Citrus Sinensis ID: 033318

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
MNSRRDYRNSKVALFDGIEEGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHcccccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mnsrrdyrnsKVALFDgieeggirasssysheidehdnERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERmgndmdasrgvlsgtMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR
Flexible Loop (DISEMBL)
mnsrrdyrnskvalfdgieeggirasSSYSHEIDEHDNERALEGLQDRVNLLKrlsgdineevdTHNRMlermgndmdasrgvlsgtMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR
Low Complexity Region (SEG)
MNSRRDYRNSKVALFDGIEEGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR
Disordered region (IsUnstruct)
***************************************************************************************MDKFKMVFETKSSRRMFTLVASFVVIFLIVYYL**
Disordered Region (DISOPRED)
*************************************************NLLKRLSGDINEEVDTHNRMLERMGNDM****************VFETKSSRRMFTLVASFVVIFLIVYYLTR
Disordered Region (DISEMBL)
********NSKVALFDGIEEGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR
Disordered Region (DISPRO)
******************EEGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSRRDYRNSKVALFDGIEEGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	122	2.2.26 [Sep-21-2011]
Q9M2J9	122	Bet1-like SNARE 1-1 OS=Ar	yes	no	1.0	1.0	0.819	2e-53
Q94CG2	130	Bet1-like SNARE 1-2 OS=Ar	no	no	0.983	0.923	0.584	2e-36
O15155	118	BET1 homolog OS=Homo sapi	yes	no	0.901	0.932	0.293	4e-09
O35152	111	BET1-like protein OS=Ratt	yes	no	0.762	0.837	0.284	5e-06
Q5RBX2	111	BET1-like protein OS=Pong	yes	no	0.795	0.873	0.29	9e-06
Q3MHP8	111	BET1-like protein OS=Bos	yes	no	0.778	0.855	0.309	9e-06
Q68EL3	110	BET1-like protein OS=Dani	no	no	0.713	0.790	0.303	2e-05
O35153	111	BET1-like protein OS=Mus	yes	no	0.811	0.891	0.300	4e-05
Q9NYM9	111	BET1-like protein OS=Homo	no	no	0.754	0.828	0.284	8e-05
O60499	249	Syntaxin-10 OS=Homo sapie	no	no	0.745	0.365	0.277	0.0003

>sp|Q9M2J9|BET11_ARATH Bet1-like SNARE 1-1 OS=Arabidopsis thaliana GN=BET11 PE=1 SV=1

 Score =  207 bits (527), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/122 (81%), Positives = 112/122 (91%)

Query: 1   MNSRRDYRNSKVALFDGIEEGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDIN 60
           MN RR+ R  + +LFDGIEEGGIRA+SSYSHEI+EH+NERALEGLQDRV LLKRLSGDIN
Sbjct: 1   MNPRREPRGGRSSLFDGIEEGGIRAASSYSHEINEHENERALEGLQDRVILLKRLSGDIN 60

Query: 61  EEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYL 120
           EEVDTHNRML+RMGNDMD+SRG LSGTMD+FK VFETKSSRRM TLVASFV +FL++YYL
Sbjct: 61  EEVDTHNRMLDRMGNDMDSSRGFLSGTMDRFKTVFETKSSRRMLTLVASFVGLFLVIYYL 120

Query: 121 TR 122
           TR
Sbjct: 121 TR 122

Required for vesicular transport from the ER to the Golgi complex. Functions as a SNARE associated with ER-derived vesicles.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94CG2|BET12_ARATH Bet1-like SNARE 1-2 OS=Arabidopsis thaliana GN=BET12 PE=2 SV=4

 Score =  150 bits (379), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/125 (58%), Positives = 103/125 (82%), Gaps = 5/125 (4%)

Query: 1   MNSRRDYRNSKVALFDGI---EEGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSG 57
           MN RR+ R S+ +LFDG+   EEG +RASSSY+H  DE DN+ ALE LQDRV+ LKR++G
Sbjct: 1   MNFRRENRASRTSLFDGLDGLEEGRLRASSSYAH--DERDNDEALENLQDRVSFLKRVTG 58

Query: 58  DINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIV 117
           DI+EEV+ HNR+L+++GN MD++RG++SGT+++FK+VFE KS+R+   L+A FV++FLI+
Sbjct: 59  DIHEEVENHNRLLDKVGNKMDSARGIMSGTINRFKLVFEKKSNRKSCKLIAYFVLLFLIM 118

Query: 118 YYLTR 122
           YYL R
Sbjct: 119 YYLIR 123

Required for vesicular transport from the ER to the Golgi complex. Functions as a SNARE associated with ER-derived vesicles.

Arabidopsis thaliana (taxid: 3702)

>sp|O15155|BET1_HUMAN BET1 homolog OS=Homo sapiens GN=BET1 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 6/116 (5%)

Query: 11  KVALFDGIEEGGI----RASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTH 66
           +  L +G+  G       A+S YS    E +NER  E L+ +V  +K LS +I  EV T 
Sbjct: 3   RAGLGEGVPPGNYGNYGYANSGYSA--CEEENERLTESLRSKVTAIKSLSIEIGHEVKTQ 60

Query: 67  NRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR 122
           N++L  M +  D++ G L  TM K K++     ++ +  ++   + +F I+Y++ +
Sbjct: 61  NKLLAEMDSQFDSTTGFLGKTMGKLKILSRGSQTKLLCYMMLFSLFVFFIIYWIIK 116

Required for vesicular transport from the ER to the Golgi complex. Functions as a SNARE involved in the docking process of ER-derived vesicles with the cis-Golgi membrane.

Homo sapiens (taxid: 9606)

>sp|O35152|BET1L_RAT BET1-like protein OS=Rattus norvegicus GN=Bet1l PE=1 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 2/95 (2%)

Query: 26  SSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLS 85
           SS    EI + +N+R  + L  +V  LK L+ DI+ + +  NR L+ M +D  +  G+L+
Sbjct: 9   SSGAVEEIVDRENKRMADSLASKVTRLKSLALDIDRDTEDQNRYLDGMDSDFTSVTGLLT 68

Query: 86  GTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYL 120
           G++ +F  V   +S R    L+    V+ ++ +++
Sbjct: 69  GSVKRFSTV--ARSGRDTRKLLCGMAVVLIVAFFI 101

Vesicle SNARE required for targeting and fusion of retrograde transport vesicles with the Golgi complex. Required for the integrity of the Golgi complex.

