Citrus Sinensis ID: 033208

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MATASATLSPATFISATAAAGSCRRRRSVKVSYITGLNSFGGLKAQNSLTSLGMPVSTEQAFAKIVSSVRAPGKGEGQSGGVLTSTCNAASEIFRIAAIMNGLVLIGVAVGFVLLRIEASVEESE
Secondary Structure (PSIPRED)
cccccccccccEEHHHHHccccccccccccEEEEEEccccccccccccEEEEcccccHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHccEEEEEEEEEEEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEcHHHcccccccccccccEEEEEEccccccccccccEEEccccccHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
matasatlspatFISATAaagscrrrrSVKVSYITGlnsfgglkaqnsltslgmpvstEQAFAKIVSsvrapgkgegqsggvltstCNAASEIFRIAAIMNGLVLIGVAVGFVLLRIEASVEESE
Flexible Loop (DISEMBL)
matasatlspatfisataaagscrrrRSVKVSYITglnsfgglkaqnSLTSLGMPVSTEQAFAKIVSSVRapgkgegqsggvLTSTCNAASEIFRIAAIMNGLVLIGVAVGFVLLRIEASVEESE
Low Complexity Region (SEG)
MATASATLSPATFISATAAAGSCRRRRSVKVSYITGLNSFGGLKAQNSLTSLGMPVSTEQAFAKIVSSVRAPGKGEGQSGGVLTSTCNAASEIFRIAAIMNGLVLIGVAVGFVLLRIEASVEESE
Disordered region (IsUnstruct)
************FISATAAAGSCRRRRSVKVSYITGLNSFGGLKAQNSLT*L********AFAKIV**************GVLTSTCNAASEIFRIAAIMNGLVLIGVAVGFVLLRIE*******
Disordered Region (DISOPRED)
**********************************TGLNSFGGLKAQNSLTSLGMPVSTEQAFAKI*********************CNAASEIFRIAAIMNGLVLIGVAVGFVLLRIEAS*****
Disordered Region (DISEMBL)
********SPATFISAT**********SVKVSYITGLNSFGGLKAQNSLTSLGMPVSTEQAFAKIVSSVRAP**********LTSTCNAASEIFRIAAIMNGLVLIGVAVGFVLLRIEASVEESE
Disordered Region (DISPRO)
***************************SVKVSYITGLNSFGGLKAQNSLTSLGMPVSTEQAFAKIVSSVR**************STCNAASEIFRIAAIMNGLVLIGVAVGFVLLRIEASVEES*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATASATLSPATFISATAAAGSCRRRRSVKVSYITGLNSFGGLKAQNSLTSLGMPVSTEQAFAKIVSSVRAPGKGEGQSGGVLTSTCNAASEIFRIAAIMNGLVLIGVAVGFVLLRIEASVEESE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	125	2.2.26 [Sep-21-2011]
P80883	36	Cytochrome b6-f complex s	N/A	no	0.288	1.0	0.833	3e-10

>sp|P80883|PETM_SPIOL Cytochrome b6-f complex subunit 7 (Fragment) OS=Spinacia oleracea GN=petM PE=1 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/36 (83%), Positives = 35/36 (97%)

Query: 88  NAASEIFRIAAIMNGLVLIGVAVGFVLLRIEASVEE 123
           NAA+EIFRIAA+MNGL L+GVA+GFVLLRIEA+VEE
Sbjct: 1   NAAAEIFRIAAVMNGLTLVGVAIGFVLLRIEATVEE 36

Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.
Spinacia oleracea (taxid: 3562)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
225428637	126	PREDICTED: uncharacterized protein LOC10	0.992	0.984	0.708	2e-40
147855053	126	hypothetical protein VITISV_027615 [Viti	0.992	0.984	0.700	2e-39
449523413	124	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.992	1.0	0.688	5e-39
351723627	124	uncharacterized protein LOC100500243 [Gl	0.992	1.0	0.632	5e-35
224123402	122	predicted protein [Populus trichocarpa]	0.976	1.0	0.672	2e-34
224098449	94	predicted protein [Populus trichocarpa]	0.752	1.0	0.744	4e-34
224163891	98	predicted protein [Populus trichocarpa]	0.776	0.989	0.721	6e-34
449438446	169	PREDICTED: uncharacterized protein LOC10	0.992	0.733	0.682	9e-34
449438448	125	PREDICTED: uncharacterized protein LOC10	0.992	0.992	0.682	2e-33
225458473	122	PREDICTED: uncharacterized protein LOC10	0.976	1.0	0.648	5e-33

