Citrus Sinensis ID: 033298

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
MAARVALYSSLSGKASTWPSSWSHNPFTQQYSLSSPPKPRAHGQFKVYANLGGRDGEVKPKGKRKFVTREEEPDEFWQTAGEREGENPMKTPIPYIIIFGMSTPFVILAIAFANGWIKMPVR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccEEEcccc
Secondary Structure Prediction (SSPRO)
cccEEEEcccccccccccccccccccccEEEEcccccccccccEEEEEEEEccccccccccccccEEEcccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccEEcccc
Coil and Loop (DISEMBL)
MAARVALYSSlsgkastwpsswshnpftqqyslssppkprahgqfkvyanlggrdgevkpkgkrkfvtreeepdefwqtageregenpmktpipyiiIFGMSTPFVILAIAFANgwikmpvr
Flexible Loop (DISEMBL)
MAARVALYSSLSGKASTWPSSWSHNPFTQQYSLSSPPKPRAHGQFKVYanlggrdgevkpkgkrkfvtreeepdefwqtageregenpmKTPIPYIIIFGMSTPFVILAIAFAngwikmpvr
Low Complexity Region (SEG)
MAARVALYSSLSGKASTWPSSWSHNPFTQQYSLSSPPKPRAHGQFKVYANLGGRDGEVKPKGKRKFVTREEEPDEFWQTAGEREGENPMKTPIPYIIIFGMSTPFVILAIAFANGWIKMPVR
Disordered region (IsUnstruct)
*******************************************************************************************PIPYIIIFGMSTPFVILAIAFANGWIK****
Disordered Region (DISOPRED)
*********SLS*******************************************************************************PIPYIIIFGMSTPFVILAIAFANGWIKMPVR
Disordered Region (DISEMBL)
*******************SSWSHNPFTQQYSLSSPPKPRAHGQFKVYANLGGRDGEVKPKGKRKFVTREEEPDEFWQTAGEREGENPMKTPIPYIIIFGMSTPFVILAIAFANGWIKMPVR
Disordered Region (DISPRO)
*********SLSGKASTWPSSWSHNPFTQQYSLSSPPKPRAHGQFKVYANLGGRDGEVKP*G*RKFVTREEEPDEFWQTAGEREGENPMKTPIPYIIIFGMSTPFVILAIAFANGWIKMPVR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAARVALYSSLSGKASTWPSSWSHNPFTQQYSLSSPPKPRAHGQFKVYANLGGRDGEVKPKGKRKFVTREEEPDEFWQTAGEREGENPMKTPIPYIIIFGMSTPFVILAIAFANGWIKMPVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
224129182	118	predicted protein [Populus trichocarpa]	0.950	0.983	0.685	9e-38
255578705	117	conserved hypothetical protein [Ricinus	0.959	1.0	0.631	6e-35
21593859	125	unknown [Arabidopsis thaliana]	0.721	0.704	0.761	6e-35
225447539	118	PREDICTED: uncharacterized protein LOC10	0.967	1.0	0.631	7e-35
388514561	119	unknown [Lotus japonicus]	0.975	1.0	0.631	6e-34
18396025	125	uncharacterized protein [Arabidopsis tha	0.721	0.704	0.738	1e-33
356501745	115	PREDICTED: uncharacterized protein LOC10	0.942	1.0	0.647	3e-33
15236299	125	uncharacterized protein [Arabidopsis tha	0.721	0.704	0.738	4e-33
27754732	119	unknown protein [Arabidopsis thaliana]	0.721	0.739	0.738	4e-33
297835826	125	hypothetical protein ARALYDRAFT_480141 [	0.721	0.704	0.738	6e-33

>gi|224129182|ref|XP_002320521.1| predicted protein [Populus trichocarpa] gi|222861294|gb|EEE98836.1| predicted protein [Populus trichocarpa]

