Citrus Sinensis ID: 033290

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
MGACFVFVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR
Secondary Structure (PSIPRED)
cccEEEEEEEEEEEEEEccccccccccEEEEEEcccccccEEEEEEEEcccccEEEEEEccccccccEEEEEEEEEEEEcccccccccEEEEEEEEccccccccccccccccHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEcEEEEEEEHHHHHHHcEEEEEEEEEccccccEEEEEEEccccEEEEEEEcEcccccEEcEEEEEEEEEEEEEHHHccccEEcEEEEEEEccccccccccccccHHHHHHHccc
Coil and Loop (DISEMBL)
MGACFVFVLKLVVLYVDFkldesytpskisvragdgfhnlkeiktvelvkPTGWVYIslsgndprdtfVNTFMLQIVVLSNhlngrdthVRQIkiygprpnpiphqqfqftssefitystvr
Flexible Loop (DISEMBL)
MGACFVFVLKLVVLYVDFKLdesytpskisvragdgfhnlkeiktvelvkpTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGPrpnpiphqqfqftssefitystvr
Low Complexity Region (SEG)
MGACfvfvlklvvlyvdfkldESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR
Disordered region (IsUnstruct)
**ACFVFVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGPR********FQFT***FI******
Disordered Region (DISOPRED)
***CFVFVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR
Disordered Region (DISEMBL)
MGACFVFVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR
Disordered Region (DISPRO)
MGACFVFVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGACFVFVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	122	2.2.26 [Sep-21-2011]
Q9ZPW2	192	Anaphase-promoting comple	yes	no	0.934	0.593	0.868	5e-56
Q8K2H6	185	Anaphase-promoting comple	yes	no	0.926	0.610	0.504	7e-28
Q9UM13	185	Anaphase-promoting comple	yes	no	0.926	0.610	0.504	8e-28
Q2YDH1	185	Anaphase-promoting comple	yes	no	0.926	0.610	0.504	8e-28
Q9V831	195	Anaphase-promoting comple	yes	no	0.893	0.558	0.460	1e-23
Q55ER5	188	Anaphase-promoting comple	yes	no	0.926	0.601	0.433	6e-21
O42971	189	Anaphase-promoting comple	yes	no	0.926	0.597	0.396	1e-19
P53068	250	Anaphase-promoting comple	yes	no	0.770	0.376	0.312	3e-08

>sp|Q9ZPW2|APC10_ARATH Anaphase-promoting complex subunit 10 OS=Arabidopsis thaliana GN=At2g18290 PE=1 SV=2

 Score =  216 bits (549), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 99/114 (86%), Positives = 109/114 (95%)

Query: 9   LKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTF 68
           L+LVVLYVDFKLDESYTPSKIS+RAGDGFHNLKEIK+VELVKPTGWV +SLSG DPR+TF
Sbjct: 79  LQLVVLYVDFKLDESYTPSKISIRAGDGFHNLKEIKSVELVKPTGWVCLSLSGTDPRETF 138

Query: 69  VNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 122
           VNTFMLQI +LSNHLNGRDTH+RQIK+YGPRPNPIPHQ FQFTS EF+TYST+R
Sbjct: 139 VNTFMLQIAILSNHLNGRDTHIRQIKVYGPRPNPIPHQPFQFTSMEFLTYSTLR 192

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating the ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several other aspects of development. Involved in the control of endoreduplication.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8K2H6|APC10_MOUSE Anaphase-promoting complex subunit 10 OS=Mus musculus GN=Anapc10 PE=2 SV=1

 Score =  122 bits (306), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 58/115 (50%), Positives = 83/115 (72%), Gaps = 2/115 (1%)

Query: 8   VLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDT 67
            +K + +Y D+K DESYTPSKISVR G+ FHNL+EI+ +ELV+P+GW+++ L+ N  + T
Sbjct: 73  TVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT 132

Query: 68  FVNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 122
              TFM+QI VL+NH NGRDTH+RQIKIY P       +  + T+ +F+ Y ++R
Sbjct: 133 --RTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMMYRSIR 185

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Mus musculus (taxid: 10090)

>sp|Q9UM13|APC10_HUMAN Anaphase-promoting complex subunit 10 OS=Homo sapiens GN=ANAPC10 PE=1 SV=1

 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 58/115 (50%), Positives = 83/115 (72%), Gaps = 2/115 (1%)

Query: 8   VLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDT 67
            +K + +Y D+K DESYTPSKISVR G+ FHNL+EI+ +ELV+P+GW+++ L+ N  + T
Sbjct: 73  TVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT 132

Query: 68  FVNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 122
              TFM+QI VL+NH NGRDTH+RQIKIY P       +  + T+ +F+ Y ++R
Sbjct: 133 --RTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMMYRSIR 185

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Homo sapiens (taxid: 9606)

>sp|Q2YDH1|APC10_BOVIN Anaphase-promoting complex subunit 10 OS=Bos taurus GN=ANAPC10 PE=2 SV=1

 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 58/115 (50%), Positives = 83/115 (72%), Gaps = 2/115 (1%)

Query: 8   VLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDT 67
            +K + +Y D+K DESYTPSKISVR G+ FHNL+EI+ +ELV+P+GW+++ L+ N  + T
Sbjct: 73  TVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT 132

Query: 68  FVNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 122
              TFM+QI VL+NH NGRDTH+RQIKIY P       +  + T+ +F+ Y ++R
Sbjct: 133 --RTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMMYRSIR 185

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Bos taurus (taxid: 9913)

>sp|Q9V831|APC10_DROME Anaphase-promoting complex subunit 10 OS=Drosophila melanogaster GN=Apc10 PE=2 SV=2

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 81/113 (71%), Gaps = 4/113 (3%)

Query: 12  VVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNT 71
           + +Y D+KLDESYTPS+IS+R+G  F++L+E++ ++L +PTGWV I +   + +   + T
Sbjct: 85  IYIYTDYKLDESYTPSRISIRSGTNFNDLQELQVMDLTEPTGWVQIPIKDGNVKS--IRT 142

Query: 72  FMLQIVVLSNHLNGRDTHVRQIKIYGP-RPNPIPHQQF-QFTSSEFITYSTVR 122
           FMLQI V+SNH NGRDTH+RQI+I+ P      P + F +F + +F  ++T+R
Sbjct: 143 FMLQIAVISNHQNGRDTHMRQIRIHAPVEGKHYPLELFGKFGTVDFQKFATIR 195

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle.

Drosophila melanogaster (taxid: 7227)

>sp|Q55ER5|APC10_DICDI Anaphase-promoting complex subunit 10 OS=Dictyostelium discoideum GN=anapc10 PE=3 SV=1

 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 79/120 (65%), Gaps = 7/120 (5%)

Query: 4   CFVFVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGND 63
           C++  L   +++ D+KLDESYTP KIS++AG   H+L+EI   EL +P+GW+ I LS N 
Sbjct: 75  CYIENL---LIHCDYKLDESYTPCKISIKAGTILHDLQEIILTELEEPSGWINIPLSFN- 130

Query: 64  PRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQF-QFTSSEFITYSTVR 122
             +  +   +LQI +LSN  NGRD+H+RQIK+YG + +   + Q+ +F S E   + T+R
Sbjct: 131 --NNSLKANLLQISILSNLKNGRDSHIRQIKVYGKKISIENYTQYPKFNSPEVSMFQTLR 188

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.

Dictyostelium discoideum (taxid: 44689)

>sp|O42971|APC10_SCHPO Anaphase-promoting complex subunit 10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=apc10 PE=1 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 78/116 (67%), Gaps = 3/116 (2%)

Query: 9   LKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTF 68
           +K V +Y+ + LDESYTPS + + AG GF +L+ + TV++ +PTGWV++ + G+  R+  
Sbjct: 75  IKYVSMYLQYTLDESYTPSTLRISAGTGFQDLEIVTTVQVEEPTGWVHVPV-GDFGRNGL 133

Query: 69  VNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPN--PIPHQQFQFTSSEFITYSTVR 122
           ++  ++QI +L+NH +G+D+HVR IKIY P      I   +  +TS +FI+ + +R
Sbjct: 134 LDVHLIQIKILANHQSGKDSHVRLIKIYAPEIEQPAIAVDEIPYTSLQFISRNQLR 189

Component of the anaphase-promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C is thought to confer substrate specificity and, in the presence of ubiquitin-conjugating E2 enzymes, it catalyzes the formation of protein-ubiquitin conjugates that are subsequently degraded by the 26S proteasome. Acts as a positive regulator of the anaphase promoting complex (APC)-cyclosome. Involved in G1 cell cycle arrest in response to nitrogen starvation. Required for ubiquitination and degradation of the mitotic B-type cyclin, cdc13.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P53068|APC10_YEAST Anaphase-promoting complex subunit DOC1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DOC1 PE=1 SV=2

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)

Query: 9   LKLVVLYVDFKL--DESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRD 66
           + + V+ + F +  DESY PS + V AG    + +  K +E+    GWV +    N   D
Sbjct: 131 MDICVMAIFFSMIADESYAPSLVKVYAGHSPSDARFYKMLEVRNVNGWVALRFLDNREDD 190

Query: 67  TFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNP 102
             +    ++++   NH NG+DTH+R I++Y P   P
Sbjct: 191 QLLKCQFIRLLFPVNHENGKDTHLRGIRLYVPSNEP 226

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C is thought to confer substrate specificity and, in the presence of ubiquitin-conjugating E2 enzymes, it catalyzes the formation of protein-ubiquitin conjugates that are subsequently degraded by the 26S proteasome. In early mitosis, the APC/C is activated by CDC20 and targets securin PDS1, the B-type cyclin CLB5, and other anaphase inhibitory proteins for proteolysis, thereby triggering the separation of sister chromatids at the metaphase-to-anaphase transition. In late mitosis and in G1, degradation of CLB5 allows activation of the APC/C by CDH1, which is needed to destroy CDC20 and the B-type cyclin CLB2 to allow exit from mitosis and creating the low CDK state necessary for cytokinesis and for reforming prereplicative complexes in G1 prior to another round of replication. DOC1 is required, together with the coactivators CDH1 and CDC20, for recognition and binding of the substrates.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
449446698	192	PREDICTED: anaphase-promoting complex su	0.934	0.593	0.912	3e-56
351725793	192	uncharacterized protein LOC100526925 [Gl	0.934	0.593	0.894	4e-56
358249186	192	uncharacterized protein LOC100806981 [Gl	0.934	0.593	0.894	5e-56
224134260	192	predicted protein [Populus trichocarpa]	0.934	0.593	0.894	1e-55
255561114	192	anaphase-promoting complex, putative [Ri	0.934	0.593	0.903	1e-55
388499086	197	unknown [Lotus japonicus]	0.934	0.578	0.877	3e-55
388512629	196	unknown [Medicago truncatula]	0.934	0.581	0.885	4e-55
224094807	192	predicted protein [Populus trichocarpa]	0.934	0.593	0.885	1e-54
18398701	192	anaphase-promoting complex subunit 10 [A	0.934	0.593	0.868	2e-54
297836562	192	anaphase-promoting complex, subunit 10 f	0.934	0.593	0.868	2e-54

>gi|449446698|ref|XP_004141108.1| PREDICTED: anaphase-promoting complex subunit 10-like [Cucumis sativus] gi|449489479|ref|XP_004158324.1| PREDICTED: anaphase-promoting complex subunit 10-like [Cucumis sativus]

 Score =  222 bits (565), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 104/114 (91%), Positives = 109/114 (95%)

Query: 9   LKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTF 68
           L+LVVLYVDFKLDESYTPSKIS+RAGDGFHNLKEIKTVELVKPTGWVY+ LSGNDP+DTF
Sbjct: 79  LQLVVLYVDFKLDESYTPSKISIRAGDGFHNLKEIKTVELVKPTGWVYLLLSGNDPKDTF 138

Query: 69  VNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 122
           VNTFMLQI VLSNHLNGRDTHVRQIKIYGPRPNPIPHQ FQFTS EFITYS +R
Sbjct: 139 VNTFMLQIAVLSNHLNGRDTHVRQIKIYGPRPNPIPHQPFQFTSREFITYSIIR 192

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725793|ref|NP_001236081.1| uncharacterized protein LOC100526925 [Glycine max] gi|255631165|gb|ACU15948.1| unknown [Glycine max]

 Score =  221 bits (563), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 102/114 (89%), Positives = 110/114 (96%)

Query: 9   LKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTF 68
           L+L+VLYVDFKLDESYTPSK+S+RAGDGFHNLKEIKTVELVKPTGWVY+SLSG DPRDTF
Sbjct: 79  LQLIVLYVDFKLDESYTPSKVSIRAGDGFHNLKEIKTVELVKPTGWVYLSLSGVDPRDTF 138

Query: 69  VNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 122
           VNTFMLQI VLSNHLNGRDTHVRQIK+YGPRPNPIPHQ FQFTS EFITYS++R
Sbjct: 139 VNTFMLQIAVLSNHLNGRDTHVRQIKVYGPRPNPIPHQPFQFTSREFITYSSIR 192

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249186|ref|NP_001240007.1| uncharacterized protein LOC100806981 [Glycine max] gi|255633646|gb|ACU17182.1| unknown [Glycine max]

 Score =  221 bits (562), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 102/114 (89%), Positives = 110/114 (96%)

Query: 9   LKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTF 68
           L+L+VLYVDFKLDESYTPSK+S+RAGDGFHNLKEIKTVELVKPTGWVY+SLSG DPRDTF
Sbjct: 79  LQLIVLYVDFKLDESYTPSKVSIRAGDGFHNLKEIKTVELVKPTGWVYLSLSGVDPRDTF 138

Query: 69  VNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 122
           VNTFMLQI VLSNHLNGRDTHVRQIK+YGPRPNPIPHQ FQFTS EFITYS++R
Sbjct: 139 VNTFMLQIAVLSNHLNGRDTHVRQIKVYGPRPNPIPHQPFQFTSREFITYSSIR 192

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134260|ref|XP_002327795.1| predicted protein [Populus trichocarpa] gi|222836880|gb|EEE75273.1| predicted protein [Populus trichocarpa]

 Score =  219 bits (559), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 102/114 (89%), Positives = 109/114 (95%)

Query: 9   LKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTF 68
           L+LVVLYVDFKLDESYTPSKIS+RAGDGFHNLKEIKT+ELVKPTGWVY+SLSGNDPR+TF
Sbjct: 79  LQLVVLYVDFKLDESYTPSKISIRAGDGFHNLKEIKTMELVKPTGWVYLSLSGNDPRETF 138

Query: 69  VNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 122
           VNTFMLQI VLSNHLNGRDTHVRQIK+YGPRPNP PHQ FQFTS EFI YS+VR
Sbjct: 139 VNTFMLQIAVLSNHLNGRDTHVRQIKVYGPRPNPFPHQPFQFTSREFIMYSSVR 192

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561114|ref|XP_002521569.1| anaphase-promoting complex, putative [Ricinus communis] gi|223539247|gb|EEF40840.1| anaphase-promoting complex, putative [Ricinus communis]

 Score =  219 bits (559), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 103/114 (90%), Positives = 110/114 (96%)

