Citrus Sinensis ID: 033198

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MAGKEEEPKTEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQHHPTS
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
magkeeepkteARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQHHPTS
Flexible Loop (DISEMBL)
magkeeepkteaRDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQHHPTS
Low Complexity Region (SEG)
MAGKEEEPKTEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQHHPTS
Disordered region (IsUnstruct)
************************************GTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLE*************
Disordered Region (DISOPRED)
******************SLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKM**********
Disordered Region (DISEMBL)
***************LAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQ*********
Disordered Region (DISPRO)
**********EARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQH****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAGKEEEPKTEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQHHPTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	125	2.2.26 [Sep-21-2011]
F4K657	127	Biogenesis of lysosome-re	yes	no	0.896	0.881	0.705	2e-41
Q54Y67	234	Biogenesis of lysosome-re	yes	no	0.896	0.478	0.330	4e-11
Q66KB9	147	Biogenesis of lysosome-re	yes	no	0.832	0.707	0.317	2e-08
Q32WR5	142	Biogenesis of lysosome-re	yes	no	0.832	0.732	0.298	8e-07
Q9CWG9	143	Biogenesis of lysosome-re	yes	no	0.832	0.727	0.298	9e-07
Q6QNY1	142	Biogenesis of lysosome-re	yes	no	0.832	0.732	0.298	9e-07
Q4R7C8	142	Biogenesis of lysosome-re	N/A	no	0.832	0.732	0.298	1e-06
A7RZS0	171	Biogenesis of lysosome-re	N/A	no	0.832	0.608	0.298	9e-06
Q95XD3	132	Biogenesis of lysosome-re	yes	no	0.832	0.787	0.280	4e-05
Q9VTE0	159	Biogenesis of lysosome-re	yes	no	0.784	0.616	0.285	0.0004

>sp|F4K657|BL1S2_ARATH Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Arabidopsis thaliana GN=BLOS2 PE=1 SV=1

 Score =  167 bits (422), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/112 (70%), Positives = 99/112 (88%)

Query: 10  TEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVF 69
            ++RD+LAESL +LFTSVS+MVKSELQGTNN L+LLEKMNLRVA EY   GDVAAGLRVF
Sbjct: 2   ADSRDDLAESLQNLFTSVSSMVKSELQGTNNHLDLLEKMNLRVASEYDDMGDVAAGLRVF 61

Query: 70  VEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQH 121
            EQ+K KSG  DE+V Q+D+IE+QV++FEAVIS+LD+YV+VLESK+++ Y+H
Sbjct: 62  AEQMKSKSGGLDEFVGQMDAIEKQVSEFEAVISVLDRYVSVLESKIRAEYRH 113

May mediate the vacuolar degradative transport via the intracellular vesicle trafficking from the endosome to the vacuole.
Arabidopsis thaliana (taxid: 3702)

>sp|Q54Y67|BL1S2_DICDI Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Dictyostelium discoideum GN=bloc1s2 PE=3 SV=2

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 63/112 (56%)

Query: 7   EPKTEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGL 66
           +P     ++L  S  ++FT VS+ +KSEL  T +   LL +MN   + +Y+   +V  GL
Sbjct: 69  KPILPVTEDLQNSTKEMFTKVSSYIKSELATTVSDYNLLIQMNNITSSKYQDMTNVTKGL 128

Query: 67  RVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118
            VF+  LK K   F  Y  +I+ +++ VT  E  + +LD+Y   LE K++++
Sbjct: 129 SVFMGDLKIKYEEFQPYFDKINELDKNVTDLEKTVQLLDEYTKRLEQKVKNI 180

May be involved in the biogenesis of specialized organelles of the endosomal-lysosomal system.

Dictyostelium discoideum (taxid: 44689)

>sp|Q66KB9|BL1S2_XENTR Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Xenopus tropicalis GN=bloc1s2 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 54/104 (51%)

Query: 15  ELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLK 74
           ++ E   D+F+ ++  +  EL  T+   +LLE MN   + +Y    D+A  +   ++ L 
Sbjct: 41  DINELCRDMFSKMALYLTGELTTTSEDYKLLENMNKLTSLKYMEMKDIAGNISRNLKDLN 100

Query: 75  KKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118
           KK  S   Y++QI+ IE+QV   E     LD Y   LE+K + L
Sbjct: 101 KKYASLQPYLEQINQIEEQVASLENAAYKLDAYSKRLEAKFKKL 144

May play a role in cell proliferation. May be involved in the biogenesis of specialized organelles of the endosomal-lysosomal system. May play a role in intracellular vesicle trafficking.

Xenopus tropicalis (taxid: 8364)

>sp|Q32WR5|BL1S2_RAT Biogenesis of lysosome-related organelles complex-1 subunit 2 OS=Rattus norvegicus GN=Bloc1s2 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%)

Query: 15  ELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLK 74
           ++ E   D+F+ ++  +  EL  T+   +LLE MN   + +Y    D+A  +   ++ L 
Sbjct: 36  DINELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLN 95

Query: 75  KKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118
           +K      Y+ QI+ IE+QV   E     LD Y   LE+K + L
Sbjct: 96  QKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKL 139

May play a role in cell proliferation. The BLOC-1 complex is required for normal biogenesis of lysosome-related organelles, such as platelet dense granules and melanosomes. Plays a role in intracellular vesicle trafficking (By similarity). May be a mediator in the mechanisms of neuropathic pain.

Rattus norvegicus (taxid: 10116)

>sp|Q9CWG9|BL1S2_MOUSE Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Mus musculus GN=Bloc1s2 PE=1 SV=1

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%)

Query: 15  ELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLK 74
           ++ E   D+F+ ++  +  EL  T+   +LLE MN   + +Y    D+A  +   ++ L 
Sbjct: 37  DINELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLN 96

Query: 75  KKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118
           +K      Y+ QI+ IE+QV   E     LD Y   LE+K + L
Sbjct: 97  QKYAELQPYLDQINMIEEQVAALEQAAYKLDAYSKKLEAKYKKL 140

May play a role in cell proliferation. The BLOC-1 complex is required for normal biogenesis of lysosome-related organelles, such as platelet dense granules and melanosomes. Plays a role in intracellular vesicle trafficking.

Mus musculus (taxid: 10090)

>sp|Q6QNY1|BL1S2_HUMAN Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Homo sapiens GN=BLOC1S2 PE=1 SV=1

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%)

Query: 15  ELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLK 74
           ++ E   D+F+ ++  +  EL  T+   +LLE MN   + +Y    D+A  +   ++ L 
Sbjct: 36  DITELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLN 95

Query: 75  KKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118
           +K      Y+ QI+ IE+QV   E     LD Y   LE+K + L
Sbjct: 96  QKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKL 139

May play a role in cell proliferation. The BLOC-1 complex is required for normal biogenesis of lysosome-related organelles, such as platelet dense granules and melanosomes. Plays a role in intracellular vesicle trafficking.

Homo sapiens (taxid: 9606)

>sp|Q4R7C8|BL1S2_MACFA Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Macaca fascicularis GN=BLOC1S2 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%)

Query: 15  ELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLK 74
           ++ E   D+F+ ++  +  EL  T+   +LLE MN   + +Y    D+A  +   ++ L 
Sbjct: 36  DITELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLN 95

Query: 75  KKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118
           +K      Y+ QI+ IE+QV   E     LD Y   LE+K + L
Sbjct: 96  QKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKL 139

May play a role in cell proliferation. The BLOC-1 complex is required for normal biogenesis of lysosome-related organelles, such as platelet dense granules and melanosomes. Plays a role in intracellular vesicle trafficking.