 Score =  160 bits (405), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 85/124 (68%), Positives = 101/124 (81%), Gaps = 8/124 (6%)

Query: 1   MAARVALYSSLSGK--ASTWPSSWSHNPFTQQYSLSSPPKPRAHGQFKVYANLGGRDGEV 58
           MAA+V L SSL+      + PSS+S   FT    LSSP K R H  FK++ANLG  DGE+
Sbjct: 1   MAAKVVLSSSLNTHFPVPSKPSSFSSVVFT----LSSPKK-RVH-HFKIHANLGEGDGEL 54

Query: 59  KPKGKRKFVTREEEPDEFWQTAGEREGENPMKTPIPYIIIFGMSTPFVILAIAFANGWIK 118
           KPKGK+KF+TRE+EP+++WQ+AGEREGENPMKTP+PYIIIFGMSTPFVILAIAFANGWIK
Sbjct: 55  KPKGKKKFITREQEPEQYWQSAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWIK 114

Query: 119 MPVR 122
           +PVR
Sbjct: 115 VPVR 118

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578705|ref|XP_002530211.1| conserved hypothetical protein [Ricinus communis] gi|223530258|gb|EEF32158.1| conserved hypothetical protein [Ricinus communis]

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 77/122 (63%), Positives = 96/122 (78%), Gaps = 5/122 (4%)

Query: 1   MAARVALYSSLSGKASTWPSSWSHNPFTQQYSLSSPPKPRAHGQFKVYANLGGRDGEVKP 60
           MAA+ AL SSL  +    P+    +P +  +S    P+ R   +FK+ A +GG DGE+KP
Sbjct: 1   MAAKPALSSSLISQIPVLPNFSPSSPLSCTFST---PRKRVQ-KFKINA-IGGGDGELKP 55

Query: 61  KGKRKFVTREEEPDEFWQTAGEREGENPMKTPIPYIIIFGMSTPFVILAIAFANGWIKMP 120
           KGK+KF+TRE+EP+++WQTAGEREGENPMKTP+PYIIIFGMSTPFVILAIAFANGWIK+P
Sbjct: 56  KGKKKFITREQEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWIKVP 115

Query: 121 VR 122
           VR
Sbjct: 116 VR 117

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593859|gb|AAM65826.1| unknown [Arabidopsis thaliana]

 Score =  150 bits (380), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 67/88 (76%), Positives = 79/88 (89%)

Query: 35  SPPKPRAHGQFKVYANLGGRDGEVKPKGKRKFVTREEEPDEFWQTAGEREGENPMKTPIP 94
            PP P    QFK++A LGGRDGEVKPK K+KF+T+EEEP+++WQ+ GEREGENPMKTP+P
Sbjct: 38  CPPSPLGFPQFKLHAKLGGRDGEVKPKDKKKFITKEEEPEQYWQSVGEREGENPMKTPLP 97

Query: 95  YIIIFGMSTPFVILAIAFANGWIKMPVR 122
           YIIIFGMSTPFVILAIAFANGWIK+P+R
Sbjct: 98  YIIIFGMSTPFVILAIAFANGWIKVPIR 125

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447539|ref|XP_002268250.1| PREDICTED: uncharacterized protein LOC100264834 [Vitis vinifera] gi|296085028|emb|CBI28443.3| unnamed protein product [Vitis vinifera]

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 77/122 (63%), Positives = 92/122 (75%), Gaps = 4/122 (3%)

Query: 1   MAARVALYSSLSGKASTWPSSWSHNPFTQQYSLSSPPKPRAHGQFKVYANLGGRDGEVKP 60
           MAA+VAL S    +      S S +  T      + PK RAH  F ++A LGG DGE+K 
Sbjct: 1   MAAKVALSSCFCTRLPLPSKSSSPSSLTHT---PTSPKKRAH-HFSIHAKLGGGDGEIKQ 56