>gi|225428637|ref|XP_002284808.1| PREDICTED: uncharacterized protein LOC100255593 [Vitis vinifera]

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 90/127 (70%), Positives = 105/127 (82%), Gaps = 3/127 (2%)

Query: 1   MATASATLSPATFISATAAAGSCR--RRRSVKVSYITGLNSFGGLKAQNSLTSLGMPVST 58
           MATASATLSP+TF SA A AG  R  +RR   V +I GLNSF GLKA NS+ SLG+PV T
Sbjct: 1   MATASATLSPSTF-SAAAIAGLGRTSQRRKTNVHFIGGLNSFDGLKAYNSVASLGLPVCT 59

Query: 59  EQAFAKIVSSVRAPGKGEGQSGGVLTSTCNAASEIFRIAAIMNGLVLIGVAVGFVLLRIE 118
           EQ+FAKIV S+++P +G+G+ GG L+STCNA  EIFRIAAIMNGLVL+GVAVGFVLLRIE
Sbjct: 60  EQSFAKIVGSLKSPSQGKGRGGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRIE 119

Query: 119 ASVEESE 125
           ASVEE+E
Sbjct: 120 ASVEEAE 126

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147855053|emb|CAN82364.1| hypothetical protein VITISV_027615 [Vitis vinifera]

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/127 (70%), Positives = 104/127 (81%), Gaps = 3/127 (2%)

Query: 1   MATASATLSPATFISATAAAGSCR--RRRSVKVSYITGLNSFGGLKAQNSLTSLGMPVST 58
           MATASATLSP+TF SA A AG  R  +RR   V +I GLNSF GLKA NS+ SLG+PV T
Sbjct: 1   MATASATLSPSTF-SAAAIAGLGRTSQRRKTNVHFIGGLNSFDGLKAYNSVASLGLPVCT 59

Query: 59  EQAFAKIVSSVRAPGKGEGQSGGVLTSTCNAASEIFRIAAIMNGLVLIGVAVGFVLLRIE 118
           EQ+FAKIV S+++  +G+G+ GG L+STCNA  EIFRIAAIMNGLVL+GVAVGFVLLRIE
Sbjct: 60  EQSFAKIVXSLKSXSQGKGRGGGALSSTCNAVGEIFRIAAIMNGLVLVGVAVGFVLLRIE 119

Query: 119 ASVEESE 125
           ASVEE+E
Sbjct: 120 ASVEEAE 126

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523413|ref|XP_004168718.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101210164 [Cucumis sativus]

 Score =  164 bits (416), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 86/125 (68%), Positives = 102/125 (81%), Gaps = 1/125 (0%)

Query: 1   MATASATLSPATFISATAAAGSCRRRRSVKVSYITGLNSFGGLKAQNSLTSLGMPVSTEQ 60
           MATASATLS A   +A  +AGS RR+R     +I+GLNSF GLKA N++ SLG+PV  +Q
Sbjct: 1   MATASATLSTAMSSAAPISAGS-RRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQ 59

Query: 61  AFAKIVSSVRAPGKGEGQSGGVLTSTCNAASEIFRIAAIMNGLVLIGVAVGFVLLRIEAS 120
           +FAKIVSS++ P KG G+ GG L+STCNAA EIFRIAAI+NGLVLIGVAVGFVLLRIEAS
Sbjct: 60  SFAKIVSSLKYPSKGRGKGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEAS 119

Query: 121 VEESE 125
           VEE+E
Sbjct: 120 VEEAE 124

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723627|ref|NP_001235238.1| uncharacterized protein LOC100500243 [Glycine max] gi|255629825|gb|ACU15263.1| unknown [Glycine max]

 Score =  151 bits (381), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 79/125 (63%), Positives = 97/125 (77%), Gaps = 1/125 (0%)

Query: 1   MATASATLSPATFISATAAAGSCRRRRSVKVSYITGLNSFGGLKAQNSLTSLGMPVSTEQ 60
           MA ASAT +PAT      ++ +  +RR   V +I GLNSFGGLKAQNS+TSLG+PV TEQ
Sbjct: 1   MAMASAT-TPATITVVAISSVASTKRRERNVHFIRGLNSFGGLKAQNSVTSLGLPVCTEQ 59

