Citrus Sinensis ID: 033207

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MLRNIILRCPLNLTAAIYRRRHLQSSSPPSSLFFFSSDSTVTQLTRLPSLLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGCKFLKILLIRSDPYQM
Secondary Structure (PSIPRED)
cccccEEcccccccccEEEcccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHccHHHHHccEEEEEEcEEEEEEEEEcEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHEEcccccccEEEEEcHHHccccccccc
Coil and Loop (DISEMBL)
mlrniilrcplNLTAAIYRRrhlqsssppsslfffssdstvtqltrlpsllegcdykhwlvvmeapkgypprdeiVNGYVKTLASAlgceedakksiySVSTKYYYAFGCKFLKILLIRSDPYQM
Flexible Loop (DISEMBL)
mlrniilrcpLNLTAAIYRRRHLQSSSPPSSLFFFSSDSTVTQLTRLPSLLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGCKFLKILLIRSDPYQM
Low Complexity Region (SEG)
MLRNIILRCPLNLTAAIYRRRHLQsssppsslfffssdsTVTQLTRLPSLLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGCKFLKILLIRSDPYQM
Disordered region (IsUnstruct)
***NIILRCPLNLTAAIYRRRH*********LFFFSSDSTVTQLTRLPSLLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGCKFLKILLIR******
Disordered Region (DISOPRED)
**R**********************************************LLEGCDYKHWLVVMEAPK***PRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGCKFLKILLIRSDPYQ*
Disordered Region (DISEMBL)
MLRNIILRCPLNLTAAIYRRRHLQSSSPPSSLFFFSSDSTVTQLTRLPSLLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGCKFLKILLIRSDPYQM
Disordered Region (DISPRO)
MLRNIILRCPLNL********************************RLPSLLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGCKFLKILLI*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLRNIILRCPLNLTAAIYRRRHLQSSSPPSSLFFFSSDSTVTQLTRLPSLLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGCKFLKILLIRSDPYQM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	125	2.2.26 [Sep-21-2011]
Q9LKA5	395	Uncharacterized protein A	no	no	0.488	0.154	0.606	8e-18
Q38732	230	DAG protein, chloroplasti	N/A	no	0.488	0.265	0.5	3e-12

>sp|Q9LKA5|UMP1_ARATH Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 50/61 (81%)

Query: 50  LLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFG 109
           LL+GCD++HWLVV+E P+G P RDEI++ Y+KTLA  +G E++A+  IYSVST+ YYAFG
Sbjct: 91  LLDGCDFEHWLVVVEPPQGEPTRDEIIDSYIKTLAQIVGSEDEARMKIYSVSTRCYYAFG 150

Query: 110 C 110
            
Sbjct: 151 A 151

Arabidopsis thaliana (taxid: 3702)

>sp|Q38732|DAG_ANTMA DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 44/62 (70%), Gaps = 1/62 (1%)

Query: 50  LLEGCDYKHWLVVMEAPKG-YPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAF 108
           +L GCDY HWL+VME PK   P R+++++ Y+ TLA+ LG  E+AKK++Y+ ST  Y  F
Sbjct: 80  MLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGF 139

Query: 109 GC 110
            C
Sbjct: 140 QC 141

Acts very early in chloroplast development, being required for expression of RNA polymerase beta subunit gene, and hence indirectly for subsequent expression of CAB and RBCS genes.

Antirrhinum majus (taxid: 4151)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
238479050	192	putative plastid developmental protein D	0.936	0.609	0.563	2e-27
15218508	188	putative plastid developmental protein D	0.936	0.622	0.563	2e-27
147826994	212	hypothetical protein VITISV_021886 [Viti	0.72	0.424	0.663	3e-27
225442106	212	PREDICTED: uncharacterized protein At3g1	0.72	0.424	0.663	4e-27
297839113	188	predicted protein [Arabidopsis lyrata su	0.936	0.622	0.554	4e-25
116792226	274	unknown [Picea sitchensis]	0.488	0.222	0.655	2e-19
148909275	224	unknown [Picea sitchensis]	0.488	0.272	0.639	7e-19
294463997	280	unknown [Picea sitchensis]	0.488	0.217	0.622	1e-18
147789423	428	hypothetical protein VITISV_017553 [Viti	0.768	0.224	0.477	5e-18
356544076	363	PREDICTED: uncharacterized protein At3g1	0.56	0.192	0.557	2e-17

