Citrus Sinensis ID: 033306

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccEEccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcHEEccccEEcccEc
Coil and Loop (DISEMBL)
MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKqyiqepptvekcnllskQLFYTRLASIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWfcageivgrgftftgyyv
Flexible Loop (DISEMBL)
MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV
Low Complexity Region (SEG)
MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV
Disordered region (IsUnstruct)
*****************FVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYY*
Disordered Region (DISOPRED)
*****************FVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV
Disordered Region (DISEMBL)
******************VSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV
Disordered Region (DISPRO)
*ASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLASIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
224142863	122	predicted protein [Populus trichocarpa]	1.0	1.0	0.909	4e-60
388493254	122	unknown [Lotus japonicus]	1.0	1.0	0.860	4e-58
255546205	122	hydrogen-transporting ATP synthase, rota	0.991	0.991	0.892	6e-58
224088909	122	predicted protein [Populus trichocarpa]	1.0	1.0	0.885	7e-58
147770309	122	hypothetical protein VITISV_001728 [Viti	1.0	1.0	0.868	3e-57
225461175	122	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.868	4e-57
449446578	122	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.868	8e-57
225429460	122	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.885	9e-57
351722779	122	uncharacterized protein LOC100499783 [Gl	1.0	1.0	0.860	2e-56
255550826	122	hydrogen-transporting ATP synthase, rota	1.0	1.0	0.868	2e-56

>gi|224142863|ref|XP_002324755.1| predicted protein [Populus trichocarpa] gi|118483071|gb|ABK93445.1| unknown [Populus trichocarpa] gi|222866189|gb|EEF03320.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (597), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 111/122 (90%), Positives = 118/122 (96%)

Query: 1   MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLA 60
           MASKL QLQSKACQASKFVS+HG+AYYKQLLEQNKQYIQ+PP+VEKCNLLSKQLFYTRLA
Sbjct: 1   MASKLTQLQSKACQASKFVSKHGSAYYKQLLEQNKQYIQDPPSVEKCNLLSKQLFYTRLA 60

Query: 61  SIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY 120
           SIP R EAF KELDYVK+LWK+RQ+LKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY
Sbjct: 61  SIPVRSEAFWKELDYVKHLWKHRQELKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY 120

Query: 121 YV 122
           YV
Sbjct: 121 YV 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493254|gb|AFK34693.1| unknown [Lotus japonicus]

 Score =  228 bits (581), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 105/122 (86%), Positives = 117/122 (95%)

Query: 1   MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLA 60
           MASKLQQLQSKACQA++F+++HGT+Y+KQLLEQN+ YIQEPPT+EKCNLL+KQLFYTRLA
Sbjct: 1   MASKLQQLQSKACQATQFIAKHGTSYHKQLLEQNRHYIQEPPTIEKCNLLAKQLFYTRLA 60

Query: 61  SIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY 120
           SIP R EAF KELDY KNLWKNRQ+LKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY
Sbjct: 61  SIPGRYEAFWKELDYTKNLWKNRQELKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY 120

Query: 121 YV 122
           +V
Sbjct: 121 FV 122

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546205|ref|XP_002514162.1| hydrogen-transporting ATP synthase, rotational mechanism, putative [Ricinus communis] gi|223546618|gb|EEF48116.1| hydrogen-transporting ATP synthase, rotational mechanism, putative [Ricinus communis]

 Score =  227 bits (579), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 108/121 (89%), Positives = 115/121 (95%)

Query: 1   MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLA 60
           MASKL QLQSKACQAS+FV++HGTAYYKQLLEQNKQYIQ+P TVEKCN LSKQLFYTRLA
Sbjct: 1   MASKLHQLQSKACQASQFVAKHGTAYYKQLLEQNKQYIQQPATVEKCNELSKQLFYTRLA 60