Query: 9   LKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTF 68
           L+LV+LYVDFKLDESYTPSKIS+RAGDGFHNLKEIKTVELVKPTGWVY+SLSGNDPR+TF
Sbjct: 79  LQLVLLYVDFKLDESYTPSKISIRAGDGFHNLKEIKTVELVKPTGWVYLSLSGNDPRETF 138

Query: 69  VNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 122
           VNTFMLQI VLSNHLNGRDTHVRQIK+YGPR NPIPHQ FQFTS EFITYS+VR
Sbjct: 139 VNTFMLQIAVLSNHLNGRDTHVRQIKVYGPRLNPIPHQPFQFTSREFITYSSVR 192

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499086|gb|AFK37609.1| unknown [Lotus japonicus]

 Score =  218 bits (555), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 100/114 (87%), Positives = 110/114 (96%)

Query: 9   LKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTF 68
           L+LVVLYVDFKLDESYTPSKIS+RAGDGFHNLKEIK+VELVKP+GW+Y+SLSG DPR+TF
Sbjct: 84  LQLVVLYVDFKLDESYTPSKISIRAGDGFHNLKEIKSVELVKPSGWIYLSLSGVDPRETF 143

Query: 69  VNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 122
           VNTFMLQI VLSNHLNGRDTHVRQIK+YGPRPNPIPHQ +QFTS EFITYST+R
Sbjct: 144 VNTFMLQIAVLSNHLNGRDTHVRQIKVYGPRPNPIPHQPYQFTSREFITYSTIR 197

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512629|gb|AFK44376.1| unknown [Medicago truncatula]

 Score =  218 bits (554), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 101/114 (88%), Positives = 109/114 (95%)

Query: 9   LKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTF 68
           L+LVVLYVDFKLDESYTPSKIS+RAGDGFHNLKEIK VELVKPTGW+Y+SLSG DPR+TF
Sbjct: 83  LQLVVLYVDFKLDESYTPSKISIRAGDGFHNLKEIKAVELVKPTGWLYLSLSGLDPRETF 142

Query: 69  VNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 122
           VNTFMLQI VLSNHLNGRDTHVRQIK+YGPRPNPIP Q FQFTS+EFITYST+R
Sbjct: 143 VNTFMLQIAVLSNHLNGRDTHVRQIKVYGPRPNPIPQQPFQFTSTEFITYSTIR 196

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094807|ref|XP_002310244.1| predicted protein [Populus trichocarpa] gi|222853147|gb|EEE90694.1| predicted protein [Populus trichocarpa]

 Score =  216 bits (550), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 101/114 (88%), Positives = 109/114 (95%)

Query: 9   LKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTF 68
           L+LVVLYVDFKLDESYTPSKIS+RAGDGFHNLKEIKT+ELVKPTGWVY+SLSGNDPR+TF
Sbjct: 79  LQLVVLYVDFKLDESYTPSKISIRAGDGFHNLKEIKTMELVKPTGWVYLSLSGNDPRETF 138

Query: 69  VNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 122
           VNTFMLQI VLSNHLNGRDTHVRQIK+YGP+ NP PHQ FQFTS EFITYS+VR
Sbjct: 139 VNTFMLQIAVLSNHLNGRDTHVRQIKVYGPQLNPFPHQPFQFTSREFITYSSVR 192

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398701|ref|NP_565433.1| anaphase-promoting complex subunit 10 [Arabidopsis thaliana] gi|34395513|sp|Q9ZPW2.2|APC10_ARATH RecName: Full=Anaphase-promoting complex subunit 10; Short=APC10; AltName: Full=Cyclosome subunit 10 gi|20197809|gb|AAD15507.2| expressed protein [Arabidopsis thaliana] gi|90567996|gb|ABD94068.1| At2g18290 [Arabidopsis thaliana] gi|110738941|dbj|BAF01391.1| hypothetical protein [Arabidopsis thaliana] gi|330251657|gb|AEC06751.1| anaphase-promoting complex subunit 10 [Arabidopsis thaliana]

 Score =  216 bits (549), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 99/114 (86%), Positives = 109/114 (95%)

Query: 9   LKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTF 68
           L+LVVLYVDFKLDESYTPSKIS+RAGDGFHNLKEIK+VELVKPTGWV +SLSG DPR+TF
Sbjct: 79  LQLVVLYVDFKLDESYTPSKISIRAGDGFHNLKEIKSVELVKPTGWVCLSLSGTDPRETF 138

Query: 69  VNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 122
           VNTFMLQI +LSNHLNGRDTH+RQIK+YGPRPNPIPHQ FQFTS EF+TYST+R
Sbjct: 139 VNTFMLQIAILSNHLNGRDTHIRQIKVYGPRPNPIPHQPFQFTSMEFLTYSTLR 192

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836562|ref|XP_002886163.1| anaphase-promoting complex, subunit 10 family [Arabidopsis lyrata subsp. lyrata] gi|297332003|gb|EFH62422.1| anaphase-promoting complex, subunit 10 family [Arabidopsis lyrata subsp. lyrata]

 Score =  216 bits (549), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 99/114 (86%), Positives = 109/114 (95%)

Query: 9   LKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTF 68
           L+LVVLYVDFKLDESYTPSKIS+RAGDGFHNLKEIK+VELVKPTGWV +SLSG DPR+TF
Sbjct: 79  LQLVVLYVDFKLDESYTPSKISIRAGDGFHNLKEIKSVELVKPTGWVCLSLSGTDPRETF 138

Query: 69  VNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 122
           VNTFMLQI +LSNHLNGRDTH+RQIK+YGPRPNPIPHQ FQFTS EF+TYST+R
Sbjct: 139 VNTFMLQIAILSNHLNGRDTHIRQIKVYGPRPNPIPHQPFQFTSMEFLTYSTLR 192

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
TAIR|locus:2062106	192	APC10 "anaphase promoting comp	0.827	0.526	0.861	3e-46
UNIPROTKB|F2Z4G9	185	ANAPC10 "Anaphase-promoting co	0.811	0.535	0.524	6.8e-24
UNIPROTKB|Q2YDH1	185	ANAPC10 "Anaphase-promoting co	0.811	0.535	0.524	6.8e-24
UNIPROTKB|E2R745	185	ANAPC10 "Uncharacterized prote	0.811	0.535	0.524	6.8e-24
UNIPROTKB|Q9UM13	185	ANAPC10 "Anaphase-promoting co	0.811	0.535	0.524	6.8e-24
UNIPROTKB|F1RS48	185	ANAPC10 "Uncharacterized prote	0.811	0.535	0.524	6.8e-24
MGI|MGI:1916249	185	Anapc10 "anaphase promoting co	0.811	0.535	0.524	6.8e-24
RGD|1308936	185	Anapc10 "anaphase promoting co	0.811	0.535	0.524	6.8e-24
UNIPROTKB|Q5ZL04	185	ANAPC10 "Uncharacterized prote	0.811	0.535	0.495	6.1e-23
ZFIN|ZDB-GENE-060224-2	185	anapc10 "anaphase promoting co	0.795	0.524	0.504	7.8e-23

TAIR|locus:2062106 APC10 "anaphase promoting complex 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 87/101 (86%), Positives = 96/101 (95%)

Query:    22 ESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSN 81
             ESYTPSKIS+RAGDGFHNLKEIK+VELVKPTGWV +SLSG DPR+TFVNTFMLQI +LSN
Sbjct:    92 ESYTPSKISIRAGDGFHNLKEIKSVELVKPTGWVCLSLSGTDPRETFVNTFMLQIAILSN 151

Query:    82 HLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 122
             HLNGRDTH+RQIK+YGPRPNPIPHQ FQFTS EF+TYST+R
Sbjct:   152 HLNGRDTHIRQIKVYGPRPNPIPHQPFQFTSMEFLTYSTLR 192

GO:0005634 "nucleus" evidence=ISM

GO:0005680 "anaphase-promoting complex" evidence=IEA

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IEA

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0032875 "regulation of DNA endoreduplication" evidence=RCA;IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0016604 "nuclear body" evidence=IDA

GO:0032876 "negative regulation of DNA endoreduplication" evidence=IMP

GO:0007276 "gamete generation" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051302 "regulation of cell division" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

UNIPROTKB|F2Z4G9 ANAPC10 "Anaphase-promoting complex subunit 10" [Bos taurus (taxid:9913)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 53/101 (52%), Positives = 74/101 (73%)

Query:    22 ESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSN 81
             ESYTPSKISVR G+ FHNL+EI+ +ELV+P+GW+++ L+ N  + T   TFM+QI VL+N
Sbjct:    87 ESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT--RTFMIQIAVLAN 144

Query:    82 HLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 122
             H NGRDTH+RQIKIY P       +  + T+ +F+ Y ++R
Sbjct:   145 HQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMMYRSIR 185

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

UNIPROTKB|Q2YDH1 ANAPC10 "Anaphase-promoting complex subunit 10" [Bos taurus (taxid:9913)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 53/101 (52%), Positives = 74/101 (73%)

Query:    22 ESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSN 81
             ESYTPSKISVR G+ FHNL+EI+ +ELV+P+GW+++ L+ N  + T   TFM+QI VL+N
Sbjct:    87 ESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT--RTFMIQIAVLAN 144

Query:    82 HLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 122
             H NGRDTH+RQIKIY P       +  + T+ +F+ Y ++R
Sbjct:   145 HQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMMYRSIR 185

GO:0070979 "protein K11-linked ubiquitination" evidence=ISS

GO:0005680 "anaphase-promoting complex" evidence=ISS

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IEA

UNIPROTKB|E2R745 ANAPC10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 53/101 (52%), Positives = 74/101 (73%)

Query:    22 ESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSN 81
             ESYTPSKISVR G+ FHNL+EI+ +ELV+P+GW+++ L+ N  + T   TFM+QI VL+N
Sbjct:    87 ESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT--RTFMIQIAVLAN 144

Query:    82 HLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 122
             H NGRDTH+RQIKIY P       +  + T+ +F+ Y ++R
Sbjct:   145 HQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMMYRSIR 185

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

UNIPROTKB|Q9UM13 ANAPC10 "Anaphase-promoting complex subunit 10" [Homo sapiens (taxid:9606)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 53/101 (52%), Positives = 74/101 (73%)

Query:    22 ESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSN 81
             ESYTPSKISVR G+ FHNL+EI+ +ELV+P+GW+++ L+ N  + T   TFM+QI VL+N
Sbjct:    87 ESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT--RTFMIQIAVLAN 144

Query:    82 HLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 122
             H NGRDTH+RQIKIY P       +  + T+ +F+ Y ++R
Sbjct:   145 HQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMMYRSIR 185

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=NAS

GO:0070979 "protein K11-linked ubiquitination" evidence=IDA

GO:0005680 "anaphase-promoting complex" evidence=NAS;IDA

GO:0000090 "mitotic anaphase" evidence=TAS

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0004842 "ubiquitin-protein ligase activity" evidence=TAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007094 "mitotic spindle assembly checkpoint" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

UNIPROTKB|F1RS48 ANAPC10 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 53/101 (52%), Positives = 74/101 (73%)

Query:    22 ESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSN 81
             ESYTPSKISVR G+ FHNL+EI+ +ELV+P+GW+++ L+ N  + T   TFM+QI VL+N
Sbjct:    87 ESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT--RTFMIQIAVLAN 144

Query:    82 HLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 122
             H NGRDTH+RQIKIY P       +  + T+ +F+ Y ++R
Sbjct:   145 HQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMMYRSIR 185

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

MGI|MGI:1916249 Anapc10 "anaphase promoting complex subunit 10" [Mus musculus (taxid:10090)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 53/101 (52%), Positives = 74/101 (73%)

Query:    22 ESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSN 81
             ESYTPSKISVR G+ FHNL+EI+ +ELV+P+GW+++ L+ N  + T   TFM+QI VL+N
Sbjct:    87 ESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT--RTFMIQIAVLAN 144

Query:    82 HLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 122
             H NGRDTH+RQIKIY P       +  + T+ +F+ Y ++R
Sbjct:   145 HQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMMYRSIR 185

GO:0003674 "molecular_function" evidence=ND

GO:0005680 "anaphase-promoting complex" evidence=ISO

GO:0005737 "cytoplasm" evidence=IDA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IEA

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=ISO

RGD|1308936 Anapc10 "anaphase promoting complex subunit 10" [Rattus norvegicus (taxid:10116)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 53/101 (52%), Positives = 74/101 (73%)

Query:    22 ESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSN 81
             ESYTPSKISVR G+ FHNL+EI+ +ELV+P+GW+++ L+ N  + T   TFM+QI VL+N
Sbjct:    87 ESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT--RTFMIQIAVLAN 144

Query:    82 HLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 122
             H NGRDTH+RQIKIY P       +  + T+ +F+ Y ++R
Sbjct:   145 HQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMMYRSIR 185

GO:0005680 "anaphase-promoting complex" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IEA

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA;ISO

UNIPROTKB|Q5ZL04 ANAPC10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 50/101 (49%), Positives = 73/101 (72%)

Query:    22 ESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSN 81
             ESYTPSKISVR G+ FHNL+E++ +ELV+P+GW+++ L+  D     + TFM+QI VL+N
Sbjct:    87 ESYTPSKISVRVGNNFHNLQEVRQLELVEPSGWIHVPLT--DTHKKPIRTFMIQIAVLAN 144

Query:    82 HLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 122
             H NGRDTH+RQIK+Y P       +  + T+ +F+ Y ++R
Sbjct:   145 HQNGRDTHMRQIKVYTPVEESSIGKFPRCTTIDFMMYRSIR 185

GO:0005680 "anaphase-promoting complex" evidence=IEA

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IEA

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

ZFIN|ZDB-GENE-060224-2 anapc10 "anaphase promoting complex subunit 10" [Danio rerio (taxid:7955)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 52/103 (50%), Positives = 74/103 (71%)

Query:    22 ESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSG--NDPRDTFVNTFMLQIVVL 79
             ESYTPS+ISVR G+ FHNL+EI+ +E+V+P+GW++I L    N+P    + TFM+QI VL
Sbjct:    87 ESYTPSRISVRVGNNFHNLQEIRQLEMVEPSGWIHIPLLDLVNNP----IRTFMIQIAVL 142

Query:    80 SNHLNGRDTHVRQIKIYGPRPNPIPHQQFQFTSSEFITYSTVR 122
             +NH NGRDTH+RQIK+Y P       +  + T+ +F+ Y T+R
Sbjct:   143 ANHQNGRDTHMRQIKVYTPVEESSIGKYPRCTTVDFMMYRTIR 185

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UM13	APC10_HUMAN	No assigned EC number	0.5043	0.9262	0.6108	yes	no
Q8K2H6	APC10_MOUSE	No assigned EC number	0.5043	0.9262	0.6108	yes	no
Q9ZPW2	APC10_ARATH	No assigned EC number	0.8684	0.9344	0.5937	yes	no
Q2YDH1	APC10_BOVIN	No assigned EC number	0.5043	0.9262	0.6108	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_scaffold_57000164	hypothetical protein (192 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_LG_XII0260	hypothetical protein (576 aa)					•	•	•		0.633
	eugene3.01820024	hypothetical protein (542 aa)					•	•	•		0.558
	estExt_fgenesh4_pm.C_LG_XVIII0257	hypothetical protein (761 aa)					•	•	•		0.485
	gw1.211.19.1	annotation not avaliable (709 aa)					•	•	•		0.477
	estExt_fgenesh4_pm.C_LG_VIII0355	hypothetical protein (870 aa)					•	•	•		0.462