Rattus norvegicus (taxid: 10116)

>sp|Q5RBX2|BET1L_PONAB BET1-like protein OS=Pongo abelii GN=BET1L PE=3 SV=1

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 3/100 (3%)

Query: 26  SSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLS 85
           S     EI + +N+R  + L  +V  LK L+ DI+++ +  NR L+ M +D  +  G+L+
Sbjct: 9   SPGAVEEILDRENKRMADNLASKVTRLKSLALDIDKDAEDQNRYLDGMDSDFTSMTGLLT 68

Query: 86  GTMDKFK-MVFETKSSRRMFT--LVASFVVIFLIVYYLTR 122
           G++ +F  M    + +R++     V   V  F++ Y+L+R
Sbjct: 69  GSVKRFSTMARSGRDNRKLLCGMAVGLIVAFFILSYFLSR 108

Vesicle SNARE required for targeting and fusion of retrograde transport vesicles with the Golgi complex. Required for the integrity of the Golgi complex.

Pongo abelii (taxid: 9601)

>sp|Q3MHP8|BET1L_BOVIN BET1-like protein OS=Bos taurus GN=BET1L PE=3 SV=1

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 2/97 (2%)

Query: 26  SSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLS 85
           S     EI + +N+R  + L  +V  LK L+ DI+ + +  NR L+ M +D  +  G+L+
Sbjct: 9   SPGAVEEILDRENKRMADSLASKVTRLKSLALDIDRDAEDQNRYLDGMDSDFTSMTGLLT 68

Query: 86  GTMDKFK-MVFETKSSRRMFTLVA-SFVVIFLIVYYL 120
           G++ +F  M    + +R++   VA   +V F I+ YL
Sbjct: 69  GSVKRFSTMARSGRDNRKLLCGVAVGLIVAFFILSYL 105

Vesicle SNARE required for targeting and fusion of retrograde transport vesicles with the Golgi complex. Required for the integrity of the Golgi complex.

Bos taurus (taxid: 9913)

>sp|Q68EL3|BET1L_DANRE BET1-like protein OS=Danio rerio GN=bet1l PE=3 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 54/89 (60%), Gaps = 2/89 (2%)

Query: 35  EHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFK-M 93
           + +N+R  E L  +V+ LK L+ DI+++ +  N  L+ M ++  ++ G+L+G++ +F  M
Sbjct: 17  DAENKRMAENLASKVSRLKSLAYDIDKDAEEQNAYLDGMDSNFLSATGLLTGSVKRFSTM 76

Query: 94  VFETKSSRRMFTLVA-SFVVIFLIVYYLT 121
           V   + +R++   V+   VV F ++YYL 
Sbjct: 77  VRSGRDNRKILCYVSVGLVVAFFLLYYLV 105

Vesicle SNARE required for targeting and fusion of retrograde transport vesicles with the Golgi complex. Required for the integrity of the Golgi complex.

Danio rerio (taxid: 7955)

>sp|O35153|BET1L_MOUSE BET1-like protein OS=Mus musculus GN=Bet1l PE=3 SV=1

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 60/103 (58%), Gaps = 4/103 (3%)

Query: 24  RASSSYSHE-IDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRG 82
           RA SS + E I + +N+R  + L  +V  LK L+ DI+ + +  NR L+ M +D  +  G
Sbjct: 6   RAQSSGAVEDILDRENKRMADSLASKVTRLKSLALDIDRDTEDQNRYLDGMDSDFTSVTG 65

Query: 83  VLSGTMDKFK-MVFETKSSRRMFTLVASFVVI--FLIVYYLTR 122
           +L+G++ +F  M    + +R++   +A  +++  F++ Y L+R
Sbjct: 66  LLTGSVKRFSTMARSGRDNRKLLCGMAVVLIVAFFILSYLLSR 108

Vesicle SNARE required for targeting and fusion of retrograde transport vesicles with the Golgi complex. Required for the integrity of the Golgi complex.

Mus musculus (taxid: 10090)

>sp|Q9NYM9|BET1L_HUMAN BET1-like protein OS=Homo sapiens GN=BET1L PE=1 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 3/95 (3%)

Query: 31  HEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDK 90
            EI + +N+R  + L  +V  LK L+ DI+ + +  NR L+ M +D  +   +L+G++ +
Sbjct: 14  EEILDRENKRMADSLASKVTRLKSLALDIDRDAEDQNRYLDGMDSDFTSMTSLLTGSVKR 73

Query: 91  FK-MVFETKSSRRMFT--LVASFVVIFLIVYYLTR 122
           F  M    + +R++     V   V  F++ Y+L+R
Sbjct: 74  FSTMARSGQDNRKLLCGMAVGLIVAFFILSYFLSR 108

Vesicle SNARE required for targeting and fusion of retrograde transport vesicles with the Golgi complex. Required for the integrity of the Golgi complex.

Homo sapiens (taxid: 9606)

>sp|O60499|STX10_HUMAN Syntaxin-10 OS=Homo sapiens GN=STX10 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 10/101 (9%)

Query: 16  DGIEEGGIRASSSYSHE--------IDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHN 67
           D ++   + A+S Y  E        +DE D +  LE +   + +LK +SG + EE+D   
Sbjct: 135 DLLDASAVSATSRYIEEQQATQQLIMDEQDQQ--LEMVSGSIQVLKHMSGRVGEELDEQG 192

Query: 68  RMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVA 108
            ML+    +MD ++  + G + K   V    S RR +  +A
Sbjct: 193 IMLDAFAQEMDHTQSRMDGVLRKLAKVSHMTSDRRQWCAIA 233

SNARE involved in vesicular transport from the late endosomes to the trans-Golgi network.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
188529683	122	bet1-like snare 1-1 [Malus x domestica]	1.0	1.0	0.868	1e-56
225437830	123	PREDICTED: bet1-like SNARE 1-1 [Vitis vi	1.0	0.991	0.861	2e-55
224085617	123	predicted protein [Populus trichocarpa]	1.0	0.991	0.886	8e-55
224062165	123	predicted protein [Populus trichocarpa]	1.0	0.991	0.878	1e-54
351721243	126	uncharacterized protein LOC100500329 [Gl	1.0	0.968	0.865	2e-53
255560001	125	protein transporter, putative [Ricinus c	0.967	0.944	0.881	3e-53
351725449	126	uncharacterized protein LOC100500028 [Gl	1.0	0.968	0.865	4e-53
388496382	127	unknown [Medicago truncatula]	1.0	0.960	0.857	1e-52
388500812	124	unknown [Lotus japonicus]	1.0	0.983	0.830	6e-52
15230969	122	Bet1-like SNARE 1-1 [Arabidopsis thalian	1.0	1.0	0.819	7e-52