Query: 61  SIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY 120
           SIP R E+F KELDYVKNLWKNRQ+LKVEDAGIAALFGLECFAW+CAGEIVGRGFTFTGY
Sbjct: 61  SIPHRNESFWKELDYVKNLWKNRQELKVEDAGIAALFGLECFAWYCAGEIVGRGFTFTGY 120

Query: 121 Y 121
           Y
Sbjct: 121 Y 121

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088909|ref|XP_002308578.1| predicted protein [Populus trichocarpa] gi|118483915|gb|ABK93847.1| unknown [Populus trichocarpa] gi|222854554|gb|EEE92101.1| predicted protein [Populus trichocarpa]

 Score =  227 bits (578), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 108/122 (88%), Positives = 114/122 (93%)

Query: 1   MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLA 60
           MASKL QLQSKAC ASKFVS+HG AYYKQLLEQNKQYIQ+PPTVEKCNLLSKQL YTRLA
Sbjct: 1   MASKLAQLQSKACHASKFVSKHGGAYYKQLLEQNKQYIQDPPTVEKCNLLSKQLLYTRLA 60

Query: 61  SIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY 120
           SIP R EAF KELDY K+LWK+RQ+LKVEDAGIAALFGLECFAW+CAGEIVGRGFTFTGY
Sbjct: 61  SIPVRYEAFWKELDYAKHLWKHRQELKVEDAGIAALFGLECFAWYCAGEIVGRGFTFTGY 120

Query: 121 YV 122
           YV
Sbjct: 121 YV 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770309|emb|CAN71304.1| hypothetical protein VITISV_001728 [Vitis vinifera]

 Score =  225 bits (573), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 106/122 (86%), Positives = 116/122 (95%)

Query: 1   MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLA 60
           MASKLQQLQSKA QAS+FV +HG AY+KQLLEQNKQY+QEPPTVEKCNLL+KQLFYTRLA
Sbjct: 1   MASKLQQLQSKAAQASQFVXKHGCAYHKQLLEQNKQYVQEPPTVEKCNLLAKQLFYTRLA 60

Query: 61  SIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY 120
           SIP R E+F KELDYVK++WKNRQ+LKVEDAGIAALFGLEC+AWFCAGEIVGRGFTFTGY
Sbjct: 61  SIPGRYESFWKELDYVKHMWKNRQELKVEDAGIAALFGLECYAWFCAGEIVGRGFTFTGY 120

Query: 121 YV 122
           YV
Sbjct: 121 YV 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461175|ref|XP_002283029.1| PREDICTED: uncharacterized protein LOC100247007 isoform 1 [Vitis vinifera] gi|359493934|ref|XP_003634695.1| PREDICTED: uncharacterized protein LOC100247007 isoform 2 [Vitis vinifera] gi|302143185|emb|CBI20480.3| unnamed protein product [Vitis vinifera]

 Score =  224 bits (572), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 106/122 (86%), Positives = 116/122 (95%)

Query: 1   MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLA 60
           MASKLQQLQSKA QAS+FV +HG AY+KQLLEQNKQY+QEPPTVEKCNLL+KQLFYTRLA
Sbjct: 1   MASKLQQLQSKAAQASQFVVKHGCAYHKQLLEQNKQYVQEPPTVEKCNLLAKQLFYTRLA 60

Query: 61  SIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY 120
           SIP R E+F KELDYVK++WKNRQ+LKVEDAGIAALFGLEC+AWFCAGEIVGRGFTFTGY
Sbjct: 61  SIPGRYESFWKELDYVKHMWKNRQELKVEDAGIAALFGLECYAWFCAGEIVGRGFTFTGY 120

Query: 121 YV 122
           YV
Sbjct: 121 YV 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446578|ref|XP_004141048.1| PREDICTED: uncharacterized protein LOC101203477 [Cucumis sativus] gi|449488017|ref|XP_004157915.1| PREDICTED: uncharacterized LOC101203477 [Cucumis sativus]

 Score =  223 bits (569), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 106/122 (86%), Positives = 114/122 (93%)