>gi|238479050|ref|NP_001154468.1| putative plastid developmental protein DAG [Arabidopsis thaliana] gi|332197215|gb|AEE35336.1| putative plastid developmental protein DAG [Arabidopsis thaliana]

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/119 (56%), Positives = 85/119 (71%), Gaps = 2/119 (1%)

Query: 6   ILRCPLNLTAAIYRRRHLQSSSPPSSLFFFSSDSTVTQLTRLPSLLEGCDYKHWLVVMEA 65
           I+R PLNLTAA+  R    S    +S    S  ++ ++L R+PSL+EGCDYKHWLV+M+ 
Sbjct: 4   IIRRPLNLTAAVRFRLSPLSPFSGNSGSINSETTSWSELIRVPSLVEGCDYKHWLVLMKP 63

Query: 66  PKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGCKFLKILL--IRSDP 122
           P GYP R+ IV  +V+TLA ALG EE+AK+SIYSVSTKYYYAFGC+  + L   IRS P
Sbjct: 64  PNGYPTRNHIVQSFVETLAMALGSEEEAKRSIYSVSTKYYYAFGCRIHEPLTYKIRSLP 122

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218508|ref|NP_177397.1| putative plastid developmental protein DAG [Arabidopsis thaliana] gi|12323763|gb|AAG51843.1|AC010926_6 DAG-like protein; 97518-96580 [Arabidopsis thaliana] gi|124301130|gb|ABN04817.1| At1g72530 [Arabidopsis thaliana] gi|332197214|gb|AEE35335.1| putative plastid developmental protein DAG [Arabidopsis thaliana]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/119 (56%), Positives = 85/119 (71%), Gaps = 2/119 (1%)

Query: 6   ILRCPLNLTAAIYRRRHLQSSSPPSSLFFFSSDSTVTQLTRLPSLLEGCDYKHWLVVMEA 65
           I+R PLNLTAA+  R    S    +S    S  ++ ++L R+PSL+EGCDYKHWLV+M+ 
Sbjct: 4   IIRRPLNLTAAVRFRLSPLSPFSGNSGSINSETTSWSELIRVPSLVEGCDYKHWLVLMKP 63

Query: 66  PKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGCKFLKILL--IRSDP 122
           P GYP R+ IV  +V+TLA ALG EE+AK+SIYSVSTKYYYAFGC+  + L   IRS P
Sbjct: 64  PNGYPTRNHIVQSFVETLAMALGSEEEAKRSIYSVSTKYYYAFGCRIHEPLTYKIRSLP 122

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147826994|emb|CAN77774.1| hypothetical protein VITISV_021886 [Vitis vinifera]

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/92 (66%), Positives = 74/92 (80%), Gaps = 2/92 (2%)

Query: 27  SPPSSLFFFSSDSTV--TQLTRLPSLLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLA 84
           S  S+  +FSSDS    ++LTRLP++L+GCDY+HWLVVMEAP+ YP RDEIV GY++TLA
Sbjct: 42  SSRSAFGYFSSDSETQSSELTRLPTILDGCDYEHWLVVMEAPQRYPLRDEIVRGYIRTLA 101

Query: 85  SALGCEEDAKKSIYSVSTKYYYAFGCKFLKIL 116
             L  EE+AKKSIYSVSTKYYYAFGCK  + L
Sbjct: 102 MVLKSEEEAKKSIYSVSTKYYYAFGCKIAENL 133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442106|ref|XP_002272872.1| PREDICTED: uncharacterized protein At3g15000, mitochondrial [Vitis vinifera] gi|297742992|emb|CBI35859.3| unnamed protein product [Vitis vinifera]

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 61/92 (66%), Positives = 74/92 (80%), Gaps = 2/92 (2%)

Query: 27  SPPSSLFFFSSDSTV--TQLTRLPSLLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLA 84
           S  S+  +FSSDS    ++LTRLP++L+GCDY+HWLVVMEAP+ YP RDEIV GY++TLA
Sbjct: 42  SSRSAFGYFSSDSETQSSELTRLPTILDGCDYEHWLVVMEAPQRYPLRDEIVRGYIRTLA 101

