTRSINRDKHLA   71 (213)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCHHHHHHHHHHHHHhCccch
Confidence            344555555555555555543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=94.56  E-value=0.072  Score=40.06  Aligned_cols=38  Identities=21%  Similarity=0.132  Sum_probs=29.7

Q ss_pred             hHHHHHHHHHHHH----------HHH-------HHHHHHHHHHHHHHHhcCCCcH
Q 033160            2 ILDAISKLEEALM----------DEA-------KEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         2 i~dAisKleeAL~----------~~A-------~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .++|+.-|++++.          ..+       .+.|++|..+|+++++.+|+|.
T Consensus       146 ~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~  200 (291)
T 3mkr_A          146 LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTL  200 (291)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcH
Confidence            3577788888776          122       1578999999999999999987

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=94.46  E-value=0.051  Score=42.39  Aligned_cols=28  Identities=14%  Similarity=0.138  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNELYQKSL   45 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne~YkKsL   45 (126)
                      .+.+++|.++|+++++++|+|......|
T Consensus       563 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l  590 (597)
T 2xpi_A          563 KKIPGLAITHLHESLAISPNEIMASDLL  590 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            3455667777777777777666555544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=94.45  E-value=0.084  Score=37.11  Aligned_cols=40  Identities=18%  Similarity=0.073  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQ   42 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~Yk   42 (126)
                      ++|+.-|++++.               -...+.|++|.++|++|++.+|+|....
T Consensus       189 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  243 (327)
T 3cv0_A          189 DSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVM  243 (327)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence            566666777665               2234568899999999999999886433

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=94.44  E-value=0.0069  Score=49.88  Aligned_cols=61  Identities=25%  Similarity=0.333  Sum_probs=0.0

Q ss_pred             ChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH-----HHhhcCchhHHHHHHh
Q 033160            1 MILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL-----EVAAKAPELHMEIHKH   61 (126)
Q Consensus         1 Mi~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL-----e~a~KAPelH~ei~kq   61 (126)
                      |++.|+.-+.+|+.       .+|..+|.+|.+||.+|+..++.|+..+..+     |.-..|=+|...+.+.
T Consensus         7 ~~~~A~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~l~~~~k~e~~~~~~k~~ir~k~~ey~~Rae~Lk~~l~k~   79 (444)
T 2zan_A            7 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKK   79 (444)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            56788888888888       8999999999999999999886666544433     4445666666555543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=94.43  E-value=0.06  Score=45.71  Aligned_cols=57  Identities=11%  Similarity=0.040  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHH--------H---------------HHHHHHHHHHHHHHHHHHhcCCCcH--------------------
Q 033160            3 LDAISKLEEAL--------M---------------DEAKEYFNKATLYFQQAVDEEPSNE--------------------   39 (126)
Q Consensus         3 ~dAisKleeAL--------~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne--------------------   39 (126)
                      ++|+.-|++||        .               -...+.|++|.++|++|++.+|+|.                    
T Consensus       408 ~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~  487 (681)
T 2pzi_A          408 VQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSAT  487 (681)
T ss_dssp             HHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHH
Confidence            67888899998        3               2234558999999999999999995                    


Q ss_pred             -HHHHHHHHhhcCchhHHHHH
Q 033160           40 -LYQKSLEVAAKAPELHMEIH   59 (126)
Q Consensus        40 -~YkKsLe~a~KAPelH~ei~   59 (126)
                       .|+++|++.-..++.|..+=
T Consensus       488 ~~~~~al~l~P~~~~~~~~lg  508 (681)
T 2pzi_A          488 KHFTEVLDTFPGELAPKLALA  508 (681)
T ss_dssp             HHHHHHHHHSTTCSHHHHHHH
T ss_pred             HHHHHHHHhCCCChHHHHHHH
Confidence             66777777766777765543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=94.33  E-value=0.022  Score=43.94  Aligned_cols=21  Identities=19%  Similarity=0.210  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCcH
Q 033160           19 EYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      +.|++|..+|++|++++|+|.
T Consensus       244 g~~~~A~~~~~~al~~~p~~~  264 (338)
T 2if4_A          244 KRYDEAIGHCNIVLTEEEKNP  264 (338)
T ss_dssp             TCCHHHHHHHHHHHHHCTTCH
T ss_pred             CCHHHHHHHHHHHHHhCCCCH
Confidence            347899999999999999997

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=94.25  E-value=0.15  Score=37.67  Aligned_cols=19  Identities=16%  Similarity=0.176  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHh-cCCCcH
Q 033160           21 FNKATLYFQQAVD-EEPSNE   39 (126)
Q Consensus        21 f~kA~~~FqkAvd-~dP~Ne   39 (126)
                      +++|..+|++|++ .+|+|.
T Consensus        80 ~~~A~~~~~rAl~~~~p~~~   99 (308)
T 2ond_A           80 SDEAANIYERAISTLLKKNM   99 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCH
T ss_pred             hHHHHHHHHHHHHHhCcccH
Confidence            3788888888888 688886

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=94.20  E-value=0.03  Score=35.17  Aligned_cols=38  Identities=16%  Similarity=0.087  Sum_probs=30.3

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .++|+.-|++||.               -...+.+++|..+|++|++++|++.
T Consensus        35 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~   87 (115)
T 2kat_A           35 FDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRG   87 (115)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            3678888888887               3445678999999999999998653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=94.15  E-value=0.073  Score=39.04  Aligned_cols=38  Identities=21%  Similarity=0.287  Sum_probs=29.8

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .++|+.-|++||.               -...+.|++|.++|++|++.+|+|.
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  133 (365)
T 4eqf_A           81 LPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL  133 (365)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence            4678888888887               2334568899999999999999876

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=94.14  E-value=0.043  Score=40.88  Aligned_cols=21  Identities=14%  Similarity=0.113  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHhcCCCcH
Q 033160           19 EYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      +.|++|..+|++|++.+|+|.
T Consensus       131 g~~~~A~~~~~~al~~~P~~~  151 (287)
T 3qou_A          131 SNYTDALPLLXDAWQLSNQNG  151 (287)
T ss_dssp             TCHHHHHHHHHHHHHHTTSCH
T ss_pred             CCHHHHHHHHHHHHHhCCcch
Confidence            344445555555555555444

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=94.13  E-value=0.089  Score=34.87  Aligned_cols=40  Identities=25%  Similarity=0.249  Sum_probs=27.4

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELY   41 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~Y   41 (126)
                      .++|+.-|++++.               -...+.|++|.++|++|++.+|+|...
T Consensus        24 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   78 (225)
T 2vq2_A           24 YRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEI   78 (225)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Confidence            3567777777766               223445788888888888888877543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=93.99  E-value=0.12  Score=38.70  Aligned_cols=21  Identities=19%  Similarity=0.368  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCcH
Q 033160           19 EYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      +.|++|.++|+++++.+|+|.
T Consensus       108 g~~~~A~~~~~~~~~~~~~~~  128 (450)
T 2y4t_A          108 GKLDEAEDDFKKVLKSNPSEN  128 (450)
T ss_dssp             TCHHHHHHHHHHHHTSCCCHH
T ss_pred             CCHHHHHHHHHHHHhcCCCCh
Confidence            345666666666666666654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=93.99  E-value=0.061  Score=37.02  Aligned_cols=43  Identities=19%  Similarity=-0.008  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL   45 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL   45 (126)
                      ++|+.-|++++.               -...+.+++|.++|+++++.+|+|..++.-|
T Consensus       192 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  249 (252)
T 2ho1_A          192 VPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ  249 (252)
T ss_dssp             HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            456666666654               3445678999999999999999999887655

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=93.97  E-value=0.069  Score=43.54  Aligned_cols=47  Identities=15%  Similarity=0.118  Sum_probs=37.3

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA   48 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a   48 (126)
                      .++|+.-+++||.               -..++.|++|.++|++|++.+|+|......|..+
T Consensus        56 ~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~  117 (477)
T 1wao_1           56 YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  117 (477)
T ss_dssp             HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3678888888887               3456679999999999999999998666665444

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=93.95  E-value=0.091  Score=39.60  Aligned_cols=46  Identities=22%  Similarity=0.258  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA   48 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a   48 (126)
                      ++|+.-|++|+.               -...+.+++|.++|++|++.+|+|.....+|...
T Consensus       432 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  492 (514)
T 2gw1_A          432 IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA  492 (514)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            567777777766               3344568899999999999999988776666433