>gi|188529683|gb|ACD62528.1| bet1-like snare 1-1 [Malus x domestica]

 Score =  223 bits (568), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 106/122 (86%), Positives = 120/122 (98%)

Query: 1   MNSRRDYRNSKVALFDGIEEGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDIN 60
           MN+RRD+R +KVALFDGIEEGGIR+S+SYSHEIDEHDNERA++GLQDRVNLLKRLSGDI+
Sbjct: 1   MNARRDFRGNKVALFDGIEEGGIRSSASYSHEIDEHDNERAVDGLQDRVNLLKRLSGDIH 60

Query: 61  EEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYL 120
           EEV+THN ML+RMGNDMD+SRGVLSGTMDKFKMVFETKSS+RMFTLVASFVVIFL++YYL
Sbjct: 61  EEVETHNHMLDRMGNDMDSSRGVLSGTMDKFKMVFETKSSQRMFTLVASFVVIFLVIYYL 120

Query: 121 TR 122
           TR
Sbjct: 121 TR 122

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437830|ref|XP_002262985.1| PREDICTED: bet1-like SNARE 1-1 [Vitis vinifera] gi|297744115|emb|CBI37085.3| unnamed protein product [Vitis vinifera]

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 106/123 (86%), Positives = 121/123 (98%), Gaps = 1/123 (0%)

Query: 1   MNSRRDYRNSKVALFDGIEEGGIRASSSYS-HEIDEHDNERALEGLQDRVNLLKRLSGDI 59
           MNSRRDYR +++ALFDGIEEGGIRASSSYS HEIDEHDNERA++GLQDRVNLLKRL+GDI
Sbjct: 1   MNSRRDYRGNRIALFDGIEEGGIRASSSYSSHEIDEHDNERAVDGLQDRVNLLKRLTGDI 60

Query: 60  NEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYY 119
           +EEV++HNRML+R+GNDMDASRG+LSGTMD+FKMVFET+SSRRMFTLVASFVVIFLI+YY
Sbjct: 61  HEEVESHNRMLDRVGNDMDASRGILSGTMDRFKMVFETRSSRRMFTLVASFVVIFLIIYY 120

Query: 120 LTR 122
           LTR
Sbjct: 121 LTR 123

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085617|ref|XP_002307637.1| predicted protein [Populus trichocarpa] gi|222857086|gb|EEE94633.1| predicted protein [Populus trichocarpa]

 Score =  217 bits (552), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 109/123 (88%), Positives = 116/123 (94%), Gaps = 1/123 (0%)

Query: 1   MNSRRDYRNSKVALFDGIEEGGIRASSSYS-HEIDEHDNERALEGLQDRVNLLKRLSGDI 59
           MNSRRD RN++ ALFDGIEEGGIRASSSYS HEIDE DNERALEGLQDRV LLKRLSGDI
Sbjct: 1   MNSRRDIRNNRAALFDGIEEGGIRASSSYSSHEIDEQDNERALEGLQDRVILLKRLSGDI 60

Query: 60  NEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYY 119
           NEEVD HN ML+RMGNDMD+SRGVLSGTMD+FKMVFETKSSRRMFTLVASFVV+FLI+YY
Sbjct: 61  NEEVDNHNLMLDRMGNDMDSSRGVLSGTMDRFKMVFETKSSRRMFTLVASFVVLFLIIYY 120

Query: 120 LTR 122
           LTR
Sbjct: 121 LTR 123

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062165|ref|XP_002300787.1| predicted protein [Populus trichocarpa] gi|222842513|gb|EEE80060.1| predicted protein [Populus trichocarpa]

 Score =  216 bits (551), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 108/123 (87%), Positives = 117/123 (95%), Gaps = 1/123 (0%)

Query: 1   MNSRRDYRNSKVALFDGIEEGGIRASSSYS-HEIDEHDNERALEGLQDRVNLLKRLSGDI 59
           MNSRRD RN++ ALFDGIEEGGIRASSSYS HEIDE DNERALEGL+DRV+LLKRLSGDI
Sbjct: 1   MNSRRDVRNNRAALFDGIEEGGIRASSSYSSHEIDEQDNERALEGLEDRVSLLKRLSGDI 60

Query: 60  NEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYY 119
           NEEVD+HN ML+RMGNDMD+SRGVLSGTMD+FKMVFETKSSRRM TLVASFVVIFLI+YY
Sbjct: 61  NEEVDSHNLMLDRMGNDMDSSRGVLSGTMDRFKMVFETKSSRRMLTLVASFVVIFLIIYY 120

Query: 120 LTR 122
           LTR
Sbjct: 121 LTR 123

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721243|ref|NP_001236435.1| uncharacterized protein LOC100500329 [Glycine max] gi|255630034|gb|ACU15369.1| unknown [Glycine max]

 Score =  212 bits (540), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 109/126 (86%), Positives = 120/126 (95%), Gaps = 4/126 (3%)

Query: 1   MNSRRDYRNSKVALFDGIEEGGIRASSSYS----HEIDEHDNERALEGLQDRVNLLKRLS 56
           MN+RRD RN++VALFDGIEEGGIRASS YS    HEIDEHDNE+AL+GLQDRVNLLKRLS
Sbjct: 1   MNARRDSRNNRVALFDGIEEGGIRASSLYSSTSSHEIDEHDNEQALDGLQDRVNLLKRLS 60

Query: 57  GDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLI 116
           GDINEEVD+HNRML+RMGNDMD+SRGVLSGTMDKFKMVFETKSSRRMF+LVASFVV+FLI
Sbjct: 61  GDINEEVDSHNRMLDRMGNDMDSSRGVLSGTMDKFKMVFETKSSRRMFSLVASFVVLFLI 120

