Citrus Sinensis ID: 033262

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120---
Protein Sequence
MGNCIRHQHQPSMQWAGDDWGAVVESASNHRTEEAKQEGLLLGGDKVGFITSPTSAASSTEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNVSSSNDRYHETNQRSWRPALQSIPEVN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHccccccHHHHHHHHHHcccccccccccccccccccEEEEEEEHHHHHHHHHccccccccHHHHHHHHHHHcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHcccccccccHHHHHcccccccccccccccccccccccEEEEEEcHHHHHHHHHccccccccHHHHHHHHHHHccccccccccHHccccccHHHccccccc
Coil and Loop (DISEMBL)
mgncirhqhqpsmqwagdDWGAVVESASNHRTEEAKQeglllggdkvgfitsptsaasstEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVnvsssndryhetnqrswrpalqsipevn
Flexible Loop (DISEMBL)
mgncirhqhqpsmqwagdDWGAVVESASNHRTEEakqeglllggdKVGFITsptsaassteikIKITKKQLEELLGKADVKGLSVQQVLAHLInvnvsssndryhetnqrswrpalqsipevn
Low Complexity Region (SEG)
MGNCIRHQHQPSMQWAGDDWGAVVESASNHRTEEAKQEGLLLGGDKVGFITSPTSAASSteikikitkkqleellGKADVKGLSVQQVLAHLINVNVSSSNDRYHETNQRSWRPALQSIPEVN
Disordered region (IsUnstruct)
******************DWGAV****************LLLGGDKVGFIT**********IKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNV**************************
Disordered Region (DISOPRED)
MGNC**********************************************************KIKITKKQLEE*************QVLAHLINVN************QRSWRPALQSIP***
Disordered Region (DISEMBL)
*************QWAGDDWGAVVESASNHRTEEAKQEGLLLGGDKVGFITSPTSAASSTEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNVSSS**********SWRPALQSIPEVN
Disordered Region (DISPRO)
**********************************************************STEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNVS*************WRPA*Q******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGNCIRHQHQPSMQWAGDDWGAVVESASNHRTEEAKQEGLLLGGDKVGFITSPTSAASSTEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNVSSSNDRYHETNQRSWRPALQSIPEVN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
255563885	114	conserved hypothetical protein [Ricinus	0.894	0.964	0.576	7e-27
225460987	125	PREDICTED: uncharacterized protein LOC10	0.934	0.92	0.496	5e-24
255563889	130	conserved hypothetical protein [Ricinus	0.918	0.869	0.485	1e-20
255554901	127	conserved hypothetical protein [Ricinus	0.967	0.937	0.441	3e-16
388520171	100	unknown [Lotus japonicus]	0.813	1.0	0.459	2e-15
357459613	97	hypothetical protein MTR_3g051610 [Medic	0.788	1.0	0.463	5e-15
357459601	99	hypothetical protein MTR_3g051530 [Medic	0.804	1.0	0.439	1e-14
297834972	116	hypothetical protein ARALYDRAFT_898447 [	0.902	0.956	0.414	1e-14
356567348	101	PREDICTED: uncharacterized protein LOC10	0.780	0.950	0.414	3e-14
224076238	123	predicted protein [Populus trichocarpa]	0.910	0.910	0.365	3e-14

>gi|255563885|ref|XP_002522942.1| conserved hypothetical protein [Ricinus communis] gi|223537754|gb|EEF39372.1| conserved hypothetical protein [Ricinus communis]

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 72/125 (57%), Positives = 86/125 (68%), Gaps = 15/125 (12%)

Query: 1   MGNCIRHQHQPSMQWAGDDWGAVVES----ASNHRTEEAKQEGLLLGGDKVGFITSPTSA 56
           MGNC+R +   SMQW GDDWG+ +      +SN R EE K  GLLLG DK   I+S T  
Sbjct: 1   MGNCLRRES--SMQWGGDDWGSPLPDDRFFSSNTRQEEEK--GLLLGEDKGSTISSAT-- 54

Query: 57  ASSTEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNVSSSNDRYHETNQRSWRPAL 116
            +STE+KIKITKKQLEELLG+ D+K LS++QVLA L+ V      D   ET+QRSWRP L
Sbjct: 55  VTSTEVKIKITKKQLEELLGRVDMKELSIEQVLAQLMKV-----GDPSFETHQRSWRPNL 109