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=93.87  E-value=0.077  Score=39.46  Aligned_cols=37  Identities=11%  Similarity=-0.003  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++|+.-|++||.               -..++.|++|..+|++|++++|+|.
T Consensus        21 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~   72 (281)
T 2c2l_A           21 PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV   72 (281)
T ss_dssp             HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence            577888888887               3345568888899999999999886

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=93.77  E-value=0.1  Score=39.58  Aligned_cols=46  Identities=13%  Similarity=0.029  Sum_probs=34.5

Q ss_pred             hHHHHHHHHHHHH-----HHH--------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 033160            2 ILDAISKLEEALM-----DEA--------------KEYFNKATLYFQQAVDEEPSNELYQKSLEV   47 (126)
Q Consensus         2 i~dAisKleeAL~-----~~A--------------~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~   47 (126)
                      .++|+.-|+.||.     ..+              +..|++|.++|++|+.++|++....++++.
T Consensus       350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~  414 (472)
T 4g1t_A          350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDK  414 (472)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence            4789999999987     110              123689999999999999999766655543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=93.62  E-value=0.074  Score=35.94  Aligned_cols=38  Identities=13%  Similarity=0.132  Sum_probs=30.4

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .++|+.-+++|+.               -...+.|++|.++|++|++..|+|.
T Consensus        53 ~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~  105 (213)
T 1hh8_A           53 MTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ  105 (213)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence            3578888888887               2345668999999999999999875

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=93.49  E-value=0.1  Score=35.25  Aligned_cols=21  Identities=5%  Similarity=-0.157  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCCc
Q 033160           18 KEYFNKATLYFQQAVDEEPSN   38 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~N   38 (126)
                      .+.|++|..+|+++++.+|++
T Consensus       121 ~g~~~~A~~~~~~~l~~~p~~  141 (176)
T 2r5s_A          121 VGRDEEALELLWNILKVNLGA  141 (176)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTT
T ss_pred             cccHHHHHHHHHHHHHhCccc
Confidence            345666666666666666653

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=93.46  E-value=0.2  Score=33.17  Aligned_cols=22  Identities=14%  Similarity=0.153  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHhcCC-CcHH
Q 033160           19 EYFNKATLYFQQAVDEEP-SNEL   40 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP-~Ne~   40 (126)
                      +.|++|.++|+++++.+| ++..
T Consensus       161 ~~~~~A~~~~~~~~~~~~~~~~~  183 (225)
T 2vq2_A          161 GQLGDADYYFKKYQSRVEVLQAD  183 (225)
T ss_dssp             TCHHHHHHHHHHHHHHHCSCCHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCCHH
Confidence            345555555555555555 4443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=93.44  E-value=0.096  Score=38.94  Aligned_cols=42  Identities=7%  Similarity=0.032  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCc--HHHHHHH
Q 033160            4 DAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSN--ELYQKSL   45 (126)
Q Consensus         4 dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~N--e~YkKsL   45 (126)
                      +|+.-|++||.               -...+.|++|.++|++++..+|++  ..-+++|
T Consensus       203 ~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l  261 (287)
T 3qou_A          203 PEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF  261 (287)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred             ccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence            46666777766               234456778888888888888877  4444443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=93.41  E-value=0.1  Score=41.93  Aligned_cols=20  Identities=20%  Similarity=0.147  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCC
Q 033160           18 KEYFNKATLYFQQAVDEEPS   37 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~   37 (126)
                      .+.|++|.+||++|++++|+
T Consensus       150 ~g~~~~A~~~~~~al~~~p~  169 (474)
T 4abn_A          150 KGDVTSAHTCFSGALTHCKN  169 (474)
T ss_dssp             HTCHHHHHHHHHHHHTTCCC
T ss_pred             cCCHHHHHHHHHHHHhhCCC
Confidence            34456666666666666665

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=93.39  E-value=0.13  Score=36.45  Aligned_cols=28  Identities=29%  Similarity=0.304  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNELYQKSL   45 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne~YkKsL   45 (126)
                      .+.|++|..+|+++++.+|+|.....++
T Consensus       110 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~  137 (261)
T 3qky_A          110 QTDTRKAIEAFQLFIDRYPNHELVDDAT  137 (261)
T ss_dssp             CHHHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             chhHHHHHHHHHHHHHHCcCchhHHHHH
Confidence            6789999999999999999997555444

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=93.33  E-value=0.16  Score=32.29  Aligned_cols=42  Identities=17%  Similarity=0.114  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKS   44 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKs   44 (126)
                      ++|+.-|++++.               -...+.|++|.++|+++++.+|++......
T Consensus        93 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  149 (186)
T 3as5_A           93 DLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRA  149 (186)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHH
Confidence            456666666665               233456899999999999999998643333

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=93.30  E-value=0.13  Score=37.19  Aligned_cols=38  Identities=18%  Similarity=0.202  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNEL   40 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~   40 (126)
                      ++|+.-|++|+.               -...+.|++|.++|++|++.+|+|..
T Consensus        81 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  133 (368)
T 1fch_A           81 PNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT  133 (368)
T ss_dssp             HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHH
Confidence            567777777776               22345577888888888888887763

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=93.21  E-value=0.079  Score=36.75  Aligned_cols=37  Identities=19%  Similarity=0.187  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++|+.-|+.|+.               -...+.|++|.++|++|++.+|+|.
T Consensus        91 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  142 (272)
T 3u4t_A           91 SLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDP  142 (272)
T ss_dssp             HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCH
T ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcH
Confidence            456666666666               2334556777777777777777765

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=93.06  E-value=0.039  Score=37.40  Aligned_cols=23  Identities=17%  Similarity=0.143  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcHHH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNELY   41 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne~Y   41 (126)
                      .+.|++|..+|++++..+| |..|
T Consensus        53 ~g~~~~A~~~~~~a~~~~p-~~~~   75 (176)
T 2r5s_A           53 TKQFELAQELLATIPLEYQ-DNSY   75 (176)
T ss_dssp             TTCHHHHHHHHTTCCGGGC-CHHH
T ss_pred             CCCHHHHHHHHHHhhhccC-ChHH
Confidence            3456777777777777777 5433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=92.89  E-value=0.11  Score=36.64  Aligned_cols=37  Identities=16%  Similarity=0.094  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            3 LDAISKLEEALM------------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         3 ~dAisKleeAL~------------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++|+.-|++++.                  -...+.|++|.++|+++++.+|+|.
T Consensus        21 ~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~   75 (225)
T 2yhc_A           21 RQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP   75 (225)
T ss_dssp             HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence            577888888775                  1123557899999999999999986

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=92.85  E-value=0.35  Score=35.70  Aligned_cols=16  Identities=13%  Similarity=0.401  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHhcCC
Q 033160           21 FNKATLYFQQAVDEEP   36 (126)
Q Consensus        21 f~kA~~~FqkAvd~dP   36 (126)
                      +++|..+|++|++.+|
T Consensus       150 ~~~A~~~~~~a~~~~p  165 (308)
T 2ond_A          150 IKSGRMIFKKAREDAR  165 (308)
T ss_dssp             HHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHHHHhcCC
Confidence            4444444555544444

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=92.47  E-value=0.28  Score=38.21  Aligned_cols=22  Identities=9%  Similarity=0.089  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .+.+++|.++|+++++.+|+|.
T Consensus       529 ~g~~~~A~~~~~~~~~~~p~~~  550 (597)
T 2xpi_A          529 LKMYDAAIDALNQGLLLSTNDA  550 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHSSCCH
T ss_pred             hcCHHHHHHHHHHHHHhCCCCh
Confidence            3457899999999999999886

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=92.41  E-value=0.21  Score=38.13  Aligned_cols=44  Identities=16%  Similarity=0.049  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLE   46 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe   46 (126)
                      ++|+.-|++|+.               -...+.+++|.++|++|++++|+++.....+.
T Consensus       445 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  503 (537)
T 3fp2_A          445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT  503 (537)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHh
Confidence            567777777776               34456789999999999999999987665554