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	122
pfam03256	175	pfam03256, APC10, Anaphase-promoting complex, subu	3e-46
cd08366	139	cd08366, APC10, APC10 subunit of the anaphase-prom	8e-46
COG5156	189	COG5156, DOC1, Anaphase-promoting complex (APC), s	3e-29
cd08159	129	cd08159, APC10-like, APC10-like DOC1 domains in E3	5e-09
cd08664	152	cd08664, APC10-HERC2, APC10-like DOC1 domain prese	3e-04

>gnl|CDD|217458 pfam03256, APC10, Anaphase-promoting complex, subunit 10 (APC10)

 Score =  147 bits (372), Expect = 3e-46
 Identities = 62/102 (60%), Positives = 79/102 (77%), Gaps = 4/102 (3%)

Query: 9   LKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTF 68
           +  V +Y+D+KLDESYTPSKI VRAG GF++L+E+KT+E+ +PTGWV+I L   D R+  
Sbjct: 74  ISYVAIYLDYKLDESYTPSKIRVRAGTGFNDLQEVKTLEVGEPTGWVHIPLR--DGREKP 131

Query: 69  VNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPN--PIPHQQF 108
           + TFMLQI VL+NH NGRDTHVRQI+IYGP      +PHQ F
Sbjct: 132 LRTFMLQIAVLANHQNGRDTHVRQIRIYGPVIEYSEVPHQLF 173

Length = 175

>gnl|CDD|176484 cd08366, APC10, APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination

 Score =  144 bits (366), Expect = 8e-46
 Identities = 54/86 (62%), Positives = 67/86 (77%), Gaps = 1/86 (1%)

Query: 12  VVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNT 71
           V LY+D+KLDESYTPSKIS+RAG   H+L+E++TVEL +P GWV+I L  N      + T
Sbjct: 55  VALYLDYKLDESYTPSKISIRAGTSPHDLQEVRTVELEEPNGWVHIPLEDNRDGK-PLRT 113

Query: 72  FMLQIVVLSNHLNGRDTHVRQIKIYG 97
           F LQI +LSNH NGRDTH+RQIK+YG
Sbjct: 114 FFLQIAILSNHQNGRDTHIRQIKVYG 139

This model represents the single domain protein APC10, a subunit of the anaphase-promoting complex (APC), which is a multi-subunit E3 ubiquitin ligase. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a vital component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC (also known as the cyclosome), is a cell cycle-regulated E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. In mitosis, the APC initiates sister chromatid separation by ubiquitinating the anaphase inhibitor securin and triggers exit from mitosis by ubiquitinating cyclin B. The C-terminus of APC10 binds to CDC27/APC3, an APC subunit that contains multiple tetratrico peptide repeats. APC10 domains are homologous to the DOC1 domains present in the HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein, and the Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase complex. The APC10/DOC1 domain forms a beta-sandwich structure that is related in architecture to the galactose-binding domain-like fold; their sequences are quite dissimilar, however, and are not included here. Length = 139

>gnl|CDD|227485 COG5156, DOC1, Anaphase-promoting complex (APC), subunit 10 [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones]

 Score =  103 bits (259), Expect = 3e-29
 Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 3/116 (2%)

Query: 9   LKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTF 68
           ++ V L++ F  DESYTPSKI VRAG    +++EI +VE+V+P GWV +S+  +   D  
Sbjct: 75  IQSVQLFLSFTQDESYTPSKIGVRAGLTREDVREISSVEVVEPEGWVTLSV-ADKREDDL 133

Query: 69  VNTFMLQIVVLSNHLNGRDTHVRQIKIYGP--RPNPIPHQQFQFTSSEFITYSTVR 122
           +    + +V+ SNH  G+D+HVR IKIY P         +  Q        +    
Sbjct: 134 LKCIYILVVINSNHQEGKDSHVRHIKIYEPSTEEIYYKIEWAQTLPETNNVFQDAI 189

Length = 189

>gnl|CDD|176482 cd08159, APC10-like, APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination

 Score = 50.2 bits (120), Expect = 5e-09
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 6/76 (7%)

Query: 21  DESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLS 80
           D SY PS + V  G    +L+E+K V +    GWV +        D  +    ++I +  
Sbjct: 60  DSSYMPSLVVVYGGHSPSDLRELKDVNIRPSNGWVALL------EDDTLKCPYIEIRIKR 113

Query: 81  NHLNGRDTHVRQIKIY 96
              +G DT +R +++ 
Sbjct: 114 CRSDGIDTRIRGLRLL 129

This family contains the single domain protein, APC10, a subunit of the anaphase-promoting complex (APC), as well as the DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC, a multi-protein complex (or cyclosome), is a cell cycle-regulated, E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. APC10-like DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included in this hierarchy. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling a SCF-ROC1-like E3 ubiquitin ligase complex consisting of Skp1, CUL7, Fbx29 F-box protein, and ROC1 (RING-box protein 1) and promotes ubiquitination. CUL7 is a multi-domain protein with a C-terminal cullin domain that binds ROC1 and a centrally positioned APC10/DOC1 domain. HECTD3 contains a C-terminal HECT domain which contains the active site for ubiquitin transfer onto substrates, and an N-terminal APC10 domain which is responsible for substrate recognition and binding. An APC10/DOC1 domain homolog is also present in HERC2 (HECT domain and RLD2), a large multi-domain protein with three RCC1-like domains (RLDs), additional internal domains including zinc finger ZZ-type and Cyt-b5 (Cytochrome b5-like Heme/Steroid binding) domains, and a C-terminal HECT domain. Recent studies have shown that the protein complex HERC2-RNF8 coordinates ubiquitin-dependent assembly of DNA repair factors on damaged chromosomes. Also included in this hierarchy is an uncharacterized APC10/DOC1-like domain found in a multi-domain protein, which also contains CUB, zinc finger ZZ-type, and EF-hand domains. The APC10/DOC1 domain forms a beta-sandwich structure that is related in architecture to the galactose-binding domain-like fold; their sequences are quite dissimilar, however, and are not included here. Length = 129

>gnl|CDD|176485 cd08664, APC10-HERC2, APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2)

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 21  DESYTPSKISVRAGDGFHNLKEIKTVELVKPT 52
           D SY PS + V  GD  ++LKE+KT+  V  T
Sbjct: 83  DSSYMPSLVVVSGGDSLNSLKELKTIN-VNAT 113

This model represents the APC10/DOC1 domain present in HERC2 (HECT domain and RLD2), a large multi-domain protein with three RCC1-like domains (RLDs), additional internal domains including a zinc finger ZZ-type and Cyt-b5 (Cytochrome b5-like Heme/Steroid binding) domains, and a C-terminal HECT (Homologous to the E6-AP Carboxyl Terminus) domain. The APC10/DOC1 domain of HERC2 is a homolog of the APC10 subunit and the DOC1 domain present in E3 ubiquitin ligases which mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. As suggested by structural relationships between HERC2 and other proteins such as HERC1, the proposed role for HERC2 in protein trafficking and degradation pathways is consistent with observations that mutations in HERC2 lead to neuromuscular secretory vesicle and sperm acrosome defects, other developmental abnormalities, and juvenile lethality of jdf2 mice. Recent studies have shown that the protein complex, HERC2-RNF8, coordinates ubiquitin-dependent assembly of DNA repair factors on damaged chromosomes. Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
PF03256	193	APC10: Anaphase-promoting complex, subunit 10 (APC	100.0
KOG3437	184	consensus Anaphase-promoting complex (APC), subuni	100.0
cd08366	139	APC10 APC10 subunit of the anaphase-promoting comp	100.0
cd08159	129	APC10-like APC10-like DOC1 domains in E3 ubiquitin	100.0
cd08667	131	APC10-ZZEF1 APC10/DOC1-like domain of uncharacteri	100.0
cd08365	131	APC10-like1 APC10-like DOC1 domains of E3 ubiquiti	100.0
cd08665	131	APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit	100.0
COG5156	189	DOC1 Anaphase-promoting complex (APC), subunit 10	100.0
cd08666	134	APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a H	100.0
cd08664	152	APC10-HERC2 APC10-like DOC1 domain present in HERC	99.97
PF07738	135	Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: I	96.52
PF06201	152	PITH: PITH domain; InterPro: IPR010400 The full-le	95.85
PF00754	129	F5_F8_type_C: F5/8 type C domain; InterPro: IPR000	93.77
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	90.3
cd00057	143	FA58C Substituted updates: Jan 31, 2002	89.82

>PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase

Probab=100.00  E-value=2.2e-42  Score=267.65  Aligned_cols=114  Identities=54%  Similarity=0.929  Sum_probs=81.4

Q ss_pred             EeeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCC
Q 033290            6 VFVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNG   85 (122)
Q Consensus         6 ~v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnG   85 (122)
                      -+.|+.|+|||||++||||||++|+|++|++++||+++++++|++|.||+.|++.  +..+++++|++|||+|++|||||
T Consensus        77 ~v~I~~l~iyvd~~~DeSYtPs~I~V~aG~~~~dl~e~~~v~l~~p~GWv~i~l~--~~~~~~~r~~~iqI~I~~nhq~G  154 (193)
T PF03256_consen   77 RVIISSLSIYVDYKQDESYTPSKISVRAGNSPHDLQEVKTVELEEPNGWVHIPLL--DNRGNPLRCFFIQIAILSNHQNG  154 (193)
T ss_dssp             EEEE-EEEEEEEHHHHGGGSEEEEEEEEESSTTT-EEEEEEEECC-EEEEEEE-B--STTTSBEEEEEEEEEEEEECCC-
T ss_pred             CcEEEEEEEEEccCcCCCCCceEEEEEEeCCcCceEEEEEEEecCCCccEEEEeC--CCCCCcEEEEEEEEEEEecccCC
Confidence            4789999999999999999999999999999999999999999999999999998  44558999999999999999999


Q ss_pred             CCceeecEEEEccCCCCC--CCCCc-ccCchhhhccccc
Q 033290           86 RDTHVRQIKIYGPRPNPI--PHQQF-QFTSSEFITYSTV  121 (122)
Q Consensus        86 rDTHIR~ikI~gp~~~~~--~~~~~-~f~s~e~~~f~~i  121 (122)
                      ||||||||||+||++...  ....+ .|+|++|.||++|
T Consensus       155 ~DthiR~iki~gp~~~~~~~~~~~~~~~~s~~~~~~~~~  193 (193)
T PF03256_consen  155 KDTHIRGIKIYGPRPSESSSANDDFHGFSSVEFAMFSTI  193 (193)
T ss_dssp             SS-EESEEEEEEE--------------------------
T ss_pred             CCCceeeEEEECCCCccccccccccCCCchHHhEecccC
Confidence            999999999999998733  23334 6999999999986

The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. One of the subunits of the APC that is required for ubiquitination activity is APC10, a one-domain protein homologous to a sequence element, termed the DOC domain, found in several hypothetical proteins that may also mediate ubiquitination reactions, because they contain combinations of either RING finger (see PDOC00449 from PROSITEDOC), cullin (see PDOC00967 from PROSITEDOC) or HECT (see PDOC50237 from PROSITEDOC) domains [, , ]. The DOC domain consists of a beta-sandwich, in which a five-stranded antiparallel beta-sheet is packed on top of a three stranded antiparallel beta-sheet, exhibiting a 'jellyroll' fold [, ]. Proteins known to contain a DOC domain include: Eucaryotic Doc1/Apc10. Mammalian protein associated with the transcription factor Myc (PAM). Mouse runty-jerky-sterile (RJS) protein. Human HERC2, the ortholog of RJS. ; PDB: 1GQP_B 1JHJ_A.

>KOG3437 consensus Anaphase-promoting complex (APC), subunit 10 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7e-41  Score=256.17  Aligned_cols=115  Identities=47%  Similarity=0.815  Sum_probs=104.3

Q ss_pred             EeeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCC
Q 033290            6 VFVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNG   85 (122)
Q Consensus         6 ~v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnG   85 (122)
                      -+.|+.|+||+||++||||||++|+|++|++++||+++..++|.+|+|||.+++.+  .+++|++||+|||+|++|||||
T Consensus        68 ~~~I~~v~if~~f~~DeSYtPs~i~I~~G~g~~dl~~~~~~el~ep~GWv~lp~~d--~~~~~lr~~~iqi~i~~NHq~G  145 (184)
T KOG3437|consen   68 RVDIQYVVIFLDFKQDESYTPSKIKIRAGNGFNDLWEIQSVELVEPKGWVHLPVLD--NDDKPLRCFMIQIAILSNHQNG  145 (184)
T ss_pred             EEEEEEEEEEEEEecccccCceeEEEEecCChhheeeeeEEEEecCCceEEEeecc--CCCCceEEEEEEEEeecccccC
Confidence            47899999999999999999999999999999999999999999999999999994  4778999999999999999999


Q ss_pred             CCceeecEEEEccCCCCCC--CCCcccCchhhhcccccC
Q 033290           86 RDTHVRQIKIYGPRPNPIP--HQQFQFTSSEFITYSTVR  122 (122)
Q Consensus        86 rDTHIR~ikI~gp~~~~~~--~~~~~f~s~e~~~f~~iR  122 (122)
                      ||||+||||||+|.-..+.  ..-+++++..|.++.+||
T Consensus       146 kDthvR~iri~~p~~e~~~~~~e~~p~~~i~~~~~~~ir  184 (184)
T KOG3437|consen  146 KDTHVRHIRIYAPSIEGPYYKIEWFPLTTIDFVFQNAIR  184 (184)
T ss_pred             ccceeEEEEEecccccCccceehcccCCcHHHHHHhhhC
Confidence            9999999999999643332  123469999999999887

>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination

Probab=100.00  E-value=1.5e-39  Score=240.81  Aligned_cols=91  Identities=59%  Similarity=0.958  Sum_probs=86.3

Q ss_pred             EeeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCC
Q 033290            6 VFVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNG   85 (122)
Q Consensus         6 ~v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnG   85 (122)
                      -+.|+.|+||+||++||||||++|+|++|++++||+|++++++++|.||+.|++++.+ ++++++|++|||+|++|||||
T Consensus        49 ~~~i~~l~i~vd~~~DeSYtP~~I~v~~G~~~~dl~e~~~v~l~~p~Gwv~i~l~~~~-~~~~~~~~~iqi~I~~nh~nG  127 (139)
T cd08366          49 KTDISAVALYLDYKLDESYTPSKISIRAGTSPHDLQEVRTVELEEPNGWVHIPLEDNR-DGKPLRTFFLQIAILSNHQNG  127 (139)
T ss_pred             CcEEEEEEEEEccCCCCCCCCEEEEEEEECCcCchhheEEEEcCCCCEEEEEEccCCC-CCCeeEEEEEEEEEecccCCC
Confidence            3679999999999999999999999999999999999999999999999999999654 468999999999999999999


Q ss_pred             CCceeecEEEEc
Q 033290           86 RDTHVRQIKIYG   97 (122)
Q Consensus        86 rDTHIR~ikI~g   97 (122)
                      ||||||||||||
T Consensus       128 ~DthiR~iki~g  139 (139)
T cd08366         128 RDTHIRQIKVYG  139 (139)
T ss_pred             CCcceeeeEecC
Confidence            999999999997