Query: 85  SALGCEEDAKKSIYSVSTKYYYAFGCKFLKIL 116
             L  EE+AKKSIYSVSTKYYYAFGCK  + L
Sbjct: 102 MVLRSEEEAKKSIYSVSTKYYYAFGCKIAENL 133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839113|ref|XP_002887438.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297333279|gb|EFH63697.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/119 (55%), Positives = 82/119 (68%), Gaps = 2/119 (1%)

Query: 6   ILRCPLNLTAAIYRRRHLQSSSPPSSLFFFSSDSTVTQLTRLPSLLEGCDYKHWLVVMEA 65
           I+R PLNLTAA+  R    S    +S    S  +  ++L R+ SL+EGCDYKHWLV+M+ 
Sbjct: 4   IIRRPLNLTAAVRFRLAPLSPFSGNSGSVNSGTTRCSELIRVSSLVEGCDYKHWLVLMKP 63

Query: 66  PKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGCKFLKILL--IRSDP 122
           P  YP R+ IV  +V+TLA ALG EE+AKKSIYSVSTKYYYAFGC+  + L   IRS P
Sbjct: 64  PNRYPTRNHIVQRFVETLAMALGSEEEAKKSIYSVSTKYYYAFGCRVHEPLTYKIRSLP 122

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116792226|gb|ABK26281.1| unknown [Picea sitchensis]

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 52/61 (85%)

Query: 50  LLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFG 109
           LL+GCDY+HWL+VME P+G P RDEI++ Y+KTLA  +G EE+A+  IYSVSTK+Y+AFG
Sbjct: 98  LLDGCDYEHWLIVMEPPEGNPTRDEIIDSYIKTLAQIVGSEEEARMKIYSVSTKHYFAFG 157

Query: 110 C 110
           C
Sbjct: 158 C 158

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148909275|gb|ABR17737.1| unknown [Picea sitchensis]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 52/61 (85%)

Query: 50  LLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFG 109
           LL+GCDY+HWL+VME P+G P RDEI++ Y+KTL+  +G EE+A+  IYSVSTK+Y+AFG
Sbjct: 93  LLDGCDYEHWLIVMEPPQGSPTRDEIIDSYIKTLSQVVGSEEEARMKIYSVSTKHYFAFG 152

Query: 110 C 110
           C
Sbjct: 153 C 153

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294463997|gb|ADE77519.1| unknown [Picea sitchensis]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 52/61 (85%)

Query: 50  LLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFG 109
           LL+GCDY+HWL+V+E P+G P RDEI++ Y+KTL+  +G EE+A+  IYSVSTK+Y+AFG
Sbjct: 95  LLDGCDYEHWLIVLEPPEGSPTRDEIIDSYIKTLSQVVGSEEEARMKIYSVSTKHYFAFG 154

Query: 110 C 110
           C
Sbjct: 155 C 155

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789423|emb|CAN66606.1| hypothetical protein VITISV_017553 [Vitis vinifera]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 53/111 (47%), Positives = 69/111 (62%), Gaps = 15/111 (13%)

Query: 10  PLNLTAAIYRRRHLQSSSPPSSLFFFSSDSTVTQLT--------RLPS---LLEGCDYKH 58
           PL+  AA+   RHL  S+   S   FS+  T + L         R P    LL+GCD++H
Sbjct: 43  PLS-AAAVSVLRHLPQSTSARS---FSTRQTSSSLNDPNPNWSNRPPKETILLDGCDFEH 98

Query: 59  WLVVMEAPKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFG 109
           WLVVME P+G P RDEI++ Y+KTLA  +G EE A+  IYSVST+ Y+AFG
Sbjct: 99  WLVVMEKPEGDPTRDEIIDSYIKTLAMIVGSEEXARMKIYSVSTRCYFAFG 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544076|ref|XP_003540481.1| PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Glycine max]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 55/70 (78%)