Query: 1   MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLA 60
           MASKL QLQSKACQA++F  +HG++YYKQLLEQNKQYIQEP TVEKC+LLSKQL YTRLA
Sbjct: 1   MASKLHQLQSKACQATQFACKHGSSYYKQLLEQNKQYIQEPATVEKCSLLSKQLLYTRLA 60

Query: 61  SIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY 120
           SIP R E+F KELDYVKNLWKNRQ+LKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY
Sbjct: 61  SIPGRYESFWKELDYVKNLWKNRQELKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY 120

Query: 121 YV 122
           YV
Sbjct: 121 YV 122

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429460|ref|XP_002277333.1| PREDICTED: uncharacterized protein LOC100267911 [Vitis vinifera] gi|147818794|emb|CAN67282.1| hypothetical protein VITISV_021594 [Vitis vinifera] gi|296081617|emb|CBI20622.3| unnamed protein product [Vitis vinifera]

 Score =  223 bits (569), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 108/122 (88%), Positives = 114/122 (93%)

Query: 1   MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLA 60
           MASKL QLQSKA QAS+FV++HG AYYKQL+EQNKQYIQEPPTVEKCNLLSKQLFYTRLA
Sbjct: 1   MASKLVQLQSKASQASQFVAKHGCAYYKQLMEQNKQYIQEPPTVEKCNLLSKQLFYTRLA 60

Query: 61  SIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY 120
           SIP R EAF KELD VK LWKNRQ++KVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY
Sbjct: 61  SIPGRYEAFWKELDCVKQLWKNRQEMKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY 120

Query: 121 YV 122
           YV
Sbjct: 121 YV 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722779|ref|NP_001235976.1| uncharacterized protein LOC100499783 [Glycine max] gi|255626489|gb|ACU13589.1| unknown [Glycine max] gi|255634156|gb|ACU17441.1| unknown [Glycine max]

 Score =  222 bits (566), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 105/122 (86%), Positives = 114/122 (93%)

Query: 1   MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLA 60
           MASKLQ+LQS ACQAS+FVS  GT YY+QLLEQNKQ+IQEPPTVEKCNLL+KQLFYTRLA
Sbjct: 1   MASKLQKLQSAACQASQFVSSRGTNYYRQLLEQNKQHIQEPPTVEKCNLLAKQLFYTRLA 60

Query: 61  SIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY 120
           SIP R E+F KELDYVKNLWKNR++LKVEDAGIAALFGLECFAW+C GEIVGRGFTFTGY
Sbjct: 61  SIPGRNESFWKELDYVKNLWKNRKELKVEDAGIAALFGLECFAWYCCGEIVGRGFTFTGY 120

Query: 121 YV 122
           YV
Sbjct: 121 YV 122

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550826|ref|XP_002516461.1| hydrogen-transporting ATP synthase, rotational mechanism, putative [Ricinus communis] gi|223544281|gb|EEF45802.1| hydrogen-transporting ATP synthase, rotational mechanism, putative [Ricinus communis]

 Score =  222 bits (565), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 106/122 (86%), Positives = 113/122 (92%)

Query: 1   MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLA 60
           MASKL QLQSKA QAS+FV++HG AY+KQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRL 
Sbjct: 1   MASKLAQLQSKATQASQFVAKHGCAYFKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLE 60

Query: 61  SIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY 120
           SIP R EAF KELDYVK+LWKNR DLKVEDAGIA +FGLECFAWFCAGEIVGRGFTFTGY
Sbjct: 61  SIPGRYEAFWKELDYVKHLWKNRTDLKVEDAGIATMFGLECFAWFCAGEIVGRGFTFTGY 120

Query: 121 YV 122
           +V
Sbjct: 121 HV 122

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
TAIR|locus:2051960	122	AT2G19680 [Arabidopsis thalian	0.991	0.991	0.842	1.9e-51
TAIR|locus:2136789	122	AT4G26210 [Arabidopsis thalian	0.991	0.991	0.818	3.1e-51
TAIR|locus:2118254	122	AT4G29480 [Arabidopsis thalian	0.991	0.991	0.818	5.1e-51