This model represents the single domain protein APC10, a subunit of the anaphase-promoting complex (APC), which is a multi-subunit E3 ubiquitin ligase. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a vital component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC (also known as the cyclosome), is a cell cycle-regulated E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. In mitosis, the APC initiates sister chromatid separation by ubiquitinating the anaphase inhibitor securin and triggers exit from mitosis by ubiquitinating cyclin B. The C-terminus of APC10 binds to CDC27/APC3, an APC subunit that contains multiple tetratrico peptide repeats. APC10 domains are homologous to the DOC1 domains present in the

>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination

Probab=100.00  E-value=1.7e-38  Score=232.96  Aligned_cols=84  Identities=25%  Similarity=0.508  Sum_probs=79.8

Q ss_pred             EeeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCC
Q 033290            6 VFVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNG   85 (122)
Q Consensus         6 ~v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnG   85 (122)
                      -+.|++|+||+|| +||||||++|+|++|++++||+|++++++++|.||+.|..+      .+++|++|||+|++|||||
T Consensus        46 ~v~i~~l~i~~~~-~DeSYtP~~I~V~~G~~~~dL~e~~~v~l~~p~Gwv~i~~~------~~~~~~~iqI~I~~nhqnG  118 (129)
T cd08159          46 DVLIRVLAIFVDM-ADSSYMPSLVVVYGGHSPSDLRELKDVNIRPSNGWVALLED------DTLKCPYIEIRIKRCRSDG  118 (129)
T ss_pred             CcEEEEEEEEecC-CCCCcCCcEEEEEecCCHHHhheeEEEEecCCCceEEEEcC------CcEEEEEEEEEEHHhccCC
Confidence            3679999999999 99999999999999999999999999999999999999655      3799999999999999999


Q ss_pred             CCceeecEEEE
Q 033290           86 RDTHVRQIKIY   96 (122)
Q Consensus        86 rDTHIR~ikI~   96 (122)
                      |||||||||||
T Consensus       119 ~DthiRgikI~  129 (129)
T cd08159         119 IDTRIRGLRLL  129 (129)
T ss_pred             ccceeeEEEeC
Confidence            99999999996

This family contains the single domain protein, APC10, a subunit of the anaphase-promoting complex (APC), as well as the DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC, a multi-protein complex (or cyclosome), is a cell cycle-regulated, E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. APC10-like DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included in this hierarchy. CUL7 is a member of the Cullin-RING ligase family and f

>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs

Probab=100.00  E-value=3.1e-38  Score=232.19  Aligned_cols=84  Identities=27%  Similarity=0.486  Sum_probs=79.7

Q ss_pred             eeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEEEEe-cCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCC
Q 033290            7 FVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELV-KPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNG   85 (122)
Q Consensus         7 v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v~l~-~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnG   85 (122)
                      +.|++|+||+| ++||||||++|+|+||++++||+|+++++++ +|.||+.|..+      .++++++|||+|++|||||
T Consensus        47 v~i~~l~i~v~-~~DeSYtPs~I~I~~G~~~~dL~e~~~v~l~~~~~Gwv~l~~~------~~~~~~~iqI~I~~nhqnG  119 (131)
T cd08667          47 VVLRHLSIAVA-ATDQSYMPQQVTVSVGRSASSLQEVRDVHIPSNVTGYVTLLEN------ANISYLVVQINIKRCHSDG  119 (131)
T ss_pred             eEEEEEEEEEc-CCCCCcCCcEEEEEecCCHhhheeeEEEEcCCCCceeEEEEcC------CceEEEEEEEEeHHhccCC
Confidence            68999999999 8999999999999999999999999999997 69999999654      5699999999999999999


Q ss_pred             CCceeecEEEEc
Q 033290           86 RDTHVRQIKIYG   97 (122)
Q Consensus        86 rDTHIR~ikI~g   97 (122)
                      ||||||||||+|
T Consensus       120 ~DthIRgiki~G  131 (131)
T cd08667         120 CDTRIHGLKTIG  131 (131)
T ss_pred             ccceeeEEEEcC
Confidence            999999999997

This model represents the APC10/DOC1-like domain present in the uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) of Mus musculus. Members of this family contain EF-hand, APC10, CUB, and zinc finger ZZ-type domains. ZZEF1-like APC10 domains are homologous to the APC10 subunit/DOC1 domains present in E3 ubiquitin ligases, which mediate substrate ubiquitination (or ubiquitylation), and are components of the ubiquitin-26S proteasome pathway for selective proteolytic degradation.

>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination

Probab=100.00  E-value=6.2e-36  Score=220.03  Aligned_cols=83  Identities=27%  Similarity=0.477  Sum_probs=77.6

Q ss_pred             eeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEEEEecC-ceeEEEEccCCCCCCCeEEEEEEEEEeeccccCC
Q 033290            7 FVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKP-TGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNG   85 (122)
Q Consensus         7 v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v~l~~p-~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnG   85 (122)
                      +.|++|+||+|+ +||||||++|+|++|++++||+|++++++++| .|||.|. +     +.+++++||||+|++|||||
T Consensus        48 v~i~~l~l~vd~-~DeSYtP~~I~V~~G~~~~dL~e~~~v~v~~~~~g~v~ll-~-----~~~~~~~~iqI~I~~nhqnG  120 (131)
T cd08365          48 VLVRHLSLAVDA-TDSSYMPQRVVVAGGRSASNLQELRDVNIPPSVTGYVTLL-E-----DATISQPYIEIRIKRCRSDG  120 (131)
T ss_pred             cEEEEEEEEecC-CCCCCCCcEEEEEecCCHHHheeEEEEEccCCCceeEEEc-c-----CCceeeEEEEEEEHHHccCC
Confidence            679999999996 99999999999999999999999999999999 9999983 3     24689999999999999999


Q ss_pred             CCceeecEEEE
Q 033290           86 RDTHVRQIKIY   96 (122)
Q Consensus        86 rDTHIR~ikI~   96 (122)
                      ||||||||||.
T Consensus       121 ~DthiRgikI~  131 (131)
T cd08365         121 IDTRIHGLRIL  131 (131)
T ss_pred             ccceeeEEEeC
Confidence            99999999984

This model represens the APC10-like DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. APC10/DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included here. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling a SCF-ROC1-like E3 ubiquitin ligase complex consisting of Skp1, CUL7, Fbx29 F-box protein, and ROC1 (RING-box protein 1) and promotes ubiquitination. CUL7 is a multi-domain protein with a C-terminal cullin domain that binds ROC1 and a centrally positioned APC10/DOC1 domain. HECTD3 contains a C-te

>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination

Probab=100.00  E-value=3.6e-35  Score=216.00  Aligned_cols=84  Identities=26%  Similarity=0.393  Sum_probs=76.6

Q ss_pred             eeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCce-EeeEEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCC
Q 033290            7 FVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLK-EIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNG   85 (122)
Q Consensus         7 v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~-ev~~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnG   85 (122)
                      +.|++|+||++ ++||||||++|+|++|++++||+ |++++++++|.|||.+ +++     .....++|||+|++|||||
T Consensus        47 v~I~~l~i~v~-~~DeSYtPs~I~V~~G~~~~dL~~e~~~V~~~~~~g~v~l-l~~-----~~~~~~~iqI~I~~nhqnG  119 (131)
T cd08665          47 VVIRQLYMLVA-SEDSSYMPARVVVLGGDSPSCITTELNAVNVSPTASRVVL-LEN-----MTRFWPIIQIRIKRCQQGG  119 (131)
T ss_pred             cEEEEEEEEec-CCCCCcCCeeEEEEecCCHHHhhheeEEEEccCCcceEEE-ccc-----CcccceEEEEEEhhhcccC
Confidence            67999999998 89999999999999999999997 9999999999999997 552     1234479999999999999


Q ss_pred             CCceeecEEEEc
Q 033290           86 RDTHVRQIKIYG   97 (122)
Q Consensus        86 rDTHIR~ikI~g   97 (122)
                      ||||||||||+|
T Consensus       120 ~DthIRgikI~G  131 (131)
T cd08665         120 IDTRVRGLEILG  131 (131)
T ss_pred             ccceeeEEEecC
Confidence            999999999997

This model represents the APC10/DOC1 domain present in CUL7, a subunit of the SCF-ROC1-like E3 Ubiquitin (Ub) ligase complex, which mediates substrate ubiquitination (or ubiquitylation), and is a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling the SCF-ROC1-like E3 Ub ligase complex consisting of the adapter protein Skp1, CUL7, the WD40 repeat-containing F-box Fbw8 (also known as Fbx29), and ROC1 (RING-box protein 1). CUL7 is a large protein with a C-terminal cullin domain that binds ROC1 and additional domains, including an APC10/DOC1 domain. While the Fbw8 protein is responsible for substrate protein recognition, the ROC1 RING domain recruits an Ub-charged E2 Ub-conjugating enzyme for substrate ubiqui

>COG5156 DOC1 Anaphase-promoting complex (APC), subunit 10 [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.1e-35  Score=220.97  Aligned_cols=97  Identities=43%  Similarity=0.751  Sum_probs=92.3

Q ss_pred             EeeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCC
Q 033290            6 VFVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNG   85 (122)
Q Consensus         6 ~v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnG   85 (122)
                      .+.|+.++||++|.+||||||++|.|+||.+++|+.+++++++.||+|||++++.+.+.+| .++|.|||+.|.+|||||
T Consensus        72 r~~I~~v~lfls~t~DeSYtPs~i~v~aG~~~~D~r~~~~vev~ep~Gwv~l~v~d~~~d~-LL~c~~I~v~i~~NHq~G  150 (189)
T COG5156          72 RRYIQSVQLFLSFTQDESYTPSKIGVRAGLTREDVREISSVEVVEPEGWVTLSVADKREDD-LLKCIYILVVINSNHQEG  150 (189)
T ss_pred             EEeeeeehhhhhhhcccccCcceeEEeccCChhhheeEEEEEEEcCCceEEEEecccCcCC-ceeEEEEEEEEecCcccC
Confidence            5789999999999999999999999999999999999999999999999999999777666 899999999999999999


Q ss_pred             CCceeecEEEEccCCCCC
Q 033290           86 RDTHVRQIKIYGPRPNPI  103 (122)
Q Consensus        86 rDTHIR~ikI~gp~~~~~  103 (122)
                      ||||+|+||||.|...+.
T Consensus       151 KDsHvR~ikiy~ps~e~~  168 (189)
T COG5156         151 KDSHVRHIKIYEPSTEEI  168 (189)
T ss_pred             cccceeeEEEeccCCccc
Confidence            999999999999997664

>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination

Probab=100.00  E-value=4.9e-33  Score=205.35  Aligned_cols=81  Identities=30%  Similarity=0.454  Sum_probs=74.9

Q ss_pred             eeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEEEEecC-ceeEEEEccCCCCCCCeEEEEEEEEEeeccccCC
Q 033290            7 FVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKP-TGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNG   85 (122)
Q Consensus         7 v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v~l~~p-~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnG   85 (122)
                      +.|++|+||+|| +||||||++|+|++|+ ++||+|++++++++| .|||.| +++     ...++++|||+|++|||||
T Consensus        52 v~i~~l~i~v~~-~DeSYtP~~I~V~~G~-~~dL~ei~~V~i~~~~~g~V~i-l~~-----~~~~~~~iqI~I~~nhqnG  123 (134)
T cd08666          52 TIIKKLLLTVDA-TDDNYMPKRVAVYGGE-GDNLKKLNDVSIDETLIGDVCI-LED-----MTTHLPVIEIRIKECKDEG  123 (134)
T ss_pred             cEeeEEEEEecC-CCCCcCCcEEEEEecC-ccChhheEEEEeCCCCCCeEEE-ecC-----CceEeEEEEEEeHHhccCC
Confidence            569999999999 9999999999999999 999999999999986 999999 442     3478889999999999999


Q ss_pred             CCceeecEEE
Q 033290           86 RDTHVRQIKI   95 (122)
Q Consensus        86 rDTHIR~ikI   95 (122)
                      ||||||||||
T Consensus       124 ~DthIRgiKI  133 (134)
T cd08666         124 IDVRIRGIKI  133 (134)
T ss_pred             ccceeeEEEe
Confidence            9999999998

This model represents the APC10/DOC1 domain present in HECTD3, a HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein. HECT E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), and are a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. They also regulate the trafficking of many receptors, channels, transporters and viral proteins. HECTD3 (HECT domain-containing protein3) contains a C-terminal HECT domain with the active site for ubiquitin transfer onto substrates, and an N-terminal APC10/DOC1 domain, which is responsible for substrate recognition and binding. HECTD3 specifically recognizes the Trio-binding protein, Tara (Trio-associated repeat on actin), implicated in regulating actin cytoskeletal, cell motility and cell growth. Tara also binds to TRF1 and may participate i

>cd08664 APC10-HERC2 APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2)

Probab=99.97  E-value=2.5e-30  Score=194.33  Aligned_cols=83  Identities=25%  Similarity=0.376  Sum_probs=75.8

Q ss_pred             eeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCCC
Q 033290            7 FVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGR   86 (122)
Q Consensus         7 v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnGr   86 (122)
                      +.|++|+||+| .+||||||++|+|++|++++||+|++++++.+|.|||+|...      ...+.++|||+|++||||||
T Consensus        70 v~I~~L~i~vd-~~DeSY~Ps~I~V~~G~~~~~L~el~~V~i~~~~~~v~Ll~~------~~~~~~~IqI~I~~ch~~Gi  142 (152)
T cd08664          70 VLIHSLKIIVD-PADSSYMPSLVVVSGGDSLNSLKELKTINVNATDTLVTLLQD------VKEYYRYIEIAIKQCRNNGI  142 (152)
T ss_pred             cEEEEEEEEec-CCCCCcCCceEEEEecCChhhhheeEEEEcCCCCceEEeccC------CCeeeEEEEEEhHhhhhCCC
Confidence            68999999999 799999999999999999999999999999999999998532      23456799999999999999


Q ss_pred             CceeecEEEE
Q 033290           87 DTHVRQIKIY   96 (122)
Q Consensus        87 DTHIR~ikI~   96 (122)
                      |||||||||.
T Consensus       143 Dt~IrglkI~  152 (152)
T cd08664         143 DCKIHGLNII  152 (152)
T ss_pred             cceeeEEEeC
Confidence            9999999983

This model represents the APC10/DOC1 domain present in HERC2 (HECT domain and RLD2), a large multi-domain protein with three RCC1-like domains (RLDs), additional internal domains including a zinc finger ZZ-type and Cyt-b5 (Cytochrome b5-like Heme/Steroid binding) domains, and a C-terminal HECT (Homologous to the E6-AP Carboxyl Terminus) domain. The APC10/DOC1 domain of HERC2 is a homolog of the APC10 subunit and the DOC1 domain present in E3 ubiquitin ligases which mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. As suggested by structural relationships between HERC2 and other proteins such as HERC1, the proposed role for HERC2 in protein trafficking and degradation pathways is consistent with observations that mutations in HERC2 lead to neuromuscular secretory vesicle and sperm acrosome defects, other develo

>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development

Probab=96.52  E-value=0.049  Score=38.99  Aligned_cols=88  Identities=16%  Similarity=0.100  Sum_probs=52.9