Query: 61  AFAKIVSSVRAPGKGEGQSGGVLTSTCNAASEIFRIAAIMNGLVLIGVAVGFVLLRIEAS 120
            FAK+VSS++     +G+ GG  +STCNAA EIF+IAAIMNGLVL+GVA+GFVLLR+EA 
Sbjct: 60  CFAKVVSSLKYQSSSKGRGGGAASSTCNAAGEIFQIAAIMNGLVLVGVAIGFVLLRVEAF 119

Query: 121 VEESE 125
           VEESE
Sbjct: 120 VEESE 124

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123402|ref|XP_002330306.1| predicted protein [Populus trichocarpa] gi|118486604|gb|ABK95140.1| unknown [Populus trichocarpa] gi|222871341|gb|EEF08472.1| predicted protein [Populus trichocarpa]

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/125 (67%), Positives = 102/125 (81%), Gaps = 3/125 (2%)

Query: 1   MATASATLSPATFISATAAAGSCRRRRSVKVSYITGLNSFGGLKAQNSLTSLGMPVSTEQ 60
           MAT SAT SP T +   A+A S  +R+   V+YITGLNSFGGLKA NS++SLG+ V +EQ
Sbjct: 1   MATTSATFSPPTLV---ASAVSSPKRKQTNVNYITGLNSFGGLKAHNSVSSLGLSVGSEQ 57

Query: 61  AFAKIVSSVRAPGKGEGQSGGVLTSTCNAASEIFRIAAIMNGLVLIGVAVGFVLLRIEAS 120
           +FAKIVSS++AP KG+G SGG L+STC+   EIFRIAA+MNGLVL+GVAVGFVLLRIEA 
Sbjct: 58  SFAKIVSSLKAPSKGKGGSGGALSSTCSNVGEIFRIAAVMNGLVLVGVAVGFVLLRIEAF 117

Query: 121 VEESE 125
           VEE+E
Sbjct: 118 VEETE 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098449|ref|XP_002334556.1| predicted protein [Populus trichocarpa] gi|222873166|gb|EEF10297.1| predicted protein [Populus trichocarpa]

 Score =  148 bits (373), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 70/94 (74%), Positives = 86/94 (91%)

Query: 29  VKVSYITGLNSFGGLKAQNSLTSLGMPVSTEQAFAKIVSSVRAPGKGEGQSGGVLTSTCN 88
           +KV+YITGL+SFGGLKA N+++SLG+PV TEQ+FAK+VSS+RAP KG+G+SGG L+STC+
Sbjct: 1   IKVNYITGLDSFGGLKAHNNVSSLGLPVCTEQSFAKVVSSLRAPSKGKGRSGGALSSTCS 60

Query: 89  AASEIFRIAAIMNGLVLIGVAVGFVLLRIEASVE 122
              EIFRIAAIMNGLVL+GVAVGFVLLR+EA VE
Sbjct: 61  DVGEIFRIAAIMNGLVLVGVAVGFVLLRVEAFVE 94

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224163891|ref|XP_002338613.1| predicted protein [Populus trichocarpa] gi|222873018|gb|EEF10149.1| predicted protein [Populus trichocarpa]

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 70/97 (72%), Positives = 87/97 (89%)

Query: 26  RRSVKVSYITGLNSFGGLKAQNSLTSLGMPVSTEQAFAKIVSSVRAPGKGEGQSGGVLTS 85
           R+ +KV+YITGL+SFGGLKA  +++SLG+PV TEQ+FAK+VSS+RAP KG+G+SGG L+S
Sbjct: 2   RKQIKVNYITGLDSFGGLKAHINVSSLGLPVCTEQSFAKVVSSLRAPSKGKGRSGGALSS 61

Query: 86  TCNAASEIFRIAAIMNGLVLIGVAVGFVLLRIEASVE 122
           TC+   EIFRIAAIMNGLVL+GVAVGFVLLR+EA VE
Sbjct: 62  TCSDVGEIFRIAAIMNGLVLVGVAVGFVLLRVEAFVE 98

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438446|ref|XP_004136999.1| PREDICTED: uncharacterized protein LOC101210164 isoform 1 [Cucumis sativus]

 Score =  147 bits (371), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 86/126 (68%), Positives = 104/126 (82%), Gaps = 2/126 (1%)