Query: 50  LLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFG 109
           LL+GCD++HWLVVME P+G P RD+I++ Y+KTLA  +G EE+A+  IYSVST++Y+AFG
Sbjct: 90  LLDGCDFEHWLVVMEKPEGDPTRDDIIDSYIKTLAKVIGSEEEARMKIYSVSTRHYFAFG 149

Query: 110 CKFLKILLIR 119
               + L I+
Sbjct: 150 ALVSEELSIK 159

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
TAIR|locus:2030200	192	AT1G72530 "AT1G72530" [Arabido	0.936	0.609	0.537	1.3e-27
TAIR|locus:2086310	395	RIP1 "RNA-editing factor inter	0.48	0.151	0.616	1.7e-17
TAIR|locus:2083348	244	MORF3 "multiple organellar RNA	0.48	0.245	0.583	3.3e-15
TAIR|locus:2206639	229	AT1G32580 "AT1G32580" [Arabido	0.536	0.292	0.470	2.3e-14
TAIR|locus:2063389	232	MORF6 "multiple organellar RNA	0.536	0.288	0.470	3e-14
TAIR|locus:2051003	219	DAL1 "differentiation and gree	0.536	0.305	0.455	1e-13
TAIR|locus:2200131	232	MORF9 "multiple organellar RNA	0.488	0.262	0.516	1.6e-13
UNIPROTKB|Q2R8U1	374	Os11g0216400 "Os11g0216400 pro	0.472	0.157	0.491	1.1e-11
TAIR|locus:2119782	419	MORF1 "multiple organellar RNA	0.528	0.157	0.405	4.2e-08
TAIR|locus:2156344	723	MORF4 "AT5G44780" [Arabidopsis	0.456	0.078	0.423	1.2e-07

TAIR|locus:2030200 AT1G72530 "AT1G72530" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 64/119 (53%), Positives = 80/119 (67%)

Query:     6 ILRCPLNLTAAIYRRRHLQXXXXXXXXXXXXXXXTVTQLTRLPSLLEGCDYKHWLVVMEA 65
             I+R PLNLTAA+  R                   + ++L R+PSL+EGCDYKHWLV+M+ 
Sbjct:     4 IIRRPLNLTAAVRFRLSPLSPFSGNSGSINSETTSWSELIRVPSLVEGCDYKHWLVLMKP 63

Query:    66 PKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFGCKFLKILL--IRSDP 122
             P GYP R+ IV  +V+TLA ALG EE+AK+SIYSVSTKYYYAFGC+  + L   IRS P
Sbjct:    64 PNGYPTRNHIVQSFVETLAMALGSEEEAKRSIYSVSTKYYYAFGCRIHEPLTYKIRSLP 122

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2086310 RIP1 "RNA-editing factor interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 37/60 (61%), Positives = 50/60 (83%)

Query:    50 LLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFG 109
             LL+GCD++HWLVV+E P+G P RDEI++ Y+KTLA  +G E++A+  IYSVST+ YYAFG
Sbjct:    91 LLDGCDFEHWLVVVEPPQGEPTRDEIIDSYIKTLAQIVGSEDEARMKIYSVSTRCYYAFG 150

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0009451 "RNA modification" evidence=IMP

GO:0016554 "cytidine to uridine editing" evidence=IMP

GO:0080156 "mitochondrial mRNA modification" evidence=IMP

TAIR|locus:2083348 MORF3 "multiple organellar RNA editing factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 35/60 (58%), Positives = 43/60 (71%)

Query:    50 LLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAFG 109
             LL+GCDY+HWL+VME     P  +E++N YVKTL S LG +E+AKK IYSV T  Y  FG
Sbjct:    88 LLDGCDYEHWLIVMEFTDPKPTEEEMINSYVKTLTSVLGWQEEAKKKIYSVCTSTYTGFG 147

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:1900864 "mitochondrial RNA modification" evidence=IMP

TAIR|locus:2206639 AT1G32580 "AT1G32580" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 32/68 (47%), Positives = 48/68 (70%)

Query:    45 TRLPSLLEGCDYKHWLVVMEAPKGY-PPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTK 103
             T +  L  GCDY+HWL+VM+ P G    + ++++ YV+TLA  +G EE+AKK IY+VS +
Sbjct:    82 TEMAPLFPGCDYEHWLIVMDKPGGENATKQQMIDCYVQTLAKIIGSEEEAKKKIYNVSCE 141