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=92.15  E-value=0.27  Score=37.03  Aligned_cols=37  Identities=22%  Similarity=0.103  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            3 LDAISKLEEALM--------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         3 ~dAisKleeAL~--------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++|+.-|++||.              -...+.|++|.++|++|++.+|+|.
T Consensus        23 ~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~   73 (514)
T 2gw1_A           23 DDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYS   73 (514)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCH
T ss_pred             HHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHH
Confidence            567777777776              3335668888899999999999885

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=92.00  E-value=0.47  Score=33.33  Aligned_cols=24  Identities=17%  Similarity=0.130  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCcHHHH
Q 033160           19 EYFNKATLYFQQAVDEEPSNELYQ   42 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne~Yk   42 (126)
                      +.+++|..+|+++++.+|++....
T Consensus       110 ~~~~~A~~~~~~~l~~~P~~~~a~  133 (225)
T 2yhc_A          110 QQARAAFSDFSKLVRGYPNSQYTT  133 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCTTHH
T ss_pred             HHHHHHHHHHHHHHHHCcCChhHH
Confidence            478999999999999999997443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=91.97  E-value=0.21  Score=37.06  Aligned_cols=25  Identities=8%  Similarity=0.084  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCc
Q 033160           14 MDEAKEYFNKATLYFQQAVDEEPSN   38 (126)
Q Consensus        14 ~~~A~~~f~kA~~~FqkAvd~dP~N   38 (126)
                      .......|++|.+||+||++++|++
T Consensus        20 ~l~~~g~~eeAi~~Y~kAL~l~p~~   44 (159)
T 2hr2_A           20 RQLVAGEYDEAAANCRRAMEISHTM   44 (159)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCCCC
Confidence            3455678999999999999999993

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=91.86  E-value=0.29  Score=29.17  Aligned_cols=38  Identities=24%  Similarity=0.347  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNEL   40 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~   40 (126)
                      ++|+.-|++++.               -...+.|++|.++|+++++.+|++..
T Consensus        52 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  104 (136)
T 2fo7_A           52 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE  104 (136)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence            567777777765               12234589999999999999998753

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=91.15  E-value=0.28  Score=30.19  Aligned_cols=18  Identities=17%  Similarity=0.301  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHhcCC
Q 033160           19 EYFNKATLYFQQAVDEEP   36 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP   36 (126)
                      ..|++|.++|++|++..+
T Consensus        63 g~~~~A~~~~~~a~~~~~   80 (164)
T 3ro3_A           63 GEFETASEYYKKTLLLAR   80 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            345666666666666543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=91.10  E-value=0.19  Score=31.01  Aligned_cols=14  Identities=21%  Similarity=0.301  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHhc
Q 033160           21 FNKATLYFQQAVDE   34 (126)
Q Consensus        21 f~kA~~~FqkAvd~   34 (126)
                      |++|.++|++|++.
T Consensus       105 ~~~A~~~~~~a~~~  118 (164)
T 3ro3_A          105 YEKAIDYHLKHLAI  118 (164)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            45555555555544

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=90.96  E-value=0.34  Score=35.36  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHH---hcCCCcH
Q 033160           18 KEYFNKATLYFQQAV---DEEPSNE   39 (126)
Q Consensus        18 ~~~f~kA~~~FqkAv---d~dP~Ne   39 (126)
                      .+.|++|.+||++|+   +..|++.
T Consensus       168 ~~~~~~A~~~~~kal~~~~~~~~~~  192 (293)
T 2qfc_A          168 NGYLKKGIDLFEQILKQLEALHDNE  192 (293)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCccc
Confidence            345678888888888   5566643

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=90.13  E-value=0.28  Score=41.22  Aligned_cols=40  Identities=13%  Similarity=0.100  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 033160            3 LDAISKLEEALM--------------DEAKEYFNKATLYFQQAVDEEPSNELYQ   42 (126)
Q Consensus         3 ~dAisKleeAL~--------------~~A~~~f~kA~~~FqkAvd~dP~Ne~Yk   42 (126)
                      ++|+.-|+.||.              .+-...+++|.+.|.+|+.++|..++|.
T Consensus       294 d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~  347 (372)
T 3ly7_A          294 DESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY  347 (372)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence            455566666655              2334456667777777777777666553

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=89.48  E-value=0.34  Score=35.70  Aligned_cols=37  Identities=16%  Similarity=0.110  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            3 LDAISKLEEALM---------------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         3 ~dAisKleeAL~---------------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++|+.-+++||.                     -...+.|++|.++|++|++.+|+|.
T Consensus       135 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  192 (292)
T 1qqe_A          135 AKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence            567777777776                     1122457899999999999999875

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.30  E-value=0.33  Score=36.28  Aligned_cols=34  Identities=29%  Similarity=0.307  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            6 ISKLEEALMDEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         6 isKleeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      -++||||-.-...+.|++|.++|+++++.+|++.
T Consensus         5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~   38 (434)
T 4b4t_Q            5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQS   38 (434)
T ss_dssp             THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSS
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccc
Confidence            3689999776667789999999999999999863

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=89.03  E-value=1.5  Score=28.75  Aligned_cols=17  Identities=12%  Similarity=0.145  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHHHhc
Q 033160           18 KEYFNKATLYFQQAVDE   34 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~   34 (126)
                      .+.|++|.++|++|++.
T Consensus        79 ~g~~~~A~~~~~~al~~   95 (203)
T 3gw4_A           79 AGNWDAARRCFLEEREL   95 (203)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHH
Confidence            34566777777777776

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=88.99  E-value=0.5  Score=34.49  Aligned_cols=19  Identities=5%  Similarity=0.232  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHhcCCCc
Q 033160           20 YFNKATLYFQQAVDEEPSN   38 (126)
Q Consensus        20 ~f~kA~~~FqkAvd~dP~N   38 (126)
                      .|++|.+||++|++..+++
T Consensus       130 ~~~~A~~~~~~al~~~~~~  148 (293)
T 2qfc_A          130 DYEYCILELKKLLNQQLTG  148 (293)
T ss_dssp             CHHHHHHHHHHHHTTCCCS
T ss_pred             CHHHHHHHHHHHHHHHhcC
Confidence            5789999999999866544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=88.89  E-value=0.26  Score=36.44  Aligned_cols=20  Identities=20%  Similarity=0.210  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCc
Q 033160           19 EYFNKATLYFQQAVDEEPSN   38 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~N   38 (126)
                      +.|++|.++|++|++..+++
T Consensus       317 g~~~~A~~~~~~al~~~~~~  336 (411)
T 4a1s_A          317 HEFNTAIEYHNRHLAIAQEL  336 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHC
Confidence            45677777777777765543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=88.51  E-value=1.2  Score=30.76  Aligned_cols=28  Identities=11%  Similarity=0.001  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160           12 ALMDEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        12 AL~~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      +..-...+.|++|..+|++|++.+|+|.
T Consensus        12 g~~~~~~g~~~~A~~~~~~al~~~~~~~   39 (338)
T 3ro2_A           12 GERLCKSGDCRAGVSFFEAAVQVGTEDL   39 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCSCH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhhCcccH
Confidence            3334556678888888888888888873

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=88.49  E-value=0.45  Score=35.27  Aligned_cols=35  Identities=14%  Similarity=0.181  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 033160            9 LEEALMDEAKEYFNKATLYFQQAVDEEPSNELYQK   43 (126)
Q Consensus         9 leeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne~YkK   43 (126)
                      .+.|..-...+.|++|.++|++|++.+|+|..+..
T Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   42 (281)
T 2c2l_A            8 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYT   42 (281)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHH
Confidence            44445555667799999999999999999874433

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=88.45  E-value=0.74  Score=34.46  Aligned_cols=31  Identities=29%  Similarity=0.522  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHh
Q 033160            3 LDAISKLEEALM---------------------DEAKEYFNKATLYFQQAVD   33 (126)
Q Consensus         3 ~dAisKleeAL~---------------------~~A~~~f~kA~~~FqkAvd   33 (126)
                      ++|+.-|++||.                     -..++.|++|.+||++|++
T Consensus       201 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  252 (383)
T 3ulq_A          201 EDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA  252 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            567777777775                     2234457888888888888

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=88.43  E-value=0.84  Score=37.72  Aligned_cols=37  Identities=22%  Similarity=0.085  Sum_probs=28.1

