Citrus Sinensis ID: 033184

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MCSSIPAYGNGKEAGNEAGYIVGMSTCYPKPGFLRITDKETLIVESNYSSSHDHTGVMGLFYILVADRVPESSSFLDVFNKMYNDINHSAFVWGAFVLAGVAITAAAVGYWRRNKYEDGYQPIMI
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEcccccccccEEEEccccEEEEEEEEccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccEEEEEEcccccccEEEEEcccEEEEEEEccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEc
Coil and Loop (DISEMBL)
mcssipaygngkeagneaGYIVGmstcypkpgflritdKETLIVEsnyssshdhtGVMGLFYILVAdrvpesssfLDVFNKMYNDINHSAFVWGAFVLAGVAITAAAVGYWrrnkyedgyqpimi
Flexible Loop (DISEMBL)
MCSSIPAYGNGKEAGNEAGYIVGMSTCYPKPGFLRITDKETLIVESNYSSSHDHTGVMGLFYILVADRVPESSSFLDVFNKMYNDINHSAFVWGAFVLAGVAITAAAVGYWRRNkyedgyqpimi
Low Complexity Region (SEG)
MCSSIPAYGNGKEAGNEAGYIVGMSTCYPKPGFLRITDKETLIVESNYSSSHDHTGVMGLFYILVADRVPESSSFLDVFNKMYNDINHSAFVWGAFVLAGVAITAAAVGYWRRNKYEDGYQPIMI
Disordered region (IsUnstruct)
****************EAGYIVGMSTCYPKPGFLRITDKETLIVESNYSSSHDHTGVMGLFYILVADRVPESSSFLDVFNKMYNDINHSAFVWGAFVLAGVAITAAAVGYWRRNKYEDG******
Disordered Region (DISOPRED)
*CSSIPAYGNGKEAGNEAGYIVGMSTCYPKPGFLRITDKETLIVESNYSSSHDHTGVMGLFYILVADRVPESSSFLDVFNKMYNDINHSAFVWGAFVLAGVAITAAAVGYWRRNKYED*YQPIMI
Disordered Region (DISEMBL)
MCSSIPAYGNGKEAGNEAGYIVGMSTCYPKPGFLRITDKETLIVESNYSSSHDHTGVMGLFYILVADRVPESSSFLDVFNKMYNDINHSAFVWGAFVLAGVAITAAAVGYWRRNKYEDGYQPIMI
Disordered Region (DISPRO)
MCSSIPAYGNGKEAGNEAGYIVGMSTCYPKPGFLRITDKETLIVESNYSSSHDHTGVMGLFYILVADRVPESSSFLDVFNKMYNDINHSAFVWGAFVLAGVAITAAAVGYWRRNKYEDGYQPIMI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCSSIPAYGNGKEAGNEAGYIVGMSTCYPKPGFLRITDKETLIVESNYSSSHDHTGVMGLFYILVADRVPESSSFLDVFNKMYNDINHSAFVWGAFVLAGVAITAAAVGYWRRNKYEDGYQPIMI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
255540017	463	conserved hypothetical protein [Ricinus	0.992	0.267	0.584	6e-36
224134212	439	predicted protein [Populus trichocarpa]	0.992	0.282	0.536	1e-30
297734528	226	unnamed protein product [Vitis vinifera]	0.952	0.526	0.526	4e-27
359491145	465	PREDICTED: uncharacterized protein LOC10	0.952	0.255	0.526	1e-26
317106606	409	JHL07K02.3 [Jatropha curcas]	0.6	0.183	0.733	4e-26
52550577	435	MtN19-like protein [Pisum sativum]	0.672	0.193	0.619	3e-25
255540019	467	conserved hypothetical protein [Ricinus	0.968	0.259	0.5	5e-25
388502744	158	unknown [Medicago truncatula]	0.68	0.537	0.602	6e-25
388511801	425	unknown [Medicago truncatula]	0.68	0.2	0.602	1e-24
356510772	429	PREDICTED: uncharacterized protein LOC10	0.672	0.195	0.615	2e-24

>gi|255540017|ref|XP_002511073.1| conserved hypothetical protein [Ricinus communis] gi|223550188|gb|EEF51675.1| conserved hypothetical protein [Ricinus communis]

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 73/125 (58%), Positives = 92/125 (73%), Gaps = 1/125 (0%)