Macaca fascicularis (taxid: 9541)

>sp|A7RZS0|BL1S2_NEMVE Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Nematostella vectensis GN=bloc1s2 PE=3 SV=1

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 49/104 (47%)

Query: 15  ELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLK 74
           +L E+    F  ++  +  EL  +     LLE++N    ++YK    +   L   +E+L 
Sbjct: 65  DLKETCRVAFDKITQYLNGELTASLEDYTLLEQLNNLTTDKYKEMSTMTKSLITTMEKLD 124

Query: 75  KKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118
            K  S   Y++QID IE  V+  E     LD Y   LE+K + L
Sbjct: 125 DKYKSLQPYLEQIDRIEDSVSSLEQAAYRLDAYSKKLENKFKRL 168

May be involved in the biogenesis of specialized organelles of the endosomal-lysosomal system.

Nematostella vectensis (taxid: 45351)

>sp|Q95XD3|BL1S2_CAEEL Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Caenorhabditis elegans GN=blos-2 PE=1 SV=1

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 57/107 (53%), Gaps = 3/107 (2%)

Query: 15  ELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLK 74
           +LA+++ D    V    + +L+G+    +LLE MN   A+ Y     VA  +   ++ L 
Sbjct: 27  QLADNMTD---KVGQFFQHQLEGSIEEYKLLETMNNTTAQRYVDMKVVAEKVAGKLDNLN 83

Query: 75  KKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQH 121
           +K  +   Y+ QID++++   + E   ++L+ YV  LESK+ ++ Q 
Sbjct: 84  QKYENLRPYLSQIDAMDESTRRLEEATAVLENYVTQLESKLTNIQQQ 130

Component of the biogenesis of lysosome-related organelles complex-1 (BLOC-1) involved in gut granule biogenesis.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9VTE0|BL1S2_DROME Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Drosophila melanogaster GN=blos2 PE=1 SV=2

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 42/98 (42%)

Query: 23  LFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDE 82
           +F      +  EL       +LLE+MN     +YK    +A  L     +L  K      
Sbjct: 52  MFNKTEEYITHELNAPLEDYKLLEEMNKATIAKYKDMRQIAENLNTSTSELSLKFQQLAP 111

Query: 83  YVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ 120
            +QQID I   V + EA    LD Y   LE++++ + Q
Sbjct: 112 MMQQIDEISDTVDKLEAAAYKLDAYSIALENRVKCVLQ 149

Component of the biogenesis of lysosome-related organelles complex-1 (BLOC-1) involved in pigment granule biogenesis.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
225451862	121	PREDICTED: uncharacterized protein LOC10	0.96	0.991	0.821	3e-50
357458461	127	hypothetical protein MTR_3g034300 [Medic	0.976	0.960	0.747	1e-46
351722534	130	uncharacterized protein LOC100305617 [Gl	0.968	0.930	0.733	2e-46
356573751	130	PREDICTED: uncharacterized protein LOC10	0.96	0.923	0.731	1e-44
255579960	210	conserved hypothetical protein [Ricinus	0.888	0.528	0.774	7e-44
449438743	121	PREDICTED: biogenesis of lysosome-relate	0.968	1.0	0.699	1e-41
224127524	120	predicted protein [Populus trichocarpa]	0.888	0.925	0.752	2e-41
18423040	127	uncharacterized protein [Arabidopsis tha	0.896	0.881	0.705	1e-39
21592679	127	unknown [Arabidopsis thaliana]	0.896	0.881	0.696	1e-39
62318743	127	hypothetical protein [Arabidopsis thalia	0.896	0.881	0.696	6e-39

>gi|225451862|ref|XP_002282212.1| PREDICTED: uncharacterized protein LOC100263512 [Vitis vinifera] gi|147779652|emb|CAN71738.1| hypothetical protein VITISV_011558 [Vitis vinifera] gi|298204429|emb|CBI16909.3| unnamed protein product [Vitis vinifera]

 Score =  202 bits (513), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 101/123 (82%), Positives = 111/123 (90%), Gaps = 3/123 (2%)

Query: 1   MAGKEEEPKTEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFG 60
           MAGKEE    + RD LAESLNDLFTSVS MVK +LQGTNN LELLEKMNLRVAEEYKGFG
Sbjct: 1   MAGKEE---AKERDALAESLNDLFTSVSTMVKGQLQGTNNLLELLEKMNLRVAEEYKGFG 57

Query: 61  DVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ 120
           DVA+GLRVFVEQLK KSG+FDEYVQQID+IEQQVT+FEAVISMLDKYV++LESK+QS+YQ
Sbjct: 58  DVASGLRVFVEQLKAKSGNFDEYVQQIDAIEQQVTEFEAVISMLDKYVSLLESKLQSVYQ 117

Query: 121 HHP 123
             P
Sbjct: 118 TPP 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458461|ref|XP_003599511.1| hypothetical protein MTR_3g034300 [Medicago truncatula] gi|355488559|gb|AES69762.1| hypothetical protein MTR_3g034300 [Medicago truncatula]

 Score =  189 bits (481), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/123 (74%), Positives = 112/123 (91%), Gaps = 1/123 (0%)

Query: 4   KEEEPKTEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVA 63
           K++E + + RDELAESLNDLF+SV+ M+KSELQGTNN LELLEKMNLRVAEEY GFGD+A
Sbjct: 5   KKDEAQDQKRDELAESLNDLFSSVATMIKSELQGTNNHLELLEKMNLRVAEEYNGFGDLA 64

Query: 64  AGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ-HH 122
           +GLRVFVEQLK KSGSF+EYV+QID+IE+QVT+FEAV+SMLDKYV +LES++QS YQ  +
Sbjct: 65  SGLRVFVEQLKCKSGSFNEYVEQIDAIEKQVTEFEAVVSMLDKYVTLLESRVQSQYQTKN 124

Query: 123 PTS 125
           P+S
Sbjct: 125 PSS 127

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722534|ref|NP_001238015.1| uncharacterized protein LOC100305617 [Glycine max] gi|255626099|gb|ACU13394.1| unknown [Glycine max]

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 91/124 (73%), Positives = 112/124 (90%), Gaps = 3/124 (2%)

Query: 4   KEEEPKTEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVA 63
           K++EP+   +DELAESL+ LF+SVS M+KSELQGTNN LELLEKMN+RVAEEYKGFGD+A
Sbjct: 5   KKDEPQNRKQDELAESLDGLFSSVSTMIKSELQGTNNHLELLEKMNVRVAEEYKGFGDLA 64

Query: 64  AGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ--- 120
           +GLRVFVEQLK KSGSF+EYV+QIDSIE+QVT+FEAV+SMLDKY+ +LES++QS+YQ   
Sbjct: 65  SGLRVFVEQLKCKSGSFNEYVEQIDSIEKQVTEFEAVVSMLDKYIVLLESRVQSVYQTKI 124

Query: 121 HHPT 124
           H P+
Sbjct: 125 HLPS 128

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573751|ref|XP_003555020.1| PREDICTED: uncharacterized protein LOC100782608 [Glycine max]

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 90/123 (73%), Positives = 110/123 (89%), Gaps = 3/123 (2%)