Q ss_pred             hHHHHHHHHHHHH----------------HHHH------HHHHHHHHHHHHHHhcCCCc
Q 033160            2 ILDAISKLEEALM----------------DEAK------EYFNKATLYFQQAVDEEPSN   38 (126)
Q Consensus         2 i~dAisKleeAL~----------------~~A~------~~f~kA~~~FqkAvd~dP~N   38 (126)
                      +.+|..-||.||.                -.+.      .-.++|.++|+|||+++|++
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~  237 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH  237 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence            4567778888888                1111      35689999999999999976

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=88.05  E-value=0.64  Score=34.98  Aligned_cols=21  Identities=19%  Similarity=-0.081  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHh-----cCCCc
Q 033160           18 KEYFNKATLYFQQAVD-----EEPSN   38 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd-----~dP~N   38 (126)
                      .+.|++|.+||++|++     .+|.+
T Consensus       235 ~~~~~~A~~~~~~al~~~~~~~~~~~  260 (378)
T 3q15_A          235 SGDDQMAVEHFQKAAKVSREKVPDLL  260 (378)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCChhH
Confidence            4567888888888888     66654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=88.05  E-value=1.4  Score=32.43  Aligned_cols=25  Identities=12%  Similarity=0.096  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160           15 DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      -...+.|++|.++|++|++.+|+|.
T Consensus        58 ~~~~g~~~~A~~~~~~al~~~~~~~   82 (411)
T 4a1s_A           58 LCNAGDCRAGVAFFQAAIQAGTEDL   82 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCSCH
T ss_pred             HHHhCcHHHHHHHHHHHHHhcccCh
Confidence            4455678899999999999999874

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=86.76  E-value=1.2  Score=32.28  Aligned_cols=28  Identities=11%  Similarity=0.001  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160           12 ALMDEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        12 AL~~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      +..-.....|++|..+|++|++.+|+|.
T Consensus        16 g~~~~~~g~~~~A~~~~~~al~~~~~~~   43 (406)
T 3sf4_A           16 GERLCKSGDCRAGVSFFEAAVQVGTEDL   43 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCSCH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCcccH
Confidence            3334456678899999999999999873

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=86.49  E-value=2.8  Score=30.47  Aligned_cols=18  Identities=6%  Similarity=0.237  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHhcCCC
Q 033160           20 YFNKATLYFQQAVDEEPS   37 (126)
Q Consensus        20 ~f~kA~~~FqkAvd~dP~   37 (126)
                      .|++|.+||++|+++.++
T Consensus       130 ~~~~Ai~~~~~al~~~~~  147 (293)
T 3u3w_A          130 DYEYCILELKKLLNQQLT  147 (293)
T ss_dssp             CHHHHHHHHHHHHHTCCC
T ss_pred             CHHHHHHHHHHHHHHhcc
Confidence            457888888888875443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=86.46  E-value=0.57  Score=30.59  Aligned_cols=19  Identities=37%  Similarity=0.566  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHhcCCCcH
Q 033160           21 FNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        21 f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .++|..+|++||.+||+|.
T Consensus        25 ~~~A~~~l~~AL~~dp~~~   43 (93)
T 3bee_A           25 TDEVSLLLEQALQLEPYNE   43 (93)
T ss_dssp             CHHHHHHHHHHHHHCTTCH
T ss_pred             CHHHHHHHHHHHHHCcCCH
Confidence            4899999999999999997

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=86.39  E-value=0.62  Score=34.28  Aligned_cols=38  Identities=16%  Similarity=0.098  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHhcCCCcHH
Q 033160            3 LDAISKLEEALM----------------------DEAKEYFNKATLYFQQAVDEEPSNEL   40 (126)
Q Consensus         3 ~dAisKleeAL~----------------------~~A~~~f~kA~~~FqkAvd~dP~Ne~   40 (126)
                      ++|+.-|++|+.                      -...+.+++|..||++|++++|++..
T Consensus       175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  234 (292)
T 1qqe_A          175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD  234 (292)
T ss_dssp             HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred             HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence            567777777776                      11234589999999999999998654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=86.09  E-value=0.82  Score=34.36  Aligned_cols=17  Identities=18%  Similarity=-0.011  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHhcCC
Q 033160           20 YFNKATLYFQQAVDEEP   36 (126)
Q Consensus        20 ~f~kA~~~FqkAvd~dP   36 (126)
                      .|++|.+||++|++..+
T Consensus       156 ~~~~A~~~~~~al~~~~  172 (378)
T 3q15_A          156 QTHVSMYHILQALDIYQ  172 (378)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHH
Confidence            34566666666666533

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=85.56  E-value=1.1  Score=35.68  Aligned_cols=27  Identities=11%  Similarity=0.055  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNELYQKSL   45 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne~YkKsL   45 (126)
                      +..+++|..+|+++++.+|+ +-....|
T Consensus       221 lGr~deA~~~l~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          221 QGNESAAVALLEWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             HTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence            34446666666666666665 4444444

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=85.41  E-value=0.74  Score=34.12  Aligned_cols=20  Identities=10%  Similarity=0.092  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCcH
Q 033160           19 EYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ..+++|..||++|+ ++|++.
T Consensus       209 g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          209 ADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             TCHHHHHHHHHHHT-TSTTST
T ss_pred             CCHHHHHHHHHHHh-CCCCCC
Confidence            45788999999999 888654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=85.10  E-value=2.4  Score=34.32  Aligned_cols=27  Identities=22%  Similarity=0.357  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCcH---HHHHHH
Q 033160           19 EYFNKATLYFQQAVDEEPSNE---LYQKSL   45 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne---~YkKsL   45 (126)
                      +.++++.+||++|+..+|+|+   .|++-|
T Consensus       207 ~~~~eEle~~~~ai~~~P~d~SaW~Y~r~l  236 (331)
T 3dss_A          207 NVLLKELELVQNAFFTDPNDQSAWFYHRWL  236 (331)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            678999999999999999999   477766

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=85.07  E-value=1.2  Score=29.25  Aligned_cols=16  Identities=6%  Similarity=0.013  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHHHHhc
Q 033160           19 EYFNKATLYFQQAVDE   34 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~   34 (126)
                      +.|++|..+|++|++.
T Consensus       121 g~~~~A~~~~~~al~~  136 (203)
T 3gw4_A          121 GDLAGARQEYEKSLVY  136 (203)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            3455666666666543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=84.95  E-value=0.6  Score=34.95  Aligned_cols=19  Identities=21%  Similarity=0.266  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHhcCCC
Q 033160           19 EYFNKATLYFQQAVDEEPS   37 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~   37 (126)
                      +.|++|.++|++|++..|+
T Consensus       198 g~~~~A~~~~~~al~~~~~  216 (383)
T 3ulq_A          198 KQYEDAISHFQKAYSMAEA  216 (383)
T ss_dssp             TCHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHH
Confidence            4678888888888877553

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=84.92  E-value=4  Score=32.30  Aligned_cols=16  Identities=13%  Similarity=0.401  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHhcCC
Q 033160           21 FNKATLYFQQAVDEEP   36 (126)
Q Consensus        21 f~kA~~~FqkAvd~dP   36 (126)
                      +++|.++|++|++..|
T Consensus       372 ~~~A~~~~~~Al~~~~  387 (530)
T 2ooe_A          372 IKSGRMIFKKAREDAR  387 (530)
T ss_dssp             HHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHhccC
Confidence            4444445555544444

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=84.86  E-value=1.2  Score=31.35  Aligned_cols=37  Identities=16%  Similarity=0.260  Sum_probs=25.8

Q ss_pred             hHHHHHHHHHHHH----------H---HH----HHHHHHHHHHHHHHHhcCCCc
Q 033160            2 ILDAISKLEEALM----------D---EA----KEYFNKATLYFQQAVDEEPSN   38 (126)
Q Consensus         2 i~dAisKleeAL~----------~---~A----~~~f~kA~~~FqkAvd~dP~N   38 (126)
                      .++|+.-|+.|+.          .   ..    ...+++|.++|++|++.+|.+
T Consensus       166 ~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~  219 (273)
T 1ouv_A          166 LKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGG  219 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHH
Confidence            3567777777765          1   12    456788888888888888744

