Citrus Sinensis ID: 033245

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120---
Protein Sequence
MSKTEVINVRILFTAAVFLQICNGVSVLGSEIDVNYVMPQSQSQRVCSKSIEDCFTDAELMESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSGQANSYNRGCQIITRCARGIKN
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHccccHHHHcccHHHHHHHHccccEEEHHHHcccccccccccccccccccccccccccccHHHHHHHccccc
Coil and Loop (DISEMBL)
MSKTEVINVRILFTAAVFLQICNGVsvlgseidvnyvmpqsqsqrVCSKSIEDCFTDAELMESESSRRVLVMQKKYisydtlrrdmvpcdkpgasyyechsgqansynrgcQIITRCARGIKN
Flexible Loop (DISEMBL)
MSKTEVINVRILFTAAVFLQICNGVSVLGSEIDVNYvmpqsqsqrvCSKSIEDCFTDAElmesessrrvLVMQKKyisydtlrrdMVPCDKPGASYYECHsgqansynrgcQIITRCARGIKN
Low Complexity Region (SEG)
MSKTEVINVRILFTAAVFLQICNGVSVLGSEIDVNYVMPQSQSQRVCSKSIEDCFTDAELMESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSGQANSYNRGCQIITRCARGIKN
Disordered region (IsUnstruct)
*****VINVRILFTAAVFLQICNGVSVLGSEIDVNYVMPQ*****VCSKSIEDCFTDA*********RVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSGQANSYNRGCQIITRCAR****
Disordered Region (DISOPRED)
**********ILFTAAVFLQICNGVSVLGSEIDVNYVMPQSQ*****************************MQKKYISYDTLRRDMVPCD**G***************RGCQIIT*CAR****
Disordered Region (DISEMBL)
MSKTEVINVRILFTAAVFLQICNGVSVLGSEIDVNYVMP*********KSIEDCFTDAELMESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSGQANSYNRGCQIITRCARGIKN
Disordered Region (DISPRO)
***TEVINVRILFTAAVFLQICNGVSVLGSEIDVNYVMP***S*********D**T****MESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSGQANSYNRGCQIITRCARG***
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSKTEVINVRILFTAAVFLQICNGVSVLGSEIDVNYVMPQSQSQRVCSKSIEDCFTDAELMESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSGQANSYNRGCQIITRCARGIKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	123	2.2.26 [Sep-21-2011]
Q2HIM9	113	Protein RALF-like 31 OS=A	yes	no	0.512	0.557	0.746	4e-23
Q9LK37	118	Protein RALF-like 24 OS=A	no	no	0.463	0.483	0.789	4e-22
Q945T0	115	Rapid alkalinization fact	N/A	no	0.813	0.869	0.422	1e-14
Q8L9P8	116	Protein RALF-like 33 OS=A	no	no	0.585	0.620	0.525	3e-13
Q9MA62	119	Protein RALF-like 22 OS=A	no	no	0.471	0.487	0.6	3e-13
Q9SRY3	120	Protein RALF-like 1 OS=Ar	no	no	0.569	0.583	0.520	4e-13
Q9LUS7	138	Rapid alkalinization fact	no	no	0.463	0.413	0.559	7e-12
Q6NME6	110	Protein RALF-like 19 OS=A	no	no	0.487	0.545	0.508	3e-11
Q9FZA0	110	Protein RALF-like 4 OS=Ar	no	no	0.487	0.545	0.475	5e-10
O23262	117	Protein RALF-like 32 OS=A	no	no	0.853	0.897	0.314	8e-07

>sp|Q2HIM9|RLF31_ARATH Protein RALF-like 31 OS=Arabidopsis thaliana GN=RALFL31 PE=3 SV=1

 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 47/63 (74%), Positives = 54/63 (85%)

Query: 57  DAELMESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSGQANSYNRGCQIITR 116
           D +LM +E SRRVL+ QK+YI Y+TLRRDMVPC KPGASYY+C SGQANSY+RGC  ITR
Sbjct: 44  DEDLMPTEISRRVLMAQKRYIGYETLRRDMVPCQKPGASYYDCRSGQANSYSRGCDTITR 103

Query: 117 CAR 119
           CAR
Sbjct: 104 CAR 106

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK37|RLF24_ARATH Protein RALF-like 24 OS=Arabidopsis thaliana GN=RALFL24 PE=3 SV=1

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 45/57 (78%), Positives = 52/57 (91%)

Query: 63  SESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSGQANSYNRGCQIITRCAR 119
           SE SRRV++M+K+YISY+TLRRDMVPC KPGASYY C SGQAN+YNRGC +ITRCAR
Sbjct: 55  SEISRRVMMMRKQYISYETLRRDMVPCQKPGASYYACRSGQANAYNRGCSVITRCAR 111