Query: 4   KEEEPKTEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVA 63
           K++E +   +DELAESL+ LF+SVS M+KSELQGTNN LELLEKMN+RVAEEYKGFGD+A
Sbjct: 5   KKDETQDRKQDELAESLDGLFSSVSTMIKSELQGTNNHLELLEKMNVRVAEEYKGFGDLA 64

Query: 64  AGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ--- 120
           +GLRVFVEQLK KSGSF+EYV+QID+IE+QVT+FEAV+SMLDKYV +LES++QS+YQ   
Sbjct: 65  SGLRVFVEQLKCKSGSFNEYVEQIDNIEKQVTEFEAVVSMLDKYVVLLESRVQSVYQNKI 124

Query: 121 HHP 123
           H P
Sbjct: 125 HLP 127

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579960|ref|XP_002530815.1| conserved hypothetical protein [Ricinus communis] gi|223529636|gb|EEF31583.1| conserved hypothetical protein [Ricinus communis]

 Score =  181 bits (458), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 86/111 (77%), Positives = 103/111 (92%)

Query: 5   EEEPKTEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAA 64
           E++ + E +DELA+SLNDLF SVS MVK E+QGTNN L+LLEKMNLRVAEEYKGFGDVA+
Sbjct: 4   EKQKEVEVQDELADSLNDLFASVSTMVKGEIQGTNNLLDLLEKMNLRVAEEYKGFGDVAS 63

Query: 65  GLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKM 115
           GLRVFVEQL+ KSGSFDEYVQQID+IE+QVT+FEAVIS+LD+YV++LESK+
Sbjct: 64  GLRVFVEQLQSKSGSFDEYVQQIDTIERQVTEFEAVISVLDQYVSMLESKL 114

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438743|ref|XP_004137147.1| PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2-like [Cucumis sativus] gi|449476413|ref|XP_004154730.1| PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2-like [Cucumis sativus]

 Score =  173 bits (438), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 86/123 (69%), Positives = 105/123 (85%), Gaps = 2/123 (1%)

Query: 1   MAGKEEEPKTEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFG 60
           MA KEE  +   RD+LAESLN+ FTSVS M+KS+L G++N LELLE+MNLRVAEEYKGFG
Sbjct: 1   MAQKEE--RLPNRDDLAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFG 58

Query: 61  DVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ 120
           DVA+G+RVFVEQLK KSG FDEY+ QI+ IE QVT+FEAVISMLDK+V++LESK+ S+ Q
Sbjct: 59  DVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQ 118

Query: 121 HHP 123
           + P
Sbjct: 119 NTP 121

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127524|ref|XP_002329299.1| predicted protein [Populus trichocarpa] gi|222870753|gb|EEF07884.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (437), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/113 (75%), Positives = 103/113 (91%), Gaps = 2/113 (1%)

Query: 13  RDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQ 72
           +D LA+SLNDLFTSVS MVKSELQGT+N LELLEKMN+RV+EEYKGFGDVA+GLRV+VEQ
Sbjct: 4   QDNLADSLNDLFTSVSNMVKSELQGTSNQLELLEKMNVRVSEEYKGFGDVASGLRVYVEQ 63

Query: 73  LKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLY--QHHP 123
           LK KSG+F+EYV QI+ IE+QVT+FEAVIS+LDKYV++LESK++ +Y  Q HP
Sbjct: 64  LKGKSGNFEEYVHQIEEIEKQVTEFEAVISVLDKYVSLLESKVKFVYQQQQHP 116

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18423040|ref|NP_568711.1| uncharacterized protein [Arabidopsis thaliana] gi|363579829|sp|F4K657.1|BL1S2_ARATH RecName: Full=Biogenesis of lysosome-related organelles complex 1 subunit 2; Short=BLOC-1 subunit 2 gi|332008445|gb|AED95828.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/112 (70%), Positives = 99/112 (88%)

Query: 10  TEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVF 69
            ++RD+LAESL +LFTSVS+MVKSELQGTNN L+LLEKMNLRVA EY   GDVAAGLRVF
Sbjct: 2   ADSRDDLAESLQNLFTSVSSMVKSELQGTNNHLDLLEKMNLRVASEYDDMGDVAAGLRVF 61

Query: 70  VEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQH 121
            EQ+K KSG  DE+V Q+D+IE+QV++FEAVIS+LD+YV+VLESK+++ Y+H
Sbjct: 62  AEQMKSKSGGLDEFVGQMDAIEKQVSEFEAVISVLDRYVSVLESKIRAEYRH 113

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592679|gb|AAM64628.1| unknown [Arabidopsis thaliana]

 Score =  166 bits (420), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 78/112 (69%), Positives = 99/112 (88%)

Query: 10  TEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVF 69
            ++RD+LAESL +LFTSVS+MVKSELQGTNN L+LLEKMNLR+A EY   GDVAAGLRVF
Sbjct: 2   ADSRDDLAESLQNLFTSVSSMVKSELQGTNNHLDLLEKMNLRIASEYDDMGDVAAGLRVF 61

Query: 70  VEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQH 121
            EQ+K KSG  DE+V Q+D+IE+QV++FEAVIS+LD+YV+VLESK+++ Y+H
Sbjct: 62  AEQMKSKSGGLDEFVGQMDAIEKQVSEFEAVISVLDRYVSVLESKIRAEYRH 113

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62318743|dbj|BAD93768.1| hypothetical protein [Arabidopsis thaliana]

 Score =  164 bits (415), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 78/112 (69%), Positives = 98/112 (87%)

Query: 10  TEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVF 69
            ++RD+LAESL +LFTSVS+MVKSELQGTNN L+LLEKMNLRVA EY   GDVAAG RVF
Sbjct: 2   ADSRDDLAESLQNLFTSVSSMVKSELQGTNNHLDLLEKMNLRVASEYDDMGDVAAGPRVF 61

Query: 70  VEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQH 121
            EQ+K KSG  DE+V Q+D+IE+QV++FEAVIS+LD+YV+VLESK+++ Y+H
Sbjct: 62  AEQMKSKSGGLDEFVGQMDAIEKQVSEFEAVISVLDRYVSVLESKIRAEYRH 113

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
TAIR|locus:2157854	127	BLOS2 "AT5G49550" [Arabidopsis	0.888	0.874	0.711	1.5e-37
UNIPROTKB|Q6QNY1	142	BLOC1S2 "Biogenesis of lysosom	0.904	0.795	0.309	9.4e-11
UNIPROTKB|Q4R7C8	142	BLOC1S2 "Biogenesis of lysosom	0.904	0.795	0.309	9.4e-11
UNIPROTKB|F1N5K4	166	BLOC1S2 "Uncharacterized prote	0.904	0.680	0.309	1.5e-10
UNIPROTKB|F1S8V1	184	BLOC1S2 "Uncharacterized prote	0.904	0.614	0.309	1.5e-10
RGD|1306551	142	Bloc1s2 "biogenesis of lysosom	0.904	0.795	0.309	1.5e-10
UNIPROTKB|Q66KB9	147	bloc1s2 "Biogenesis of lysosom	0.904	0.768	0.309	2e-10
UNIPROTKB|E1BXG7	143	BLOC1S2 "Uncharacterized prote	0.816	0.713	0.303	2.2e-09
UNIPROTKB|Q95XD3	132	blos-2 "Biogenesis of lysosome	0.824	0.780	0.283	3.3e-08
FB|FBgn0036118	159	blos2 "BLOC-1 subunit 2" [Dros	0.912	0.716	0.271	2.9e-07