Query: 1   MCSSIPAYGNGKEAGNEAGYIVGMSTCYPKPGFLRITDKETLIVESNYSSSHDHTGVMGL 60
           +C+S+P YG G EAGNEAGYIVGMSTCYPKPG ++I D E LI+ES YS + +HTGVMGL
Sbjct: 338 ICTSVPIYGEGMEAGNEAGYIVGMSTCYPKPGSIKIADGENLILESRYSRAQEHTGVMGL 397

Query: 61  FYILVADRVPESSSFLDVFNKMYNDINHSAFVWGAFVLAGVAIT-AAAVGYWRRNKYEDG 119
           FYILVADRVPE   F++    ++ ++  SA+ W   VL G+A T A AVG W +   +DG
Sbjct: 398 FYILVADRVPERMPFIESLVYVHENMEPSAYRWAIVVLLGLATTLAVAVGSWLKKGKDDG 457

Query: 120 YQPIM 124
           YQPI+
Sbjct: 458 YQPIL 462

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134212|ref|XP_002321764.1| predicted protein [Populus trichocarpa] gi|222868760|gb|EEF05891.1| predicted protein [Populus trichocarpa]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/125 (53%), Positives = 86/125 (68%), Gaps = 1/125 (0%)

Query: 1   MCSSIPAYGNGKEAGNEAGYIVGMSTCYPKPGFLRITDKETLIVESNYSSSHDHTGVMGL 60
           +C+S+P YG GKEAGNEAGYIVGMSTCYP+PG ++IT  E L++ESNYS   +HTGVMGL
Sbjct: 314 ICTSLPTYGEGKEAGNEAGYIVGMSTCYPEPGSIQITAGEKLVLESNYSRDQNHTGVMGL 373

Query: 61  FYILVADRVPESSSFLDVFNKMYNDINHSAFVWGAFVLAGVAITAAAVGYWRRNK-YEDG 119
           FYILVADR P  +S L     M+ ++  S +      L G+AI  A   + R  K  E+G
Sbjct: 374 FYILVADRTPNPTSLLHAPIHMHVNMKGSTYAVAIIALFGMAIAVAVTVHSRLKKGREEG 433

Query: 120 YQPIM 124
           YQP++
Sbjct: 434 YQPML 438

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734528|emb|CBI15775.3| unnamed protein product [Vitis vinifera]

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/131 (52%), Positives = 88/131 (67%), Gaps = 12/131 (9%)

Query: 1   MCSSIPAYGNGKEAGNEAGYIVGMSTCYPKPGFLRITDKETLIVESNYSSSHDHTGVMGL 60
           +CSSIP YG GKEAGNEAGYIVGMSTCYP+PG ++I+D ETLI+ESNYSS+  HTGVMGL
Sbjct: 102 ICSSIPTYGEGKEAGNEAGYIVGMSTCYPQPGSVKISDGETLILESNYSSTQKHTGVMGL 161

Query: 61  FYILVADRVPESSSFL------DVFNKMYNDINHSAFVWGAFVLAGVAITAAAVGYWRRN 114
           FYILVA+  P  S  L         +K+YN ++  A +  A   A V +      Y RR 
Sbjct: 162 FYILVAEPSPNPSLLLHSPFDMHANSKVYNSVSAVALLGLAIAAAIVVV------YRRRK 215

Query: 115 KYEDGYQPIMI 125
           + E GY+ +++
Sbjct: 216 ETEYGYEALVV 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491145|ref|XP_002284739.2| PREDICTED: uncharacterized protein LOC100243857 [Vitis vinifera]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/131 (52%), Positives = 88/131 (67%), Gaps = 12/131 (9%)

Query: 1   MCSSIPAYGNGKEAGNEAGYIVGMSTCYPKPGFLRITDKETLIVESNYSSSHDHTGVMGL 60
           +CSSIP YG GKEAGNEAGYIVGMSTCYP+PG ++I+D ETLI+ESNYSS+  HTGVMGL
Sbjct: 341 ICSSIPTYGEGKEAGNEAGYIVGMSTCYPQPGSVKISDGETLILESNYSSTQKHTGVMGL 400

Query: 61  FYILVADRVPESSSFL------DVFNKMYNDINHSAFVWGAFVLAGVAITAAAVGYWRRN 114
           FYILVA+  P  S  L         +K+YN ++  A +  A   A V +      Y RR 
Sbjct: 401 FYILVAEPSPNPSLLLHSPFDMHANSKVYNSVSAVALLGLAIAAAIVVV------YRRRK 454