Query:   104 YYYAFGCK 111
              Y+ FGC+
Sbjct:   142 RYFGFGCE 149

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2063389 MORF6 "multiple organellar RNA editing factor 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 32/68 (47%), Positives = 48/68 (70%)

Query:    45 TRLPSLLEGCDYKHWLVVMEAPKGY-PPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTK 103
             T +  L  GCDY+HWL+VME P G    + ++++ YV+TLA  +G EE+A+K IY+VS +
Sbjct:    85 TEMAPLFPGCDYEHWLIVMEKPGGENAQKQQMIDCYVQTLAKIVGSEEEARKKIYNVSCE 144

Query:   104 YYYAFGCK 111
              Y+ FGC+
Sbjct:   145 RYFGFGCE 152

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2051003 DAL1 "differentiation and greening-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 31/68 (45%), Positives = 47/68 (69%)

Query:    45 TRLPSLLEGCDYKHWLVVMEAPKGY-PPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTK 103
             T +  L  GCDY+HWL+VM+ P G    + ++++ Y++TLA  +G EE+AKK IY+VS +
Sbjct:    73 TEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVGSEEEAKKRIYNVSCE 132

Query:   104 YYYAFGCK 111
              Y  FGC+
Sbjct:   133 RYLGFGCE 140

GO:0003674 "molecular_function" evidence=ND

GO:0002103 "endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0009657 "plastid organization" evidence=IMP

GO:0000478 "endonucleolytic cleavage involved in rRNA processing" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2200131 MORF9 "multiple organellar RNA editing factor 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 32/62 (51%), Positives = 44/62 (70%)

Query:    50 LLEGCDYKHWLVVMEAPKG-YPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAF 108
             +L GCDY HWL+VME PK   P RD++++ Y+ TLA+ LG  E+AKK++Y+ ST  Y  F
Sbjct:    81 MLPGCDYNHWLIVMEFPKDPAPSRDQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGF 140

Query:   109 GC 110
              C
Sbjct:   141 QC 142

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:1900865 "chloroplast RNA modification" evidence=IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|Q2R8U1 Os11g0216400 "Os11g0216400 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 165 (63.1 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 29/59 (49%), Positives = 39/59 (66%)

Query:    50 LLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALGCEEDAKKSIYSVSTKYYYAF 108
             L EGCDY HWL+ ME P   P R+E++  Y++TLA  +G  E+AKK +Y+ ST  Y  F
Sbjct:    85 LFEGCDYNHWLITMEFPDPKPTREEMIETYLQTLAKVVGSYEEAKKRMYAFSTTTYVGF 143

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

TAIR|locus:2119782 MORF1 "multiple organellar RNA editing factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 28/69 (40%), Positives = 40/69 (57%)

Query:    43 QLTRLPSLLEGCDYKHWLVVMEAPKGYPPR--DEIVNGYVKTLASALGCE-EDAKKSIYS 99
             ++T    L EGCDY HWL+ M+  K   P+  +E+V  Y +T A  LG   E+AK+ +Y+
Sbjct:    74 EITEDTVLFEGCDYNHWLITMDFSKEETPKSPEEMVAAYEETCAQGLGISVEEAKQRMYA 133

Query:   100 VSTKYYYAF 108
              ST  Y  F
Sbjct:   134 CSTTTYQGF 142

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:1900864 "mitochondrial RNA modification" evidence=IMP

GO:1900865 "chloroplast RNA modification" evidence=IMP

TAIR|locus:2156344 MORF4 "AT5G44780" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 25/59 (42%), Positives = 36/59 (61%)

Query:    52 EGCDYKHWLVVMEAPK-GYPPRDEIVNGYVKTLASALGCE-EDAKKSIYSVSTKYYYAF 108
             EGCD+ HWL+ M  PK   P R+E+++ + +T A  L    E+AKK IY++ T  Y  F
Sbjct:    78 EGCDFNHWLITMNFPKDNLPSREEMISIFEQTCAKGLAISLEEAKKKIYAICTTSYQGF 136

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048481 "ovule development" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00