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q945T0|RALF_TOBAC Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/109 (42%), Positives = 65/109 (59%), Gaps = 9/109 (8%)

Query: 12  LFTAAVFLQICNGVSVLGSEIDVNYVMPQSQSQRVCSKSIEDCFTDAEL--MESESSRRV 69
           +   A F+ +    +  G     ++VMP ++S   C  SI +C  + E   ++SES+RR+
Sbjct: 11  VLIGAFFISM----AAAGDSGAYDWVMP-ARSGGGCKGSIGECIAEEEEFELDSESNRRI 65

Query: 70  LVMQKKYISYDTLRRDMVPCDKPGASYYECHSG-QANSYNRGCQIITRC 117
           L   KKYISY  L+++ VPC + GASYY C  G QAN Y+RGC  ITRC
Sbjct: 66  LA-TKKYISYGALQKNSVPCSRRGASYYNCKPGAQANPYSRGCSAITRC 113

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases. Prevents root growth and seedling development in heterologous system.

Nicotiana tabacum (taxid: 4097)

>sp|Q8L9P8|RLF33_ARATH Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/78 (52%), Positives = 51/78 (65%), Gaps = 6/78 (7%)

Query: 47  CSKSIEDC-FTDAEL---MESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSG 102
           C+ +I +C  + AE    M+SE +RR+L   K YISY  LRR+ VPC + GASYY C  G
Sbjct: 40  CNGTIAECSLSTAEEEFEMDSEINRRILATTK-YISYGALRRNTVPCSRRGASYYNCRRG 98

Query: 103 -QANSYNRGCQIITRCAR 119
            QAN Y+RGC  ITRC R
Sbjct: 99  AQANPYSRGCSAITRCRR 116

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MA62|RLF22_ARATH Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 43/60 (71%), Gaps = 2/60 (3%)

Query: 61  MESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSG-QANSYNRGCQIITRCAR 119
            +S+ SRR+L  QKKYISY  +RR+ VPC + GASYY C  G QAN Y+RGC  ITRC R
Sbjct: 61  FDSDISRRILA-QKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRCRR 119

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRY3|RLF1_ARATH Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 3/73 (4%)

Query: 47  CSKSIEDCF-TDAELMESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSG-QA 104
           C  SI +C   + E M+SE +RR+L    KYISY +L+R+ VPC + GASYY C +G QA
Sbjct: 47  CHGSIAECIGAEEEEMDSEINRRILAT-TKYISYQSLKRNSVPCSRRGASYYNCQNGAQA 105

Query: 105 NSYNRGCQIITRC 117
           N Y+RGC  I RC
Sbjct: 106 NPYSRGCSKIARC 118

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases. Mostly active in roots. Prevents plant growth (e.g. root and leaf length).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUS7|RLF23_ARATH Rapid alkalinization factor 23 OS=Arabidopsis thaliana GN=RALF23 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 42/59 (71%), Gaps = 2/59 (3%)

Query: 62  ESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSG-QANSYNRGCQIITRCAR 119
           +SE +RR+L   ++YISY  LRR+ +PC + GASYY C  G QAN Y+RGC  ITRC R
Sbjct: 80  DSEINRRILAT-RRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 137

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity). Regulates negatively brassinolide (BL)-mediated signaling pathway (e.g. BL-induced hypocotyl elongation and branching limitation).

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NME6|RLF19_ARATH Protein RALF-like 19 OS=Arabidopsis thaliana GN=RALFL19 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 42/61 (68%), Gaps = 1/61 (1%)

Query: 60  LMESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHS-GQANSYNRGCQIITRCA 118
           LM+SE++RR L  ++ YISY  LR++ VPC + G SYY+C    +AN Y RGC +IT C 
Sbjct: 47  LMDSETNRRQLAARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHCY 106

Query: 119 R 119
           R
Sbjct: 107 R 107

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZA0|RLF4_ARATH Protein RALF-like 4 OS=Arabidopsis thaliana GN=RALFL4 PE=3 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 41/61 (67%), Gaps = 1/61 (1%)

Query: 60  LMESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSGQANS-YNRGCQIITRCA 118
           LM+SE++RR L   ++YI YD L+++ VPC + G SYY+C   + N+ Y RGC  IT C 
Sbjct: 47  LMDSETNRRQLARGRRYIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHCY 106

Query: 119 R 119
           R
Sbjct: 107 R 107

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|O23262|RLF32_ARATH Protein RALF-like 32 OS=Arabidopsis thaliana GN=RALFL32 PE=3 SV=1

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 19/124 (15%)

Query: 5   EVINVRILFTAAVFLQICNGVSVLGSEIDVNYVMPQSQSQRVCSKSIEDCFTDAE----- 59
           E+   RI  T  +F  +C         + + +V  ++ S  +C+ S+ +C +  E     
Sbjct: 2   EIKPSRIFSTITIFF-LC---------LLLAHVTSKASSSSLCNGSVAECSSMVETEEMS 51