TAIR|locus:2051960 AT2G19680 [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 102/121 (84%), Positives = 109/121 (90%)

Query:     1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLA 60
             MASKL QLQSKACQASKFV++HG +YYKQLLEQNKQYIQEP T+EKC+ LSKQL YTRLA
Sbjct:     1 MASKLVQLQSKACQASKFVAKHGNSYYKQLLEQNKQYIQEPATIEKCSELSKQLLYTRLA 60

Query:    61 SIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY 120
             SIP R E F KE+DY KNL KNR +LKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY
Sbjct:    61 SIPGRYETFRKEVDYAKNLLKNRANLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY 120

Query:   121 Y 121
             Y
Sbjct:   121 Y 121

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2136789 AT4G26210 [Arabidopsis thaliana (taxid:3702)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 99/121 (81%), Positives = 110/121 (90%)

Query:     1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLA 60
             MASKL QL+SKAC+ASKFVS+HGT YYKQLL++NK YIQEP T+EKCN LSKQL YTRLA
Sbjct:     1 MASKLLQLKSKACEASKFVSKHGTTYYKQLLDKNKMYIQEPATIEKCNELSKQLLYTRLA 60

Query:    61 SIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY 120
             SIP R E+F KE+++VK LWKNR DLKVEDAGIAALFGLECFAW+CAGEIVGRGFTFTGY
Sbjct:    61 SIPGRSESFWKEVNHVKGLWKNRADLKVEDAGIAALFGLECFAWYCAGEIVGRGFTFTGY 120

Query:   121 Y 121
             Y
Sbjct:   121 Y 121

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=ISS

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2118254 AT4G29480 [Arabidopsis thaliana (taxid:3702)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 99/121 (81%), Positives = 108/121 (89%)

Query:     1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLA 60
             MASKL Q+QSKAC+ASKFV++HGT+YY+QLLE+NKQYIQEP TVEKC  LSKQL YTRLA
Sbjct:     1 MASKLIQVQSKACEASKFVAKHGTSYYRQLLEKNKQYIQEPATVEKCQELSKQLLYTRLA 60

Query:    61 SIPTRREAFLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGY 120
             SIP R E F KE+DY KNLWKNR  LKVEDAGIAALFGLECFAW+CAGEI GRGFTFTGY
Sbjct:    61 SIPGRYETFWKEVDYAKNLWKNRSGLKVEDAGIAALFGLECFAWYCAGEIAGRGFTFTGY 120

Query:   121 Y 121
             Y
Sbjct:   121 Y 121


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.410    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      122       122   0.00091  102 3  11 22  0.47    30
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  588 (63 KB)
  Total size of DFA:  137 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.43u 0.08s 14.51t   Elapsed:  00:00:06
  Total cpu time:  14.43u 0.08s 14.51t   Elapsed:  00:00:06
  Start:  Mon May 20 22:32:24 2013   End:  Mon May 20 22:32:30 2013

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0019932 "second-messenger-mediated signaling" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_XVIII0041	SubName- Full=Putative uncharacterized protein; (123 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0023015401	SubName- Full=Putative uncharacterized protein; (216 aa)						•			0.899
	fgenesh4_pm.C_LG_II000842	inorganic pyrophosphatase (EC-3.6.1.1) (215 aa)						•			0.899
	fgenesh4_pg.C_LG_VII001101	SubName- Full=Putative uncharacterized protein; (213 aa)						•			0.899
	eugene3.00090843	inorganic pyrophosphatase (EC-3.6.1.1) (298 aa)						•			0.899
	estExt_fgenesh4_pm.C_LG_XIV0223	SubName- Full=Putative uncharacterized protein; (216 aa)						•			0.899
	estExt_fgenesh4_pg.C_LG_XIII0040	vacuolar H+-translocating inorganic pyrophosphatase (EC-3.6.1.1) (757 aa)						•			0.899
	estExt_fgenesh4_pg.C_1520062	SubName- Full=Putative uncharacterized protein; (768 aa)						•			0.899
	estExt_fgenesh4_pg.C_1330100	vacuolar H+-translocating inorganic pyrophosphatase (EC-3.6.1.1) (757 aa)						•			0.899
	estExt_Genewise1_v1.C_LG_X3050	vacuolar H+-translocating inorganic pyrophosphatase (636 aa)						•			0.899
	estExt_Genewise1_v1.C_LG_I4261	SubName- Full=Putative uncharacterized protein; (296 aa)						•			0.899