Query: 115 KYEDGYQPIMI 125
           + E GY+ +++
Sbjct: 455 ETEYGYEALVV 465

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106606|dbj|BAJ53113.1| JHL07K02.3 [Jatropha curcas]

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 55/75 (73%), Positives = 63/75 (84%)

Query: 1   MCSSIPAYGNGKEAGNEAGYIVGMSTCYPKPGFLRITDKETLIVESNYSSSHDHTGVMGL 60
           +C+S+P YGNG EAGNEAGYIVGMSTCYPKPG ++I+D E LI+ES YSS+  HTGVMGL
Sbjct: 335 ICTSVPTYGNGTEAGNEAGYIVGMSTCYPKPGSVKISDGENLILESKYSSAQRHTGVMGL 394

Query: 61  FYILVADRVPESSSF 75
           FYILVADR P  S F
Sbjct: 395 FYILVADRTPRHSPF 409

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52550577|gb|AAU14999.2| MtN19-like protein [Pisum sativum]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 72/92 (78%), Gaps = 8/92 (8%)

Query: 1   MCSSIPAYGNGKEAGNEAGYIVGMSTCYPKPGFLRITDKETLIVESNYSSSHDHTGVMGL 60
           +CSSIP+YGNG EAGNE+GYIVGMSTCYPKPG ++I D ETL +ESNY+S+ +HTGVMGL
Sbjct: 343 ICSSIPSYGNGNEAGNESGYIVGMSTCYPKPGSMKIMDGETLTLESNYNSTKEHTGVMGL 402

Query: 61  FYILVADRVP--------ESSSFLDVFNKMYN 84
           FYILVA+++P         SS F+D  N + +
Sbjct: 403 FYILVAEQLPYQHLRHSTRSSFFMDSNNMLLD 434

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540019|ref|XP_002511074.1| conserved hypothetical protein [Ricinus communis] gi|223550189|gb|EEF51676.1| conserved hypothetical protein [Ricinus communis]

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 66/132 (50%), Positives = 84/132 (63%), Gaps = 11/132 (8%)

Query: 1   MCSSIPAYGNGKEAGNEAGYIVGMSTCYPKPGFLRITDKETLIVESNYSSSHDHTGVMGL 60
           +C+S+P YG GKEAGNEAGYIVGMSTCYPKPG ++I D E L +ESNYSS+  HTGVMGL
Sbjct: 338 ICTSLPIYGEGKEAGNEAGYIVGMSTCYPKPGSVKIADGENLTLESNYSSTQTHTGVMGL 397

Query: 61  FYILVADRVPESSSFLDVFNKMYNDINHSA--FVWGAFVLAG------VAITAAAVGYWR 112
           FYILVAD+ P   + L   +    +   S   + WG   +A       VAIT  +     
Sbjct: 398 FYILVADQTPNPVTPLQTNHAHMQEYKKSPIHYSWGVAAVALLGLALTVAITKRS---QL 454

Query: 113 RNKYEDGYQPIM 124
           R + E+GY+ I+
Sbjct: 455 RKRIENGYESIL 466

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502744|gb|AFK39438.1| unknown [Medicago truncatula]

 Score =  117 bits (294), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 56/93 (60%), Positives = 73/93 (78%), Gaps = 8/93 (8%)

Query: 1   MCSSIPAYGNGKEAGNEAGYIVGMSTCYPKPGFLRITDKETLIVESNYSSSHDHTGVMGL 60
           +CSSIP+YGNG EAGNEAGYIVGMSTCYPK G ++I D ETL +ESNY+S+ +HTGVMGL
Sbjct: 66  ICSSIPSYGNGSEAGNEAGYIVGMSTCYPKSGSVKIIDGETLTLESNYNSTKEHTGVMGL 125

Query: 61  FYILVADRVP--------ESSSFLDVFNKMYND 85
           FY+LVA+++P         SS F+D+ N + ++
Sbjct: 126 FYLLVAEQLPYQHFRHSTRSSFFMDINNILLDN 158

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511801|gb|AFK43962.1| unknown [Medicago truncatula]

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/93 (60%), Positives = 73/93 (78%), Gaps = 8/93 (8%)