Query: 60  -LMESESSRRVLVMQKKYISYDTLRRDMVPCD--KPGASY-YECHSGQANSYNRGCQIIT 115
            +MES SS+R+   Q   +SY  LRR+   CD  K G SY  +C    +N Y+RGC    
Sbjct: 52  VIMESWSSQRLTEEQAHKLSYGALRRNQPACDGGKRGESYSTQCLPPPSNPYSRGCSKHY 111

Query: 116 RCAR 119
           RC R
Sbjct: 112 RCGR 115

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
255563604	114	RALFL33, putative [Ricinus communis] gi|	0.756	0.815	0.66	2e-29
357462813	135	Rapid alkalinization factor preproprotei	0.951	0.866	0.515	3e-29
356540101	122	PREDICTED: uncharacterized protein LOC10	0.943	0.950	0.528	3e-28
359806264	122	uncharacterized protein LOC100793523 pre	0.943	0.950	0.504	5e-27
255638502	128	unknown [Glycine max]	0.788	0.757	0.557	1e-24
356512443	128	PREDICTED: uncharacterized protein LOC10	0.796	0.765	0.552	2e-24
48766856	152	rapid alkalinization factor 1 [Solanum c	0.829	0.671	0.531	4e-24
297800884	112	hypothetical protein ARALYDRAFT_493518 [	0.512	0.562	0.761	2e-22
224055835	66	predicted protein [Populus trichocarpa]	0.512	0.954	0.746	4e-22
359477875	131	PREDICTED: uncharacterized protein LOC10	0.821	0.770	0.522	2e-21

>gi|255563604|ref|XP_002522804.1| RALFL33, putative [Ricinus communis] gi|223538042|gb|EEF39655.1| RALFL33, putative [Ricinus communis]

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/100 (66%), Positives = 80/100 (80%), Gaps = 7/100 (7%)

Query: 19  LQICNGVSVLG-SEIDVNYVMPQSQSQRVCSKSIEDCFTDAELMESESSRRVLVMQKKYI 77
             ICNGVSV G    +V+ +M     +RVC+K I DCF + E MESE SRRVLVMQKKYI
Sbjct: 18  FTICNGVSVSGFKNTEVDAIM-----RRVCTKKIGDCFEEPE-MESEISRRVLVMQKKYI 71

Query: 78  SYDTLRRDMVPCDKPGASYYECHSGQANSYNRGCQIITRC 117
           SY+TL+RDMVPCDKPGASYY+CH+G+AN Y+RGC++ITRC
Sbjct: 72  SYETLKRDMVPCDKPGASYYDCHAGEANPYSRGCEMITRC 111

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462813|ref|XP_003601688.1| Rapid alkalinization factor preproprotein [Medicago truncatula] gi|355490736|gb|AES71939.1| Rapid alkalinization factor preproprotein [Medicago truncatula]

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 68/132 (51%), Positives = 91/132 (68%), Gaps = 15/132 (11%)

Query: 1   MSKTEVINVRILFTAAVF---LQICNGVSVLGSEIDVNYVMPQSQ-------SQRVCSKS 50
           MS+    +   LF   +F   L IC   S+L + +D+N ++  S+       ++RVC+K+
Sbjct: 1   MSQLRFTSTIFLFLTLLFHAYLPICT--SLLPTTVDLN-LLKHSEINDAVVITKRVCTKT 57

Query: 51  IEDCFTDAELM--ESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSGQANSYN 108
           I +C TD E+M  +SES+RRVL MQKKYISYDTL+RDMVPCD+PGASYY CH  QAN Y+
Sbjct: 58  IGECLTDPEMMMMDSESNRRVLAMQKKYISYDTLKRDMVPCDRPGASYYNCHRRQANPYS 117

Query: 109 RGCQIITRCARG 120
           RGC++IT C RG
Sbjct: 118 RGCEVITACVRG 129

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540101|ref|XP_003538529.1| PREDICTED: uncharacterized protein LOC100787736 [Glycine max]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 64/121 (52%), Positives = 85/121 (70%), Gaps = 5/121 (4%)

Query: 1   MSKTEVINVRILFTAAVFLQICNGVSVLGSEIDVNYVMPQSQSQRVCSKSIEDCFTDAEL 60
           MS+   I++  L  A V    CNG+      +D+N+      ++RVC+KSI +C +  E 
Sbjct: 1   MSQPRFISMISLCLALVLFYTCNGLPF----VDLNFHEVDVMTKRVCTKSIGECLSLTEP 56

Query: 61  -MESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSGQANSYNRGCQIITRCAR 119
            M+SE++RRVL MQKKYISYDTL+RDMVPCD+ GASYY CH+ +AN YNRGC++IT CAR
Sbjct: 57  EMDSETNRRVLAMQKKYISYDTLKRDMVPCDRAGASYYNCHAIRANPYNRGCEVITACAR 116