TAIR|locus:2157854 BLOS2 "AT5G49550" [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 79/111 (71%), Positives = 99/111 (89%)

Query:    11 EARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFV 70
             ++RD+LAESL +LFTSVS+MVKSELQGTNN L+LLEKMNLRVA EY   GDVAAGLRVF 
Sbjct:     3 DSRDDLAESLQNLFTSVSSMVKSELQGTNNHLDLLEKMNLRVASEYDDMGDVAAGLRVFA 62

Query:    71 EQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQH 121
             EQ+K KSG  DE+V Q+D+IE+QV++FEAVIS+LD+YV+VLESK+++ Y+H
Sbjct:    63 EQMKSKSGGLDEFVGQMDAIEKQVSEFEAVISVLDRYVSVLESKIRAEYRH 113

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010048 "vernalization response" evidence=RCA

UNIPROTKB|Q6QNY1 BLOC1S2 "Biogenesis of lysosome-related organelles complex 1 subunit 2" [Homo sapiens (taxid:9606)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 35/113 (30%), Positives = 56/113 (49%)

Query:     6 EEPKTEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAG 65
             EE K  A  ++ E   D+F+ ++  +  EL  T+   +LLE MN   + +Y    D+A  
Sbjct:    27 EEAKEPAEADITELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAIN 86

Query:    66 LRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118
             +   ++ L +K      Y+ QI+ IE+QV   E     LD Y   LE+K + L
Sbjct:    87 ISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKL 139

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005813 "centrosome" evidence=IEA;IDA

GO:0008022 "protein C-terminus binding" evidence=IEA;IPI

GO:0055037 "recycling endosome" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IBA

GO:0000930 "gamma-tubulin complex" evidence=IDA

GO:0043015 "gamma-tubulin binding" evidence=IDA

GO:0008284 "positive regulation of cell proliferation" evidence=IDA

GO:0042981 "regulation of apoptotic process" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0031083 "BLOC-1 complex" evidence=IDA

GO:0032438 "melanosome organization" evidence=NAS

GO:0060155 "platelet dense granule organization" evidence=NAS

GO:0007020 "microtubule nucleation" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0031175 "neuron projection development" evidence=ISS

GO:0008089 "anterograde axon cargo transport" evidence=ISS

GO:0048490 "anterograde synaptic vesicle transport" evidence=ISS

UNIPROTKB|Q4R7C8 BLOC1S2 "Biogenesis of lysosome-related organelles complex 1 subunit 2" [Macaca fascicularis (taxid:9541)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 35/113 (30%), Positives = 56/113 (49%)

Query:     6 EEPKTEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAG 65
             EE K  A  ++ E   D+F+ ++  +  EL  T+   +LLE MN   + +Y    D+A  
Sbjct:    27 EEAKEPAEADITELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAIN 86

Query:    66 LRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118
             +   ++ L +K      Y+ QI+ IE+QV   E     LD Y   LE+K + L
Sbjct:    87 ISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKL 139

GO:0008089 "anterograde axon cargo transport" evidence=ISS

GO:0031083 "BLOC-1 complex" evidence=ISS

GO:0031175 "neuron projection development" evidence=ISS

GO:0048490 "anterograde synaptic vesicle transport" evidence=ISS

UNIPROTKB|F1N5K4 BLOC1S2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 35/113 (30%), Positives = 56/113 (49%)

Query:     6 EEPKTEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAG 65
             EE K  A  ++ E   D+F+ ++  +  EL  T+   +LLE MN   + +Y    D+A  
Sbjct:    51 EEAKEPAEADINELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAIN 110

Query:    66 LRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118
             +   ++ L +K      Y+ QI+ IE+QV   E     LD Y   LE+K + L
Sbjct:   111 ISRNLKDLNQKYAGLQPYLDQINIIEEQVAALEQAAYKLDAYSKKLEAKYKKL 163

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0043015 "gamma-tubulin binding" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0031083 "BLOC-1 complex" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0000930 "gamma-tubulin complex" evidence=IEA

UNIPROTKB|F1S8V1 BLOC1S2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 35/113 (30%), Positives = 56/113 (49%)

Query:     6 EEPKTEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAG 65
             EE K  A  ++ E   D+F+ ++  +  EL  T+   +LLE MN   + +Y    D+A  
Sbjct:    69 EEAKEPAEADINELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAIN 128

Query:    66 LRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118
             +   ++ L +K      Y+ QI+ IE+QV   E     LD Y   LE+K + L
Sbjct:   129 ISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKL 181

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0043015 "gamma-tubulin binding" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0031083 "BLOC-1 complex" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0000930 "gamma-tubulin complex" evidence=IEA

RGD|1306551 Bloc1s2 "biogenesis of lysosomal organelles complex-1, subunit 2" [Rattus norvegicus (taxid:10116)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 35/113 (30%), Positives = 56/113 (49%)

Query:     6 EEPKTEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAG 65
             EE K  A  ++ E   D+F+ ++  +  EL  T+   +LLE MN   + +Y    D+A  
Sbjct:    27 EEAKEPAEADINELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAIN 86

Query:    66 LRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118
             +   ++ L +K      Y+ QI+ IE+QV   E     LD Y   LE+K + L
Sbjct:    87 ISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKL 139

GO:0000930 "gamma-tubulin complex" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=ISO

GO:0008022 "protein C-terminus binding" evidence=ISO;IPI

GO:0008089 "anterograde axon cargo transport" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=IEA;ISO

GO:0031083 "BLOC-1 complex" evidence=ISO;ISS;IBA

GO:0031175 "neuron projection development" evidence=ISS

GO:0042981 "regulation of apoptotic process" evidence=IEA;ISO

GO:0043015 "gamma-tubulin binding" evidence=IEA;ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0048490 "anterograde synaptic vesicle transport" evidence=ISS

GO:0055037 "recycling endosome" evidence=IDA

UNIPROTKB|Q66KB9 bloc1s2 "Biogenesis of lysosome-related organelles complex 1 subunit 2" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 35/113 (30%), Positives = 56/113 (49%)

Query:     6 EEPKTEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAG 65
             EE       ++ E   D+F+ ++  +  EL  T+   +LLE MN   + +Y    D+A  
Sbjct:    32 EEAVEPPEADINELCRDMFSKMALYLTGELTTTSEDYKLLENMNKLTSLKYMEMKDIAGN 91

Query:    66 LRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118
             +   ++ L KK  S   Y++QI+ IE+QV   E     LD Y   LE+K + L
Sbjct:    92 ISRNLKDLNKKYASLQPYLEQINQIEEQVASLENAAYKLDAYSKRLEAKFKKL 144

GO:0005634 "nucleus" evidence=ISS

GO:0005813 "centrosome" evidence=ISS

GO:0008089 "anterograde axon cargo transport" evidence=ISS

GO:0031083 "BLOC-1 complex" evidence=ISS

GO:0031175 "neuron projection development" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0048490 "anterograde synaptic vesicle transport" evidence=ISS

UNIPROTKB|E1BXG7 BLOC1S2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 31/102 (30%), Positives = 52/102 (50%)

Query:     6 EEPKTEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAG 65
             EE K  A  ++ E   D+F+ ++  +  EL  T+   +LLE MN   + +Y    D+A  
Sbjct:    26 EEAKEPAEADINELCKDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAIN 85

Query:    66 LRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKY 107
             +   ++ L +K  +   Y++QI+ IE+QV   E     LD Y
Sbjct:    86 ISRNLKDLNQKYAALQPYLEQINLIEEQVAALEQAAYKLDAY 127