Q ss_pred             eeeeeeeeeeecCCC--CCCCcceEEEEeCCCcCC--ceEeeEEEE-ecCceeEEEEccCCCCCCCeEEEEEEEEEeecc
Q 033290            7 FVLKLVVLYVDFKLD--ESYTPSKISVRAGDGFHN--LKEIKTVEL-VKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSN   81 (122)
Q Consensus         7 v~I~~i~ly~d~~~D--ESYTP~~I~I~~G~~~~d--L~ev~~v~l-~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~N   81 (122)
                      +.|+.|.|.--....  -|-.|+.+.|.+-....+  ...+...+. .+-.++...++....    ...+.+|++.|++|
T Consensus        42 I~v~~v~i~h~~~~~~~~sSapk~f~V~g~~~~~~~~~~~LG~f~y~~~~~~~QtF~l~~~~----~~~~~~i~l~i~sN  117 (135)
T PF07738_consen   42 IYVTSVTIEHVEKSIAPFSSAPKDFEVWGSVDYPDEEWVLLGEFEYDSDGNSIQTFPLPRPP----RQPVRYIKLRILSN  117 (135)
T ss_dssp             EEEEEEEEE---GGGSG-TTSB-EEEEEEESSSSTS--EEEEEEE--TTS-SEEEEE-SS------S--EEEEEEEE--B
T ss_pred             EEEEEEEEEEeccccCCcCCCCcEEEEEEEecccccceeeeceEEEcCCcCccEeeeeccCc----hhcCcEEEEEEEcC
Confidence            344555552222222  689999999997555444  578888886 455778888887321    12788999999999


Q ss_pred             ccCCCCceeecEEEEcc
Q 033290           82 HLNGRDTHVRQIKIYGP   98 (122)
Q Consensus        82 hqnGrDTHIR~ikI~gp   98 (122)
                      |=+..=|-|-++||+|-
T Consensus       118 ~G~~~ytclyr~rVhG~  134 (135)
T PF07738_consen  118 HGNEEYTCLYRFRVHGE  134 (135)
T ss_dssp             SS-SSEEEE-EEEEEEE
T ss_pred             CCCCceEEEEEEEEEee
Confidence            97777799999999994

The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and Sad1 share a common C-terminal region that is often termed the SUN (Sad1 and UNC) domain [, ]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 []. The SUN domain of Sun2 has been demonstrated to be in the periplasm []. ; PDB: 4DXT_A 3UNP_A 4DXR_A 4DXS_A.

>PF06201 PITH: PITH domain; InterPro: IPR010400 The full-length, Txnl1, protein which is a probable component of the 32 kDa 26S proteasome, uses its C-terminal, PITH, domain to associate specifically with the 26S proteasome

Probab=95.85  E-value=0.048  Score=40.81  Aligned_cols=85  Identities=22%  Similarity=0.226  Sum_probs=54.2

Q ss_pred             eeeeeeeeeeecCCCCCCCcceEEEEeC----CCcCCc---eEeeEEEEec--CceeEEEEccCCCCCCCeEEEEEEEEE
Q 033290            7 FVLKLVVLYVDFKLDESYTPSKISVRAG----DGFHNL---KEIKTVELVK--PTGWVYISLSGNDPRDTFVNTFMLQIV   77 (122)
Q Consensus         7 v~I~~i~ly~d~~~DESYTP~~I~I~~G----~~~~dL---~ev~~v~l~~--p~GWv~i~l~~~~~~~~~l~~~~iQI~   77 (122)
                      |.|++|.|-..-  |+.-.|++|++++-    -+|.|.   .-..++++.+  ..||+.++++..    +...+.-|+|-
T Consensus        57 Vkl~si~i~~~~--~~~~~P~~iKlf~N~~~~ldF~~~~~~~p~q~~~l~~~~~~~~~~~~Lk~~----KFqnV~sLtif  130 (152)
T PF06201_consen   57 VKLHSIIIKGPP--DDDSAPKTIKLFINQRPNLDFDDAESIKPTQELELTEEDSDGGVEYPLKFV----KFQNVNSLTIF  130 (152)
T ss_dssp             EEEEEEEEE-----STTTSEEEEEEEES-SS---CCHHCCS--SCEEE--TTTCCCT--EE--TT----T-TTEEEEEEE
T ss_pred             eEEEEEEEEecc--CCCCCCeEEEEEECCCCCcCccccccCCCCceEEcCccccCCceEeeeeee----ccCCccEEEEE
Confidence            444544443321  89999999999997    234444   4455788876  889999998832    45678899999


Q ss_pred             eeccccCCCCceeecEEEEc
Q 033290           78 VLSNHLNGRDTHVRQIKIYG   97 (122)
Q Consensus        78 I~~NhqnGrDTHIR~ikI~g   97 (122)
                      |..|+-++--|+|-.|.++|
T Consensus       131 ~~~n~g~~~~T~I~~i~l~G  150 (152)
T PF06201_consen  131 FEDNQGGDDVTRIYYIGLRG  150 (152)
T ss_dssp             EEEETT--SS-EESEEEEEE
T ss_pred             EeCCcCCCccEEEEEEEEEe
Confidence            99999989999999999998

PITH derives from proteasome-interacting thioredoxin domain which this entry represents [].; PDB: 1XOY_A 1WWY_A.

>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain

Probab=93.77  E-value=1.3  Score=29.49  Aligned_cols=77  Identities=13%  Similarity=0.050  Sum_probs=55.4

Q ss_pred             EeeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEE--EEecCceeEEEEccCCCCCCCeEEEEEEEEEeecccc
Q 033290            6 VFVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTV--ELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHL   83 (122)
Q Consensus         6 ~v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v--~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~Nhq   83 (122)
                      .+.|..|.|+.-. .+..+.|..+.|.+.++-.+..++...  ......+.+.+.+.      .++.+.+|+|.+.+-..
T Consensus        47 ~~~i~~i~i~~~~-~~~~~~~~~~~i~~s~dg~~w~~~~~~~~~~~~~~~~~~~~~~------~~~~~ryiri~~~~~~~  119 (129)
T PF00754_consen   47 PYTISGISIQFRN-DGNNGRPKSFKIEYSNDGSNWTTVASQFYGNTNSGSVVTISFF------PPVKARYIRITVTSWNG  119 (129)
T ss_dssp             EEEEEEEEEEEES-STTTEEEEEEEEEEESSSSSEEEEEETEEEESSSSSSEEEEEE------EEEEEEEEEEEEEEEES
T ss_pred             eEecceeeecccc-cccceeeeeeeeeeecccccccccccceeeccCCCceEEEEeC------CCeEEEEEEEEEEEECC
Confidence            3567888888774 333379999999999888888888774  44456666776666      57999999999987444


Q ss_pred             CCCCce
Q 033290           84 NGRDTH   89 (122)
Q Consensus        84 nGrDTH   89 (122)
                      ++.-++
T Consensus       120 ~~~~~~  125 (129)
T PF00754_consen  120 NNGWVS  125 (129)
T ss_dssp             CSSEEE
T ss_pred             CCceEE
Confidence            444333

In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [, , ] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells []. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [, ]. It forms an amphipathic alpha-helix, which binds to the membrane []. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [, , ]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 from SWISSPROT []. +------------------------------------------------------------------------+ | +-+ | | | | | CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC 'C': conserved cysteine involved in a disulphide bond. 'c': cysteine involved in a disulphide bond in MFGM Q08431 from SWISSPROT. 'x': any amino acid. upper case letters: conserved residues. ; GO: 0007155 cell adhesion; PDB: 2J22_A 3CQO_C 1SDD_B 2VCA_A 2VC9_A 2VCC_A 2VCB_A 2J1E_A 2J7M_A 2J1A_A ....

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=90.30  E-value=0.82  Score=46.12  Aligned_cols=80  Identities=26%  Similarity=0.422  Sum_probs=65.3

Q ss_pred             eeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEEEEe-cCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCCCCc
Q 033290           10 KLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELV-KPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDT   88 (122)
Q Consensus        10 ~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v~l~-~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnGrDT   88 (122)
                      +.+++++|-..|+-|-=+-|...+|.-..||..++.++|+ .--||+.--+.++         ..|||..+.-.   --.
T Consensus      2936 ~~vSv~vDNsRD~G~kvtSmtF~t~~a~~~~~~ikqv~LdS~~~GWvt~~l~D~---------~~IkIelKGPe---~t~ 3003 (3738)
T KOG1428|consen 2936 RYVSVHVDNSRDLGNKVTSMTFLTGKAVEDLCRIKQVDLDSRHIGWVTSELPDN---------HIIKIELKGPE---NTL 3003 (3738)
T ss_pred             eEEEEEeccchhcccceeeeeeecccchhhhhcceeecccccccceeeeecCCc---------ceEEEEecCCC---ccc
Confidence            4678999999999999999999999999999999999999 5689998776621         46677764322   136


Q ss_pred             eeecEEEEccCCC
Q 033290           89 HVRQIKIYGPRPN  101 (122)
Q Consensus        89 HIR~ikI~gp~~~  101 (122)
                      +|||++|+|-+-.
T Consensus      3004 RvRQv~vLG~~Ae 3016 (3738)
T KOG1428|consen 3004 RVRQVKVLGWKAE 3016 (3738)
T ss_pred             eeeeeeecccchh
Confidence            8999999997753

>cd00057 FA58C Substituted updates: Jan 31, 2002

Probab=89.82  E-value=5  Score=27.73  Aligned_cols=63  Identities=10%  Similarity=0.053  Sum_probs=38.8

Q ss_pred             CcceEEEEeCCCcCCceEeeE----EEEe-cCc--eeEEEEccCCCCCCCeEEEEEEEEEeeccccCCCCceeecEEEEc
Q 033290           25 TPSKISVRAGDGFHNLKEIKT----VELV-KPT--GWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYG   97 (122)
Q Consensus        25 TP~~I~I~~G~~~~dL~ev~~----v~l~-~p~--GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnGrDTHIR~ikI~g   97 (122)
                      -|....|.++++-.++..+..    ..+. ++.  ..+.+.+.      .++.+.||+|.+..++.   -..| .+.|||
T Consensus        74 ~~~~~~i~~s~dg~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~------~pv~aRyvRl~~~~~~~---~~~l-e~evyG  143 (143)
T cd00057          74 WVTSYKVQYSLDGETWTTYKDKGEEKVFTGNSDGSTPVTNDFP------PPIVARYIRILPTTWNG---NISL-RLELYG  143 (143)
T ss_pred             eeEEEEEEEECCCCCEeEEEcCCcEEEEeCCcCCCeEEEEeCC------CCEEEEEEEEEEeecCC---ccEE-EEEEcC
Confidence            355666666655555555443    2222 121  34445554      46899999999998665   6777 888876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	122
1jhj_A	171	Crystal Structure Of The Apc10DOC1 SUBUNIT OF THE H		3e-24
1gqp_A	221	Apc10DOC1 SUBUNIT OF S. CEREVISIAE Length = 221		1e-08

>pdb|1JHJ|A Chain A, Crystal Structure Of The Apc10DOC1 SUBUNIT OF THE HUMAN Anaphase-Promoting Complex Length = 171

Iteration: 1
 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 63/77 (81%), Gaps = 2/77 (2%)
Query: 22  ESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSN 81
           ESYTPSKISVR G+ FHNL+EI+ +ELV+P+GW+++ L+ N  + T   TFM+QI VL+N
Sbjct: 86  ESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDNHKKPT--RTFMIQIAVLAN 143
Query: 82  HLNGRDTHVRQIKIYGP 98
           H NGRDTH+RQIKIY P
Sbjct: 144 HQNGRDTHMRQIKIYTP 160

>pdb|1GQP|A Chain A, Apc10DOC1 SUBUNIT OF S. CEREVISIAE Length = 221

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 42/81 (51%)
Query: 22  ESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSN 81
           ESY PS + V AG    + +  K +E+    GWV +    N   D  +    ++++   N
Sbjct: 117 ESYAPSLVKVYAGHSPSDARFYKMLEVRNVNGWVALRFLDNREDDQLLKCQFIRLLFPVN 176
Query: 82  HLNGRDTHVRQIKIYGPRPNP 102
           H NG+DTH+R I++Y P   P
Sbjct: 177 HENGKDTHLRGIRLYVPSNEP 197

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	122
1gqp_A	221	DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome,	7e-43
1jhj_A	171	APC10; beta sandwich, jellyroll, cell cycle; 1.60A	2e-37

>1gqp_A DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, ubiquitination, E3 ubiquitin ligase, beta sandwich, jelly roll; 2.2A {Saccharomyces cerevisiae} SCOP: b.18.1.9 Length = 221

 Score =  139 bits (350), Expect = 7e-43
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 1/108 (0%)

Query: 9   LKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTF 68
           + ++ ++     DESY PS + V AG    + +  K +E+    GWV +    N   D  
Sbjct: 104 ICVMAIFFSMIADESYAPSLVKVYAGHSPSDARFYKMLEVRNVNGWVALRFLDNREDDQL 163

Query: 69  VNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNP-IPHQQFQFTSSEF 115
           +    ++++   NH NG+DTH+R I++Y P   P     ++  T  E 
Sbjct: 164 LKCQFIRLLFPVNHENGKDTHLRGIRLYVPSNEPHQDTHEWAQTLPET 211

>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens} SCOP: b.18.1.9 Length = 171

 Score =  123 bits (311), Expect = 2e-37
 Identities = 53/94 (56%), Positives = 70/94 (74%), Gaps = 2/94 (2%)

Query: 9   LKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTF 68
           +K + +Y D+K DESYTPSKISVR G+ FHNL+EI+ +ELV+P+GW+++ L+ N      
Sbjct: 73  VKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTDN--HKKP 130

Query: 69  VNTFMLQIVVLSNHLNGRDTHVRQIKIYGPRPNP 102
             TFM+QI VL+NH NGRDTH+RQIKIY P    
Sbjct: 131 TRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEES 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	122
1gqp_A	221	DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome,	100.0
1jhj_A	171	APC10; beta sandwich, jellyroll, cell cycle; 1.60A	100.0
3f2z_A	159	Uncharacterized protein BF3579; the present C-term	97.53
3ggl_A	169	Putative chitobiase; X-RAY, structure genomics, NE	97.21
2yc2_A	139	IFT25, intraflagellar transport protein 25; transp	96.53
2j1a_A	150	Hyaluronidase, CBM32; protein-carbohydrate interac	96.5
1tvg_A	153	LOC51668 protein; cell cycle, structural genomics,	95.73
1xoy_A	161	Hypothetical protein AT3G04780.1; structural genom	94.54
4a41_A	161	GH89_CBM32-5, alpha-N-acetylglucosaminidase family	94.32
1w8o_A	601	Bacterial sialidase; 3D-structure, glycosidase, hy	93.52
2jda_A	145	Yecbm32; hypothetical protein, carbohydrate- bindi	92.54
4dxt_A	198	SUN domain-containing protein 2; beta-sandwich, LI	91.01
1wwy_A	171	Thioredoxin-like protein 1; structural genomics, h	91.0
2v72_A	143	CBM32, EXO-alpha-sialidase; galactose, bacterial p	88.41
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	82.82

>1gqp_A DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, ubiquitination, E3 ubiquitin ligase, beta sandwich, jelly roll; 2.2A {Saccharomyces cerevisiae} SCOP: b.18.1.9