Query: 120 G 120
           G
Sbjct: 117 G 117

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806264|ref|NP_001241215.1| uncharacterized protein LOC100793523 precursor [Glycine max] gi|255637381|gb|ACU19019.1| unknown [Glycine max]

 Score =  124 bits (312), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 61/121 (50%), Positives = 82/121 (67%), Gaps = 5/121 (4%)

Query: 1   MSKTEVINVRILFTAAVFLQICNGVSVLGSEIDVNYVMPQSQSQRVCSKSIEDCFTDAEL 60
           MS+   I++  L         C G+      +D+N+      ++RVC+KSI +C +  E 
Sbjct: 1   MSQPRFISMISLCLTLFLFHTCTGLPF----VDLNFHEVDVMTKRVCTKSIGECLSLTEP 56

Query: 61  -MESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSGQANSYNRGCQIITRCAR 119
            M+SE++RRVL MQKKYISYDTL+RDMVPCD+ GASYY CH+ +AN YNRGC++IT CAR
Sbjct: 57  EMDSETNRRVLAMQKKYISYDTLKRDMVPCDRAGASYYNCHAIRANPYNRGCEVITACAR 116

Query: 120 G 120
           G
Sbjct: 117 G 117

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638502|gb|ACU19560.1| unknown [Glycine max]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/104 (55%), Positives = 76/104 (73%), Gaps = 7/104 (6%)

Query: 21  ICNGVSVLGSEIDVNYVMPQSQSQRVCSKSIEDCFTDAELMESESSRRVL--VMQKKYIS 78
           ICNG+ V    +D+N       ++RVC+KSI +C  + E M+SES+RRVL  V   KYIS
Sbjct: 26  ICNGLLV----VDLNLSETAVMTKRVCTKSIGECLAEPE-MDSESNRRVLEGVQHIKYIS 80

Query: 79  YDTLRRDMVPCDKPGASYYECHSGQANSYNRGCQIITRCARGIK 122
           Y+TL+RDMVPCD+ GASYY CH+  AN YNRGC++IT CARG++
Sbjct: 81  YETLKRDMVPCDRAGASYYNCHARPANPYNRGCEVITECARGVQ 124

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512443|ref|XP_003524928.1| PREDICTED: uncharacterized protein LOC100817014 [Glycine max]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 76/105 (72%), Gaps = 7/105 (6%)

Query: 21  ICNGVSVLGSEIDVNYVMPQSQSQRVCSKSIEDCFTDAELMESESSRRVL--VMQKKYIS 78
           ICNG+ V    +D+N       ++RVC+KSI +C  + E M+SES+RRVL  V   KYIS
Sbjct: 26  ICNGLLV----VDLNLSETAVMTKRVCTKSIGECLAEPE-MDSESNRRVLEGVQHIKYIS 80

Query: 79  YDTLRRDMVPCDKPGASYYECHSGQANSYNRGCQIITRCARGIKN 123
           Y+TL+RDMVPCD+ GASYY CH+  AN YNRGC++IT CARG++ 
Sbjct: 81  YETLKRDMVPCDRAGASYYNCHARPANPYNRGCEVITGCARGVQG 125

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|48766856|gb|AAR00325.2| rapid alkalinization factor 1 [Solanum chacoense]

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 59/111 (53%), Positives = 82/111 (73%), Gaps = 9/111 (8%)

Query: 19  LQICNGVSVLG--SEIDVNYVMPQSQSQRVCSKSIEDC---FTDAELMESESSRRVLVMQ 73
           ++ C+GVSVL   S  D N+ +     +R CS+ +++C     + +LM+SES+RRVL+MQ
Sbjct: 42  MRFCSGVSVLDLKSVKDSNFNL---MGKRGCSEKLQECSEMVGEEDLMDSESNRRVLLMQ 98

Query: 74  KKYISYDTLRRDMVPCDKPGASYYECHS-GQANSYNRGCQIITRCARGIKN 123
           KKYISY TL+RD+VPC+ PGASYY C + G AN+YNRGC+IITRCAR + +
Sbjct: 99  KKYISYGTLKRDLVPCNTPGASYYNCKAPGAANNYNRGCEIITRCARDVSD 149

Source: Solanum chacoense

Species: Solanum chacoense

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800884|ref|XP_002868326.1| hypothetical protein ARALYDRAFT_493518 [Arabidopsis lyrata subsp. lyrata] gi|297314162|gb|EFH44585.1| hypothetical protein ARALYDRAFT_493518 [Arabidopsis lyrata subsp. lyrata]

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 55/63 (87%)