Query: 1   MCSSIPAYGNGKEAGNEAGYIVGMSTCYPKPGFLRITDKETLIVESNYSSSHDHTGVMGL 60
           +CSSIP+YGNG EAGNEAGYIVGMSTCYPK G ++I D ETL +ESNY+S+ +HTGVMGL
Sbjct: 333 ICSSIPSYGNGSEAGNEAGYIVGMSTCYPKSGSVKIIDGETLTLESNYNSTKEHTGVMGL 392

Query: 61  FYILVADRVP--------ESSSFLDVFNKMYND 85
           FY+LVA+++P         SS F+D+ N + ++
Sbjct: 393 FYLLVAEQLPYQHFRHSTRSSFFMDINNILLDN 425

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510772|ref|XP_003524108.1| PREDICTED: uncharacterized protein LOC100785991 [Glycine max]

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 71/91 (78%), Gaps = 7/91 (7%)

Query: 1   MCSSIPAYGNGKEAGNEAGYIVGMSTCYPKPGFLRITDKETLIVESNYSSSHDHTGVMGL 60
           +CSSIP+YG GKEAGNEA YIVGMSTCYP+PG ++I D ETL +ESNYSSS +HTGVMGL
Sbjct: 339 ICSSIPSYGKGKEAGNEADYIVGMSTCYPRPGSVKIIDGETLTLESNYSSSREHTGVMGL 398

Query: 61  FYILVADRVPES-------SSFLDVFNKMYN 84
           FY+LVA+++P+        SSF    N +++
Sbjct: 399 FYLLVAEQLPDQHFRHTSRSSFFMNINSIFH 429

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
TAIR|locus:2159178	475	AT5G61820 "AT5G61820" [Arabido	0.952	0.250	0.503	9.5e-25

TAIR|locus:2159178 AT5G61820 "AT5G61820" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 9.5e-25, P = 9.5e-25
 Identities = 64/127 (50%), Positives = 85/127 (66%)

Query:     1 MCSSIPAYGNGKEAGNEAGYIVGMSTCYPKPGFLRITDKETLIVESNYSSSHDHTGVMGL 60
             +C+S+P YGNG E GNEAGYIVGMS+CYP    ++++  ETL +ESNYS++  HTGVMGL
Sbjct:   351 ICASMPKYGNGDEPGNEAGYIVGMSSCYPADP-VKVSYGETLTLESNYSNAVGHTGVMGL 409

Query:    61 FYILVADRVPESSSFLDVFNKMYNDI--NHSAF--VWGAFVLAGVAITAAAVGYWRRNKY 116
             FYILVA ++PE  S L   NK + +      +F  ++   V+  V +  AAV Y RR K 
Sbjct:   410 FYILVAQQLPEPDSSLP--NKQHFEAPARSLSFLAIFAVTVVVAVVVLIAAVIY-RRQKR 466

Query:   117 EDGYQPI 123
             EDGYQ +
Sbjct:   467 EDGYQSL 473


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.422    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      125       125   0.00091  102 3  11 22  0.37    31
                                                     29  0.39    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  567 (60 KB)
  Total size of DFA:  135 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.67u 0.10s 11.77t   Elapsed:  00:00:00
  Total cpu time:  11.67u 0.10s 11.77t   Elapsed:  00:00:00
  Start:  Fri May 10 17:28:54 2013   End:  Fri May 10 17:28:54 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0009610 "response to symbiotic fungus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	125
pfam07712	382	pfam07712, SURNod19, Stress up-regulated Nod 19	1e-33

>gnl|CDD|219529 pfam07712, SURNod19, Stress up-regulated Nod 19

 Score =  119 bits (300), Expect = 1e-33
 Identities = 53/74 (71%), Positives = 64/74 (86%)

Query: 1   MCSSIPAYGNGKEAGNEAGYIVGMSTCYPKPGFLRITDKETLIVESNYSSSHDHTGVMGL 60
           +C+SIP YGNG EAGNEAGYIVGMSTCYP PG ++I+D ETL +ESNYS++  HTGVMGL
Sbjct: 309 ICASIPKYGNGDEAGNEAGYIVGMSTCYPIPGSVKISDGETLTLESNYSNAVGHTGVMGL 368

Query: 61  FYILVADRVPESSS 74
           FYILVA+++PE  S
Sbjct: 369 FYILVAEQLPEPDS 382

Length = 382

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
PF07712	381	SURNod19: Stress up-regulated Nod 19; InterPro: IP	100.0
PF01299	306	Lamp: Lysosome-associated membrane glycoprotein (L	84.12