Query: 117 VYYLTR 122
           +YYLTR
Sbjct: 121 IYYLTR 126

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560001|ref|XP_002521019.1| protein transporter, putative [Ricinus communis] gi|223539856|gb|EEF41436.1| protein transporter, putative [Ricinus communis]

 Score =  212 bits (539), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 104/118 (88%), Positives = 112/118 (94%)

Query: 5   RDYRNSKVALFDGIEEGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVD 64
           RD R S+ ALFDGIEEGGIRASSSYSHEIDE DNERA+EGLQDRV LLKRLSGDI+EEV+
Sbjct: 8   RDVRTSRTALFDGIEEGGIRASSSYSHEIDEQDNERAMEGLQDRVILLKRLSGDIHEEVE 67

Query: 65  THNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR 122
            HNRML+RMGNDMD+SRGVLSGTMD+FKMVFETKSSRRMFTLVASF+VIFLIVYYLTR
Sbjct: 68  GHNRMLDRMGNDMDSSRGVLSGTMDRFKMVFETKSSRRMFTLVASFLVIFLIVYYLTR 125

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725449|ref|NP_001235813.1| uncharacterized protein LOC100500028 [Glycine max] gi|255628621|gb|ACU14655.1| unknown [Glycine max]

 Score =  211 bits (538), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 109/126 (86%), Positives = 120/126 (95%), Gaps = 4/126 (3%)

Query: 1   MNSRRDYRNSKVALFDGIEEGGIRASSSYS----HEIDEHDNERALEGLQDRVNLLKRLS 56
           MN+RRD RN++VALFDGIEEGGIRASS YS    HEIDEHDNE+AL+GLQDRVNLLKRLS
Sbjct: 1   MNARRDGRNNRVALFDGIEEGGIRASSLYSSSSSHEIDEHDNEQALDGLQDRVNLLKRLS 60

Query: 57  GDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLI 116
           GDINEEVD+HNRML+RMGNDMD+SRGVLSGTMDKFKMVFETKSSRRMF+LVASFVV+FLI
Sbjct: 61  GDINEEVDSHNRMLDRMGNDMDSSRGVLSGTMDKFKMVFETKSSRRMFSLVASFVVLFLI 120

Query: 117 VYYLTR 122
           +YYLTR
Sbjct: 121 IYYLTR 126

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496382|gb|AFK36257.1| unknown [Medicago truncatula]

 Score =  209 bits (532), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 108/126 (85%), Positives = 119/126 (94%), Gaps = 4/126 (3%)

Query: 1   MNSRRDYRNSKVALFDGIEEGGIRASSSYS----HEIDEHDNERALEGLQDRVNLLKRLS 56
           MNSRRD RN++VALFDGIEEGGIRASS YS    HEIDEHDNE+A++GLQDRVNLLKRLS
Sbjct: 2   MNSRRDTRNNRVALFDGIEEGGIRASSMYSSGSSHEIDEHDNEQAMDGLQDRVNLLKRLS 61

Query: 57  GDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLI 116
           GDI+EEVD+HNRML+ MGNDMD+SRGVLSGTMDKFKMVFETKSSRRMF+LVASFVVIFLI
Sbjct: 62  GDIHEEVDSHNRMLDHMGNDMDSSRGVLSGTMDKFKMVFETKSSRRMFSLVASFVVIFLI 121

Query: 117 VYYLTR 122
           +YYLTR
Sbjct: 122 IYYLTR 127

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500812|gb|AFK38472.1| unknown [Lotus japonicus]

 Score =  207 bits (527), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 103/124 (83%), Positives = 114/124 (91%), Gaps = 2/124 (1%)

Query: 1   MNSRRDYRNSKVALFDGIEEGGIRASSSY--SHEIDEHDNERALEGLQDRVNLLKRLSGD 58
           MNSRRD RN+KVALFDGIEEGGIR S+ Y  SHEIDEHDNE+A++GL DRVNL+KRLS D
Sbjct: 1   MNSRRDIRNNKVALFDGIEEGGIRESALYPSSHEIDEHDNEQAMDGLHDRVNLMKRLSRD 60

Query: 59  INEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVY 118
           I EEVD HNRML+RMGNDMD+SRGVLSGTMDKFKMVFE KSS+RMFTLVASFVV+FLI+Y
Sbjct: 61  IQEEVDGHNRMLDRMGNDMDSSRGVLSGTMDKFKMVFEKKSSQRMFTLVASFVVLFLIIY 120

Query: 119 YLTR 122
           YLTR
Sbjct: 121 YLTR 124

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230969|ref|NP_191376.1| Bet1-like SNARE 1-1 [Arabidopsis thaliana] gi|27805428|sp|Q9M2J9.1|BET11_ARATH RecName: Full=Bet1-like SNARE 1-1; Short=AtBET11; AltName: Full=Bet1/Sft1-like SNARE 14a; Short=AtBS14a gi|14030603|gb|AAK52976.1|AF368175_1 Bet1/Sft1-like SNARE AtBS14a [Arabidopsis thaliana] gi|6735329|emb|CAB68155.1| putative protein [Arabidopsis thaliana] gi|26449796|dbj|BAC42021.1| unknown protein [Arabidopsis thaliana] gi|28416841|gb|AAO42951.1| At3g58170 [Arabidopsis thaliana] gi|332646229|gb|AEE79750.1| Bet1-like SNARE 1-1 [Arabidopsis thaliana]

 Score =  207 bits (527), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 100/122 (81%), Positives = 112/122 (91%)

Query: 1   MNSRRDYRNSKVALFDGIEEGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDIN 60
           MN RR+ R  + +LFDGIEEGGIRA+SSYSHEI+EH+NERALEGLQDRV LLKRLSGDIN
Sbjct: 1   MNPRREPRGGRSSLFDGIEEGGIRAASSYSHEINEHENERALEGLQDRVILLKRLSGDIN 60

Query: 61  EEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYL 120
           EEVDTHNRML+RMGNDMD+SRG LSGTMD+FK VFETKSSRRM TLVASFV +FL++YYL
Sbjct: 61  EEVDTHNRMLDRMGNDMDSSRGFLSGTMDRFKTVFETKSSRRMLTLVASFVGLFLVIYYL 120