Query: 57  DAELMESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSGQANSYNRGCQIITR 116
           D +LM +E SRRVL+ QK+YI Y+TLRRDMVPC KPGASYY+C SGQANSYNRGC+ ITR
Sbjct: 43  DEDLMPTEISRRVLMAQKRYIGYETLRRDMVPCQKPGASYYDCRSGQANSYNRGCETITR 102

Query: 117 CAR 119
           CAR
Sbjct: 103 CAR 105

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055835|ref|XP_002298677.1| predicted protein [Populus trichocarpa] gi|222845935|gb|EEE83482.1| predicted protein [Populus trichocarpa]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 47/63 (74%), Positives = 58/63 (92%)

Query: 61  MESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSGQANSYNRGCQIITRCARG 120
           MESE SRRVL+M KKYISY+TLRRD+VPCDKPGASYY+C++ QA+ YNRGC++ITRCAR 
Sbjct: 1   MESEISRRVLLMHKKYISYETLRRDLVPCDKPGASYYDCNARQAHPYNRGCEVITRCARS 60

Query: 121 IKN 123
           +K+
Sbjct: 61  VKD 63

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477875|ref|XP_003632037.1| PREDICTED: uncharacterized protein LOC100250260 isoform 1 [Vitis vinifera] gi|359477877|ref|XP_003632038.1| PREDICTED: uncharacterized protein LOC100250260 isoform 2 [Vitis vinifera]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/109 (52%), Positives = 77/109 (70%), Gaps = 8/109 (7%)

Query: 21  ICNG---VSVLG-SEIDVNYVMPQSQSQRVCSKSIEDCFTDAELMESE-SSRRVLVMQKK 75
           ICNG   VSV+G + +  N +  ++  +R C   +  C  +    E E SSRRVLVMQKK
Sbjct: 22  ICNGLVSVSVVGLNSVKNNEI--EAIPKRDCGGEVGQCLGEEMDWEWEISSRRVLVMQKK 79

Query: 76  YISYDTLRRDMVPCDKPGASYYECH-SGQANSYNRGCQIITRCARGIKN 123
           YISY+TL++DM+PC +PGASYY C  SG+AN YNRGC++IT CARG+++
Sbjct: 80  YISYETLKKDMIPCARPGASYYNCRASGEANPYNRGCEVITGCARGVRD 128

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
TAIR|locus:505006366	118	RALFL24 "ralf-like 24" [Arabid	0.495	0.516	0.770	3.8e-23
TAIR|locus:2129261	113	RALFL31 "ralf-like 31" [Arabid	0.512	0.557	0.746	1.3e-22
TAIR|locus:2079787	119	RALFL22 "ralf-like 22" [Arabid	0.902	0.932	0.449	3.6e-18
UNIPROTKB|Q945T0	115	RALF "Rapid alkalinization fac	0.658	0.704	0.511	1.4e-16
TAIR|locus:2024730	120	RALF1 "rapid alkalinization fa	0.569	0.583	0.520	5.4e-15
TAIR|locus:2130724	116	RALFL33 "ralf-like 33" [Arabid	0.585	0.620	0.525	6.9e-15
TAIR|locus:2089323	138	RALF23 "rapid alkalinization f	0.471	0.420	0.566	4.9e-14
TAIR|locus:504955964	110	RALFL19 "ralf-like 19" [Arabid	0.487	0.545	0.508	7.1e-13
TAIR|locus:2032195	110	RALFL4 "ralf-like 4" [Arabidop	0.487	0.545	0.475	5e-12
TAIR|locus:2129341	117	RALFL32 "ralf-like 32" [Arabid	0.682	0.717	0.354	3.3e-08

TAIR|locus:505006366 RALFL24 "ralf-like 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 47/61 (77%), Positives = 55/61 (90%)

Query:    59 ELMESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSGQANSYNRGCQIITRCA 118
             E+M SE SRRV++M+K+YISY+TLRRDMVPC KPGASYY C SGQAN+YNRGC +ITRCA
Sbjct:    51 EMMPSEISRRVMMMRKQYISYETLRRDMVPCQKPGASYYACRSGQANAYNRGCSVITRCA 110

Query:   119 R 119
             R
Sbjct:   111 R 111

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:2129261 RALFL31 "ralf-like 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 47/63 (74%), Positives = 54/63 (85%)

Query:    57 DAELMESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSGQANSYNRGCQIITR 116
             D +LM +E SRRVL+ QK+YI Y+TLRRDMVPC KPGASYY+C SGQANSY+RGC  ITR
Sbjct:    44 DEDLMPTEISRRVLMAQKRYIGYETLRRDMVPCQKPGASYYDCRSGQANSYSRGCDTITR 103

Query:   117 CAR 119
             CAR
Sbjct:   104 CAR 106

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:2079787 RALFL22 "ralf-like 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 53/118 (44%), Positives = 68/118 (57%)