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	122
pfam04718	103	pfam04718, ATP-synt_G, Mitochondrial ATP synthase	9e-29

>gnl|CDD|218226 pfam04718, ATP-synt_G, Mitochondrial ATP synthase g subunit

 Score =  100 bits (250), Expect = 9e-29
 Identities = 36/114 (31%), Positives = 49/114 (42%), Gaps = 14/114 (12%)

Query: 12  ACQASKFVSQHGTAYYKQLLEQNKQYIQ---EPPTVEKCNLLSKQLFYTRLASIPTRREA 68
             +A+  V+     Y K  LE  KQ  +    PPT      + +QLF             
Sbjct: 1   VAKATTLVN-KAVYYSKVGLEIFKQVAKVELAPPTPADFQEVYQQLFKLIK--------- 50

Query: 69  FLKELDYVKNLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV 122
           F K     KNL +N ++L V++A +  L G E   WF  GEI+GR     GY V
Sbjct: 51  FAKSGAKPKNLLENLKNLTVKEAVLNGLVGAEVLGWFYVGEIIGR-RHLVGYKV 103

The Fo sector of the ATP synthase is a membrane bound complex which mediates proton transport. It is composed of nine different polypeptide subunits (a, b, c, d, e, f, g F6, A6L). The function of subunit g is currently unknown. The conserved region covers all but the very N-terminus of the member sequences. No prokaryotic members have been identified thus far. Length = 103

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
KOG4103	103	consensus Mitochondrial F1F0-ATP synthase, subunit	100.0
PF04718	103	ATP-synt_G: Mitochondrial ATP synthase g subunit;	100.0

>KOG4103 consensus Mitochondrial F1F0-ATP synthase, subunit g/ATP20 [Energy production and conversion]

Probab=100.00  E-value=2e-33  Score=202.56  Aligned_cols=100  Identities=32%  Similarity=0.485  Sum_probs=96.5

Q ss_pred             ChhHHHHHHHHHHHHHHHHhhhhhHhHHHHHHHhhhhh---cCCCChhhHHHHHHHHhhhhccccchHHHHHHHHHHHHH
Q 033306            1 MASKLQQLQSKACQASKFVSQHGTAYYKQLLEQNKQYI---QEPPTVEKCNLLSKQLFYTRLASIPTRREAFLKELDYVK   77 (122)
Q Consensus         1 ma~~l~~l~~ka~~~~~~~~k~~~~~~k~~l~~~~~y~---~~PPt~~k~~~L~k~~fyt~la~iP~~~~~~~k~v~~~k   77 (122)
                      ||..+.+|++|+..+++    .+..|.+|.++.+|.|.   |.||||               ||||..++++.++.+.++
T Consensus         1 ma~~~~~l~~K~~~L~~----~~~~~~~p~l~~~~~y~K~eL~PPt~---------------Ad~pai~q~l~~~~~~~~   61 (103)
T KOG4103|consen    1 MANYMSGLVEKAANLVN----AALTYAKPRLAIFWKYAKVELAPPTP---------------ADIPAIKQDLAKLKKFAQ   61 (103)
T ss_pred             CchHHHHHHHHHHHHHH----HHHHhcCchHHHHHHHHhcccCCCCh---------------hhHHHHHHHHHHhHHHHh
Confidence            89999999999999999    88888899999999997   999999               999999999999999999