>PF07712 SURNod19: Stress up-regulated Nod 19; InterPro: IPR011692 This family of plant proteins have been implicated in nodule development [] in the legume Medicago truncatula (Barrel medic)

Probab=100.00  E-value=1.3e-41  Score=290.11  Aligned_cols=73  Identities=70%  Similarity=1.276  Sum_probs=71.5

Q ss_pred             CcccCCCccCCCCCCCCcccEEEeeeeecCCCeeeeccCceEEEEEeecCCCCceehhhhhhhhhhccCCCCC
Q 033184            1 MCSSIPAYGNGKEAGNEAGYIVGMSTCYPKPGFLRITDKETLIVESNYSSSHDHTGVMGLFYILVADRVPESS   73 (125)
Q Consensus         1 iC~S~P~YG~G~eaGNE~GYvVGMStCyP~Pgs~kI~dGE~L~l~s~Ys~~~~hTGvMGlfyi~vAe~~p~~~   73 (125)
                      ||+|+|+||+|+|||||+|||||||||||+|||+||+|||+|||||+|||+++||||||||||+||||+|++.
T Consensus       309 lCsS~P~YG~G~EaGNE~GYvVGMStCyP~pgsvkI~dGE~L~l~s~Ys~~~~HTGVMGlfyilvAe~~p~~~  381 (381)
T PF07712_consen  309 LCSSIPQYGTGKEAGNEKGYVVGMSTCYPKPGSVKISDGETLTLESNYSNTQEHTGVMGLFYILVAEQLPHPE  381 (381)
T ss_pred             eeccccccCCCCcCCcccceEEEeeeeecCCCCeEecCCCEEEEEEEecCCCCccchHHHHHHHHhhhcCCCC
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999863

MtN-19 was shown by Northern blot to be induced during nodulation []. The molecular function of these proteins is unknown.

>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear

Probab=84.12  E-value=0.69  Score=37.75  Aligned_cols=17  Identities=41%  Similarity=0.397  Sum_probs=10.1

Q ss_pred             HHHhhhhhhcccccCCccc
Q 033184          105 AAAVGYWRRNKYEDGYQPI  123 (125)
Q Consensus       105 vA~v~~~~k~~~~~gY~~l  123 (125)
                      ||.+..|||  .+.|||++
T Consensus       290 iaYli~Rrr--~~~gYq~~  306 (306)
T PF01299_consen  290 IAYLIGRRR--SRAGYQSI  306 (306)
T ss_pred             HhheeEecc--cccccccC
Confidence            555555444  33499986

Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	125
2ov0_A	105	Amicyanin; beta-sandwich, electron transport; 0.75	88.6
1id2_A	106	Amicyanin; beta barrel, type-1 blue copper protein	88.22
3c75_A	132	Amicyanin; copper proteins, electron transfer comp	82.3
1bxv_A	91	Plastocyanin; copper protein, electron transfer; 1	80.24

>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...

Probab=88.60  E-value=0.48  Score=31.30  Aligned_cols=37  Identities=14%  Similarity=0.143  Sum_probs=29.9

Q ss_pred             CcccEEEeeeeecCCCeeeeccCceEEEEEeecCCCCce
Q 033184           17 EAGYIVGMSTCYPKPGFLRITDKETLIVESNYSSSHDHT   55 (125)
Q Consensus        17 E~GYvVGMStCyP~Pgs~kI~dGE~L~l~s~Ys~~~~hT   55 (125)
                      .+-|.|-|..|...|..++|..|+++++. |-+. ..|+
T Consensus        18 a~~~~V~~~~~~F~P~~i~v~~Gd~V~~~-N~d~-~~H~   54 (105)
T 2ov0_A           18 DGAIVVDIAKMKYETPELHVKVGDTVTWI-NREA-MPHN   54 (105)
T ss_dssp             TTCEEEEEETTEESSSEEEECTTCEEEEE-ECSS-SCBC
T ss_pred             CcCEEEEEeecEEcCCEEEECCCCEEEEE-ECCC-CCEE
Confidence            44589999999999999999999999996 3332 3565

>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1

Probab=88.22  E-value=0.59  Score=31.11  Aligned_cols=36  Identities=19%  Similarity=0.112  Sum_probs=29.9