Query:     8 NVRILFTAAVFLQIC-NGVSVLGSEID-VNYVMPQSQSQ-RVCSKSIEDCFTDAELMESE 64
             N R ++     L I  + V   G   D +++V   S S    C+ SI +C  + E ME +
Sbjct:     3 NTRAIYAVIAILAIVISAVESTGDFGDSLDFVRAGSSSLFSGCTGSIAECIAEEEEMEFD 62

Query:    65 S--SRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSG-QANSYNRGCQIITRCAR 119
             S  SRR+L  QKKYISY  +RR+ VPC + GASYY C  G QAN Y+RGC  ITRC R
Sbjct:    63 SDISRRILA-QKKYISYGAMRRNSVPCSRRGASYYNCQRGAQANPYSRGCSTITRCRR 119

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

UNIPROTKB|Q945T0 RALF "Rapid alkalinization factor" [Nicotiana tabacum (taxid:4097)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 44/86 (51%), Positives = 57/86 (66%)

Query:    35 NYVMPQSQSQRVCSKSIEDCFTDAELME--SESSRRVLVMQKKYISYDTLRRDMVPCDKP 92
             ++VMP ++S   C  SI +C  + E  E  SES+RR+L   KKYISY  L+++ VPC + 
Sbjct:    30 DWVMP-ARSGGGCKGSIGECIAEEEEFELDSESNRRILAT-KKYISYGALQKNSVPCSRR 87

Query:    93 GASYYECHSG-QANSYNRGCQIITRC 117
             GASYY C  G QAN Y+RGC  ITRC
Sbjct:    88 GASYYNCKPGAQANPYSRGCSAITRC 113

GO:0004871 "signal transducer activity" evidence=IDA

GO:0005179 "hormone activity" evidence=IDA

GO:0019722 "calcium-mediated signaling" evidence=IDA

TAIR|locus:2024730 RALF1 "rapid alkalinization factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 38/73 (52%), Positives = 49/73 (67%)

Query:    47 CSKSIEDCF-TDAELMESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSG-QA 104
             C  SI +C   + E M+SE +RR+L   K YISY +L+R+ VPC + GASYY C +G QA
Sbjct:    47 CHGSIAECIGAEEEEMDSEINRRILATTK-YISYQSLKRNSVPCSRRGASYYNCQNGAQA 105

Query:   105 NSYNRGCQIITRC 117
             N Y+RGC  I RC
Sbjct:   106 NPYSRGCSKIARC 118

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0019722 "calcium-mediated signaling" evidence=IDA

TAIR|locus:2130724 RALFL33 "ralf-like 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 41/78 (52%), Positives = 51/78 (65%)

Query:    47 CSKSIEDC-FTDAEL---MESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSG 102
             C+ +I +C  + AE    M+SE +RR+L   K YISY  LRR+ VPC + GASYY C  G
Sbjct:    40 CNGTIAECSLSTAEEEFEMDSEINRRILATTK-YISYGALRRNTVPCSRRGASYYNCRRG 98

Query:   103 -QANSYNRGCQIITRCAR 119
              QAN Y+RGC  ITRC R
Sbjct:    99 AQANPYSRGCSAITRCRR 116

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2089323 RALF23 "rapid alkalinization factor 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 34/60 (56%), Positives = 43/60 (71%)

Query:    61 MESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSG-QANSYNRGCQIITRCAR 119
             M+SE +RR+L   ++YISY  LRR+ +PC + GASYY C  G QAN Y+RGC  ITRC R
Sbjct:    79 MDSEINRRILAT-RRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 137

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP

GO:0045926 "negative regulation of growth" evidence=IMP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:504955964 RALFL19 "ralf-like 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 31/61 (50%), Positives = 42/61 (68%)

Query:    60 LMESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSGQ-ANSYNRGCQIITRCA 118
             LM+SE++RR L  ++ YISY  LR++ VPC + G SYY+C   + AN Y RGC +IT C 
Sbjct:    47 LMDSETNRRQLAARRSYISYGALRKNNVPCSRRGRSYYDCKKRKRANPYRRGCSVITHCY 106

Query:   119 R 119
             R
Sbjct:   107 R 107

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:2032195 RALFL4 "ralf-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 29/61 (47%), Positives = 41/61 (67%)

Query:    60 LMESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSGQANS-YNRGCQIITRCA 118
             LM+SE++RR L   ++YI YD L+++ VPC + G SYY+C   + N+ Y RGC  IT C 
Sbjct:    47 LMDSETNRRQLARGRRYIGYDALKKNNVPCSRRGRSYYDCKKRRRNNPYRRGCSAITHCY 106

Query:   119 R 119
             R
Sbjct:   107 R 107

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2129341 RALFL32 "ralf-like 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 33/93 (35%), Positives = 49/93 (52%)