GO:0000930 "gamma-tubulin complex" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0031083 "BLOC-1 complex" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0043015 "gamma-tubulin binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q95XD3 blos-2 "Biogenesis of lysosome-related organelles complex 1 subunit 2" [Caenorhabditis elegans (taxid:6239)]

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 30/106 (28%), Positives = 57/106 (53%)

Query:    15 ELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLK 74
             +LA+++ D    V    + +L+G+    +LLE MN   A+ Y     VA  +   ++ L 
Sbjct:    27 QLADNMTD---KVGQFFQHQLEGSIEEYKLLETMNNTTAQRYVDMKVVAEKVAGKLDNLN 83

Query:    75 KKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ 120
             +K  +   Y+ QID++++   + E   ++L+ YV  LESK+ ++ Q
Sbjct:    84 QKYENLRPYLSQIDAMDESTRRLEEATAVLENYVTQLESKLTNIQQ 129

GO:0016197 "endosomal transport" evidence=IMP

GO:0031083 "BLOC-1 complex" evidence=TAS

FB|FBgn0036118 blos2 "BLOC-1 subunit 2" [Drosophila melanogaster (taxid:7227)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 31/114 (27%), Positives = 46/114 (40%)

Query:     7 EPKTEARDELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGL 66
             E  T     L+     +F      +  EL       +LLE+MN     +YK    +A  L
Sbjct:    36 EALTRHDPNLSRLATKMFNKTEEYITHELNAPLEDYKLLEEMNKATIAKYKDMRQIAENL 95

Query:    67 RVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ 120
                  +L  K       +QQID I   V + EA    LD Y   LE++++ + Q
Sbjct:    96 NTSTSELSLKFQQLAPMMQQIDEISDTVDKLEAAAYKLDAYSIALENRVKCVLQ 149


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.126   0.325    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      125       125   0.00091  102 3  10 23  0.44    31
                                                     29  0.39    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  547 (58 KB)
  Total size of DFA:  139 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  23.14u 0.08s 23.22t   Elapsed:  00:00:02
  Total cpu time:  23.14u 0.08s 23.22t   Elapsed:  00:00:03
  Start:  Fri May 10 18:08:51 2013   End:  Fri May 10 18:08:54 2013

GO:0031083 "BLOC-1 complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4K657	BL1S2_ARATH	No assigned EC number	0.7053	0.896	0.8818	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	125
pfam10046	99	pfam10046, BLOC1_2, Biogenesis of lysosome-related	5e-28

>gnl|CDD|163611 pfam10046, BLOC1_2, Biogenesis of lysosome-related organelles complex-1 subunit 2

 Score = 98.1 bits (245), Expect = 5e-28
 Identities = 44/99 (44%), Positives = 60/99 (60%)

Query: 20  LNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGS 79
              +F  +S  V++EL+ +   L+LLEKMN   A +YK     A GLRV +E L +K   
Sbjct: 1   AEKMFNKISKYVEAELEISVEDLKLLEKMNENTALKYKKMRQSAKGLRVEIEALNQKYEE 60

Query: 80  FDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL 118
              Y+QQID+IEQQVT  E  +  LD+Y   LESK++SL
Sbjct: 61  LKPYLQQIDAIEQQVTTLEEAVYELDEYSKELESKVKSL 99

Members of this family of proteins play a role in cellular proliferation, as well as in the biogenesis of specialized organelles of the endosomal-lysosomal system. Length = 99

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
PF10046	99	BLOC1_2: Biogenesis of lysosome-related organelles	100.0
KOG4559	120	consensus Uncharacterized conserved protein [Funct	99.95
PF10157	149	DUF2365: Uncharacterized conserved protein (DUF236	95.25
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	90.87
PRK10698	222	phage shock protein PspA; Provisional	90.35
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	86.77
PF06103	90	DUF948: Bacterial protein of unknown function (DUF	86.5
PF09403	126	FadA: Adhesion protein FadA; InterPro: IPR018543 F	85.92
PF06825	54	HSBP1: Heat shock factor binding protein 1; InterP	85.04
PF10398	79	DUF2443: Protein of unknown function (DUF2443); In	84.65
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	84.37
PRK15365	107	type III secretion system chaperone SseA; Provisio	83.38
PF13094	160	CENP-Q: CENP-Q, a CENPA-CAD centromere complex sub	83.02
PF15358	558	TSKS: Testis-specific serine kinase substrate	81.76
PF10779	71	XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly	81.64
PRK11637	428	AmiB activator; Provisional	81.56
PF04912	388	Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamit	80.47
PF02994	370	Transposase_22: L1 transposable element; InterPro:	80.4
TIGR02132	189	phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR	80.04

>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system []

Probab=100.00  E-value=8e-37  Score=215.28  Aligned_cols=99  Identities=43%  Similarity=0.625  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 033198           20 LNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEA   99 (125)
Q Consensus        20 ~~~~f~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~   99 (125)
                      |++||++++.||+||+++|.+||+|||+||++++.||.+|+++++++++++++|+++|++|+||+++||+||++|++||+
T Consensus         1 ~~~~f~~~~~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~   80 (99)
T PF10046_consen    1 AERMFSKVSKYVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQ   80 (99)
T ss_pred             ChhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 033198          100 VISMLDKYVAVLESKMQSL  118 (125)
Q Consensus       100 ~a~~LD~ysk~LE~K~k~l  118 (125)
                      +|++||+||++||+|||++
T Consensus        81 ~v~~LD~ysk~LE~k~k~l   99 (99)
T PF10046_consen   81 TVYELDEYSKELESKFKKL   99 (99)
T ss_pred             HHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999975

>KOG4559 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.95  E-value=8.2e-28  Score=172.07  Aligned_cols=94  Identities=27%  Similarity=0.428  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 033198           15 ELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQV   94 (125)
Q Consensus        15 ~L~~l~~~~f~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V   94 (125)
                      .|++|+..||.|+..|+++||++..+||+|||.||++++.||.+|+++|..+...+..|++||+.|.||++|||.|++++
T Consensus        26 hirqLAdkM~dKt~ef~qHeLe~~iEdYKLLEeMNkaTaakY~DMk~iAEkla~k~deLn~KfenL~P~lqQIDaiddst  105 (120)
T KOG4559|consen   26 HIRQLADKMFDKTEEFFQHELEAPIEDYKLLEEMNKATAAKYKDMKQIAEKLAGKLDELNLKFENLAPMLQQIDAIDDST  105 (120)
T ss_pred             cHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 033198           95 TQFEAVISMLDKYV  108 (125)
Q Consensus        95 ~~LE~~a~~LD~ys  108 (125)
                      ++||+++++||.|+
T Consensus       106 ~kLEaAa~~Ld~Y~  119 (120)
T KOG4559|consen  106 DKLEAAAAKLDAYS  119 (120)
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999999997

>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function

Probab=95.25  E-value=0.96  Score=34.33  Aligned_cols=87  Identities=18%  Similarity=0.186  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 033198           14 DELAESLNDLFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQ   93 (125)
Q Consensus        14 d~L~~l~~~~f~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~   93 (125)
                      ..++.....++.++..-+.+=...|.+.++....-...+-.--..--...-.+=..+++|++....+...-+||.+|...
T Consensus        62 ~~ia~svd~ll~~L~~~L~~mS~~Tv~~~~~y~~sv~~~cdsvD~sik~~y~liakceELn~~M~~v~~La~qIK~Ik~~  141 (149)
T PF10157_consen   62 QAIAESVDSLLRSLRSSLHSMSAITVEHMETYKDSVDKLCDSVDASIKSMYTLIAKCEELNESMKPVYKLAQQIKDIKKL  141 (149)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36777888888888888888777777777766665554444332222233334466777777777777888888888888