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=83.96  E-value=1.2  Score=32.26  Aligned_cols=19  Identities=16%  Similarity=0.204  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHhcCCC
Q 033160           19 EYFNKATLYFQQAVDEEPS   37 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~   37 (126)
                      +.|++|.++|++|++..++
T Consensus       281 g~~~~A~~~~~~a~~~~~~  299 (406)
T 3sf4_A          281 QDYEKAIDYHLKHLAIAQE  299 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHh
Confidence            4466777777777766443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=83.73  E-value=1.8  Score=32.10  Aligned_cols=38  Identities=13%  Similarity=0.086  Sum_probs=30.1

Q ss_pred             hHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            2 ILDAISKLEEALM----------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         2 i~dAisKleeAL~----------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++.+|.=||+-+.                .-=+..|++|..|-...|+.||+|.
T Consensus        59 ~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~  112 (134)
T 3o48_A           59 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  112 (134)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence            4677888888776                2224458999999999999999997

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=83.57  E-value=0.63  Score=32.13  Aligned_cols=18  Identities=22%  Similarity=0.316  Sum_probs=11.3

Q ss_pred             HHHHHHHHHHHHHHhcCC
Q 033160           19 EYFNKATLYFQQAVDEEP   36 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP   36 (126)
                      +.|++|.++|++|++..|
T Consensus        97 g~~~~A~~~~~~al~~~~  114 (338)
T 3ro2_A           97 GNFDEAIVCCQRHLDISR  114 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHH
Confidence            446666777777666544

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=83.32  E-value=1.5  Score=34.81  Aligned_cols=40  Identities=18%  Similarity=0.229  Sum_probs=29.3

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELY   41 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~Y   41 (126)
                      +++|..-+|.||.               ....+.+++|...|++||...|+.+++
T Consensus        28 ~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw   82 (530)
T 2ooe_A           28 IDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLW   82 (530)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHH
Confidence            4567777888877               223356889999999999999965543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=82.77  E-value=0.88  Score=33.01  Aligned_cols=21  Identities=29%  Similarity=0.518  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCcH
Q 033160           19 EYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ..|++|..|+...|+.||+|.
T Consensus        88 g~Y~~A~~~~~~lL~~eP~n~  108 (126)
T 1nzn_A           88 KEYEKALKYVRGLLQTEPQNN  108 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCH
T ss_pred             hhHHHHHHHHHHHHHhCCCCH
Confidence            458999999999999999996

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=82.07  E-value=0.99  Score=30.60  Aligned_cols=17  Identities=12%  Similarity=0.262  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHHHHHhc
Q 033160           18 KEYFNKATLYFQQAVDE   34 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~   34 (126)
                      .+.|++|.++|++|++.
T Consensus        56 ~g~~~~A~~~~~~al~~   72 (283)
T 3edt_B           56 QNKYKEAAHLLNDALAI   72 (283)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHH
Confidence            34567777777777766

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=81.22  E-value=0.61  Score=34.57  Aligned_cols=20  Identities=15%  Similarity=0.129  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCc
Q 033160           19 EYFNKATLYFQQAVDEEPSN   38 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~N   38 (126)
                      +.|++|.++|++|+++.|++
T Consensus       169 g~~~~A~~~~~~al~~~~~~  188 (307)
T 2ifu_A          169 QKFDEAAASLQKEKSMYKEM  188 (307)
T ss_dssp             TCHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHc
Confidence            34566666666666665544

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=81.13  E-value=2.5  Score=31.60  Aligned_cols=51  Identities=12%  Similarity=0.081  Sum_probs=35.9

Q ss_pred             hHHHHHHHHHHHH-----------HHH-----HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchhHHHHHHhc
Q 033160            2 ILDAISKLEEALM-----------DEA-----KEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHG   62 (126)
Q Consensus         2 i~dAisKleeAL~-----------~~A-----~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPelH~ei~kq~   62 (126)
                      |+.+|.=||+-+.           --|     +..|++|..|-...|+.||+|.          +|=+|+..|.+.+
T Consensus        58 i~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~----------QA~~Lk~~Ie~~i  124 (144)
T 1y8m_A           58 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK----------QVGALKSMVEDKI  124 (144)
T ss_dssp             HHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH----------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH----------HHHHHHHHHHHHH
Confidence            4667888888776           112     2457999999999999999996          3445555555544

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=81.06  E-value=1.2  Score=30.27  Aligned_cols=16  Identities=13%  Similarity=0.355  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHhc
Q 033160           19 EYFNKATLYFQQAVDE   34 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~   34 (126)
                      +.|++|.++|++|++.
T Consensus       141 g~~~~A~~~~~~al~~  156 (283)
T 3edt_B          141 GKAEEVEYYYRRALEI  156 (283)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            4477788888888877

>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.07  E-value=6.3  Score=28.69  Aligned_cols=35  Identities=11%  Similarity=0.273  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCC-----cHHHHHHHHHhh
Q 033160           15 DEAKEYFNKATLYFQQAVDEEPS-----NELYQKSLEVAA   49 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP~-----Ne~YkKsLe~a~   49 (126)
                      ++|+++|.+..+++.++|.++.+     ++.|-++-+|=.
T Consensus        39 ~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~   78 (116)
T 2dl1_A           39 EEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQ   78 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHH
Confidence            89999999999999999998875     566665554433

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=80.02  E-value=0.92  Score=31.49  Aligned_cols=17  Identities=12%  Similarity=0.337  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHhcC
Q 033160           19 EYFNKATLYFQQAVDEE   35 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~d   35 (126)
                      +.|++|.++|++|++..
T Consensus       209 g~~~~A~~~~~~al~~~  225 (311)
T 3nf1_A          209 GKFKQAETLYKEILTRA  225 (311)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            44566666666666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	126
d1zu2a1	145	a.118.8.1 (A:1-145) Mitochondrial import receptor	6e-09

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 145

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 48.7 bits (114), Expect = 6e-09
 Identities = 31/51 (60%), Positives = 37/51 (72%)

Query: 14  MDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGLG 64
             EAK  F+ AT +FQQAVDE+P N  Y KSLE+ AKAP+LH E +K GLG
Sbjct: 95  ETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYKQGLG 145

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	126
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.63
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.84
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.69
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.61
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.55
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.54
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.44
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.43
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.35
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.23
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.22
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.21
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.14
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.13
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.1
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.97
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	96.92
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	96.91
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.84
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.79
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	96.78
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	96.76
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	96.63
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.62
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.62
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	96.58
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	96.52
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.51
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.51
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	96.08
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	95.7
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	95.52
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	95.48
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	95.25
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	94.97
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	94.76
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	94.22
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	94.17
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	94.15
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	93.93
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	93.26
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	92.82
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	92.64
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	91.84
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	91.77
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	90.0
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	86.97
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	86.04
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	84.3
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	83.13
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	80.78

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.63  E-value=2.7e-16  Score=109.61  Aligned_cols=63  Identities=62%  Similarity=0.881  Sum_probs=58.6

Q ss_pred             hHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchhH
Q 033160            2 ILDAISKLEEALM--------------------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELH   55 (126)
Q Consensus         2 i~dAisKleeAL~--------------------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPelH   55 (126)
                      +++||..++.||.                          .++.++|++|.+||++|+++||+|+.|+++|+++.|||++|
T Consensus        57 ~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~  136 (145)
T d1zu2a1          57 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLH  136 (145)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHH
Confidence            5789999999998                          36778999999999999999999999999999999999999


Q ss_pred             HHHHHhccc
Q 033160           56 MEIHKHGLG   64 (126)
Q Consensus        56 ~ei~kq~~~   64 (126)
                      .|++||++|
T Consensus       137 ~e~~k~~~~  145 (145)
T d1zu2a1         137 AEAYKQGLG  145 (145)
T ss_dssp             HHHHHSSSC
T ss_pred             HHHHHHhcC
Confidence            999999975

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.84  E-value=2.5e-05  Score=53.08  Aligned_cols=38  Identities=18%  Similarity=0.287  Sum_probs=33.1

Q ss_pred             hHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            2 ILDAISKLEEALM-------------------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         2 i~dAisKleeAL~-------------------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .++|+..+|.||.                         .++++.|++|.++|++|+++||+|.
T Consensus        13 fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~   75 (145)
T d1zu2a1          13 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD   75 (145)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhh
Confidence            4688888888887                         3678899999999999999999985