Query:    36 YVMPQSQSQRVCSKSIEDCFTDAE------LMESESSRRVLVMQKKYISYDTLRRDMVPC 89
             +V  ++ S  +C+ S+ +C +  E      +MES SS+R+   Q   +SY  LRR+   C
Sbjct:    23 HVTSKASSSSLCNGSVAECSSMVETEEMSVIMESWSSQRLTEEQAHKLSYGALRRNQPAC 82

Query:    90 D--KPGASYY-ECHSGQANSYNRGCQIITRCAR 119
             D  K G SY  +C    +N Y+RGC    RC R
Sbjct:    83 DGGKRGESYSTQCLPPPSNPYSRGCSKHYRCGR 115

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2HIM9	RLF31_ARATH	No assigned EC number	0.7460	0.5121	0.5575	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.7__2951__AT4G13950.1 annotation not avaliable (112 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	123
pfam05498	66	pfam05498, RALF, Rapid ALkalinization Factor (RALF	7e-23
PLN03221	137	PLN03221, PLN03221, rapid alkalinization factor 23	2e-17
PLN03222	119	PLN03222, PLN03222, rapid alkalinization factor 23	2e-16

>gnl|CDD|218610 pfam05498, RALF, Rapid ALkalinization Factor (RALF)

 Score = 84.0 bits (208), Expect = 7e-23
 Identities = 34/64 (53%), Positives = 42/64 (65%), Gaps = 2/64 (3%)

Query: 57  DAELMESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSG-QANSYNRGCQIIT 115
              +M+S + RRVL   ++YISY  LRR+ VPC + GASYY C  G  AN Y+RGC  IT
Sbjct: 4   ALVVMDSPAGRRVL-AARRYISYGALRRNSVPCSRRGASYYNCKPGAPANPYSRGCSAIT 62

Query: 116 RCAR 119
           RC R
Sbjct: 63  RCRR 66

RALF, a 5-kDa ubiquitous polypeptide in plants, arrests root growth and development. Length = 66

>gnl|CDD|178760 PLN03221, PLN03221, rapid alkalinization factor 23; Provisional

 Score = 72.0 bits (176), Expect = 2e-17
 Identities = 34/60 (56%), Positives = 43/60 (71%), Gaps = 2/60 (3%)

Query: 61  MESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSG-QANSYNRGCQIITRCAR 119
           M+SE +RR+L   ++YISY  LRR+ +PC + GASYY C  G QAN Y+RGC  ITRC R
Sbjct: 79  MDSEINRRILAT-RRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR 137

Length = 137

>gnl|CDD|178761 PLN03222, PLN03222, rapid alkalinization factor 23-like protein; Provisional

 Score = 69.4 bits (169), Expect = 2e-16
 Identities = 41/78 (52%), Positives = 51/78 (65%), Gaps = 6/78 (7%)

Query: 47  CSKSIEDC-FTDAEL---MESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHSG 102
           C+ +I +C  + AE    M+SE +RR+L    KYISY  LRR+ VPC + GASYY C  G
Sbjct: 43  CNGTIAECSLSTAEEEFEMDSEINRRILAT-TKYISYGALRRNTVPCSRRGASYYNCRRG 101

Query: 103 -QANSYNRGCQIITRCAR 119
            QAN Y+RGC  ITRC R
Sbjct: 102 AQANPYSRGCSAITRCRR 119

Length = 119

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	123
PLN03222	119	rapid alkalinization factor 23-like protein; Provi	100.0
PLN03221	137	rapid alkalinization factor 23; Provisional	100.0
PF05498	66	RALF: Rapid ALkalinization Factor (RALF) ; InterPr	99.93

>PLN03222 rapid alkalinization factor 23-like protein; Provisional

Probab=100.00  E-value=4.6e-36  Score=221.48  Aligned_cols=90  Identities=44%  Similarity=0.870  Sum_probs=76.1

Q ss_pred             ccccCccccccccccCCCCCCcccccchhhch----hhhhcchhhhhhhhhcccceeecCCCCCCCCCCCCCCCCCCCCC
Q 033245           25 VSVLGSEIDVNYVMPQSQSQRVCSKSIEDCFT----DAELMESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECH  100 (123)
Q Consensus        25 ~s~~~~~~~~~~~~~~~~~~~~C~Gsi~EC~~----ee~~m~se~~RR~L~~~~~yIsYgAL~~d~vpC~~~G~sY~nC~  100 (123)
                      |...+..|..+|++    ....|+|+++||++    ||++||||++||+|+. ++||||+||++|++||+++|+|||||+
T Consensus        25 ~~~~~~~~~~~~~~----~~~~C~Gsi~EC~~~~~e~e~~mdSe~sRR~L~~-~rYISYgALrrd~vPCsrrG~SYynC~   99 (119)
T PLN03222         25 VTSQSTGFSGDFMP----IDSKCNGTIAECSLSTAEEEFEMDSEINRRILAT-TKYISYGALRRNTVPCSRRGASYYNCR   99 (119)
T ss_pred             hhcccccccccccC----CCCcCCCCHHHhhcccccchhccccHHHHHHHhh-cCeecHHHhcCCCCCCCCCCCCccccC
Confidence            33334456666763    33569999999985    3447999999999984 699999999999999999999999999