Q ss_pred             HHHHHHH
Q 033198           94 VTQFEAV  100 (125)
Q Consensus        94 V~~LE~~  100 (125)
                      |+.||.+
T Consensus       142 lD~lE~~  148 (149)
T PF10157_consen  142 LDLLESL  148 (149)
T ss_pred             HHHHHhc
Confidence            8888764

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=90.87  E-value=6.2  Score=30.47  Aligned_cols=98  Identities=22%  Similarity=0.317  Sum_probs=48.1

Q ss_pred             HHHHHHHHHhhhhhhhhhHH----HHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhh------------------
Q 033198           23 LFTSVSAMVKSELQGTNNTL----ELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSF------------------   80 (125)
Q Consensus        23 ~f~~vs~yl~~El~~t~~d~----~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l------------------   80 (125)
                      +|+.+..+|.|.++...+.+    .+|+..=+-+...+.+.+..+..+...-..++.++...                  
T Consensus         2 lf~Rl~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g   81 (221)
T PF04012_consen    2 LFKRLKTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAG   81 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            45555555555555444433    44444444444444444444444444444444443332                  


Q ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198           81 ------------DEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ  120 (125)
Q Consensus        81 ------------~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~  120 (125)
                                  ..|-.++..++.++..++..+..|..-...|+.|+..+.+
T Consensus        82 ~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~  133 (221)
T PF04012_consen   82 REDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKS  133 (221)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        2333444445555555555555555555566666665554

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PRK10698 phage shock protein PspA; Provisional

Probab=90.35  E-value=7.7  Score=30.75  Aligned_cols=39  Identities=21%  Similarity=0.350  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 033198           83 YVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQH  121 (125)
Q Consensus        83 yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~  121 (125)
                      |-.+|..++.++...+..+..|-.-..+|+.|+..+...
T Consensus        97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k  135 (222)
T PRK10698         97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRAR  135 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677888888888888888888888888999888877654

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=86.77  E-value=15  Score=35.29  Aligned_cols=86  Identities=21%  Similarity=0.283  Sum_probs=66.8

Q ss_pred             hhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 033198           32 KSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEY----VQQIDSIEQQVTQFEAVISMLDKY  107 (125)
Q Consensus        32 ~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~y----l~qID~Ie~~V~~LE~~a~~LD~y  107 (125)
                      +++++.+..-++=+++++...-.+|.+++..-..++..=.+|-.||.....-    -+-||+.++....|...+-+++.-
T Consensus       402 r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~  481 (980)
T KOG0980|consen  402 RTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRA  481 (980)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            3555666666788899999999999999999999999988888888875443    456778888888888877777777


Q ss_pred             HHHHHHHHHh
Q 033198          108 VAVLESKMQS  117 (125)
Q Consensus       108 sk~LE~K~k~  117 (125)
                      ..++|.|...
T Consensus       482 ~~~~~~K~e~  491 (980)
T KOG0980|consen  482 AGRAETKTES  491 (980)
T ss_pred             HHHHHHhhHH
Confidence            7776666543

>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins

Probab=86.50  E-value=7.7  Score=26.02  Aligned_cols=50  Identities=14%  Similarity=0.250  Sum_probs=34.3

Q ss_pred             hHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 033198           49 NLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFE   98 (125)
Q Consensus        49 N~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE   98 (125)
                      ......==.+..+.......-.++.+.|-+.++|.++.+.++.+.|..|.
T Consensus        39 ~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~   88 (90)
T PF06103_consen   39 QEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELN   88 (90)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence            33333333555666666667777777888888888888888888877764

>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices

Probab=85.92  E-value=12  Score=27.66  Aligned_cols=89  Identities=16%  Similarity=0.227  Sum_probs=65.5

Q ss_pred             HHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 033198           29 AMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQ---VTQFEAVISMLD  105 (125)
Q Consensus        29 ~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~---V~~LE~~a~~LD  105 (125)
                      .=|.+++..-..+|+-|+++   -..+|...+..+..+...+..+...|.+...-+..|-+..+-   =.+.-.++.+-+
T Consensus        23 ~~v~~~l~~LEae~q~L~~k---E~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~   99 (126)
T PF09403_consen   23 ASVESELNQLEAEYQQLEQK---EEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYK   99 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            55677788888888877665   567899999999999999999999999888777777655332   145556666777


Q ss_pred             HHHHHHHHHHHhhhh
Q 033198          106 KYVAVLESKMQSLYQ  120 (125)
Q Consensus       106 ~ysk~LE~K~k~l~~  120 (125)
                      .+-+.|+.+++.-++
T Consensus       100 ~~~~~L~k~I~~~e~  114 (126)
T PF09403_consen  100 DLLNKLDKEIAEQEQ  114 (126)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777777766665443

; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.

>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response []

Probab=85.04  E-value=3.6  Score=26.30  Aligned_cols=44  Identities=20%  Similarity=0.414  Sum_probs=30.3

Q ss_pred             HHHHhHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHH
Q 033198           61 DVAAGLRVFVEQLKKKSGSF-DEYVQQIDSIEQQVTQFEAVISML  104 (125)
Q Consensus        61 ~~a~~l~~~~~~Ln~ky~~l-~~yl~qID~Ie~~V~~LE~~a~~L  104 (125)
                      +.+.-+..-+++++.|+..+ ...+.+||+...+|..||..+..|
T Consensus         3 elt~~v~~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl   47 (54)
T PF06825_consen    3 ELTAFVQNLLQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADL   47 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            34445566677777777774 456788999999999998887665

; PDB: 3CI9_A.

>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species

Probab=84.65  E-value=5.1  Score=27.48  Aligned_cols=76  Identities=16%  Similarity=0.307  Sum_probs=54.1

Q ss_pred             HHHHHHHHHhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 033198           23 LFTSVSAMVKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVIS  102 (125)
Q Consensus        23 ~f~~vs~yl~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~  102 (125)
                      ||.++-..+. ..+.+.++.++|=+|-+..-.-|.-++.-.-++-..+.            +.-.-+|+++|++|-+.++
T Consensus         1 MFEkid~I~k-~IE~~~~eIe~LL~~AkiSl~DyImiKRGS~DmPe~l~------------~~~~~QideeV~~LKe~Id   67 (79)
T PF10398_consen    1 MFEKIDLILK-NIENAQEEIEILLKIAKISLVDYIMIKRGSQDMPEHLN------------MAFLAQIDEEVEKLKEHID   67 (79)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHHHHHHT--HHHHHHHHTTSS---TTS-------------HHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHH-HHHHHHHHHHHHHHHhhccHHHHHHhcccCCcCccccc------------HHHHHHHHHHHHHHHHHHH
Confidence            6777776664 57888999999999999999999988876655543332            1224467789999999999


Q ss_pred             HHHHHHHHH
Q 033198          103 MLDKYVAVL  111 (125)
Q Consensus       103 ~LD~ysk~L  111 (125)
                      .|..|-+++
T Consensus        68 aLNK~KkE~   76 (79)
T PF10398_consen   68 ALNKIKKEL   76 (79)
T ss_dssp             HHHHHHGGG
T ss_pred             HHHHHHHHH
Confidence            999887653