Q ss_pred             HHhhhcccccHHHHHHHHHHHHHHHHHHHhhhhcccCcccccccC
Q 033306           78 NLWKNRQDLKVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV  122 (122)
Q Consensus        78 ~~~~~~~~LtVkea~~~~Lv~~Ev~~WF~vGEiIGR~f~ivGY~V  122 (122)
                      ++  ..+||||+|+++|++|++||++||||||||||| +|+||+|
T Consensus        62 t~--~~Knltv~Eall~~~v~~Evi~wf~vGEiIGrR-~ivGY~v  103 (103)
T KOG4103|consen   62 TG--CYKNLTVKEALLNGLVTLEVIFWFYVGEIIGRR-HIVGYKV  103 (103)
T ss_pred             hh--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccc-ccccccC
Confidence            98  778999999999999999999999999999999 9999997

>PF04718 ATP-synt_G: Mitochondrial ATP synthase g subunit; InterPro: IPR006808 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=100.00  E-value=3.3e-33  Score=200.29  Aligned_cols=99  Identities=33%  Similarity=0.443  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHhhhhhHhHHHHHHHhhhhh---cCCCChhhHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHhhhcccc
Q 033306           10 SKACQASKFVSQHGTAYYKQLLEQNKQYI---QEPPTVEKCNLLSKQLFYTRLASIPTRREAFLKELDYVKNLWKNRQDL   86 (122)
Q Consensus        10 ~ka~~~~~~~~k~~~~~~k~~l~~~~~y~---~~PPt~~k~~~L~k~~fyt~la~iP~~~~~~~k~v~~~k~~~~~~~~L   86 (122)
                      +|+..+++    +++.|+|+.||.+++|.   +.|||+++|+++.+.+++...         +++..++.|+.|++++||
T Consensus         2 ~~~~~l~~----~~v~~~kv~le~~k~v~k~El~PPt~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~~l   68 (103)
T PF04718_consen    2 AKVTSLVN----PAVYYSKVGLELFKQVYKKELAPPTPAEFQSVYQQLFKTVK---------SAKSGSSPKSKLKQWKNL   68 (103)
T ss_pred             chHHHHHH----HHHHHhHHHHHHHhHHHhhccCCcCHHHHHHHHHHHHHHHH---------HhhhhhhHHHHHHHhhcC
Confidence            56666666    89999999999999999   999999777777777776665         556666777889889999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHhhhhcccCcccccccC
Q 033306           87 KVEDAGIAALFGLECFAWFCAGEIVGRGFTFTGYYV  122 (122)
Q Consensus        87 tVkea~~~~Lv~~Ev~~WF~vGEiIGR~f~ivGY~V  122 (122)
                      |++|++.++++|+||++||||||||||| +|+||+|
T Consensus        69 ~~~e~~~~~l~~~Ev~~wF~vGEiIGRr-~ivGY~V  103 (103)
T PF04718_consen   69 TVKEAAKNGLVGAEVYGWFFVGEIIGRR-SIVGYKV  103 (103)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhheeeccC-ceeCccC
Confidence            9999999999999999999999999998 9999998

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents the G subunit found in the F0 complex of F-ATPases in mitochondria. The function of subunit G is currently unknown. There is no counterpart in chloroplast or bacterial F-ATPases identified so far []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	122
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 37.5 bits (86), Expect = 5e-04
 Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 46/135 (34%)

Query: 3   SKLQQLQSKACQASKFVSQHGTAYY-KQLLE----QNKQYIQEPP------TVEKCN--- 48
             L +L+      +K V   G     K  +      + +   +         ++ CN   
Sbjct: 142 QALLELRP-----AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 49  --LLSKQLFYTRL-----------ASIPTRREAFLKELDYVKNLWKNRQ---------DL 86
             L   Q    ++           ++I  R  +   EL   + L K++          + 
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL---RRLLKSKPYENCLLVLLN- 252

Query: 87  KVEDAGIAALFGLEC 101
            V++A     F L C
Sbjct: 253 -VQNAKAWNAFNLSC 266

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00