Q ss_pred             cccEEEeeeeecCCCeeeeccCceEEEEEeecCCCCce
Q 033184           18 AGYIVGMSTCYPKPGFLRITDKETLIVESNYSSSHDHT   55 (125)
Q Consensus        18 ~GYvVGMStCyP~Pgs~kI~dGE~L~l~s~Ys~~~~hT   55 (125)
                      +-+.|.|..+...|..++|..|+++++. |-+. ..|+
T Consensus        20 ~~~~V~~~~~~F~P~~i~V~~G~tV~~~-N~d~-~~H~   55 (106)
T 1id2_A           20 DAVVVGIEKMKYLTPEVTIKAGETVYWV-NGEV-MPHN   55 (106)
T ss_dssp             TCEEEEEETTEESSSEEEECTTCEEEEE-ECSS-SCBC
T ss_pred             ccEEEEEEecEEeCCEEEECCCCEEEEE-ECCC-CcEE
Confidence            4588999999999999999999999987 4433 3675

>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=82.30  E-value=1.8  Score=30.06  Aligned_cols=35  Identities=20%  Similarity=0.118  Sum_probs=29.1

Q ss_pred             ccEEEeeeeecCCCeeeeccCceEEEEEeecCCCCce
Q 033184           19 GYIVGMSTCYPKPGFLRITDKETLIVESNYSSSHDHT   55 (125)
Q Consensus        19 GYvVGMStCyP~Pgs~kI~dGE~L~l~s~Ys~~~~hT   55 (125)
                      -+.|-|..+...|..++|..||++++. |-+. ..|+
T Consensus        47 ~~~V~~~~~~F~P~~i~V~~GdtV~~~-N~d~-~~H~   81 (132)
T 3c75_A           47 AVVVGIEKMKYLTPEVTIKAGETVYWV-NGEV-MPHN   81 (132)
T ss_dssp             SEEEEEETTEESSSEEEECTTCEEEEE-ECSS-SCBC
T ss_pred             cEEEEEeeeEEeCCEEEECCCCEEEEE-ECCC-CceE
Confidence            399999999999999999999999987 3332 3575

>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A

Probab=80.24  E-value=1.7  Score=26.95  Aligned_cols=28  Identities=14%  Similarity=0.063  Sum_probs=21.3

Q ss_pred             eecCCCeeeeccCceEEEEEeecCCCCcee
Q 033184           27 CYPKPGFLRITDKETLIVESNYSSSHDHTG   56 (125)
Q Consensus        27 CyP~Pgs~kI~dGE~L~l~s~Ys~~~~hTG   56 (125)
                      +...|..+++..|+++++.  +.+...|+=
T Consensus        14 ~~f~P~~i~v~~Gd~V~~~--n~~~~~H~v   41 (91)
T 1bxv_A           14 LAFEPSTIEIQAGDTVQWV--NNKLAPHNV   41 (91)
T ss_dssp             SSEESSEEEECTTCEEEEE--ECSSCCEEE
T ss_pred             cEEeCCEEEECCCCEEEEE--ECCCCCcEE
Confidence            6778999999999999986  333356753

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	125
d1id2a_	106	Amicyanin {Paracoccus versutus (Thiobacillus versu	83.22

>d1id2a_ b.6.1.1 (A:) Amicyanin {Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Amicyanin
species: Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]

Probab=83.22  E-value=0.72  Score=29.22  Aligned_cols=35  Identities=17%  Similarity=0.132  Sum_probs=28.0

Q ss_pred             ccEEEeeeeecCCCeeeeccCceEEEEEeecCCCCce
Q 033184           19 GYIVGMSTCYPKPGFLRITDKETLIVESNYSSSHDHT   55 (125)
Q Consensus        19 GYvVGMStCyP~Pgs~kI~dGE~L~l~s~Ys~~~~hT   55 (125)
                      -.+|++..|...|.+++|..|++++++-+  ...+|+
T Consensus        21 ~~~v~~~~~~F~P~~i~V~~GdtV~f~N~--d~~~H~   55 (106)
T d1id2a_          21 AVVVGIEKMKYLTPEVTIKAGETVYWVNG--EVMPHN   55 (106)
T ss_dssp             CEEEEEETTEESSSEEEECTTCEEEEEEC--SSSCBC
T ss_pred             ceEEecccCEEeCCEEEECCCCEEEEEEC--CCCcee
Confidence            36899999999999999999999988521  233565