The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.37  E-value=20  Score=28.89  Aligned_cols=70  Identities=16%  Similarity=0.250  Sum_probs=46.7

Q ss_pred             HHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198           50 LRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLY  119 (125)
Q Consensus        50 ~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~  119 (125)
                      ......-..+.+...-|....+..+.+-.+-..++..|.+|...+..||.++.....=-.+....+..++
T Consensus        18 ~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~   87 (230)
T PF10146_consen   18 NEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLY   87 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444445555555666666777788999999999999999999887766666655555444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PRK15365 type III secretion system chaperone SseA; Provisional

Probab=83.38  E-value=12  Score=27.06  Aligned_cols=26  Identities=12%  Similarity=0.226  Sum_probs=21.3

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHH
Q 033198           69 FVEQLKKKSGSFDEYVQQIDSIEQQV   94 (125)
Q Consensus        69 ~~~~Ln~ky~~l~~yl~qID~Ie~~V   94 (125)
                      .+.+|+++|..|..++..+-+|..+|
T Consensus        10 ~l~DL~~rYs~L~s~lkKfkq~q~~I   35 (107)
T PRK15365         10 EYRDLEQSYMQLNHCLKKFHQIRAKV   35 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46678888888888888888888888

>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit

Probab=83.02  E-value=13  Score=27.57  Aligned_cols=43  Identities=16%  Similarity=0.309  Sum_probs=36.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198           78 GSFDEYVQQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSLYQ  120 (125)
Q Consensus        78 ~~l~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~  120 (125)
                      ..|.+-+.+|+.+++.+.+.|.....--.|..+||.+.+.+.+
T Consensus        34 ~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~   76 (160)
T PF13094_consen   34 RQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALER   76 (160)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4466888899999999999999999999999999988887765

>PF15358 TSKS: Testis-specific serine kinase substrate

Probab=81.76  E-value=14  Score=33.04  Aligned_cols=74  Identities=20%  Similarity=0.308  Sum_probs=62.0

Q ss_pred             hHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 033198           49 NLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQID----SIEQQVTQFEAVISMLDKYVAVLESKMQSLYQHH  122 (125)
Q Consensus        49 N~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID----~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~~~~  122 (125)
                      -..+..+...+...-+.+..+++.=-|-.++|+.|..|+.    .+..+|..-|.-++.|-+-|-.||.|++-||+|-
T Consensus       134 t~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~lq~qL  211 (558)
T PF15358_consen  134 TSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRYLQQQL  211 (558)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHHHHHHHh
Confidence            3445567777778888888888888888889999988875    4788888999999999999999999999999874

>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes []

Probab=81.64  E-value=7.6  Score=25.38  Aligned_cols=34  Identities=15%  Similarity=0.329  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033198           85 QQIDSIEQQVTQFEAVISMLDKYVAVLESKMQSL  118 (125)
Q Consensus        85 ~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l  118 (125)
                      ..+|.+++.++.||..-..+|.-.+.+..+++++
T Consensus        13 ~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I   46 (71)
T PF10779_consen   13 TKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKI   46 (71)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555555555555555555555444

>PRK11637 AmiB activator; Provisional

Probab=81.56  E-value=32  Score=29.30  Aligned_cols=33  Identities=12%  Similarity=0.144  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198           87 IDSIEQQVTQFEAVISMLDKYVAVLESKMQSLY  119 (125)
Q Consensus        87 ID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~  119 (125)
                      ++.++.+....++.+.+|..-.++|+..++++.
T Consensus       221 l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~  253 (428)
T PRK11637        221 LTGLESSLQKDQQQLSELRANESRLRDSIARAE  253 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555666666666666666666666666666554

>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []

Probab=80.47  E-value=24  Score=29.88  Aligned_cols=23  Identities=26%  Similarity=0.463  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhh
Q 033198           97 FEAVISMLDKYVAVLESKMQSLY  119 (125)
Q Consensus        97 LE~~a~~LD~ysk~LE~K~k~l~  119 (125)
                      |.+-...+..|.+.||.|+..|+
T Consensus       366 ~~~N~~~i~~n~~~le~Ri~~L~  388 (388)
T PF04912_consen  366 FKENMETIEKNVKKLEERIAKLQ  388 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccC
Confidence            55556667777788888777663

It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex

>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition

Probab=80.40  E-value=7.1  Score=33.24  Aligned_cols=37  Identities=30%  Similarity=0.533  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhc
Q 033198           85 QQIDSIEQQVTQFEAV-------ISMLDKYVAVLESKMQSLYQH  121 (125)
Q Consensus        85 ~qID~Ie~~V~~LE~~-------a~~LD~ysk~LE~K~k~l~~~  121 (125)
                      ..|+++|+.|+.||.-       +..+....+.|+.++..+++.
T Consensus       144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnr  187 (370)
T PF02994_consen  144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENR  187 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            4455555555555544       444555555566666665543

Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.

>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit

Probab=80.04  E-value=11  Score=29.77  Aligned_cols=64  Identities=20%  Similarity=0.283  Sum_probs=43.9

Q ss_pred             HHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 033198           43 ELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQ----QIDSIEQQVTQFEAVISMLDK  106 (125)
Q Consensus        43 ~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~----qID~Ie~~V~~LE~~a~~LD~  106 (125)
                      +.|++||--+..--..+...+.+|+..+..+...+..+-.++.    |=-.....|++||+=+..||.
T Consensus        61 kYLe~lNlPSr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~  128 (189)
T TIGR02132        61 NYLEQVNVPTKEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDK  128 (189)
T ss_pred             HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHH
Confidence            3567777766666677778888888888888777666555555    555666677777766655543

This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	125
2avr_X	119	Adhesion A; antiparallel helix-loop-helix, leucine	91.39
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	88.72
2ieq_A	109	S glycoprotein, spike glycoprotein, peplomer prote	88.62
3etw_A	119	Adhesin A; antiparallel helix-loop-helix, leucine	84.94
4dac_A	28	Computationally designed crystal forming protein;	83.6
2l5g_B	42	Putative uncharacterized protein NCOR2, G protein	83.46
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	82.33
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	80.59
3ci9_A	48	Heat shock factor-binding protein 1; triple helix,	80.02

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=88.72  E-value=11  Score=32.31  Aligned_cols=68  Identities=13%  Similarity=0.172  Sum_probs=48.1

Q ss_pred             HHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033198           52 VAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDS--IEQQVTQFEAVISMLDKYVAVLESKMQSLY  119 (125)
Q Consensus        52 ~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~--Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l~  119 (125)
                      ....|........+....+++....++..+.|++.+..  +..++..|+..+..|..-...||.++..+.
T Consensus       126 Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~~~  195 (464)
T 1m1j_B          126 IDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQT  195 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566555666666677777777777777766654  678888888888888888888888887543

>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}

Probab=88.62  E-value=1.5  Score=30.95  Aligned_cols=63  Identities=11%  Similarity=0.135  Sum_probs=46.7