Query: 121 TR 122
           TR
Sbjct: 121 TR 122

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
TAIR|locus:2085360	122	BS14A "BET1P/SFT1P-like protei	1.0	1.0	0.819	1.5e-49
TAIR|locus:1005716319	130	ATBET12 [Arabidopsis thaliana	0.983	0.923	0.584	2.4e-35
ZFIN|ZDB-GENE-040625-3	113	bet1 "blocked early in transpo	0.860	0.929	0.351	2.1e-13
UNIPROTKB|E1BRC4	115	BET1 "Uncharacterized protein"	0.909	0.965	0.267	1.2e-10
UNIPROTKB|O15155	118	BET1 "BET1 homolog" [Homo sapi	0.786	0.813	0.316	4.1e-10
WB|WBGene00043064	107	nbet-1 [Caenorhabditis elegans	0.827	0.943	0.303	8.4e-10
UNIPROTKB|A6H7A4	118	BET1 "Uncharacterized protein"	0.918	0.949	0.254	3.6e-09
RGD|2203	118	Bet1 "Bet1 golgi vesicular mem	0.901	0.932	0.267	3.6e-09
UNIPROTKB|F1SFA8	118	BET1 "Uncharacterized protein"	0.918	0.949	0.254	4.7e-09
MGI|MGI:1343104	118	Bet1 "blocked early in transpo	0.918	0.949	0.245	9.7e-09

TAIR|locus:2085360 BS14A "BET1P/SFT1P-like protein 14A" [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 100/122 (81%), Positives = 112/122 (91%)

Query:     1 MNSRRDYRNSKVALFDGIEEGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDIN 60
             MN RR+ R  + +LFDGIEEGGIRA+SSYSHEI+EH+NERALEGLQDRV LLKRLSGDIN
Sbjct:     1 MNPRREPRGGRSSLFDGIEEGGIRAASSYSHEINEHENERALEGLQDRVILLKRLSGDIN 60

Query:    61 EEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYL 120
             EEVDTHNRML+RMGNDMD+SRG LSGTMD+FK VFETKSSRRM TLVASFV +FL++YYL
Sbjct:    61 EEVDTHNRMLDRMGNDMDSSRGFLSGTMDRFKTVFETKSSRRMLTLVASFVGLFLVIYYL 120

Query:   121 TR 122
             TR
Sbjct:   121 TR 122

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005484 "SNAP receptor activity" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:1005716319 ATBET12 [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 73/125 (58%), Positives = 103/125 (82%)

Query:     1 MNSRRDYRNSKVALFDGI---EEGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSG 57
             MN RR+ R S+ +LFDG+   EEG +RASSSY+H  DE DN+ ALE LQDRV+ LKR++G
Sbjct:     1 MNFRRENRASRTSLFDGLDGLEEGRLRASSSYAH--DERDNDEALENLQDRVSFLKRVTG 58

Query:    58 DINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIV 117
             DI+EEV+ HNR+L+++GN MD++RG++SGT+++FK+VFE KS+R+   L+A FV++FLI+
Sbjct:    59 DIHEEVENHNRLLDKVGNKMDSARGIMSGTINRFKLVFEKKSNRKSCKLIAYFVLLFLIM 118

Query:   118 YYLTR 122
             YYL R
Sbjct:   119 YYLIR 123

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS;NAS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005484 "SNAP receptor activity" evidence=IGI;NAS

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

ZFIN|ZDB-GENE-040625-3 bet1 "blocked early in transport 1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 38/108 (35%), Positives = 66/108 (61%)

Query:    17 GIEEGGIRASSSYS-HEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGN 75
             G+ EGG + +   S + + E +NE   EGL+D+V+ LK LS DI  EV  HN+ML  M +
Sbjct:     5 GLGEGGPQGNYVASGYSVYEEENEHLQEGLRDKVHALKHLSIDIGNEVKIHNKMLGEMDS 64

Query:    76 DMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVV-IFLIVYYLTR 122
             D D++ G+L  TM + K++    S  +++  +  F + +FL++Y++ +
Sbjct:    65 DFDSTGGLLGATMGRLKLL-SRGSQTKVYCYMLLFALFVFLVLYWVIK 111

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|E1BRC4 BET1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 30/112 (26%), Positives = 60/112 (53%)

Query:    11 KVALFDGIEEGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRML 70
             +  L DG   G    ++S  + + E +NER  E L+ +V+ +K LS +I  EV   N++L
Sbjct:     3 RAGLGDGAPTGNYGYTNS-GYSVYEEENERLTESLRTKVSAIKSLSIEIGTEVKNQNKLL 61

Query:    71 ERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR 122
               M ND D++ G+L  TM + + +     ++ +  ++   + +F + Y++ +
Sbjct:    62 SEMDNDFDSATGLLGATMGRLRRLSRGSQTKLLCYMMLFALFVFFVTYWIIK 113

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|O15155 BET1 "BET1 homolog" [Homo sapiens (taxid:9606)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 31/98 (31%), Positives = 55/98 (56%)

Query:    25 ASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVL 84
             A+S YS    E +NER  E L+ +V  +K LS +I  EV T N++L  M +  D++ G L
Sbjct:    21 ANSGYS--ACEEENERLTESLRSKVTAIKSLSIEIGHEVKTQNKLLAEMDSQFDSTTGFL 78

Query:    85 SGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR 122
               TM K K++     ++ +  ++   + +F I+Y++ +
Sbjct:    79 GKTMGKLKILSRGSQTKLLCYMMLFSLFVFFIIYWIIK 116

GO:0015031 "protein transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031985 "Golgi cisterna" evidence=IEA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

WB|WBGene00043064 nbet-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 31/102 (30%), Positives = 56/102 (54%)

Query:    21 GGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDAS 80
             G +R  +  ++ ++ H N+  + GL  +V  LKR++  I ++V   NR+L  M ND D+S
Sbjct:     6 GQMRGPNQDANYLERH-NDDLVGGLSSKVAALKRVTIAIGDDVREQNRLLNDMDNDFDSS 64

Query:    81 RGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR 122
             +G+L  TM +  +V        +  L+   + +F +VY L+R
Sbjct:    65 KGLLQSTMRRLGLVSRAGGKNMLCYLILFALFVFFVVYCLSR 106

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|A6H7A4 BET1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 29/114 (25%), Positives = 59/114 (51%)