Query: 1   MATASATLSPATFISATAAAGSCRRRRSVKVSYITGLNSFGGLKAQNSLTSLGMPVSTEQ 60
           MATASATLS A   +A  +AGS RR+R     +I+GLNSF GLKA N++ SLG+PV  +Q
Sbjct: 45  MATASATLSTAMSSAAPISAGS-RRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQ 103

Query: 61  AFAKIVSSVRAPGKGEGQSGGV-LTSTCNAASEIFRIAAIMNGLVLIGVAVGFVLLRIEA 119
           +FAKIVSS++ P KG+G++GG  L+STCNAA EIFRIAAI+NGLVLIGVAVGFVLLRIEA
Sbjct: 104 SFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEA 163

Query: 120 SVEESE 125
           SVEE+E
Sbjct: 164 SVEEAE 169

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438448|ref|XP_004137000.1| PREDICTED: uncharacterized protein LOC101210164 isoform 2 [Cucumis sativus]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/126 (68%), Positives = 104/126 (82%), Gaps = 2/126 (1%)

Query: 1   MATASATLSPATFISATAAAGSCRRRRSVKVSYITGLNSFGGLKAQNSLTSLGMPVSTEQ 60
           MATASATLS A   +A  +AGS RR+R     +I+GLNSF GLKA N++ SLG+PV  +Q
Sbjct: 1   MATASATLSTAMSSAAPISAGS-RRQRQTNAHFISGLNSFSGLKAHNNVVSLGLPVCADQ 59

Query: 61  AFAKIVSSVRAPGKGEGQSGG-VLTSTCNAASEIFRIAAIMNGLVLIGVAVGFVLLRIEA 119
           +FAKIVSS++ P KG+G++GG  L+STCNAA EIFRIAAI+NGLVLIGVAVGFVLLRIEA
Sbjct: 60  SFAKIVSSLKYPSKGKGKNGGGALSSTCNAAGEIFRIAAIINGLVLIGVAVGFVLLRIEA 119

Query: 120 SVEESE 125
           SVEE+E
Sbjct: 120 SVEEAE 125

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458473|ref|XP_002284054.1| PREDICTED: uncharacterized protein LOC100264352 isoform 1 [Vitis vinifera] gi|302142389|emb|CBI19592.3| unnamed protein product [Vitis vinifera]

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 81/125 (64%), Positives = 99/125 (79%), Gaps = 3/125 (2%)

Query: 1   MATASATLSPATFISATAAAGSCRRRRSVKVSYITGLNSFGGLKAQNSLTSLGMPVSTEQ 60
           MATASA L PAT  +   ++GS  ++   KV Y+ GLNSFGGLKA NS+ ++G+P+ TEQ
Sbjct: 1   MATASAILCPATVTARVRSSGSKTQKGEKKVVYVAGLNSFGGLKAHNSVVAMGVPMCTEQ 60

Query: 61  AFAKIVSSVRAPGKGEGQSGGVLTSTCNAASEIFRIAAIMNGLVLIGVAVGFVLLRIEAS 120
            FA +VSS++A G+G G +   L+STC+AASEIFRIAAIMN LVLIGVAVGFVLLRIEAS
Sbjct: 61  CFANVVSSLKAKGRGGGGA---LSSTCSAASEIFRIAAIMNALVLIGVAVGFVLLRIEAS 117

Query: 121 VEESE 125
           VEESE
Sbjct: 118 VEESE 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
TAIR|locus:2066291	125	AT2G26500 "AT2G26500" [Arabido	0.968	0.968	0.559	3.4e-29

TAIR|locus:2066291 AT2G26500 "AT2G26500" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 71/127 (55%), Positives = 92/127 (72%)

Query:     1 MATASA-TLSPATFISATAAAGSCRRRRSVKVSYITGLNSFGGLKAQNS-LTSLGMPVST 58
             MATA+A  +   T     + +G  +++  +KVSYITGLNS+GGLKAQN+ + S+G P+ T
Sbjct:     1 MATAAAPAVISWTRSGIVSKSGQTQKKSEMKVSYITGLNSYGGLKAQNNKVVSMGSPLCT 60