Q ss_pred             HHHHHHhhHHHHHHhHHHHHHHHHHHHh--------hhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198           51 RVAEEYKGFGDVAAGLRVFVEQLKKKSG--------SFD--------EYVQQIDSIEQQVTQFEAVISMLDKYVAVLES  113 (125)
Q Consensus        51 ~~s~kY~~m~~~a~~l~~~~~~Ln~ky~--------~l~--------~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~  113 (125)
                      .++.-|.++.+++++..+.+.+|=++|.        .++        .....||++|.+...|-.++.+|-.|.-.|-.
T Consensus        26 tv~~Al~kiQdVVN~q~~aLs~ll~QLn~NF~A~s~~lq~~fn~t~lni~~elD~LEa~A~~l~~~~~elq~~idn~n~  104 (109)
T 2ieq_A           26 TVTIALNKIQDVVNQQGSALNHLTSQLRHNFQSGGRGSGRGGNLTYLNLSSELKQLEAKTASLFQTTVELQGLIDQINS  104 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4566788888888888887777766554        233        44568999999999999999999998876643

>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A

Probab=84.94  E-value=8.4  Score=27.31  Aligned_cols=84  Identities=12%  Similarity=0.197  Sum_probs=67.2

Q ss_pred             HhhhhhhhhhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHH----------HHHHHHHHHHH
Q 033198           31 VKSELQGTNNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQIDS----------IEQQVTQFEAV  100 (125)
Q Consensus        31 l~~El~~t~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qID~----------Ie~~V~~LE~~  100 (125)
                      |.++++.....|..|.+|=   ..+|.+-+..|..-...+....+.|+.+..-+..|-.          ....|.+++.+
T Consensus         7 i~~~l~~Leae~q~L~~~E---~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~   83 (119)
T 3etw_A            7 LVGELQALDAEYQNLANQE---EARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDA   83 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence            5677778888888888864   5789999999999999999999999999888888854          45667777777


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 033198          101 ISMLDKYVAVLESKMQS  117 (125)
Q Consensus       101 a~~LD~ysk~LE~K~k~  117 (125)
                      ...||.-.+..+..+..
T Consensus        84 ~keLd~~ik~qekiIdn  100 (119)
T 3etw_A           84 LKKLEAEMEQQKAVISD  100 (119)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77777777777765543

>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}

Probab=83.60  E-value=1.2  Score=23.78  Aligned_cols=19  Identities=32%  Similarity=0.328  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q 033198          101 ISMLDKYVAVLESKMQSLY  119 (125)
Q Consensus       101 a~~LD~ysk~LE~K~k~l~  119 (125)
                      ||+||.-+|+||..+-+++
T Consensus         3 vykldanvkrlekevgkle   21 (28)
T 4dac_A            3 VYKLDANVKRLEKEVGKLE   21 (28)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             eeeccccHHHHHHHHhhhh
Confidence            6778888888887777665

>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}

Probab=83.46  E-value=4  Score=24.15  Aligned_cols=33  Identities=33%  Similarity=0.510  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198           81 DEYVQQIDSIEQQVTQFEAVISMLDKYVAVLES  113 (125)
Q Consensus        81 ~~yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~  113 (125)
                      +..+++||-|+..+++-|+-+.+|-.--+.||.
T Consensus         5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee   37 (42)
T 2l5g_B            5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEE   37 (42)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357899999999999999988888887777774

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=82.33  E-value=26  Score=32.56  Aligned_cols=74  Identities=16%  Similarity=0.212  Sum_probs=30.3

Q ss_pred             hhHHHHHHHHhHHHHHHHhhHHHHHHhHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198           39 NNTLELLEKMNLRVAEEYKGFGDVAAGLRVFVEQLKKKSGSFDEYVQQI-DSIEQQVTQFEAVISMLDKYVAVLE  112 (125)
Q Consensus        39 ~~d~~LLe~mN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~~yl~qI-D~Ie~~V~~LE~~a~~LD~ysk~LE  112 (125)
                      .++++.++.=+...-.+-..+......++..+..+...++.++.-.++. ++++++|..|++....|.+-...||
T Consensus       969 l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A          969 VERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444433333333322221 2333444444444444444333333

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=80.59  E-value=3.1  Score=24.63  Aligned_cols=27  Identities=19%  Similarity=0.358  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 033198           94 VTQFEAVISMLDKYVAVLESKMQSLYQ  120 (125)
Q Consensus        94 V~~LE~~a~~LD~ysk~LE~K~k~l~~  120 (125)
                      |+.||.-|..|+.--.+||.|+.-|++
T Consensus         5 l~eLE~r~k~le~~naeLEervstLq~   31 (42)
T 2oqq_A            5 LSELENRVKDLENKNSELEERLSTLQN   31 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555666555554

>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}

Probab=80.02  E-value=3.6  Score=24.83  Aligned_cols=42  Identities=19%  Similarity=0.445  Sum_probs=28.2

Q ss_pred             HHHHHhHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHH
Q 033198           60 GDVAAGLRVFVEQLKKKSGSF-DEYVQQIDSIEQQVTQFEAVI  101 (125)
Q Consensus        60 ~~~a~~l~~~~~~Ln~ky~~l-~~yl~qID~Ie~~V~~LE~~a  101 (125)
                      .+.+.-+..-+++++.|+..+ ...+..||+.-.+|..||+.+
T Consensus         5 ~dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~si   47 (48)
T 3ci9_A            5 QDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNI   47 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence            445555666677777777774 456778888888888888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	125
d1zavu1	30	Ribosomal protein L7/12, oligomerisation (N-termin	85.84
d3bi1a1	157	Glutamate carboxypeptidase II {Human (Homo sapiens	83.03

>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
superfamily: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
family: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
domain: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.84  E-value=0.46  Score=24.70  Aligned_cols=25  Identities=28%  Similarity=0.426  Sum_probs=18.5

Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHH
Q 033198           91 EQQVTQFEA-VISMLDKYVAVLESKM  115 (125)
Q Consensus        91 e~~V~~LE~-~a~~LD~ysk~LE~K~  115 (125)
                      |+-|+.+|+ +|.+|-+.+|.||.||
T Consensus         4 eeiv~aiekltvaelaelvk~ledkf   29 (30)
T d1zavu1           4 DEIIEAIEKLTVSELAELVKKLEDKF   29 (30)
T ss_dssp             HHHHHHHHHSBHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence            334455554 4789999999999997

>d3bi1a1 a.48.2.1 (A:594-750) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: N-cbl like
superfamily: Transferrin receptor-like dimerisation domain
family: Transferrin receptor-like dimerisation domain
domain: Glutamate carboxypeptidase II
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.03  E-value=1.7  Score=29.24  Aligned_cols=55  Identities=18%  Similarity=0.260  Sum_probs=39.3

Q ss_pred             HHHHHHhHHHHHHHHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033198           59 FGDVAAGLRVFVEQLKKKSGSFDEYVQQ----IDSIEQQVTQFEAVISMLDKYVAVLES  113 (125)
Q Consensus        59 m~~~a~~l~~~~~~Ln~ky~~l~~yl~q----ID~Ie~~V~~LE~~a~~LD~ysk~LE~  113 (125)
                      +.+-|..|...+.+|+.......+-+..    ++.+...+..|+.++..++.+...++.
T Consensus         4 ~~~Ya~~L~~~~~~l~~~~~~~~~~l~~~~~~~~~L~~a~~~f~~aa~~~~~~~~~~~~   62 (157)
T d3bi1a1           4 CRDYAVVLRKYADKIYSISMKHPQEMKTYSVSFDSLFSAVKNFTEIASKFSERLQDFDK   62 (157)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4566777777777777766665555543    788888888888888888888766543