Query:    11 KVALFDGIEEG--GIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNR 68
             +  L +G+  G  G     +  +   E +NER  E L+++V  +K LS +I  EV   N+
Sbjct:     3 RAGLGEGVPPGNYGNYGYPNSGYSACEEENERLTESLRNKVTAIKSLSIEIGHEVKHQNK 62

Query:    69 MLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR 122
             +L  M +  D++ G L  TM K K++     ++ +  ++   + +F ++Y++ +
Sbjct:    63 LLAEMDSQFDSTTGFLGKTMGKLKLLSRGSQTKLLCYMMLFSLFVFFVIYWIIK 116

GO:0000139 "Golgi membrane" evidence=IEA

RGD|2203 Bet1 "Bet1 golgi vesicular membrane trafficking protein" [Rattus norvegicus (taxid:10116)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 31/116 (26%), Positives = 60/116 (51%)

Query:    11 KVALFDGIEEGGIR----ASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTH 66
             +  L DG   GG      A+S Y+    E +N+R  E L+ +V  +K LS +I  EV   
Sbjct:     3 RAGLGDGAPPGGYGNYGYANSGYN--ACEEENDRLTESLRSKVTAIKSLSIEIGHEVKNQ 60

Query:    67 NRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR 122
             N++L  M +  D++ G L  TM + K++     ++ +  ++   + +F ++Y++ +
Sbjct:    61 NKLLAEMDSQFDSTTGFLGKTMGRLKILSRGSQTKLLCYMMLFSLFVFFVIYWIIK 116

GO:0000139 "Golgi membrane" evidence=IEA;ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IDA

GO:0031201 "SNARE complex" evidence=IDA;TAS

GO:0031985 "Golgi cisterna" evidence=IDA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IDA

UNIPROTKB|F1SFA8 BET1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 29/114 (25%), Positives = 59/114 (51%)

Query:    11 KVALFDGIEEG--GIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNR 68
             +  L +G+  G  G     +  +   E +NER  E L+++V  +K LS +I  EV   N+
Sbjct:     3 RAGLGEGVPPGNYGNYGYPNSGYSACEEENERLTESLRNKVTAIKSLSIEIGHEVKHQNK 62

Query:    69 MLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR 122
             +L  M +  D++ G L  TM K K++     ++ +  ++   + +F ++Y++ +
Sbjct:    63 LLAEMDSQFDSTTGFLGKTMGKLKILSRGSQTKLLCYMMLFSLFVFFVIYWIIK 116

GO:0000139 "Golgi membrane" evidence=IEA

MGI|MGI:1343104 Bet1 "blocked early in transport 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 28/114 (24%), Positives = 58/114 (50%)

Query:    11 KVALFDGIEEG--GIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNR 68
             +  L DG   G  G    ++  +   E +N+R  E L+ +V  +K LS +I  EV   N+
Sbjct:     3 RAGLGDGAPPGSYGNYGYANTGYNACEEENDRLTESLRSKVTAIKSLSIEIGHEVKNQNK 62

Query:    69 MLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR 122
             +L  M +  D++ G L  TM + K++     ++ +  ++   + +F ++Y++ +
Sbjct:    63 LLAEMDSQFDSTTGFLGKTMGRLKILSRGSQTKLLCYMMLFSLFVFFVIYWIIK 116

GO:0000139 "Golgi membrane" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0016192 "vesicle-mediated transport" evidence=TAS

GO:0031201 "SNARE complex" evidence=ISO

GO:0031985 "Golgi cisterna" evidence=ISO

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35153	BET1L_MOUSE	No assigned EC number	0.3009	0.8114	0.8918	yes	no
Q9M2J9	BET11_ARATH	No assigned EC number	0.8196	1.0	1.0	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00007496001	SubName- Full=Chromosome chr7 scaffold_192, whole genome shotgun sequence; (123 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00034036001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (218 aa)					•	•	•		0.860
	GSVIVG00016796001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (338 aa)					•	•	•		0.849
	GSVIVG00003818001	SubName- Full=Chromosome chr8 scaffold_150, whole genome shotgun sequence; (224 aa)					•	•	•		0.844
	GSVIVG00032536001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (411 aa)					•	•	•		0.838
	GSVIVG00029255001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (313 aa)					•	•	•		0.836

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	122
pfam05739	62	pfam05739, SNARE, SNARE domain	1e-09
cd00193	60	cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se	0.003

>gnl|CDD|203323 pfam05739, SNARE, SNARE domain

 Score = 50.2 bits (121), Expect = 1e-09
 Identities = 15/62 (24%), Positives = 32/62 (51%)

Query: 38 NERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET 97
           + ALE L+  +  LK+L  D+ EEV+    +L+R+ +++D ++  +     + K     
Sbjct: 1  RDEALEELESSIGELKQLFLDMGEEVEEQGELLDRIDDNVDNTQSRVERANKRLKKAARY 60

Query: 98 KS 99
          + 
Sbjct: 61 QK 62

Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex. Length = 62

>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

 Score = 33.2 bits (77), Expect = 0.003
 Identities = 11/54 (20%), Positives = 28/54 (51%)

Query: 37 DNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDK 90
          + +  LE L+  +  LK++  D+  EV+    +L+R+ +++D +   +     +
Sbjct: 3  ERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKR 56