Probab=100.00  E-value=2.5e-43  Score=276.72  Aligned_cols=117  Identities=25%  Similarity=0.471  Sum_probs=84.3

Q ss_pred             EeeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCC
Q 033290            6 VFVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNG   85 (122)
Q Consensus         6 ~v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnG   85 (122)
                      -+.|+.|+||+||++||||||++|+|++|++++||+|++++++++|.||+.|+++++.+.+++++|++|||+|++|||||
T Consensus       101 ~v~I~~L~iyvD~~~DeSYtPs~I~V~aG~~~~dL~e~~~v~l~~p~GWv~i~l~d~~~~~~~l~~~~IQI~I~~nhqnG  180 (221)
T 1gqp_A          101 RMDICVMAIFFSMIADESYAPSLVKVYAGHSPSDARFYKMLEVRNVNGWVALRFLDNREDDQLLKCQFIRLLFPVNHENG  180 (221)
T ss_dssp             EEEECEEEEEEEHHHHGGGSEEEEEEEEESSTTTCEEEEEEEEEECEEEEEECCC--------EEEEEEEEEEEEESTTC
T ss_pred             CceEEEEEEEECCCCCCCCCCEEEEEEEeCCcCcceEEEEEEecCCCEEEEEEccCCCCCCCeeEEEEEEEEEeeccCCC
Confidence            47899999999999999999999999999999999999999999999999999987766678899999999999999999


Q ss_pred             CCceeecEEEEccCCCCCCCC---Cccc-CchhhhcccccC
Q 033290           86 RDTHVRQIKIYGPRPNPIPHQ---QFQF-TSSEFITYSTVR  122 (122)
Q Consensus        86 rDTHIR~ikI~gp~~~~~~~~---~~~f-~s~e~~~f~~iR  122 (122)
                      ||||||||||+||+++.....   .-.| ++|+|.+|++||
T Consensus       181 rDThIRqIkI~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~r  221 (221)
T 1gqp_A          181 KDTHLRGIRLYVPSNEPHQDTHEWAQTLPETNNVFQDAILR  221 (221)
T ss_dssp             SSCEESCEEEEEEC---------------------------
T ss_pred             CccEEEEEEEEccCCccchhccccccCcccChhhhhheecC
Confidence            999999999999998665421   1144 899999999998

>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens} SCOP: b.18.1.9

Probab=100.00  E-value=1.7e-38  Score=241.08  Aligned_cols=96  Identities=54%  Similarity=0.915  Sum_probs=87.4

Q ss_pred             EeeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCC
Q 033290            6 VFVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNG   85 (122)
Q Consensus         6 ~v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnG   85 (122)
                      -+.|++|+||+||++||||||++|+|++|++++||+|++++++++|.||+.|++.+  ..++++++|+|||+|++|||||
T Consensus        70 ~v~i~~l~i~vd~~~DeSYtPs~I~v~aG~~~~dL~ei~~v~l~~p~Gwv~i~l~~--~~~~~~~~~~IQI~I~~nhqnG  147 (171)
T 1jhj_A           70 KTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLTD--NHKKPTRTFMIQIAVLANHQNG  147 (171)
T ss_dssp             EEEECEEEEEEEHHHHGGGSEEEEEEEEESSTTSCEEEEEEECSSCEEEEEEECBC--TTSSBEEEEEEEEEEEEEGGGC
T ss_pred             CceEEEEEEEECCCCCCCCCcEEEEEEEeCCcccceeEEEEEccCCCEEEEEEecc--CCCCceeEEEEEEEEeccCCCC
Confidence            36799999999999999999999999999999999999999999999999999984  3457899999999999999999


Q ss_pred             CCceeecEEEEccCCCCC
Q 033290           86 RDTHVRQIKIYGPRPNPI  103 (122)
Q Consensus        86 rDTHIR~ikI~gp~~~~~  103 (122)
                      ||||||||||+||+.+.+
T Consensus       148 ~DthIR~ikI~G~~~~~~  165 (171)
T 1jhj_A          148 RDTHMRQIKIYTPVEESS  165 (171)
T ss_dssp             SSCEECEEEEEEEC----
T ss_pred             CccEEEEEEEEecCCCCc
Confidence            999999999999987654

>3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is predominantly composed of B strands., structural genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB: 2kd7_A

Probab=97.53  E-value=0.0017  Score=46.01  Aligned_cols=88  Identities=11%  Similarity=0.095  Sum_probs=68.7

Q ss_pred             eeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCCC
Q 033290            7 FVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGR   86 (122)
Q Consensus         7 v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnGr   86 (122)
                      ..|..|.+.-.. ....+.|+...|.+.++-.+..++...++....++..+.+.       +.++.||+|.++++..++.
T Consensus        65 ~~i~~v~~~~~~-~~~~~~~~~~~I~~S~Dg~~W~~v~~~~~~~~~~~~~~~~~-------~~~aRYVRi~~~~~~~~~~  136 (159)
T 3f2z_A           65 VKIAQIELLPRG-RGSNNPIKVVRFEASEDGTNWESIGQFGFTNQDAALKYYVK-------SSTARYIKLVIPDGVGNGT  136 (159)
T ss_dssp             EEEEEEEEEECC-TTCCCCCCEEEEEEESSSSSCEEEEEEECCCCSSCEEECCC-------CEEEEEEEEEECSSSSCCS
T ss_pred             eEEEEEEEEecC-CCCCCCeeEEEEEEEcCCCCeEEeEEeecCCCCccEEEecC-------CceEEEEEEEEEeccCCCc
Confidence            456777765442 23467899999999888888999888877655566666443       6899999999999998878


Q ss_pred             CceeecEEEEccCCCC
Q 033290           87 DTHVRQIKIYGPRPNP  102 (122)
Q Consensus        87 DTHIR~ikI~gp~~~~  102 (122)
                      -..|.-|+|||+....
T Consensus       137 ~~si~Ei~vy~~~~~~  152 (159)
T 3f2z_A          137 VAAIRELDVRGTVVNL  152 (159)
T ss_dssp             CCEEEEEEEEEEECC-
T ss_pred             eEEEEEEEEEcCCCCc
Confidence            8999999999987643

>3ggl_A Putative chitobiase; X-RAY, structure genomics, NESG, BTR324A, Q8A9F0_bactn, BT_0865, PSI-2, protein structure initiative; 3.00A {Bacteroides thetaiotaomicron}

Probab=97.21  E-value=0.007  Score=43.43  Aligned_cols=88  Identities=10%  Similarity=0.089  Sum_probs=68.4

Q ss_pred             eeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCCC
Q 033290            7 FVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGR   86 (122)
Q Consensus         7 v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnGr   86 (122)
                      ..|..|.+.-. .....+.|+...|.+.++-.+...+...++....++..+.+.       +.++.||+|.++++..++.
T Consensus        75 ~~i~~v~~~~r-~~~~~~~~~~y~I~~S~Dg~~W~~v~~~~~~~~~~~~~~~f~-------~~~aRYVRi~~~~~~~~~~  146 (169)
T 3ggl_A           75 IQIAQVELLPR-GRGSNNPIKVVEFAASEDNVNWTPIGRFGFTNQDAALEYYVK-------SIKARYIRLTIPDDGGNST  146 (169)
T ss_dssp             EEEEEEEEEEC-CTTCCCCCCEEEEEEESSSSCCEEEEEEECCCCSSCEEECCC-------CEEEEEEEEEECSSSSCCS
T ss_pred             EEEeEEEEEec-CCCCCCCeeEEEEEEeCCCCCcEEeEEEEeccCCCcEEEEec-------CceEEEEEEEEEeCCCCCc
Confidence            45677766443 223478899999999988889999988877655566666443       6899999999999988778


Q ss_pred             CceeecEEEEccCCCC
Q 033290           87 DTHVRQIKIYGPRPNP  102 (122)
Q Consensus        87 DTHIR~ikI~gp~~~~  102 (122)
                      -..|.-|+|||+....
T Consensus       147 ~~si~Ei~vy~~~~~~  162 (169)
T 3ggl_A          147 VAAIRELDVKGTIINL  162 (169)
T ss_dssp             CCEEEEEEEEEEECC-
T ss_pred             eEEEEEEEEEcCCCCc
Confidence            8999999999987643

>2yc2_A IFT25, intraflagellar transport protein 25; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_A

Probab=96.53  E-value=0.02  Score=40.46  Aligned_cols=77  Identities=16%  Similarity=0.203  Sum_probs=56.4

Q ss_pred             eeeeeeeeeeecCCCCCCCcceEEEEeCCCc--CCceEeeEEEEecCceeEEE-EccCCCCCCCeEEEEEEEEEeecccc
Q 033290            7 FVLKLVVLYVDFKLDESYTPSKISVRAGDGF--HNLKEIKTVELVKPTGWVYI-SLSGNDPRDTFVNTFMLQIVVLSNHL   83 (122)
Q Consensus         7 v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~--~dL~ev~~v~l~~p~GWv~i-~l~~~~~~~~~l~~~~iQI~I~~Nhq   83 (122)
                      +.|+.+.|.       +|.++.+.|.+..+-  .+++++...++.+..|+..+ .+.      .+.++.+|+|.|++++.
T Consensus        59 ~~is~~~i~-------~~~~k~~~ie~s~~~~p~~w~~i~~~~f~~~~~~~q~~~f~------~~~~a~~lrl~i~s~~d  125 (139)
T 2yc2_A           59 IRVSKITTL-------SLNVRKLAVEKCDQDKPDQFEKVFEVELANRGDRLQTEVHQ------VNIRAKYLKFILLQGHG  125 (139)
T ss_dssp             EEEEEEEEE-------EESEEEEEEEEECSSSCCCCEEEEEEECCCC--CCEEEEEE------EEEEEEEEEEEEEEESS
T ss_pred             eEEEEEEEE-------ecCCcEEEEEEecCCCCCceEEEEEEEeecCCCCceEEEcc------CCCcEEEEEEEEEeccC
Confidence            456666665       245899999887764  69999988888888786543 232      13568999999999998


Q ss_pred             CCCCceeecEEEEcc
Q 033290           84 NGRDTHVRQIKIYGP   98 (122)
Q Consensus        84 nGrDTHIR~ikI~gp   98 (122)
                      +  =+.|..|+|+|-
T Consensus       126 ~--f~~iy~~~v~G~  138 (139)
T 2yc2_A          126 E--FATVNRVSVVGG  138 (139)
T ss_dssp             S--CCEEEEEEEEEC
T ss_pred             c--eEEEEEEEEEec
Confidence            8  399999999983

>2j1a_A Hyaluronidase, CBM32; protein-carbohydrate interaction, glycoside hydrolase, GH84C, hydrolase; HET: GAL; 1.49A {Clostridium perfringens} PDB: 2j1e_A* 2j7m_A*

Probab=96.50  E-value=0.054  Score=36.62  Aligned_cols=82  Identities=16%  Similarity=0.172  Sum_probs=59.6

Q ss_pred             eeeeeeeeeeecCCC-CCCCcceEEEEeCCCcCCceEeeEEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeecccc--
Q 033290            7 FVLKLVVLYVDFKLD-ESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHL--   83 (122)
Q Consensus         7 v~I~~i~ly~d~~~D-ESYTP~~I~I~~G~~~~dL~ev~~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~Nhq--   83 (122)
                      ..|..|.++-.  .| ....|....|.+.++-.+...+...+.....++..+.+.       +..+.||+|.++.++.  
T Consensus        63 ~~i~~v~~~~~--~~~~~~~~~~~~i~~S~Dg~~w~~v~~~~~~~~~~~~~~~~~-------~~~aryvRi~~~~~~~~~  133 (150)
T 2j1a_A           63 YEINKVKYAPR--QDSKNGRITGYKVSVSLDGENFTEVKTGTLEDNAAIKFIEFD-------SVDAKYVRLDVTDSVSDQ  133 (150)
T ss_dssp             EEEEEEEEECC--SSCCTTEEEEEEEEEESSSSSEEEEEEEECCSSSSCEEEEEE-------EEEEEEEEEEEEEEECCC
T ss_pred             eEEeEEEEeec--CCCCCCCEEEEEEEEEcCCCceEEEEEeeECCCCceEEEEEC-------CeEEEEEEEEEEeccccc
Confidence            45667777543  23 356788899998877777777777666655567777765       6899999999998762  


Q ss_pred             ---CCCCceeecEEEEc
Q 033290           84 ---NGRDTHVRQIKIYG   97 (122)
Q Consensus        84 ---nGrDTHIR~ikI~g   97 (122)
                         .|.-..|..|+|||
T Consensus       134 ~~~~~~~~~i~Ei~v~G  150 (150)
T 2j1a_A          134 ANGRGKFATAAEVNVHG  150 (150)
T ss_dssp             --CTTTCCEESEEEEEC
T ss_pred             ccCCCceEEEEEEEEeC
Confidence               23448899999987

>1tvg_A LOC51668 protein; cell cycle, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Homo sapiens} SCOP: b.18.1.9 PDB: 1xpw_A

Probab=95.73  E-value=0.093  Score=38.06  Aligned_cols=78  Identities=12%  Similarity=0.182  Sum_probs=59.1

Q ss_pred             eeeeeeeeeeecCCCCCCCcceEEEEeCCCcC--CceEeeEEEEecCceeEEE-EccCCCCCCCeEEEEEEEEEeecccc
Q 033290            7 FVLKLVVLYVDFKLDESYTPSKISVRAGDGFH--NLKEIKTVELVKPTGWVYI-SLSGNDPRDTFVNTFMLQIVVLSNHL   83 (122)
Q Consensus         7 v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~--dL~ev~~v~l~~p~GWv~i-~l~~~~~~~~~l~~~~iQI~I~~Nhq   83 (122)
                      +.|+.+.+..       |.++.+.|.+..+-.  +++++...++.+..|+..+ .+.      .+.++.+|+|.|++++.
T Consensus        67 ~~is~~~i~~-------~~vk~~~ie~s~d~~p~~w~~i~e~ef~~~~n~~Q~~~~~------~~~~a~~lRl~i~s~~d  133 (153)
T 1tvg_A           67 VRIERLVIQS-------YFVQTLKIEKSTSKEPVDFEQWIEKDLVHTEGQLQNEEIV------AHGSATYLRFIIVSAFD  133 (153)
T ss_dssp             EEEEEEEEEE-------ESEEEEEEEEECSSSSCCCEEEEEEECCCCTTCCEEEEEC------CCEEEEEEEEEEEEESS
T ss_pred             eEEEEEEEEe-------cCCEEEEEEEECCCCCcceEEeEEEEecCCCCcEEEEEcC------CCceeEEEEEEEEcccc
Confidence            4566666652       358888888877664  9999999999888776433 333      14789999999998888


Q ss_pred             CCCCceeecEEEEccC
Q 033290           84 NGRDTHVRQIKIYGPR   99 (122)
Q Consensus        84 nGrDTHIR~ikI~gp~   99 (122)
                      .=  ..|..|.|+|-.
T Consensus       134 ~f--v~Iy~l~v~G~~  147 (153)
T 1tvg_A          134 HF--ASVHSVSAEGTV  147 (153)
T ss_dssp             SC--CEEEEEEEEEEE
T ss_pred             cE--EEEEEEEEEEEE
Confidence            74  888889999854

>1xoy_A Hypothetical protein AT3G04780.1; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: b.18.1.26