Query: 61  KGKRKFVTREEEPDEFWQTAGEREGENPMKTPIPYIIIFGMSTPFVILAIAFANGWIKMP 120
            GK+KF+TREEEP+++WQTAGEREGENPMKTP+PYIIIFGMSTPFVILAIAFANGW+K+P
Sbjct: 57  GGKKKFITREEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKVP 116

Query: 121 VR 122
           VR
Sbjct: 117 VR 118

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514561|gb|AFK45342.1| unknown [Lotus japonicus]

 Score =  147 bits (372), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 77/122 (63%), Positives = 92/122 (75%), Gaps = 3/122 (2%)

Query: 1   MAARVALYSSLSGKASTWPSSWSHNPFTQQYSLSSPPKPRAHGQFKVYANLGGRDGEVKP 60
           MA RV L S L+ K S  P S S +P +  +SL SP K  A    +V+A +GG D + K 
Sbjct: 1   MATRVTLSSPLAFKTSLLPKSPSLSPVS--FSLGSP-KTNAVVGVRVHAKIGGSDEDTKK 57

Query: 61  KGKRKFVTREEEPDEFWQTAGEREGENPMKTPIPYIIIFGMSTPFVILAIAFANGWIKMP 120
             K+KF+TR+EEP ++WQTAGEREGENPMKTP+PYIIIFGMSTPFVILAIAFANGWIK+P
Sbjct: 58  GEKKKFITRDEEPQQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWIKVP 117

Query: 121 VR 122
           VR
Sbjct: 118 VR 119

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396025|ref|NP_565324.1| uncharacterized protein [Arabidopsis thaliana] gi|4755200|gb|AAD29067.1| expressed protein [Arabidopsis thaliana] gi|330250821|gb|AEC05915.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 65/88 (73%), Positives = 78/88 (88%)

Query: 35  SPPKPRAHGQFKVYANLGGRDGEVKPKGKRKFVTREEEPDEFWQTAGEREGENPMKTPIP 94
            PP P    QFK++A LGG DGEVKPK K+KF+T++EEP+++WQ+ GEREGENPMKTP+P
Sbjct: 38  CPPSPLGFPQFKLHAKLGGGDGEVKPKDKKKFITKDEEPEQYWQSVGEREGENPMKTPLP 97

Query: 95  YIIIFGMSTPFVILAIAFANGWIKMPVR 122
           YIIIFGMSTPFVILAIAFANGWIK+P+R
Sbjct: 98  YIIIFGMSTPFVILAIAFANGWIKVPIR 125

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501745|ref|XP_003519684.1| PREDICTED: uncharacterized protein LOC100805720 [Glycine max]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/122 (64%), Positives = 91/122 (74%), Gaps = 7/122 (5%)

Query: 1   MAARVALYSSLSGKASTWPSSWSHNPFTQQYSLSSPPKPRAHGQFKVYANLGGRDGEVKP 60
           MAA++ L S LS K S  P S S +P      L SP +    G  KV+A LGG D + K 
Sbjct: 1   MAAKLTLSSPLSFKTSFLPKSPSFSP-----GLCSP-RTNVTG-VKVHAKLGGGDEQAKN 53

Query: 61  KGKRKFVTREEEPDEFWQTAGEREGENPMKTPIPYIIIFGMSTPFVILAIAFANGWIKMP 120
            GK+KF+TREEEP ++WQTAGEREGENPMKTP+PYIIIFGMSTPFVILAIAFANGWIK+P
Sbjct: 54  GGKKKFITREEEPQQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWIKVP 113

Query: 121 VR 122
           VR
Sbjct: 114 VR 115

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236299|ref|NP_193086.1| uncharacterized protein [Arabidopsis thaliana] gi|4678376|emb|CAB41108.1| putative protein [Arabidopsis thaliana] gi|7268053|emb|CAB78392.1| putative protein [Arabidopsis thaliana] gi|109946535|gb|ABG48446.1| At4g13500 [Arabidopsis thaliana] gi|332657886|gb|AEE83286.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 65/88 (73%), Positives = 78/88 (88%)