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
KOG3385	118	consensus V-SNARE [Intracellular trafficking, secr	99.96
KOG3202	235	consensus SNARE protein TLG1/Syntaxin 6 [Intracell	99.81
PF05739	63	SNARE: SNARE domain; InterPro: IPR000727 The proce	99.49
cd00193	60	t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu	99.25
smart00397	66	t_SNARE Helical region found in SNAREs. All alpha-	99.19
KOG3065	273	consensus SNAP-25 (synaptosome-associated protein)	99.18
PF09753	251	Use1: Membrane fusion protein Use1; InterPro: IPR0	99.13
KOG0809	305	consensus SNARE protein TLG2/Syntaxin 16 [Intracel	98.72
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	98.61
KOG0812	311	consensus SNARE protein SED5/Syntaxin 5 [Intracell	98.59
COG5325	283	t-SNARE complex subunit, syntaxin [Intracellular t	98.56
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	98.45
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	98.22
KOG2678	244	consensus Predicted membrane protein [Function unk	98.03
PF03908	92	Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr	97.86
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	97.54
KOG3208	231	consensus SNARE protein GS28 [Intracellular traffi	97.39
KOG3894	316	consensus SNARE protein Syntaxin 18/UFE1 [Intracel	96.74
PF12352	66	V-SNARE_C: Snare region anchored in the vesicle me	96.45
KOG3251	213	consensus Golgi SNAP receptor complex member [Intr	96.44
KOG0860	116	consensus Synaptobrevin/VAMP-like protein [Intrace	96.35
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	96.07
PF10779	71	XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly	95.63
KOG0860	116	consensus Synaptobrevin/VAMP-like protein [Intrace	95.23
PF05957	94	DUF883: Bacterial protein of unknown function (DUF	94.51
PRK00846	77	hypothetical protein; Provisional	91.73
PRK10884	206	SH3 domain-containing protein; Provisional	91.71
KOG0862	216	consensus Synaptobrevin/VAMP-like protein SEC22 [I	91.57
PF09753	251	Use1: Membrane fusion protein Use1; InterPro: IPR0	91.23
PF15188	85	CCDC-167: Coiled-coil domain-containing protein 16	90.9
PF01519	102	DUF16: Protein of unknown function DUF16; InterPro	90.58
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	90.32
COG4575	104	ElaB Uncharacterized conserved protein [Function u	90.31
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	90.16
PF11166	98	DUF2951: Protein of unknown function (DUF2951); In	90.03
PF05531	75	NPV_P10: Nucleopolyhedrovirus P10 protein; InterPr	89.71
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	89.4
PRK00736	68	hypothetical protein; Provisional	88.91
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	88.71
TIGR00383	318	corA magnesium Mg(2+) and cobalt Co(2+) transport	88.58
PRK04325	74	hypothetical protein; Provisional	88.33
PRK00295	68	hypothetical protein; Provisional	87.06
PRK02119	73	hypothetical protein; Provisional	86.85
PRK04406	75	hypothetical protein; Provisional	86.09
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	85.81
PRK02793	72	phi X174 lysis protein; Provisional	85.75
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	81.36
PRK10132	108	hypothetical protein; Provisional	80.85

>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=6.3e-29  Score=170.94  Aligned_cols=115  Identities=38%  Similarity=0.536  Sum_probs=106.1

Q ss_pred             ccccccccCCcc---CCCccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhh
Q 033318            8 RNSKVALFDGIE---EGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVL   84 (122)
Q Consensus         8 ~~~r~~l~~g~~---~~g~~~~~~~~~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L   84 (122)
                      +++|.++|+|-|   ++.|+++++..++.+|.|||+.++.|.++|..||.++.+|++||+.||++||+|+++||+|...|
T Consensus         1 r~~R~g~~dg~~~l~~~~~~a~ss~~~~~le~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L   80 (118)
T KOG3385|consen    1 RGSRFGLFDGSNGLEDGVSRASSSSHLASLERENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFL   80 (118)
T ss_pred             CCcccCcccCCCcccccccccCchhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHH
Confidence            578999999943   68888888888999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhC
Q 033318           85 SGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR  122 (122)
Q Consensus        85 ~~~~krl~kv~~~~~~~~~~~iv~l~v~lf~il~~l~k  122 (122)
                      .+++.|++.+.++++.+.+||++++++|.|||+||.++
T Consensus        81 ~gtm~r~~~~ar~sg~~l~~~m~~f~lV~~fi~~~~lt  118 (118)
T KOG3385|consen   81 SGTMGRLKTMARRSGISLLCWMAVFSLVAFFILWVWLT  118 (118)
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhheeeC
Confidence            99999999999997777799999999888888888764

>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=5e-19  Score=135.93  Aligned_cols=91  Identities=21%  Similarity=0.365  Sum_probs=80.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCCcc-hhHHHH
Q 033318           30 SHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRR-MFTLVA  108 (122)
Q Consensus        30 ~~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~~~-~~~iv~  108 (122)
                      .++++.+|||+.||.|+++|+++|++|..||+|+++|+.+||++++.||.|..+|.++++++.+|.+.++.+. ||+|++
T Consensus       142 ~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~~~il~  221 (235)
T KOG3202|consen  142 LQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCSQWCAILL  221 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHH
Confidence            4688999999999999999999999999999999999999999999999999999999999999999777775 666666


Q ss_pred             HHHHHHHHHHHH
Q 033318          109 SFVVIFLIVYYL  120 (122)
Q Consensus       109 l~v~lf~il~~l  120 (122)
                      +++++++++.++
T Consensus       222 l~~~~~lvv~i~  233 (235)
T KOG3202|consen  222 LVGLLLLVVIIF  233 (235)
T ss_pred             HHHHHHHHHHHh
Confidence            665555444443

>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]

Probab=99.49  E-value=3.1e-13  Score=83.62  Aligned_cols=61  Identities=28%  Similarity=0.489  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318           37 DNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET   97 (122)
Q Consensus        37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~   97 (122)
                      |+|+.|+.|+++|..||+++.+|++||++|+.+||+|+++|+.+...+.++++++.++.+.
T Consensus         1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~   61 (63)
T PF05739_consen    1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKY   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6899999999999999999999999999999999999999999999999999999999875

Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....

>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

Probab=99.25  E-value=3.5e-11  Score=72.83  Aligned_cols=58  Identities=21%  Similarity=0.412  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHH
Q 033318           36 HDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKM   93 (122)
Q Consensus        36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~k   93 (122)
                      +++++.++.|+.+|..|+.++.+|+.||.+|+.+||.++++++.+...++.+.+++.+
T Consensus         2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~k   59 (60)
T cd00193           2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK   59 (60)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6899999999999999999999999999999999999999999999999999999976

>smart00397 t_SNARE Helical region found in SNAREs

Probab=99.19  E-value=1.9e-10  Score=70.60  Aligned_cols=62  Identities=21%  Similarity=0.373  Sum_probs=59.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHH
Q 033318           32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKM   93 (122)
Q Consensus        32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~k   93 (122)
                      ..+++++|+.++.|+..+..+++++.+|+.||.+|+.+||.++++++.+...++.+.+++.+
T Consensus         4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~   65 (66)
T smart00397        4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK   65 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence            56789999999999999999999999999999999999999999999999999999999876

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".