Probab=94.54  E-value=0.17  Score=37.33  Aligned_cols=84  Identities=23%  Similarity=0.271  Sum_probs=59.5

Q ss_pred             EeeeeeeeeeeecCCCCCCCcceEEEEeCCC---cC---CceEeeEEEEecCc-eeEEEEccCCCCCCCeEEEEEEEEEe
Q 033290            6 VFVLKLVVLYVDFKLDESYTPSKISVRAGDG---FH---NLKEIKTVELVKPT-GWVYISLSGNDPRDTFVNTFMLQIVV   78 (122)
Q Consensus         6 ~v~I~~i~ly~d~~~DESYTP~~I~I~~G~~---~~---dL~ev~~v~l~~p~-GWv~i~l~~~~~~~~~l~~~~iQI~I   78 (122)
                      .|.|++|.|.-   .++ ..|++|++++-..   |.   |+.-..++++.+.. +|..++++-.    +...+.-|+|-|
T Consensus        69 ~VKl~Si~i~~---~~~-~~Pk~iKlf~N~~~ldFd~a~~~~p~Q~~el~~~~~~g~~~~lr~v----kFqnV~sLtlf~  140 (161)
T 1xoy_A           69 VIKLHSFAIKG---PEE-EGPKTVKFFSNKEHMCFSNVNDFPPSDTAELTEENLKGKPVVLKYV----KFQNVRSLTIFI  140 (161)
T ss_dssp             EECEEEEEEEC---CTT-TSEEEEEEEESCSCCCHHHHTTSCCSEEECCCTTGGGTCCEECCTT----TCSCEEEEEEEE
T ss_pred             cEEEEEEEEEC---CCC-CCCcEEEEeeCCCCCChhhhccCCCceEEECCCCcCCCcEEeccce----eEcccCEEEEEE
Confidence            35566666663   355 8999999998733   22   34444677787664 4477777622    456788999999


Q ss_pred             eccccCCCCceeecEEEEc
Q 033290           79 LSNHLNGRDTHVRQIKIYG   97 (122)
Q Consensus        79 ~~NhqnGrDTHIR~ikI~g   97 (122)
                      ..|+-.+--|+|.-|.++|
T Consensus       141 ~~n~~g~e~T~I~~I~l~G  159 (161)
T 1xoy_A          141 EANQSGSEVTKVQKIALYG  159 (161)
T ss_dssp             EEETTCCSCCEESEEEEEE
T ss_pred             ecCCCCCccEEEEEEEEEe
Confidence            9997444569999999998

>4a41_A GH89_CBM32-5, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: GAL; 1.55A {Clostridium perfringens} PDB: 4a44_A* 4a45_A* 4aax_A*

Probab=94.32  E-value=0.79  Score=32.38  Aligned_cols=81  Identities=7%  Similarity=0.119  Sum_probs=57.8

Q ss_pred             eeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCCC
Q 033290            7 FVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGR   86 (122)
Q Consensus         7 v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnGr   86 (122)
                      ..|..|.+.-. .......|....|.+.++-.+..++...++....++..+.+.       +.++.||+|.++++.. | 
T Consensus        81 ~~I~~v~~~~r-~~~~~~~~~~y~I~~S~DG~~W~~v~~g~~~~~~~~~~~~f~-------~v~aRYVRi~~~~~~~-~-  150 (161)
T 4a41_A           81 YEINKFTYLPR-SGAKNGNITKYELHVSEDGNNFRKISEGNWDDSGSLKTLKFN-------STKATHVKLVALEGVG-G-  150 (161)
T ss_dssp             EEEEEEEEECC-SSCCTTCEEEEEEEEESSSSCEEEEEEEECCSSSSCEEEEEE-------EEEEEEEEEEEEEEGG-G-
T ss_pred             EEEeEEEEEec-CCCCCCcEEEEEEEEECCCCceEEeeeeeecCCCcEEEEEeC-------CceEEEEEEEEEEccC-C-
Confidence            35666654332 222457899999999888888888877666655567777776       5899999999998753 2 


Q ss_pred             CceeecEEEEc
Q 033290           87 DTHVRQIKIYG   97 (122)
Q Consensus        87 DTHIR~ikI~g   97 (122)
                      =.-|.-|+||+
T Consensus       151 ~~si~E~~Vya  161 (161)
T 4a41_A          151 FASAAELNVFA  161 (161)
T ss_dssp             CCEESEEEEEC
T ss_pred             eEEeEeEEEEC
Confidence            35777788774

>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*

Probab=93.52  E-value=1.3  Score=36.75  Aligned_cols=84  Identities=7%  Similarity=0.050  Sum_probs=61.0

Q ss_pred             eeeeeeeeeeecCCC-CCCCcceEEEEeCCCcCCceE-eeEEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccC
Q 033290            7 FVLKLVVLYVDFKLD-ESYTPSKISVRAGDGFHNLKE-IKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLN   84 (122)
Q Consensus         7 v~I~~i~ly~d~~~D-ESYTP~~I~I~~G~~~~dL~e-v~~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~Nhqn   84 (122)
                      ..|..|.+.-.  .| ....|+...|.+.++-.+..+ +..-++....++..+.+.       +.++.||+|.+.+++.+
T Consensus       516 ~~i~~v~~~~r--~~~~~~~~~~y~i~~S~Dg~~w~~~v~~~~~~~~~~~~~~~f~-------~~~aRyvRi~~~~~~~~  586 (601)
T 1w8o_A          516 HTISGLQYTRR--QNSANEQVADYEIYTSLNGTTWDGPVASGRFTTSLAPQRAVFP-------ARDARYIRLVALSEQTG  586 (601)
T ss_dssp             EEEEEEEEEEC--SSCSTTCBCEEEEEEESSSSSCEEEEEEEECCSCSSCEEEEEE-------EEEEEEEEEEECCBTTS
T ss_pred             EEEeEEEEecC--CCCCCCceEEEEEEEECCCCccceeeeeEEEcCCCceEEEEeC-------CcceEEEEEEEEEcCCC
Confidence            45666666422  23 356889999999888878876 665555443456666665       58999999999998765


Q ss_pred             CCCceeecEEEEccC
Q 033290           85 GRDTHVRQIKIYGPR   99 (122)
Q Consensus        85 GrDTHIR~ikI~gp~   99 (122)
                      +.=-.|.-|+|||.|
T Consensus       587 ~~~~~i~Ei~v~g~~  601 (601)
T 1w8o_A          587 HKYAAVAELEVEGQR  601 (601)
T ss_dssp             CSCCEEEEEEEEECC
T ss_pred             CceEEEEEEEEEecC
Confidence            556899999999975

>2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module, sugar-binding protein, pectin, plant cell WALL, galacturonic acid; 1.35A {Yersinia enterocolitica} PDB: 2jd9_A

Probab=92.54  E-value=1.6  Score=29.27  Aligned_cols=84  Identities=8%  Similarity=0.027  Sum_probs=55.8

Q ss_pred             eeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEEEE--ecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccC
Q 033290            7 FVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVEL--VKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLN   84 (122)
Q Consensus         7 v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v~l--~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~Nhqn   84 (122)
                      ..|..|.+...   +....|....|.+-++-.++..+.....  ....++..+.+.       +..+.||+|.+..+..+
T Consensus        54 ~~v~~v~i~~~---~~~~~~~~~~i~~S~Dg~~w~~~~~~~~~~~~~~~~~~~~f~-------~~~aryvRi~~~~~~~~  123 (145)
T 2jda_A           54 QSIENILIVPF---KPTERKLKFSIFYSNDGKNWQPLAEGLETSSADKNGEKLTFT-------PVTAKYIKLDTFGTDVN  123 (145)
T ss_dssp             EEEEEEEEEES---STTTCCEEEEEEEESSSSSCEEEEEEEECCCSCSSCEEEEEE-------EEEEEEEEEEEEEESSS
T ss_pred             eEEEEEEEEec---cCCCceEEEEEEEeCCCCceEEeeeCccccCCCCccEEEEeC-------cccEEEEEEEEECCCCC
Confidence            45666666544   2234678888887666566666665443  122345566554       68999999999987653


Q ss_pred             CCCceeecEEEEccCCC
Q 033290           85 GRDTHVRQIKIYGPRPN  101 (122)
Q Consensus        85 GrDTHIR~ikI~gp~~~  101 (122)
                       .-..|..|+|||....
T Consensus       124 -~~~~i~Ei~v~g~~~~  139 (145)
T 2jda_A          124 -NWSAINEIAINSAAAL  139 (145)
T ss_dssp             -SEEEEEEEEESCCCSS
T ss_pred             -cEeEEEEEEEECCCCC
Confidence             3478999999998653

>4dxt_A SUN domain-containing protein 2; beta-sandwich, LINC complex, structural protein; 2.22A {Homo sapiens} PDB: 3unp_A 4dxr_A* 4dxs_A* 4fi9_A

Probab=91.01  E-value=1.6  Score=32.85  Aligned_cols=76  Identities=12%  Similarity=0.094  Sum_probs=53.2

Q ss_pred             CCCCCCcceEEEEeCCCcCC--ceEeeEEEEecC-ceeEEEEccCCCCCCCeEEEEEEEEEeeccccCCCCceeecEEEE
Q 033290           20 LDESYTPSKISVRAGDGFHN--LKEIKTVELVKP-TGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIY   96 (122)
Q Consensus        20 ~DESYTP~~I~I~~G~~~~d--L~ev~~v~l~~p-~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnGrDTHIR~ikI~   96 (122)
                      .|=|=.|+.+.|.+=....+  ...+...+.+.. ..-..+.+..  +  .......||+.|++||=|..=|-|..+||+
T Consensus       118 ~~~~SAPKdf~V~g~~~~~~~~~~~Lg~f~Y~~~~~~~QtF~l~~--~--~~~~~~~V~l~i~SN~G~~~~TClYr~RVh  193 (198)
T 4dxt_A          118 STISSAPKDFAIFGFDEDLQQEGTLLGKFTYDQDGEPIQTFHFQA--P--TMATYQVVELRILTNWGHPEYTCIYRFRVH  193 (198)
T ss_dssp             GCCTTSBCEEEEEEESSSSCCCCEEEEEEECCTTSCSEEEEECSS--C--CSCCEEEEEEEECCBSSCSSEEEECEEEEE
T ss_pred             cCcCCCCcEEEEEEEcCCCCCCcEEEEEEEECCCCCcceEEEeCC--C--CCcceeEEEEEEECCCCCCCcEEEEEEEEc
Confidence            46788999999997554432  334455555432 2456666652  1  123466899999999999999999999999


Q ss_pred             ccC
Q 033290           97 GPR   99 (122)
Q Consensus        97 gp~   99 (122)
                      |-+
T Consensus       194 G~~  196 (198)
T 4dxt_A          194 GEP  196 (198)
T ss_dssp             EEC
T ss_pred             CEe
Confidence            964

>1wwy_A Thioredoxin-like protein 1; structural genomics, hypothetical protein, regulatory protei apoptosis, cancer; NMR {Homo sapiens}

Probab=91.00  E-value=0.55  Score=34.94  Aligned_cols=88  Identities=17%  Similarity=0.132  Sum_probs=60.6

Q ss_pred             eeeeeeeeeeecCCCCCCCcceEEEEeCC-C---cC---CceEeeEEEEecCc--eeEEEEccCCCCCCCeEEEEEEEEE
Q 033290            7 FVLKLVVLYVDFKLDESYTPSKISVRAGD-G---FH---NLKEIKTVELVKPT--GWVYISLSGNDPRDTFVNTFMLQIV   77 (122)
Q Consensus         7 v~I~~i~ly~d~~~DESYTP~~I~I~~G~-~---~~---dL~ev~~v~l~~p~--GWv~i~l~~~~~~~~~l~~~~iQI~   77 (122)
                      |.|++|.|.-   .++-..|++|++++-. .   |.   |+.-..+++|.+..  +|..++++-.    +...+.-|+|-
T Consensus        61 VKl~Si~i~~---~~~~~~Pk~iKlf~N~~~~ldFd~a~~~~p~Q~~eL~~~~~~~g~~~~Lr~v----kFqnV~sLtlf  133 (171)
T 1wwy_A           61 VKLYSMKFQG---PDNGQGPKYVKIFINLPRSMDFEEAERSEPTQALELTEDDIKEDGIVPLRYV----KFQNVNSVTIF  133 (171)
T ss_dssp             EEEEEEEECC---CSSSCCBCEEEEEESCSSCCCTTHHHHSCCSSCEECCTTTSSTTCCEECCTT----TCTTEEEEEEE
T ss_pred             EEEEEEEEEC---CCCCCCCcEEEEeecCCCCcChhhhccCCCceEEEcCCcccCCCcEEEccce----EEcccCEEEEE
Confidence            5566666653   3455699999999975 2   22   23333567777542  4667777622    45677889999


Q ss_pred             eeccccCCCCceeecEEEEccCCC
Q 033290           78 VLSNHLNGRDTHVRQIKIYGPRPN  101 (122)
Q Consensus        78 I~~NhqnGrDTHIR~ikI~gp~~~  101 (122)
                      |..|+-++--|+|.-|.++|-...
T Consensus       134 ~~~n~~g~e~T~I~~I~l~Ge~~~  157 (171)
T 1wwy_A          134 VQSNQGEEETTRISYFTFIGTPVQ  157 (171)
T ss_dssp             ECCBTTCCSSCCBCCEEEEEEESS
T ss_pred             EecCCCCCccEEEEEEEEEeEecC
Confidence            999995556799999999995543

>2v72_A CBM32, EXO-alpha-sialidase; galactose, bacterial pathogen, carbohydrate-binding module, sugar-binding protein; HET: GAL; 2.25A {Clostridium perfringens}

Probab=88.41  E-value=3.9  Score=27.00  Aligned_cols=79  Identities=5%  Similarity=-0.001  Sum_probs=49.5

Q ss_pred             eeeeeeeeeeecCCC-CCCCcceEEEEeCCCcCCceEeeEEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCC
Q 033290            7 FVLKLVVLYVDFKLD-ESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNG   85 (122)
Q Consensus         7 v~I~~i~ly~d~~~D-ESYTP~~I~I~~G~~~~dL~ev~~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnG   85 (122)
                      ..|..|.+.-.  .| ....|+...|.+.++-.+ ..+..-+.....+...+.+.      .++.+.||+|.+++.+.  
T Consensus        63 ~~i~~v~~~~~--~~~~~~~~~~~~i~~S~Dg~~-~~v~~g~~~~~~~~~~~~f~------~p~~aRyvRi~~~~~~~--  131 (143)
T 2v72_A           63 RKVSSIAITPR--TSGNNGFITKYEIHAINNGVE-TLVAEGTWEENNLVKTVTFD------SPIDAEEIKITAIQGVG--  131 (143)
T ss_dssp             EEEEEEEEECC--SSCCTTCEEEEEEEEEETTEE-EEEEEEECCSSSSCEEEEEE------EEEEEEEEEEEEEEEGG--
T ss_pred             eEEeEEEEEec--ccCCCCCEEEEEEEEEcCCCc-cEEeEEEEcCCCceEEEEeC------CCCcEEEEEEEEEEcCC--
Confidence            45566666543  23 244578888887655444 44433333332456667666      46899999999998875  