Query: 117 QSIPE 121
           QSIPE
Sbjct: 110 QSIPE 114

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460987|ref|XP_002278220.1| PREDICTED: uncharacterized protein LOC100260689 [Vitis vinifera]

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 66/133 (49%), Positives = 91/133 (68%), Gaps = 18/133 (13%)

Query: 1   MGNCIRHQHQPSMQWAGDDWGAVVESA----------SNHRTEEAKQEGLLLGGDKVGFI 50
           MGNC+RH+  P MQWAG+DWG++              S+ +  + +++ LL         
Sbjct: 1   MGNCLRHE--PPMQWAGEDWGSLAPPTHFSGDTHHEISSDKAMKGEKDSLLKENPGFSSS 58

Query: 51  TSPTSAASSTEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNVSSSNDRYHETNQR 110
           +S +S++++TE+K+KI+KKQLEELLGK DV+GL+V QVL HL+NV     +DR+ ET QR
Sbjct: 59  SSSSSSSTTTEVKVKISKKQLEELLGKVDVQGLTVHQVLQHLMNV-----SDRF-ETEQR 112

Query: 111 SWRPALQSIPEVN 123
           SWRPALQSIPEVN
Sbjct: 113 SWRPALQSIPEVN 125

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563889|ref|XP_002522944.1| conserved hypothetical protein [Ricinus communis] gi|223537756|gb|EEF39374.1| conserved hypothetical protein [Ricinus communis]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/138 (48%), Positives = 90/138 (65%), Gaps = 25/138 (18%)

Query: 1   MGNCIRHQHQPSMQWAGDDWGA------VVESASNHRTEE----AKQEGLLLGGDKVGFI 50
           MGNC+R +   SMQW GDDWG+      +  S++ H  +E     +++GLL+G +K G  
Sbjct: 1   MGNCLRRES--SMQWGGDDWGSPAPEVQLFSSSTRHVRQENITNIEEKGLLIGDNK-GTT 57

Query: 51  TSPTSAASST-------EIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNVSSSNDR 103
            SPTSAA++        E+KIKITKKQLEELLG+ D+  LS++QVL  L+ V+ SS    
Sbjct: 58  ISPTSAAAAGATTSSCRELKIKITKKQLEELLGRVDMNELSIEQVLVQLVKVSDSS---- 113

Query: 104 YHETNQRSWRPALQSIPE 121
             ET++RSWRP LQSIPE
Sbjct: 114 -FETHRRSWRPNLQSIPE 130

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554901|ref|XP_002518488.1| conserved hypothetical protein [Ricinus communis] gi|223542333|gb|EEF43875.1| conserved hypothetical protein [Ricinus communis]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/129 (44%), Positives = 82/129 (63%), Gaps = 10/129 (7%)

Query: 1   MGNCIRHQHQPSMQ-WAGDDWGAV----VESASNHRTEEAKQEGLLLGGD---KVGFITS 52
           MGNC R     S   WAGDDWG+V    + S+ +    +  +   LLG D     GF++ 
Sbjct: 1   MGNCCRRVSSSSSVVWAGDDWGSVGQEKISSSDHSHHHDITERQRLLGEDLDMMGGFMS- 59

Query: 53  PTSAASSTEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNVSSSNDRYHETNQRSW 112
            +S++S+ E+KIKITKK+LEEL+ + D++GLS+++VLA LIN + +  N      + RSW
Sbjct: 60  -SSSSSTREVKIKITKKELEELMARVDMQGLSMEEVLASLINSSSADKNLEMECHHHRSW 118

Query: 113 RPALQSIPE 121
           +PALQSIPE
Sbjct: 119 KPALQSIPE 127

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520171|gb|AFK48147.1| unknown [Lotus japonicus]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/122 (45%), Positives = 67/122 (54%), Gaps = 22/122 (18%)

Query: 1   MGNCIRHQHQPSMQWAGDDWGAVVESASNHRTEEAKQEGLLLGGDKVGFITSPTSAASST 60
           MGNC+RH HQ S    GDD               A + G  + G   G  T+     S  
Sbjct: 1   MGNCLRHNHQYST-VGGDD-----------SPTAAAEGGCFIAGSSYGEKTN----TSYQ 44