Query:    59 EQAFAKIVSSVRAPGKGEGQSGGVLTSTCNAASEIFRIAAIMNGLVLIGVAVGFVLLRIE 118
             EQ FA +V S+    KG   +GG L++TCNA  EIF+IAAIMN L L+GVAVGFVLLRIE
Sbjct:    61 EQCFANVVMSL----KGRRGNGGALSTTCNAVGEIFKIAAIMNALTLVGVAVGFVLLRIE 116

Query:   119 ASVEESE 125
              SVEE+E
Sbjct:   117 TSVEEAE 123


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.127   0.337    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      125       125   0.00091  102 3  10 22  0.38    31
                                                     29  0.39    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  519 (55 KB)
  Total size of DFA:  115 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.18u 0.14s 16.32t   Elapsed:  00:00:01
  Total cpu time:  16.18u 0.14s 16.32t   Elapsed:  00:00:01
  Start:  Fri May 10 18:25:16 2013   End:  Fri May 10 18:25:17 2013

GO:0009496 "plastoquinol--plastocyanin reductase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0009512 "cytochrome b6f complex" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	125
pfam08041	30	pfam08041, PetM, PetM family of cytochrome b6f com	2e-06
PRK11876	32	PRK11876, petM, cytochrome b6-f complex subunit Pe	0.003

>gnl|CDD|191930 pfam08041, PetM, PetM family of cytochrome b6f complex subunit 7

 Score = 40.9 bits (97), Expect = 2e-06
 Identities = 14/27 (51%), Positives = 21/27 (77%)

Query: 91  SEIFRIAAIMNGLVLIGVAVGFVLLRI 117
            EIF +A I   LVL+G+A+GF+LL++
Sbjct: 1   GEIFNVAVICFVLVLVGLALGFLLLKL 27

This family consists of the PetM family of cytochrome b6f complex subunit IV. The cytochrome b6f complex consists of 7 subunits and contains 2 beta hemes and 1 chlorophyll alpha per cytochrome f. It is highly active in transferring electrons from decylplastoquinol to oxidized plastocyanin. Length = 30

>gnl|CDD|183354 PRK11876, petM, cytochrome b6-f complex subunit PetM; Reviewed

 Score = 32.7 bits (75), Expect = 0.003
 Identities = 14/29 (48%), Positives = 22/29 (75%)

Query: 90  ASEIFRIAAIMNGLVLIGVAVGFVLLRIE 118
           ASEIF IAA+   L+ +G+A G +LL+++
Sbjct: 2   ASEIFGIAALFWVLIPVGLAGGALLLKLQ 30

Length = 32

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
PRK11876	32	petM cytochrome b6-f complex subunit PetM; Reviewe	99.39
PF08041	31	PetM: PetM family of cytochrome b6f complex subuni	99.28

>PRK11876 petM cytochrome b6-f complex subunit PetM; Reviewed

Probab=99.39  E-value=2.9e-13  Score=82.27  Aligned_cols=30  Identities=47%  Similarity=0.686  Sum_probs=28.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhhheeeh
Q 033208           90 ASEIFRIAAIMNGLVLIGVAVGFVLLRIEA  119 (125)
Q Consensus        90 agEIf~iA~im~~LtLVGlavGFvLLrvea  119 (125)
                      ++|||++|+|||+|||||+++||+|||||+
T Consensus         2 a~EIf~~A~i~~~LvlvGlalGf~LLkiqg   31 (32)
T PRK11876          2 ASEIFGIAALFWVLIPVGLAGGALLLKLQG   31 (32)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHheeeec
Confidence            689999999999999999999999999985

>PF08041 PetM: PetM family of cytochrome b6f complex subunit 7; InterPro: IPR012595 This family consists of the PetM family of cytochrome b6f complex subunit IV

Probab=99.28  E-value=2.3e-12  Score=77.88  Aligned_cols=30  Identities=60%  Similarity=0.997  Sum_probs=27.8

Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhheeehh
Q 033208           91 SEIFRIAAIMNGLVLIGVAVGFVLLRIEAS  120 (125)
Q Consensus        91 gEIf~iA~im~~LtLVGlavGFvLLrvea~  120 (125)
                      +|||++|.|||+|||||+++||+|||||..
T Consensus         1 ~EIf~~a~i~~~lvlvGla~Gf~LLkiQG~   30 (31)
T PF08041_consen    1 GEIFNIAVICFGLVLVGLALGFVLLKIQGG   30 (31)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTT-
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhheeecC
Confidence            699999999999999999999999999754