Q ss_pred             CC-CCCCCCCCCcccccccC
Q 033245          101 SG-QANSYNRGCQIITRCAR  119 (123)
Q Consensus       101 p~-paNpYsRGCs~i~rCrr  119 (123)
                      ++ |+|||+|||++||||||
T Consensus       100 ~~~~ANPY~RGCs~ITrCrR  119 (119)
T PLN03222        100 RGAQANPYSRGCSAITRCRR  119 (119)
T ss_pred             CCCCCCCCCCCchhhccccC
Confidence            85 99999999999999997

>PLN03221 rapid alkalinization factor 23; Provisional

Probab=100.00  E-value=2.6e-35  Score=221.62  Aligned_cols=105  Identities=40%  Similarity=0.795  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHh---ccccccCccccccccccCCCCCCcccccchhhch---------------h---hhhcchhhhhh
Q 033245           10 RILFTAAVFLQIC---NGVSVLGSEIDVNYVMPQSQSQRVCSKSIEDCFT---------------D---AELMESESSRR   68 (123)
Q Consensus        10 ~~~~~~~~~~~ic---~~~s~~~~~~~~~~~~~~~~~~~~C~Gsi~EC~~---------------e---e~~m~se~~RR   68 (123)
                      -+||+.+|+|.+=   -+||..+-++..+|.    +....|+|+++||++               |   |++||||++||
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~C~GsiaEC~~~~~~~~d~e~~~g~~~~~~e~~MdSE~sRR   86 (137)
T PLN03221         11 AAIFAILLILAVHFWSVAVSSQSIEFAGDFP----PFETECRGTIAECSVSAALGDDGDLFYGGGEMGAEFEMDSEINRR   86 (137)
T ss_pred             HHHHHHHHHHHHHHHhheeeccccccccccc----CCCCcccCCHHHHhhhhccccccccccccchhhhhhhcccHHHHH
Confidence            4677777766553   445554555555544    244579999999971               1   34799999999


Q ss_pred             hhhcccceeecCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCcccccccC
Q 033245           69 VLVMQKKYISYDTLRRDMVPCDKPGASYYECHSG-QANSYNRGCQIITRCAR  119 (123)
Q Consensus        69 ~L~~~~~yIsYgAL~~d~vpC~~~G~sY~nC~p~-paNpYsRGCs~i~rCrr  119 (123)
                      +|+ +++||||+||++|++||+++|+|||||.++ |+|||+|||++||||||
T Consensus        87 ~L~-~~rYISYgALrrd~vPCsrrG~SYynC~~~~pANPY~RGCs~ITRCrR  137 (137)
T PLN03221         87 ILA-TRRYISYGALRRNTIPCSRRGASYYNCRRGAQANPYSRGCSAITRCRR  137 (137)
T ss_pred             HHh-cCCccCHHHhccCCCCCCCCCCCccccCCCCCCCCCCCCcccccccCC
Confidence            997 478999999999999999999999999985 99999999999999997

>PF05498 RALF: Rapid ALkalinization Factor (RALF) ; InterPro: IPR008801 RALF, a 5 kDa ubiquitous polypeptide in plants, arrests root growth and development

Probab=99.93  E-value=2.9e-26  Score=154.29  Aligned_cols=62  Identities=56%  Similarity=1.071  Sum_probs=56.5

Q ss_pred             hhhhcchhhhhhhhhcccceeecCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCcccccccC
Q 033245           57 DAELMESESSRRVLVMQKKYISYDTLRRDMVPCDKPGASYYECHS-GQANSYNRGCQIITRCAR  119 (123)
Q Consensus        57 ee~~m~se~~RR~L~~~~~yIsYgAL~~d~vpC~~~G~sY~nC~p-~paNpYsRGCs~i~rCrr  119 (123)
                      ++++|+||++||+|+. ++||+|+||++|.+||.++|.+|++|.+ +|+|||+|||++|+||||
T Consensus         4 ~~~~~~s~~~~R~~a~-~~yIsYgaL~~~~~pc~~~g~~~~~c~~~~paNpY~RGC~~~~rCrr   66 (66)
T PF05498_consen    4 EEVVMESEASRRILAA-RRYISYGALRRDRVPCSPRGCSYYNCCPRQPANPYSRGCSKITRCRR   66 (66)
T ss_pred             HHhhhhhHHHHHHHhc-CCeecchhccCCCCCCCcccCCCcccCCCCCCCCCCCCCCccccCCC
Confidence            4558999999999985 4999999999999999999999999854 599999999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00