Query: 61  EIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNVSSSNDRYHETNQRSWRPALQSIP 120
           E+KIKITKKQLE L+GK +VKGL V+++LAHL+    S   D  H    R WRPALQSIP
Sbjct: 45  EVKIKITKKQLEALVGKVEVKGLRVEEMLAHLM--EHSGQYDSLH----RPWRPALQSIP 98

Query: 121 EV 122
           EV
Sbjct: 99  EV 100

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459613|ref|XP_003600087.1| hypothetical protein MTR_3g051610 [Medicago truncatula] gi|355489135|gb|AES70338.1| hypothetical protein MTR_3g051610 [Medicago truncatula] gi|388500484|gb|AFK38308.1| unknown [Medicago truncatula]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/123 (46%), Positives = 74/123 (60%), Gaps = 26/123 (21%)

Query: 1   MGNCIRHQHQPSMQWAGDDWGAVVESASNHRTEEAKQEGLLLGGDKVGFITSPTSAASST 60
           MGNC++HQ     ++A DD     E   + +  E         GD     ++ T A ++T
Sbjct: 1   MGNCMKHQ-----KYATDD-----EDDWDFQASE---------GDSPA-KSNYTGAKATT 40

Query: 61  EIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNVSSSNDRYHETNQRSWRPALQSIP 120
           E+KIKITKKQLEELL K D+K L V+QVLA L+N     SN   +E+ QRSWRPALQSIP
Sbjct: 41  EVKIKITKKQLEELLSKVDIKELRVEQVLAQLMN----HSNG--YESLQRSWRPALQSIP 94

Query: 121 EVN 123
           E +
Sbjct: 95  EAD 97

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459601|ref|XP_003600081.1| hypothetical protein MTR_3g051530 [Medicago truncatula] gi|355489129|gb|AES70332.1| hypothetical protein MTR_3g051530 [Medicago truncatula]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/123 (43%), Positives = 76/123 (61%), Gaps = 24/123 (19%)

Query: 1   MGNCIRHQHQPSMQWAGDDWGAVVESASNHRTEEAKQEGLLLGGDKVGFITSPTSAASST 60
           MGNC+++Q   S+++A DD     +++    T  +K  G               +A ++T
Sbjct: 1   MGNCLKNQ--SSIKYATDDDEWDFQASEGDYT--SKSNG--------------AAAKTTT 42

Query: 61  EIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNVSSSNDRYHETNQRSWRPALQSIP 120
           E+KIKITKKQLEELL K D++ L V+QVLA L+N     SN   +++ QRSWRPALQSIP
Sbjct: 43  EVKIKITKKQLEELLSKVDIRELRVEQVLAQLMN----HSNG--YQSLQRSWRPALQSIP 96

Query: 121 EVN 123
           EV+
Sbjct: 97  EVD 99

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834972|ref|XP_002885368.1| hypothetical protein ARALYDRAFT_898447 [Arabidopsis lyrata subsp. lyrata] gi|297331208|gb|EFH61627.1| hypothetical protein ARALYDRAFT_898447 [Arabidopsis lyrata subsp. lyrata]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 74/128 (57%), Gaps = 17/128 (13%)

Query: 1   MGNCIRHQHQPSMQWAGDDWGAVV--ESASNHRTEEAKQEGLLLGGDKVGFITSPT-SAA 57
           MGNC+RH+ +  M WAG+DW   +  +   +H + +  ++G      K   +T  + S+ 
Sbjct: 1   MGNCLRHESE--MHWAGEDWDEFITEDEEDHHYSSKTTRDG------KTVVVTRDSKSSV 52

Query: 58  SSTEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNVSSSNDR-YHETN-QRSWRPA 115
            S EIKI++TKKQL +LL K +V  L+  Q  A     +  S N+R Y E N QR WRP 
Sbjct: 53  PSHEIKIRLTKKQLHDLLSKVNVHDLTFHQQAA----FSCPSLNNRGYEEANHQRLWRPV 108

Query: 116 LQSIPEVN 123
           LQSIPEVN
Sbjct: 109 LQSIPEVN 116

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567348|ref|XP_003551883.1| PREDICTED: uncharacterized protein LOC100791945 [Glycine max]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 70/128 (54%), Gaps = 32/128 (25%)