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=3e-05  Score=52.99  Aligned_cols=56  Identities=18%  Similarity=0.182  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHhcCCCcH---------------------HHH
Q 033160            3 LDAISKLEEALM-------------------DEAKEYFNKATLYFQQAVDEEPSNE---------------------LYQ   42 (126)
Q Consensus         3 ~dAisKleeAL~-------------------~~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~Yk   42 (126)
                      +.|+++++|+|.                   -..++.|++|.++|++|++++|+|.                     .|+
T Consensus        16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~   95 (259)
T d1xnfa_          16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD   95 (259)
T ss_dssp             HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhh
Confidence            467777777775                   1223446778888888888888776                     566


Q ss_pred             HHHHHhhcCchhHHHH
Q 033160           43 KSLEVAAKAPELHMEI   58 (126)
Q Consensus        43 KsLe~a~KAPelH~ei   58 (126)
                      ++|++...-++.|..+
T Consensus        96 ~al~~~p~~~~a~~~l  111 (259)
T d1xnfa_          96 SVLELDPTYNYAHLNR  111 (259)
T ss_dssp             HHHHHCTTCTHHHHHH
T ss_pred             HHHHHHhhhhhhHHHH
Confidence            6666655555555443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=4.7e-05  Score=48.27  Aligned_cols=45  Identities=18%  Similarity=0.209  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHH------------HH----------HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 033160            3 LDAISKLEEALM------------DE----------AKEYFNKATLYFQQAVDEEPSNELYQKSLEV   47 (126)
Q Consensus         3 ~dAisKleeAL~------------~~----------A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~   47 (126)
                      +.||.-||+||.            .+          ..+.|++|.++|++||++||+|+.=..+|..
T Consensus        22 ~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~   88 (95)
T d1tjca_          22 YHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKY   88 (95)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            578999999987            12          2235799999999999999999977777754

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.55  E-value=5.3e-05  Score=50.19  Aligned_cols=38  Identities=11%  Similarity=-0.009  Sum_probs=32.5

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .++||..|++||.               -..++.|++|.+||++|++++|+|.
T Consensus        20 ~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~   72 (201)
T d2c2la1          20 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV   72 (201)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcH
Confidence            3689999999998               3445678999999999999999997

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=9e-05  Score=47.97  Aligned_cols=37  Identities=27%  Similarity=0.145  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++||..+++||.               -..++.|++|.++|.+|++++|+|.
T Consensus        20 ~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~   71 (117)
T d1elwa_          20 DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG   71 (117)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchh
Confidence            567777777766               3334556666666666666666665

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.44  E-value=0.00012  Score=49.39  Aligned_cols=47  Identities=19%  Similarity=0.202  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhh
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA   49 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~   49 (126)
                      ++|+.=+++||.               -..++.|++|..||++|+++||+|...++.|..+.
T Consensus        84 ~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          84 PKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             chhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            467777777777               56677899999999999999999998888887764

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.43  E-value=7.9e-05  Score=50.34  Aligned_cols=48  Identities=19%  Similarity=0.160  Sum_probs=38.3

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhh
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA   49 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~   49 (126)
                      .++||.-++.||.               -.-++.|++|.++|++|++++|+|+..+..|..+.
T Consensus        93 ~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~  155 (169)
T d1ihga1          93 WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK  155 (169)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3577777888777               34456789999999999999999998888886554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=9.4e-05  Score=49.58  Aligned_cols=46  Identities=24%  Similarity=0.263  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160            3 LDAISKLEEALM-----------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA   48 (126)
Q Consensus         3 ~dAisKleeAL~-----------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a   48 (126)
                      +.||+=||++|.                 -.-++.|++|.+||++||++||+|.-.++.+..-
T Consensus        53 ~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I  115 (122)
T d1nzna_          53 RKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  115 (122)
T ss_dssp             HHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            458888888875                 2235668999999999999999999888777543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.23  E-value=0.00027  Score=45.45  Aligned_cols=46  Identities=17%  Similarity=0.157  Sum_probs=32.5

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV   47 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~   47 (126)
                      .++|+.-|++||.               -...+.|++|..||++|++++|+|.....+|-+
T Consensus        32 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~   92 (112)
T d1hxia_          32 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV   92 (112)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHH
Confidence            4577777777777               444556778888888888888888766555533

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.22  E-value=0.00031  Score=47.68  Aligned_cols=59  Identities=19%  Similarity=0.218  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchhHHHHHHh
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKH   61 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPelH~ei~kq   61 (126)
                      .+||.=+++||.               -..++.|++|.+||++|+++||+|....+.|......=+-|.+-+|.
T Consensus        81 ~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk  154 (168)
T d1kt1a1          81 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRR  154 (168)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence            577888888887               45556689999999999999999998888887665444444444443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00045  Score=45.18  Aligned_cols=23  Identities=26%  Similarity=0.421  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcH
Q 033160           17 AKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        17 A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      -...|++|.+||++|++++|+|.
T Consensus        16 ~~~~y~~Ai~~y~~al~~~p~~~   38 (128)
T d1elra_          16 KKKDFDTALKHYDKAKELDPTNM   38 (128)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HcCCHHHHHHHHHHHHHhCcccH
Confidence            34568999999999999999988

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00049  Score=45.70  Aligned_cols=15  Identities=13%  Similarity=-0.028  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHhcCCC
Q 033160           23 KATLYFQQAVDEEPS   37 (126)
Q Consensus        23 kA~~~FqkAvd~dP~   37 (126)
                      +|.++|++||+++|+
T Consensus        62 ~A~~~~~kal~~~p~   76 (159)
T d1a17a_          62 YALGDATRAIELDKK   76 (159)
T ss_dssp             HHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHccc
Confidence            333333333333333

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00037  Score=44.96  Aligned_cols=45  Identities=16%  Similarity=0.158  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV   47 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~   47 (126)
                      ++|+.-++.||.               -.-++.|++|..+|++|++.+|+|..+...|.-
T Consensus        54 ~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~  113 (117)
T d1elwa_          54 QKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN  113 (117)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             cccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            567777777777               455678999999999999999999999888754

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00047  Score=47.11  Aligned_cols=49  Identities=27%  Similarity=0.265  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcC
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKA   51 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KA   51 (126)
                      ++|+.-+++||.               -..++.|++|..+|++|+++||+|...+..|..+.+.
T Consensus        79 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  142 (170)
T d1p5qa1          79 SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  142 (170)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            578888888888               4456678999999999999999999888888666443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00063  Score=47.69  Aligned_cols=38  Identities=16%  Similarity=0.141  Sum_probs=28.1

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .++|+.-|++|+.               -...+.|++|.++|++|++++|+|.
T Consensus       188 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  240 (323)
T d1fcha_         188 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI  240 (323)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence            3567777777776               3344567888888888888888876

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.00074  Score=45.81  Aligned_cols=37  Identities=19%  Similarity=0.222  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++|+.-|+.||.               -..++.|++|.++|++|++++|+|.
T Consensus        54 ~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  105 (259)
T d1xnfa_          54 ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  105 (259)
T ss_dssp             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhh
Confidence            567777777777               3445567788888888888888776

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00081  Score=44.57  Aligned_cols=47  Identities=15%  Similarity=0.118  Sum_probs=37.5

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA   48 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a   48 (126)
                      .++|+.-|+.||.               -..++.|++|.+||++|+.++|+|...+..|..+
T Consensus        60 ~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~  121 (159)
T d1a17a_          60 YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  121 (159)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            5678888888887               4456678999999999999999998766655433