Query: 35  SPPKPRAHGQFKVYANLGGRDGEVKPKGKRKFVTREEEPDEFWQTAGEREGENPMKTPIP 94
            PP P    +FK++A LGG DGEVKPK K+KF+T+EEEP+++WQ+ GEREGENPMKTP+P
Sbjct: 38  CPPSPLGFPEFKLHAKLGGGDGEVKPKDKKKFITKEEEPEQYWQSVGEREGENPMKTPLP 97

Query: 95  YIIIFGMSTPFVILAIAFANGWIKMPVR 122
           YIIIFGMSTPFVILAIAFANGWIK+P+R
Sbjct: 98  YIIIFGMSTPFVILAIAFANGWIKVPIR 125

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27754732|gb|AAO22809.1| unknown protein [Arabidopsis thaliana]

 Score =  144 bits (364), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 65/88 (73%), Positives = 78/88 (88%)

Query: 35  SPPKPRAHGQFKVYANLGGRDGEVKPKGKRKFVTREEEPDEFWQTAGEREGENPMKTPIP 94
            PP P    +FK++A LGG DGEVKPK K+KF+T+EEEP+++WQ+ GEREGENPMKTP+P
Sbjct: 32  CPPSPLGFPEFKLHAKLGGGDGEVKPKDKKKFITKEEEPEQYWQSVGEREGENPMKTPLP 91

Query: 95  YIIIFGMSTPFVILAIAFANGWIKMPVR 122
           YIIIFGMSTPFVILAIAFANGWIK+P+R
Sbjct: 92  YIIIFGMSTPFVILAIAFANGWIKVPIR 119

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835826|ref|XP_002885795.1| hypothetical protein ARALYDRAFT_480141 [Arabidopsis lyrata subsp. lyrata] gi|297331635|gb|EFH62054.1| hypothetical protein ARALYDRAFT_480141 [Arabidopsis lyrata subsp. lyrata]

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 65/88 (73%), Positives = 77/88 (87%)

Query: 35  SPPKPRAHGQFKVYANLGGRDGEVKPKGKRKFVTREEEPDEFWQTAGEREGENPMKTPIP 94
            P  P    QFK++A LGG DGEVKPK K+KF+T+EEEP+++WQ+ GEREGENPMKTP+P
Sbjct: 38  CPQSPLRFPQFKLHAKLGGGDGEVKPKDKKKFITKEEEPEQYWQSVGEREGENPMKTPLP 97

Query: 95  YIIIFGMSTPFVILAIAFANGWIKMPVR 122
           YIIIFGMSTPFVILAIAFANGWIK+P+R
Sbjct: 98  YIIIFGMSTPFVILAIAFANGWIKVPIR 125

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
TAIR|locus:2140867	125	AT4G13500 "AT4G13500" [Arabido	1.0	0.976	0.608	4.4e-36
TAIR|locus:2051264	125	AT2G05310 "AT2G05310" [Arabido	1.0	0.976	0.6	9.2e-36

TAIR|locus:2140867 AT4G13500 "AT4G13500" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 76/125 (60%), Positives = 95/125 (76%)

Query:     1 MAARVALYSS-LSGKAS--TWPSSWSHNPFTQQYSLSSPPKPRAHGQFKVYANLGGRDGE 57
             MAA+  + SS  S +AS  +  SS S++          PP P    +FK++A LGG DGE
Sbjct:     1 MAAKFRISSSSFSHRASDSSTSSSSSYSSLLALPQFFCPPSPLGFPEFKLHAKLGGGDGE 60

Query:    58 VKPKGKRKFVTREEEPDEFWQTAGEREGENPMKTPIPYIIIFGMSTPFVILAIAFANGWI 117
             VKPK K+KF+T+EEEP+++WQ+ GEREGENPMKTP+PYIIIFGMSTPFVILAIAFANGWI
Sbjct:    61 VKPKDKKKFITKEEEPEQYWQSVGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWI 120