Q ss_pred             CCceeecEEEE
Q 033290           86 RDTHVRQIKIY   96 (122)
Q Consensus        86 rDTHIR~ikI~   96 (122)
                      .-..|.-|+||
T Consensus       132 ~~~~i~Ei~v~  142 (143)
T 2v72_A          132 GFASIAELNVY  142 (143)
T ss_dssp             GCCEESEEEEE
T ss_pred             CeEEEEEEEEE
Confidence            33677777776

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=82.82  E-value=15  Score=30.77  Aligned_cols=87  Identities=7%  Similarity=0.010  Sum_probs=60.2

Q ss_pred             eeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCc-eEeeEEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCC
Q 033290            7 FVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNL-KEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNG   85 (122)
Q Consensus         7 v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL-~ev~~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnG   85 (122)
                      ..|..+.+.-....+....|+...|.+-++-.+. +.+..-+.....++..+.+.       +.++.||+|.++++..+.
T Consensus        80 ~~i~~v~~~~~~~~~~~~~~~~y~i~~S~Dg~~w~~~v~~~~~~~~~~~~~~~~~-------~~~aRyvRi~~~~~~~~~  152 (656)
T 1k3i_A           80 QNVNGLSMLPRQDGNQNGWIGRHEVYLSSDGTNWGSPVASGSWFADSTTKYSNFE-------TRPARYVRLVAITEANGQ  152 (656)
T ss_dssp             EEEEEEEEECCCSSCCTTCBCEEEEEEESSSSCCCSCSEEEECCSSSSCEEEEEE-------EEEEEEEEEEECSBTTSC
T ss_pred             EEEEEEEEEecccCCCCCCeeEEEEEEECCCCCcceeeeeeeecCCCcceeeecC-------CcceEEEEEEEecccccC
Confidence            4455555543321122346889999987777777 66666666655556666665       589999999999987654


Q ss_pred             CCceeecEEEEccCC
Q 033290           86 RDTHVRQIKIYGPRP  100 (122)
Q Consensus        86 rDTHIR~ikI~gp~~  100 (122)
                      +=..|.-+.||+...
T Consensus       153 ~~~si~E~~v~~~~~  167 (656)
T 1k3i_A          153 PWTSIAEINVFQASS  167 (656)
T ss_dssp             SCCEESEEEEEECSC
T ss_pred             CceeEEEEEEeeccc
Confidence            447899999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	122
d1gqpa_	194	b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-p	1e-32
d1jhja_	161	b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-p	8e-31

>d1gqpa_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: APC10-like
domain: APC10/DOC1 subunit of the anaphase-promoting complex
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  111 bits (278), Expect = 1e-32
 Identities = 27/90 (30%), Positives = 47/90 (52%)

Query: 9   LKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTF 68
           + ++ ++     DESY PS + V AG    + +  K +E+    GWV +    N   D  
Sbjct: 104 ICVMAIFFSMIADESYAPSLVKVYAGHSPSDARFYKMLEVRNVNGWVALRFLDNREDDQL 163

Query: 69  VNTFMLQIVVLSNHLNGRDTHVRQIKIYGP 98
           +    ++++   NH NG+DTH+R I++Y P
Sbjct: 164 LKCQFIRLLFPVNHENGKDTHLRGIRLYVP 193

>d1jhja_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: APC10-like
domain: APC10/DOC1 subunit of the anaphase-promoting complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (263), Expect = 8e-31
 Identities = 53/90 (58%), Positives = 69/90 (76%), Gaps = 2/90 (2%)

Query: 9   LKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTF 68
           +K + +Y D+K DESYTPSKISVR G+ FHNL+EI+ +ELV+P+GW+++ L   D     
Sbjct: 73  VKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPL--TDNHKKP 130

Query: 69  VNTFMLQIVVLSNHLNGRDTHVRQIKIYGP 98
             TFM+QI VL+NH NGRDTH+RQIKIY P
Sbjct: 131 TRTFMIQIAVLANHQNGRDTHMRQIKIYTP 160

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	122
d1gqpa_	194	APC10/DOC1 subunit of the anaphase-promoting compl	99.96
d1jhja_	161	APC10/DOC1 subunit of the anaphase-promoting compl	99.9
d1w8oa2	142	Sialidase, C-terminal domain {Micromonospora virid	96.98
d1k3ia2	162	Galactose oxidase, N-terminal domain {Fungi (Fusar	95.89
d1xoya_	161	Hypothetical protein AT3g04780/F7O18_27 {Thale cre	93.01
d1tvga_	136	Placental protein 25, pp25 {Human (Homo sapiens) [	92.77

>d1gqpa_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: APC10-like
domain: APC10/DOC1 subunit of the anaphase-promoting complex
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2e-30  Score=197.20  Aligned_cols=94  Identities=29%  Similarity=0.538  Sum_probs=83.5

Q ss_pred             EeeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCC
Q 033290            6 VFVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNG   85 (122)
Q Consensus         6 ~v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnG   85 (122)
                      .+.|+.|.||++++.|+||+|+++.|++|++.+|+++++++++++|.||+.+++.+....++|++|+||||.|++|||||
T Consensus       101 ~~~i~~i~i~~~~~~d~sy~p~~~~i~~s~d~~~w~~v~t~~~~~~~Gwv~i~l~~~~~~~~pv~aryIri~i~~nhqnG  180 (194)
T d1gqpa_         101 RMDICVMAIFFSMIADESYAPSLVKVYAGHSPSDARFYKMLEVRNVNGWVALRFLDNREDDQLLKCQFIRLLFPVNHENG  180 (194)
T ss_dssp             EEEECEEEEEEEHHHHGGGSEEEEEEEEESSTTTCEEEEEEEEEECEEEEEECCC--------EEEEEEEEEEEEESTTC
T ss_pred             CcEEEEEEEEecccccccCCceEEEEEEeCCcCCceEEEEEEecCCCceEEEEcccCcccCCeEEEEEEEEEEEecccCC
Confidence            46899999999999999999999999999999999999999999999999999987666678999999999999999999


Q ss_pred             CCceeecEEEEccC
Q 033290           86 RDTHVRQIKIYGPR   99 (122)
Q Consensus        86 rDTHIR~ikI~gp~   99 (122)
                      |||||||||||||.
T Consensus       181 kDt~IR~irv~Gp~  194 (194)
T d1gqpa_         181 KDTHLRGIRLYVPS  194 (194)
T ss_dssp             SSCEESCEEEEEEC
T ss_pred             cccEEEeeEEeCCC
Confidence            99999999999994

>d1jhja_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting complex {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: APC10-like
domain: APC10/DOC1 subunit of the anaphase-promoting complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.1e-24  Score=155.49  Aligned_cols=92  Identities=58%  Similarity=0.975  Sum_probs=86.3

Q ss_pred             EeeeeeeeeeeecCCCCCCCcceEEEEeCCCcCCceEeeEEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccCC
Q 033290            6 VFVLKLVVLYVDFKLDESYTPSKISVRAGDGFHNLKEIKTVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNG   85 (122)
Q Consensus         6 ~v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~dL~ev~~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnG   85 (122)
                      .+.|..|+||+++..|+||+|+++.|++|++..++.++.+.+++.+.||+.+++.  +...++++++||||.|++||+||
T Consensus        70 ~~~i~~i~i~~~~~~d~s~~p~~~~i~~s~d~~~w~~v~~~~~~~~~g~~~~~~~--~~~~~~~~~ryiri~i~~n~~~G  147 (161)
T d1jhja_          70 KTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVPLT--DNHKKPTRTFMIQIAVLANHQNG  147 (161)
T ss_dssp             EEEECEEEEEEEHHHHGGGSEEEEEEEEESSTTSCEEEEEEECSSCEEEEEEECB--CTTSSBEEEEEEEEEEEEEGGGC
T ss_pred             CeEEEEEEEEecCCCCcCCCcEEEEEEEcCCcCCceeEEEEEecCCCCceEEEee--ccCCCcEEEEEEEEEEeecccCC
Confidence            4679999999999999999999999999999999999999999999999999987  44557899999999999999999


Q ss_pred             CCceeecEEEEccC
Q 033290           86 RDTHVRQIKIYGPR   99 (122)
Q Consensus        86 rDTHIR~ikI~gp~   99 (122)
                      +||||||||||||.
T Consensus       148 ~D~~Ir~i~V~Gp~  161 (161)
T d1jhja_         148 RDTHMRQIKIYTPV  161 (161)
T ss_dssp             SSCEECEEEEEEEC
T ss_pred             cccEEEEEEEEeCC
Confidence            99999999999984

>d1w8oa2 b.18.1.1 (A:506-647) Sialidase, C-terminal domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Galactose-binding domain
domain: Sialidase, C-terminal domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=96.98  E-value=0.011  Score=38.43  Aligned_cols=84  Identities=7%  Similarity=0.029  Sum_probs=61.2

Q ss_pred             eeeeeeeeeeecCCCCCC-CcceEEEEeCCCcCCceEee-EEEEecCceeEEEEccCCCCCCCeEEEEEEEEEeeccccC
Q 033290            7 FVLKLVVLYVDFKLDESY-TPSKISVRAGDGFHNLKEIK-TVELVKPTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLN   84 (122)
Q Consensus         7 v~I~~i~ly~d~~~DESY-TP~~I~I~~G~~~~dL~ev~-~v~l~~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~Nhqn   84 (122)
                      ..|..+.++.-  .|..- .|....|.+.+...++.++. ..+.....++..+.+.       +.++.+|+|.++.++.+
T Consensus        57 ~~v~~i~i~~~--~~~~~~~~~~~~i~~S~dg~~w~~~~~~~~~~~~~~~~~~~~~-------~~~aryvRl~~~~~~~~  127 (142)
T d1w8oa2          57 HTISGLQYTRR--QNSANEQVADYEIYTSLNGTTWDGPVASGRFTTSLAPQRAVFP-------ARDARYIRLVALSEQTG  127 (142)
T ss_dssp             EEEEEEEEEEC--SSCSTTCBCEEEEEEESSSSSCEEEEEEEECCSCSSCEEEEEE-------EEEEEEEEEEECCBTTS
T ss_pred             EEeeEEEEECc--cccCcCCceeEEEEEecCCCceEEEEEeeecCCCCceEEEecC-------ceEEEEEEEEEEecCCC
Confidence            34666666532  23222 38999999988777776543 3344556677777766       68999999999999877


Q ss_pred             CCCceeecEEEEccC
Q 033290           85 GRDTHVRQIKIYGPR   99 (122)
Q Consensus        85 GrDTHIR~ikI~gp~   99 (122)
                      +.=..|.-|+|||++
T Consensus       128 ~~~~~i~Ei~v~G~~  142 (142)
T d1w8oa2         128 HKYAAVAELEVEGQR  142 (142)
T ss_dssp             CSCCEEEEEEEEECC
T ss_pred             CceEEEEEEEEEEEC
Confidence            777899999999975

>d1xoya_ b.18.1.26 (A:) Hypothetical protein AT3g04780/F7O18_27 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Hypothetical protein AT3g04780/F7O18 27
domain: Hypothetical protein AT3g04780/F7O18 27
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.01  E-value=0.083  Score=37.26  Aligned_cols=83  Identities=20%  Similarity=0.233  Sum_probs=55.7

Q ss_pred             eeeeeeeeeeecCCCCCCCcceEEEEeCCCcC------CceEeeEEEEe-cCceeEEEEccCCCCCCCeEEEEEEEEEee
Q 033290            7 FVLKLVVLYVDFKLDESYTPSKISVRAGDGFH------NLKEIKTVELV-KPTGWVYISLSGNDPRDTFVNTFMLQIVVL   79 (122)
Q Consensus         7 v~I~~i~ly~d~~~DESYTP~~I~I~~G~~~~------dL~ev~~v~l~-~p~GWv~i~l~~~~~~~~~l~~~~iQI~I~   79 (122)
                      |.|++|.|- .  .|+ ..|++|++++-...-      ++.-..++++. +..||+.++|+-.    +...+.-|+|-|.
T Consensus        70 Vkl~si~i~-~--~~~-~~Pk~iklf~N~~~idF~~a~~~~p~q~iel~~~~~~~~~~~L~~~----kFqnV~sLtif~~  141 (161)
T d1xoya_          70 IKLHSFAIK-G--PEE-EGPKTVKFFSNKEHMCFSNVNDFPPSDTAELTEENLKGKPVVLKYV----KFQNVRSLTIFIE  141 (161)
T ss_dssp             ECEEEEEEE-C--CTT-TSEEEEEEEESCSCCCHHHHTTSCCSEEECCCTTGGGTCCEECCTT----TCSCEEEEEEEEE
T ss_pred             eEEEEEEEe-C--CCC-CCCcEEEEEeCCCcCCcchhhhCCccceEEeCCccCCceEEeecce----eeccccEEEEEEe
Confidence            455666553 1  233 479999999974322      22333366665 4457777776622    5678889999999


Q ss_pred             ccccCCCCceeecEEEEc
Q 033290           80 SNHLNGRDTHVRQIKIYG   97 (122)
Q Consensus        80 ~NhqnGrDTHIR~ikI~g   97 (122)
                      .|+-++-=|+|.-|.+.|
T Consensus       142 ~N~~g~e~T~I~~I~l~G  159 (161)
T d1xoya_         142 ANQSGSEVTKVQKIALYG  159 (161)
T ss_dssp             EETTCCSCCEESEEEEEE
T ss_pred             CCCCCCceEEEEEEEEEe
Confidence            996554559999999988

>d1tvga_ b.18.1.9 (A:) Placental protein 25, pp25 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: APC10-like
domain: Placental protein 25, pp25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.77  E-value=0.43  Score=31.02  Aligned_cols=66  Identities=12%  Similarity=0.093  Sum_probs=43.7

Q ss_pred             cceEEEEeCCCcCCceEeeEEEEec-CceeEEEEccCCCCCCCeEEEEEEEEEeeccccCCCCceeecEEEEccC
Q 033290           26 PSKISVRAGDGFHNLKEIKTVELVK-PTGWVYISLSGNDPRDTFVNTFMLQIVVLSNHLNGRDTHVRQIKIYGPR   99 (122)
Q Consensus        26 P~~I~I~~G~~~~dL~ev~~v~l~~-p~GWv~i~l~~~~~~~~~l~~~~iQI~I~~NhqnGrDTHIR~ikI~gp~   99 (122)
                      +.++.|..++...++..+.+.+... +..|..+.+.      .+..+.||+|.|++++.+  =..|..|+|+|..
T Consensus        68 ~~~~~i~~s~Dg~~w~~v~~~~~~~~~~~~~~~~~~------~~~~aryvR~~i~s~~g~--~~~i~ev~v~G~~  134 (136)
T d1tvga_          68 TLKIEKSTSKEPVDFEQWIEKDLVHTEGQLQNEEIV------AHGSATYLRFIIVSAFDH--FASVHSVSAEGTV  134 (136)
T ss_dssp             EEEEEEECSSSSCCCEEEEEEECCCCTTCCEEEEEC------CCEEEEEEEEEEEEESSS--CCEEEEEEEEEEE
T ss_pred             eeEEEEEEccCCceeEEEEEecccCCCCcceEEecC------CccEEEEEEEEEEeccCC--cEEEEEEEEEeEE
Confidence            3456666666666666666665542 3334444333      468899999999998654  4579999999853