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.84  E-value=0.0013  Score=44.07  Aligned_cols=42  Identities=24%  Similarity=0.301  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHHHhhcCchhHHHHHH
Q 033160           19 EYFNKATLYFQQAVDEEPSNE---------------------LYQKSLEVAAKAPELHMEIHK   60 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe~a~KAPelH~ei~k   60 (126)
                      +.|++|..+|++|+++||+|.                     .|+++|++.-.-++.+.+|-+
T Consensus        91 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~  153 (169)
T d1ihga1          91 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK  153 (169)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            469999999999999999997                     788888887776776655543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.79  E-value=0.00085  Score=42.98  Aligned_cols=51  Identities=22%  Similarity=0.299  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHHHhhcCchhHHHH
Q 033160            8 KLEEALMDEAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLEVAAKAPELHMEI   58 (126)
Q Consensus         8 KleeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe~a~KAPelH~ei   58 (126)
                      .++.++.-...+.|++|..+|++|++.+|+|.                     .|+++|++.-..++.+..+
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   90 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL   90 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHH
Confidence            46677777778889999999999999999998                     5666666665555555443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.78  E-value=0.0014  Score=43.84  Aligned_cols=41  Identities=10%  Similarity=0.069  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHHHhhcCchhHHHH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLEVAAKAPELHMEI   58 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe~a~KAPelH~ei   58 (126)
                      +..|++|.++|++||++||+|.                     .|+++|++.-.-++...++
T Consensus        80 l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l  141 (153)
T d2fbna1          80 NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSY  141 (153)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3568999999999999999996                     6666676654444444443

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.76  E-value=0.0034  Score=41.47  Aligned_cols=61  Identities=11%  Similarity=0.107  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcHH----HHHHHHHhhcCchhHHHHHHhc
Q 033160            2 ILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNEL----YQKSLEVAAKAPELHMEIHKHG   62 (126)
Q Consensus         2 i~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne~----YkKsLe~a~KAPelH~ei~kq~   62 (126)
                      .+.|++-+.+|+.       .+|..+|.+|.++|-+++..+|+...    -.|.-+.-..|=+|...|+++-
T Consensus        12 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~~~e~~~~~k~~l~~k~~eYl~RAE~LK~~l~~~~   83 (93)
T d1wfda_          12 STAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENIKKYLDQEK   83 (93)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678999999998       89999999999999999999997763    2344455566666666555544

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0011  Score=45.48  Aligned_cols=20  Identities=15%  Similarity=0.265  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHhcCCCcH
Q 033160           20 YFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        20 ~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .|++|.++|++|++.+|+|.
T Consensus       320 ~~~~A~~~~~~al~~~p~~~  339 (388)
T d1w3ba_         320 NIEEAVRLYRKALEVFPEFA  339 (388)
T ss_dssp             CHHHHHHHHHHHTTSCTTCH
T ss_pred             CHHHHHHHHHHHHHhCCCCH
Confidence            35667777777777777665

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.0013  Score=46.08  Aligned_cols=43  Identities=16%  Similarity=0.169  Sum_probs=31.8

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKS   44 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKs   44 (126)
                      +++|++-|++||.               -..++.|++|..||++|++++|+|......
T Consensus        35 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   92 (323)
T d1fcha_          35 LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA   92 (323)
T ss_dssp             HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccc
Confidence            4678888888888               344566888888888888888888644433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.62  E-value=0.002  Score=43.53  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++.|++|..+|++|+.+||+|.
T Consensus        77 l~~~~~Ai~~~~~al~l~p~~~   98 (168)
T d1kt1a1          77 LREYTKAVECCDKALGLDSANE   98 (168)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hhhcccchhhhhhhhhcccchH
Confidence            5568999999999999999998

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00056  Score=46.91  Aligned_cols=44  Identities=16%  Similarity=0.212  Sum_probs=33.6

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL   45 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL   45 (126)
                      .++|+.-|++||.               -...+.|++|.++|++|++++|+|.....+|
T Consensus       321 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l  379 (388)
T d1w3ba_         321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM  379 (388)
T ss_dssp             HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4677888888776               2233457999999999999999998665555

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.001  Score=42.62  Aligned_cols=40  Identities=25%  Similarity=0.343  Sum_probs=36.1

Q ss_pred             ChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcHH
Q 033160            1 MILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNEL   40 (126)
Q Consensus         1 Mi~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne~   40 (126)
                      +|+.|++-+.+|..       .+|..+|.+|.++|..++.-+|+|+.
T Consensus         7 ~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~~l~~e~~~~~   53 (77)
T d1wr0a1           7 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDK   53 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTGG
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCHH
Confidence            37889999999998       89999999999999999999998874

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.51  E-value=0.002  Score=45.38  Aligned_cols=47  Identities=13%  Similarity=0.089  Sum_probs=36.3

Q ss_pred             hHHHHHHHHHHHH------HH----------HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160            2 ILDAISKLEEALM------DE----------AKEYFNKATLYFQQAVDEEPSNELYQKSLEVA   48 (126)
Q Consensus         2 i~dAisKleeAL~------~~----------A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a   48 (126)
                      ++.||.=||+.+.      .+          -++.|++|..||+++|+.||+|.-.+.-.++.
T Consensus        54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~I  116 (124)
T d2pqrb1          54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  116 (124)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHH
Confidence            5789999999987      11          23458999999999999999999765544443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.002  Score=41.94  Aligned_cols=32  Identities=13%  Similarity=0.314  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 033160           15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSLE   46 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe   46 (126)
                      .++++.|++|.++|++|+..+|+++..++.-+
T Consensus        89 ~~~~~~~~~A~~~~~kal~~~~~~~~~~~l~~  120 (128)
T d1elra_          89 YFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQ  120 (128)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            57778999999999999999999887655443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0064  Score=41.19  Aligned_cols=22  Identities=23%  Similarity=0.288  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ++.|++|..+|.+|+++||+|.
T Consensus        75 ~~~~~~A~~~~~~al~~~p~~~   96 (170)
T d1p5qa1          75 LQAFSAAIESCNKALELDSNNE   96 (170)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hhhcccccchhhhhhhccccch
Confidence            3457999999999999999997

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.70  E-value=0.0025  Score=45.84  Aligned_cols=29  Identities=21%  Similarity=0.324  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160           17 AKEYFNKATLYFQQAVDEEPSNELYQKSL   45 (126)
Q Consensus        17 A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL   45 (126)
                      -++.|++|.+||++|+++||++-.|-..|
T Consensus       288 ~~~~~~eA~~~~~~ai~ldP~~~~y~~~L  316 (334)
T d1dcea1         288 PLLYEKETLQYFSTLKAVDPMRAAYLDDL  316 (334)
T ss_dssp             TGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCcccHHHHHHH
Confidence            35678999999999999999998887777

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.52  E-value=0.0056  Score=40.58  Aligned_cols=35  Identities=14%  Similarity=0.127  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 033160            4 DAISKLEEALMDEAKEYFNKATLYFQQAVDEEPSN   38 (126)
Q Consensus         4 dAisKleeAL~~~A~~~f~kA~~~FqkAvd~dP~N   38 (126)
                      +|-..|.++...--...|++|.++|++|+++.|++
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~   42 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTM   42 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhh
Confidence            44455555555444456888888888888888764

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.48  E-value=0.023  Score=37.48  Aligned_cols=13  Identities=15%  Similarity=0.105  Sum_probs=10.2

Q ss_pred             hHHHHHHHHHHHH
Q 033160            2 ILDAISKLEEALM   14 (126)
Q Consensus         2 i~dAisKleeAL~   14 (126)
                      .++||..+++||.
T Consensus        25 y~~Ai~~y~~Al~   37 (156)
T d2hr2a1          25 YDEAAANCRRAME   37 (156)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3678888888885

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.25  E-value=0.0093  Score=38.88  Aligned_cols=22  Identities=14%  Similarity=0.298  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .+.|++|.++|++|++++|+|.
T Consensus        17 ~g~~~~Ai~~~~kal~~~p~~~   38 (201)
T d2c2la1          17 GRKYPEAAACYGRAITRNPLVA   38 (201)
T ss_dssp             TTCHHHHHHHHHHHHHHCSCCH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCH
Confidence            4467999999999999999998

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.0064  Score=42.10  Aligned_cols=25  Identities=8%  Similarity=0.129  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160           15 DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      -..++.|++|.++|++|+++||++-
T Consensus        46 ~~~~g~~~~A~~~~~kAl~ldp~~~   70 (192)
T d1hh8a_          46 YTILKNMTEAEKAFTRSINRDKHLA   70 (192)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHcCCchhHHHHHHHHHHHhhhhh
Confidence            4456679999999999999999987