Query: 1   MGNCIRHQHQPSMQWAG-----DDWGAVVESASNHRTEEAKQEGLLLGGDKVGFITSPTS 55
           MGNC++HQ   + ++ G     DDW                     L G++  F  + T 
Sbjct: 1   MGNCLKHQSSTN-KYDGSDHDSDDWD-------------------FLAGEEGSF--AATK 38

Query: 56  AASSTEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNVSSSNDRYHETNQRSWRPA 115
           A + TE+KIKITKKQLEELL K DV+ L V+QVL+ L+N +         ++ QR WRPA
Sbjct: 39  AKTVTEVKIKITKKQLEELLSKVDVRELRVEQVLSQLMNHSSGG-----FQSLQRPWRPA 93

Query: 116 LQSIPEVN 123
           LQSIPE N
Sbjct: 94  LQSIPEAN 101

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224076238|ref|XP_002304911.1| predicted protein [Populus trichocarpa] gi|222847875|gb|EEE85422.1| predicted protein [Populus trichocarpa]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 75/134 (55%), Gaps = 22/134 (16%)

Query: 1   MGNCIRHQHQPSMQWAGDDWGAV----------VESASNHRTEEAKQEGLLLGGDKVGFI 50
           MGNC +     S+ WA DDW +V           + A +H       E   L G      
Sbjct: 1   MGNCCKSA-SSSVVWADDDWASVAHHKHHHAAMFDGADDHEEHGTNMERQRLLG------ 53

Query: 51  TSPTSAASSTEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNVSSSNDRYH-ETNQ 109
           T   S+ S+ E+KI+ITK++LEE++ +  ++GLS++QVL  L+N    S++ ++  + N 
Sbjct: 54  TGSLSSGSTREVKIRITKRELEEIMARVSIQGLSMEQVLGMLVN----STDLKFEMDLNH 109

Query: 110 RSWRPALQSIPEVN 123
           + W+PALQSIPEVN
Sbjct: 110 KHWKPALQSIPEVN 123

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
TAIR|locus:2092384	115	AT3G20340 "AT3G20340" [Arabido	0.902	0.965	0.322	1.4e-09
TAIR|locus:2141682	129	AT4G21920 "AT4G21920" [Arabido	0.991	0.945	0.261	3e-05
TAIR|locus:2089945	119	AT3G21680 "AT3G21680" [Arabido	0.300	0.310	0.372	0.00042

TAIR|locus:2092384 AT3G20340 "AT3G20340" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 41/127 (32%), Positives = 58/127 (45%)

Query:     1 MGNCIRHQHQPSMQWAGDDWGAVV--ESASNHRTEEAKQEGLLLGGDKVGFITSPT-SAA 57
             MGNC+RH+ +  M WAG+DW   +  +   +H + +  ++G      K   +T  + S+ 
Sbjct:     1 MGNCLRHESE--MHWAGEDWDEFITEDEEDHHYSSKTTRDG------KPVIVTRDSKSSV 52

Query:    58 SSXXXXXXXXXXXXXXXXGKADVKGLSVQQVLAHLINVNVSSSNDRYHETNQ-RSWRPAL 116
              S                 K +V  L+ QQ       +N    N  Y E NQ R WRP L
Sbjct:    53 PSHEIKIRLTKKQLHDLLSKVNVHDLTFQQQTFSCPILN----NRGYEEANQQRLWRPVL 108

Query:   117 QSIPEVN 123
             QSIPEVN
Sbjct:   109 QSIPEVN 115

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2141682 AT4G21920 "AT4G21920" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 34/130 (26%), Positives = 57/130 (43%)

Query:     1 MGNCIRHQHQPSMQWAGDDWGAVVESASNHRT---EEAKQEGLLLGGDKVGFITSPTSAA 57
             MGNCI    + +  W+GDD G+  +     R+    +   +G  L G+    +TS +S++
Sbjct:     1 MGNCICVTEKTTTSWSGDDNGSYNKRRRRRRSTVVHDDNDDGEKLLGETSN-VTSTSSSS 59