Query:   118 KMPVR 122
             K+P+R
Sbjct:   121 KVPIR 125

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2051264 AT2G05310 "AT2G05310" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 75/125 (60%), Positives = 94/125 (75%)

Query:     1 MAARVAL-YSSLSGKA--STWPSSWSHNPFTQQYSLSSPPKPRAHGQFKVYANLGGRDGE 57
             MAA++ +  SS S +   S   SS S++          PP P    QFK++A LGG DGE
Sbjct:     1 MAAKLCIPSSSFSHRTNDSITSSSSSYSSLLALPQFFCPPSPLGFPQFKLHAKLGGGDGE 60

Query:    58 VKPKGKRKFVTREEEPDEFWQTAGEREGENPMKTPIPYIIIFGMSTPFVILAIAFANGWI 117
             VKPK K+KF+T++EEP+++WQ+ GEREGENPMKTP+PYIIIFGMSTPFVILAIAFANGWI
Sbjct:    61 VKPKDKKKFITKDEEPEQYWQSVGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWI 120

Query:   118 KMPVR 122
             K+P+R
Sbjct:   121 KVPIR 125


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      122       122   0.00091  102 3  11 22  0.40    31
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  564 (60 KB)
  Total size of DFA:  142 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.66u 0.20s 13.86t   Elapsed:  00:00:00
  Total cpu time:  13.66u 0.20s 13.86t   Elapsed:  00:00:00
  Start:  Fri May 10 22:21:18 2013   End:  Fri May 10 22:21:18 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_XIV3760 hypothetical protein (118 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
PF01010	242	Oxidored_q1_C: NADH-Ubiquinone oxidoreductase (com	87.37

>PF01010 Oxidored_q1_C: NADH-Ubiquinone oxidoreductase (complex I) subunit C-terminus; InterPro: IPR002128 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=87.37  E-value=0.29  Score=39.23  Aligned_cols=23  Identities=35%  Similarity=0.645  Sum_probs=19.0

Q ss_pred             ehhhhHHHHHHH-HhhcCeeeccC
Q 033298           99 FGMSTPFVILAI-AFANGWIKMPV  121 (122)
Q Consensus        99 ~gi~~PFviLAi-A~AnGwIk~pv  121 (122)
                      ..|.+|.||||| ++-.|||++|.
T Consensus        97 ~tMt~PLivLai~TvfiG~IGiPf  120 (242)
T PF01010_consen   97 NTMTFPLIVLAIFTVFIGFIGIPF  120 (242)
T ss_pred             cEEEEehhhHHhhhheeEEeceee
Confidence            458899999998 57789999883

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This domain represents a C-terminal extension of NADH-Ubiquinone/plastoquinone (complex I) chains (see IPR001750 from INTERPRO). Chain 5 is a component of complex I which catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane [].; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport, 0055114 oxidation-reduction process

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	122
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 13/116 (11%), Positives = 33/116 (28%), Gaps = 35/116 (30%)

Query: 21  SWSHNPFTQQYSLSSPPKPRAHGQFKVYANLGGRDGEVKPKGKRKFVTREEEPDEFWQTA 80
            +  +P   +    S         +    +    D +V  K     V+R +   +     
Sbjct: 92  KFLMSPIKTEQRQPSMMTRM----YIEQRDRLYNDNQVFAKY---NVSRLQPYLKL---- 140

Query: 81  GEREGENPMKTPIPYIIIFGM-----STPFVILAI----------AFANG--WIKM 119
             R+    ++ P   ++I G+     +     +A+                 W+ +
Sbjct: 141 --RQALLELR-PAKNVLIDGVLGSGKTW----VALDVCLSYKVQCKMDFKIFWLNL 189

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00