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.0053  Score=48.24  Aligned_cols=45  Identities=24%  Similarity=0.388  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHHHhhcCchhHHHHHH
Q 033160           16 EAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLEVAAKAPELHMEIHK   60 (126)
Q Consensus        16 ~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe~a~KAPelH~ei~k   60 (126)
                      .-++.|++|..||++|++++|+|.                     .|.|+|.+..--|.-+..|.+
T Consensus       163 ~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~  228 (497)
T d1ya0a1         163 RYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQK  228 (497)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            344568899999999999999886                     677777666555555555554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.22  E-value=0.049  Score=37.81  Aligned_cols=31  Identities=16%  Similarity=0.019  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160           15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSL   45 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL   45 (126)
                      ....+.|++|..+|++++..||.||.....|
T Consensus        77 ~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l  107 (179)
T d2ff4a2          77 EIACGRASAVIAELEALTFEHPYREPLWTQL  107 (179)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHCCCchHHHHHHHHHHHhCCccHHHHHHH
Confidence            3445679999999999999999999443333

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.17  E-value=0.02  Score=41.99  Aligned_cols=19  Identities=21%  Similarity=0.445  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHhcCCCcH
Q 033160           21 FNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        21 f~kA~~~FqkAvd~dP~Ne   39 (126)
                      |++|.+||++|+++||+|.
T Consensus       162 ~~~Al~~~~~al~~~p~n~  180 (315)
T d2h6fa1         162 WDNELQYVDQLLKEDVRNN  180 (315)
T ss_dssp             CTTHHHHHHHHHHHCTTCH
T ss_pred             hHHHHHHHHHHHHHCCccH
Confidence            3444444444444444443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.15  E-value=0.044  Score=40.14  Aligned_cols=19  Identities=21%  Similarity=0.501  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHhcCCCcH
Q 033160           21 FNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        21 f~kA~~~FqkAvd~dP~Ne   39 (126)
                      +++|.++|++|++.+|+|-
T Consensus        94 ~~eal~~~~~al~~~p~~~  112 (315)
T d2h6fa1          94 LHEEMNYITAIIEEQPKNY  112 (315)
T ss_dssp             HHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHHHhhh
Confidence            5666666666666666654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.93  E-value=0.016  Score=36.05  Aligned_cols=22  Identities=14%  Similarity=0.314  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCc
Q 033160           17 AKEYFNKATLYFQQAVDEEPSN   38 (126)
Q Consensus        17 A~~~f~kA~~~FqkAvd~dP~N   38 (126)
                      -...|++|.++|++|++..|++
T Consensus        17 ~~g~y~~A~~~~~~Al~~~~~~   38 (95)
T d1tjca_          17 TEADYYHTELWMEQALRQLDEG   38 (95)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHHHHHHHHhhh
Confidence            3456889999999999887765

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.26  E-value=0.092  Score=35.16  Aligned_cols=35  Identities=31%  Similarity=0.364  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhc
Q 033160           15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAK   50 (126)
Q Consensus        15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~K   50 (126)
                      +||.++|.+|..|++.|+++ |.|+.=.-||++=.+
T Consensus        25 deAIech~kA~~yl~eA~kl-t~s~~~l~SLqLQ~~   59 (83)
T d2crba1          25 EEAISCHRKATTYLSEAMKL-TESEQAHLSLELQRD   59 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence            89999999999999999999 778877778877543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.82  E-value=0.076  Score=34.73  Aligned_cols=33  Identities=15%  Similarity=-0.038  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160           16 EAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA   48 (126)
Q Consensus        16 ~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a   48 (126)
                      ...+-|++|.+.|++|+..+|+|.-.+-+|-.+
T Consensus        10 ~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~   42 (122)
T d1nzna_          10 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWC   42 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            356789999999999999999998666666554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=92.64  E-value=0.074  Score=39.33  Aligned_cols=44  Identities=20%  Similarity=0.114  Sum_probs=32.5

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL   45 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL   45 (126)
                      +++|+.-|++||.               -...+.|++|...|++|++++|++......+
T Consensus        12 l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l   70 (264)
T d1zbpa1          12 LQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL   70 (264)
T ss_dssp             HHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            4678888888887               3334558889999999999999887544443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=91.84  E-value=0.12  Score=34.16  Aligned_cols=21  Identities=19%  Similarity=0.112  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHhcCCCcH
Q 033160           19 EYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        19 ~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      +.|++|.++|++|++.+|+|+
T Consensus        26 g~~~~A~~~~~~aL~~~~~~~   46 (366)
T d1hz4a_          26 GNPDEAERLAKLALEELPPGW   46 (366)
T ss_dssp             TCHHHHHHHHHHHHHTCCTTC
T ss_pred             CCHHHHHHHHHHHHhhCcCCC
Confidence            457888888888888888764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.77  E-value=0.079  Score=36.28  Aligned_cols=38  Identities=13%  Similarity=0.132  Sum_probs=31.0

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .++|++-|++||.               -..++.|++|.++|+||++..|.|.
T Consensus        52 ~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~  104 (192)
T d1hh8a_          52 MTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ  104 (192)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             chhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCc
Confidence            4688999999998               3456678999999999998888764

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.00  E-value=0.54  Score=33.04  Aligned_cols=22  Identities=5%  Similarity=0.158  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      ...+++|..||++++..+|+|.
T Consensus        86 ~~~~~~al~~~~~~l~~~pk~~  107 (334)
T d1dcea1          86 AALVKAELGFLESCLRVNPKSY  107 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHHHhCCCcH
Confidence            3347889999999999999886

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=86.97  E-value=0.1  Score=34.52  Aligned_cols=21  Identities=10%  Similarity=-0.048  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCCc
Q 033160           18 KEYFNKATLYFQQAVDEEPSN   38 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~N   38 (126)
                      .+.+++|.++|++|+++.+.+
T Consensus       304 ~g~~~~A~~~l~~Al~l~~~~  324 (366)
T d1hz4a_         304 AGRKSDAQRVLLDALKLANRT  324 (366)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhhhc
Confidence            345678888888888775543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.04  E-value=1.8  Score=29.45  Aligned_cols=38  Identities=16%  Similarity=0.279  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHhcCCCcHH
Q 033160            3 LDAISKLEEALM----------------------DEAKEYFNKATLYFQQAVDEEPSNEL   40 (126)
Q Consensus         3 ~dAisKleeAL~----------------------~~A~~~f~kA~~~FqkAvd~dP~Ne~   40 (126)
                      ++|+.-++.+|.                      .+|+..|+.+...+.+-+.++|+.++
T Consensus        84 ~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          84 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            567777777777                      77888888888888888999999886

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.30  E-value=1.7  Score=30.53  Aligned_cols=22  Identities=14%  Similarity=0.314  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCCcH
Q 033160           18 KEYFNKATLYFQQAVDEEPSNE   39 (126)
Q Consensus        18 ~~~f~kA~~~FqkAvd~dP~Ne   39 (126)
                      .+.+++|.++|++|++..|++.
T Consensus       147 ~~~~~~ar~i~~~al~~~~~~~  168 (308)
T d2onda1         147 AEGIKSGRMIFKKAREDARTRH  168 (308)
T ss_dssp             HHCHHHHHHHHHHHHTSTTCCT
T ss_pred             cCChHHHHHHHHHHHHhCCCcH
Confidence            3445666666666666666554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.13  E-value=0.4  Score=33.68  Aligned_cols=38  Identities=18%  Similarity=0.142  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHhcCCCcHH
Q 033160            3 LDAISKLEEALM---------------------DEAKEYFNKATLYFQQAVDEEPSNEL   40 (126)
Q Consensus         3 ~dAisKleeAL~---------------------~~A~~~f~kA~~~FqkAvd~dP~Ne~   40 (126)
                      ++|+.-+++|+.                     -...+.|++|.++|++++..+|.+..
T Consensus       135 ~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~  193 (290)
T d1qqea_         135 AKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             HHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchh
Confidence            567777777764                     22334679999999999999998864

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.78  E-value=1.2  Score=34.31  Aligned_cols=45  Identities=13%  Similarity=0.079  Sum_probs=36.7

Q ss_pred             hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 033160            2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLE   46 (126)
Q Consensus         2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe   46 (126)
                      .++|+.=+++|+.               -.....+.+|..||.||+..+|....-+.||.
T Consensus       168 ~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~  227 (497)
T d1ya0a1         168 TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ  227 (497)
T ss_dssp             HHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            3577888888887               34467789999999999999999987777774