Query:    58 SSXXXXXXXXXXXXXXXXGKADV--KGLSVQQVLAHLINVNVSSSN-DRYHETNQRS-WR 113
             SS                   ++  K L+ +++L+ LI              TN    W+
Sbjct:    60 SSERREIKIRITKKELEDLMRNIGLKSLTAEEILSKLIFEGGDQIGFSAVDVTNHHQPWK 119

Query:   114 PALQSIPEVN 123
             P LQSIPE++
Sbjct:   120 PVLQSIPEMD 129

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2089945 AT3G21680 "AT3G21680" [Arabidopsis thaliana (taxid:3702)]

 Score = 71 (30.1 bits), Expect = 0.00042, Sum P(2) = 0.00042
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query:    84 SVQQVLAHLI-----NVNVSSSNDRYHETNQRSWRPALQSIPE 121
             S+QQ L H++     N++++S  +   E    +WRP L+SIPE
Sbjct:    75 SIQQ-LVHVLKDSGRNISMASYEEDEKEEGDENWRPTLESIPE 116

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00027329001 SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (77 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	123
pfam14009	181	pfam14009, DUF4228, Domain of unknown function (DU	5e-04

>gnl|CDD|222492 pfam14009, DUF4228, Domain of unknown function (DUF4228)

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 9/62 (14%)

Query: 61  EIKIKITKKQLEELL-GKADVKGLSVQQVLAHLINVNVSSSNDRYHETNQRSWRPALQSI 119
            +K+ ++K++LEELL   +    LS       L          R   +  RSWRP L++I
Sbjct: 128 RVKVVVSKEELEELLEEGSVSASLSELCETPEL--------RKRSRGSRSRSWRPKLETI 179

Query: 120 PE 121
            E
Sbjct: 180 SE 181

This domain is found in plants. The function is not known. Length = 181

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	123
PF14009	181	DUF4228: Domain of unknown function (DUF4228)	99.07

>PF14009 DUF4228: Domain of unknown function (DUF4228)

Probab=99.07  E-value=1.2e-10  Score=85.26  Aligned_cols=60  Identities=38%  Similarity=0.581  Sum_probs=41.8

Q ss_pred             CCCCceEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHHhcccCCCCCccCCCCCCCCCCCCCCCCC
Q 033262           55 SAASSTEIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNVSSSNDRYHETNQRSWRPALQSIPE  121 (123)
Q Consensus        55 ~~~~~vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~~~~~~~~~~~~~~~~~~~WrPaLeSIPE  121 (123)
                      ..+++++|||+|+|+||+++|...     +.++++.++.......  ..+...+.++|||+||||||
T Consensus       122 ~~~g~~rvki~isk~el~~~l~~~-----s~~~~~~~~~~~~~~~--~~~~~~~~~~WrP~LesI~E  181 (181)
T PF14009_consen  122 SNGGVVRVKIVISKEELEELLSEG-----SDEEMLSESCRRPRRR--SSRRGSRSRSWRPALESIPE  181 (181)
T ss_pred             ccCcccccccccCHHHHHHHHhcc-----ccchhhhhhhcccccc--ccccCCCCCCccCCCCCcCc
Confidence            356788999999999999999754     4455555544332110  11234567899999999998

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	123
2ba3_A	51	NIKA; dimer, bacterial conjugation, relaxase, DNA	86.18

>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}

Probab=86.18  E-value=1.5  Score=25.78  Aligned_cols=37  Identities=16%  Similarity=0.226  Sum_probs=31.1

Q ss_pred             CCceEEEEEEeHHHHHHHHhccCCCCCcHHHHHHHHH
Q 033262           57 ASSTEIKIKITKKQLEELLGKADVKGLSVQQVLAHLI   93 (123)
Q Consensus        57 ~~~vrVKIvITKqEL~~LL~k~~~~g~slEqvL~~L~   93 (123)
                      .....|.|+||-+|.+.|-.+....|+++.+.+..+.
T Consensus        13 ~r~~~i~vRlt~eE~~~l~~~A~~~g~s~SeyiR~~~   49 (51)
T 2ba3_A           13 QKTVVRTLRFSPVEDETIRKKAEDSGLTVSAYIRNAA   49 (51)
T ss_dssp             CCSEEEEEEECHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             cCceeEEEEECHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            4577899999999999999988777889988877653

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00