The cytochrome b6f complex consists of 7 subunits and contains 2 beta haem's and 1 chlorophyll alpha per cytochrome f. It is highly active in transferring electrons from decylplastoquinol to oxidised plastocyanin [].; GO: 0009512 cytochrome b6f complex; PDB: 2ZT9_F 1Q90_M 2E76_F 2E75_F 2E74_F 2D2C_S 1VF5_S.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	125
1q90_M	39	Cytochrome B6F complex subunit PETM; membrane prot	99.58
1vf5_F	35	Protein PET M; photosynthesis, membrane protein co	99.53

>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1

Probab=99.58  E-value=6.2e-16  Score=96.48  Aligned_cols=36  Identities=50%  Similarity=0.725  Sum_probs=33.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHHhhhhhhheeehhhhcc
Q 033208           89 AASEIFRIAAIMNGLVLIGVAVGFVLLRIEASVEES  124 (125)
Q Consensus        89 ~agEIf~iA~im~~LtLVGlavGFvLLrvea~veE~  124 (125)
                      +++|||++|+|||+|||||+++||+|||||+++||+
T Consensus         2 ~~~EIf~~A~i~~~L~LvGla~Gf~LLkiqg~~ee~   37 (39)
T 1q90_M            2 EAEFIAGTALTMVGMTLVGLAIGFVLLRVESLVEEG   37 (39)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhc
Confidence            689999999999999999999999999999999997

>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*

Probab=99.53  E-value=2.9e-15  Score=91.58  Aligned_cols=34  Identities=29%  Similarity=0.592  Sum_probs=31.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhhheeehhhhc
Q 033208           90 ASEIFRIAAIMNGLVLIGVAVGFVLLRIEASVEE  123 (125)
Q Consensus        90 agEIf~iA~im~~LtLVGlavGFvLLrvea~veE  123 (125)
                      ++|||++|+|||+|||||+++||+|||||+.+||
T Consensus         2 ~~EIf~~A~i~~~LvLvGla~Gf~LLkiqg~~~E   35 (35)
T 1vf5_F            2 TEEMLYAALLSFGLIFVGWGLGVLLLKIQGAEKE   35 (35)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhheeeccccC
Confidence            6899999999999999999999999999999887

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	125
d1q90m_	34	PetM subunit of the cytochrome b6f complex {Chlamy	99.0
d2e74f1	32	PetM subunit of the cytochrome b6f complex {Mastig	96.31

>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: PetM subunit of the cytochrome b6f complex
family: PetM subunit of the cytochrome b6f complex
domain: PetM subunit of the cytochrome b6f complex
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.00  E-value=7.3e-11  Score=70.36  Aligned_cols=33  Identities=52%  Similarity=0.750  Sum_probs=31.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhhheeehhhh
Q 033208           90 ASEIFRIAAIMNGLVLIGVAVGFVLLRIEASVE  122 (125)
Q Consensus        90 agEIf~iA~im~~LtLVGlavGFvLLrvea~ve  122 (125)
                      ++.|..+|..|.++||+|+++||||||||+.+|
T Consensus         2 a~fiagta~tmig~tl~glaigfvllrve~~ve   34 (34)
T d1q90m_           2 AEFIAGTALTMVGMTLVGLAIGFVLLRVESLVE   34 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CceecchhHHHHHHHHHHHHHHHhheeeHhhcC
Confidence            688999999999999999999999999999886

>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: PetM subunit of the cytochrome b6f complex
family: PetM subunit of the cytochrome b6f complex
domain: PetM subunit of the cytochrome b6f complex
species: Mastigocladus laminosus [TaxId: 83541]

Probab=96.31  E-value=0.0012  Score=38.07  Aligned_cols=30  Identities=30%  Similarity=0.626  Sum_probs=28.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhhhhheeeh
Q 033208           90 ASEIFRIAAIMNGLVLIGVAVGFVLLRIEA  119 (125)
Q Consensus        90 agEIf~iA~im~~LtLVGlavGFvLLrvea  119 (125)
                      .+||..-|.+.|+|..||-.+|-.|||||.
T Consensus         2 ~~eil~aa~lsfglifvgwglgalllkiqg   31 (32)
T d2e74f1           2 TEEMLYAALLSFGLIFVGWGLGVLLLKIQG   31 (32)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHhhHHHHHhHHHHHHhhhcC
Confidence            479999999999999999999999999985