>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=6.9e-11  Score=92.84  Aligned_cols=69  Identities=17%  Similarity=0.291  Sum_probs=65.4

Q ss_pred             CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318           27 SSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF   95 (122)
Q Consensus        27 ~~~~~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~   95 (122)
                      .+..++..+.|+|+.|+.|+.-+++||++|.+||.||+.||..||+|++.+|+...+|..+.+|+++++
T Consensus       205 ~~q~~~~~edeiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kLl  273 (273)
T KOG3065|consen  205 AYQTEPAAEDEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKLL  273 (273)
T ss_pred             hhccCChhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhcC
Confidence            555788889999999999999999999999999999999999999999999999999999999999874

>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport

Probab=99.13  E-value=1e-09  Score=84.86  Aligned_cols=89  Identities=15%  Similarity=0.226  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCCcchhHHHHHHHHH
Q 033318           34 DEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVI  113 (122)
Q Consensus        34 l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~~~~~~iv~l~v~l  113 (122)
                      -+..||+..++|.+-++.||+.+..+++-|++-+..|+.....+++....++.+.+|++...+++.+|+.|+++++++++
T Consensus       161 ~~~~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~~~i~~v~~~  240 (251)
T PF09753_consen  161 HRNLQEDLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTWLMIFVVIIV  240 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999998877666566666777778


Q ss_pred             HHHHHHHhC
Q 033318          114 FLIVYYLTR  122 (122)
Q Consensus       114 f~il~~l~k  122 (122)
                      |+++++++|
T Consensus       241 Fi~mvl~ir  249 (251)
T PF09753_consen  241 FIMMVLFIR  249 (251)
T ss_pred             HHHHHHHhe
Confidence            888888876

They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.72  E-value=1e-07  Score=75.35  Aligned_cols=85  Identities=12%  Similarity=0.276  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh-cCCcchhHHHHHHHHHH
Q 033318           36 HDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET-KSSRRMFTLVASFVVIF  114 (122)
Q Consensus        36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~-~~~~~~~~iv~l~v~lf  114 (122)
                      .|-|+.+-.+..+|..|.++..+++.-|-+|...+|+++.++++|...++.+.+.+.|.-.. +.++++|+|.++++++|
T Consensus       214 ~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L~l~ii  293 (305)
T KOG0809|consen  214 REREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILMLTLLII  293 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHHHHHHH
Confidence            34577788999999999999999999999999999999999999999999999999999863 44455555544444444


Q ss_pred             HHHHHH
Q 033318          115 LIVYYL  120 (122)
Q Consensus       115 ~il~~l  120 (122)
                      +++.++
T Consensus       294 ~llvll  299 (305)
T KOG0809|consen  294 ALLVLL  299 (305)
T ss_pred             HHHHHH
Confidence            444443

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=3.3e-07  Score=72.97  Aligned_cols=78  Identities=15%  Similarity=0.365  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH---hcCCcchhHHHHHHHHHHHH
Q 033318           40 RALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFE---TKSSRRMFTLVASFVVIFLI  116 (122)
Q Consensus        40 ~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~---~~~~~~~~~iv~l~v~lf~i  116 (122)
                      +.+-.|..++..|+++..+|.-.|+.|..++|.++.++.++..-+..+...+++..+   ++..|++|++++++++++++
T Consensus       206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~  285 (297)
T KOG0810|consen  206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVL  285 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHH
Confidence            345669999999999999999999999999999999999999999999999997764   23333344444444333333


Q ss_pred             H
Q 033318          117 V  117 (122)
Q Consensus       117 l  117 (122)
                      +
T Consensus       286 v  286 (297)
T KOG0810|consen  286 V  286 (297)
T ss_pred             h
Confidence            3

>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.59  E-value=1e-06  Score=69.58  Aligned_cols=82  Identities=16%  Similarity=0.393  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhc-CCcchhHHHHHHHHHHHHHH
Q 033318           40 RALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETK-SSRRMFTLVASFVVIFLIVY  118 (122)
Q Consensus        40 ~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~-~~~~~~~iv~l~v~lf~il~  118 (122)
                      ..+..|++++.-|..+...+-.-|.+|.+++-++++.|+.+...+..+...|-|.++.= ++|++++=||+++++||++|
T Consensus       227 ~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFflvf  306 (311)
T KOG0812|consen  227 KTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFLVF  306 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            34556999999999999999999999999999999999999999999999999999874 45554444777777888888


Q ss_pred             HHh
Q 033318          119 YLT  121 (122)
Q Consensus       119 ~l~  121 (122)
                      |++
T Consensus       307 vlf  309 (311)
T KOG0812|consen  307 VLF  309 (311)
T ss_pred             HHh
Confidence            875

>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=98.56  E-value=1.2e-06  Score=68.85  Aligned_cols=85  Identities=13%  Similarity=0.298  Sum_probs=70.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH---hcCCcchhHHHH
Q 033318           32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFE---TKSSRRMFTLVA  108 (122)
Q Consensus        32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~---~~~~~~~~~iv~  108 (122)
                      +.+..|-|+.+..|+.+|.-|..+..+++.=|.+|..+.|.++.++++|+.-++.|.+.|.+.-.   +.+.|++|++++
T Consensus       187 q~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Lli  266 (283)
T COG5325         187 QILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLI  266 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHH
Confidence            33455669999999999999999999999999999999999999999999999999999999985   233445666666


Q ss_pred             HHHHHHHH
Q 033318          109 SFVVIFLI  116 (122)
Q Consensus       109 l~v~lf~i  116 (122)
                      ++|++.|+
T Consensus       267 l~vv~lfv  274 (283)
T COG5325         267 LLVVLLFV  274 (283)
T ss_pred             HHHHHHHH
Confidence            55555443

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.45  E-value=4e-06  Score=65.94  Aligned_cols=80  Identities=10%  Similarity=0.137  Sum_probs=66.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh--cCCcchhHHHHH
Q 033318           32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET--KSSRRMFTLVAS  109 (122)
Q Consensus        32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~--~~~~~~~~iv~l  109 (122)
                      ..+.+|-++.+..|+..+.-+..|..+++.=|.+|..+.|.++.+++++..-+..+++.|.+..+.  +..++.|+++++
T Consensus       172 ~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~v  251 (269)
T KOG0811|consen  172 LDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLLV  251 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHH
Confidence            344566778888999999999999999999999999999999999999999999999999999963  223334555444


Q ss_pred             HH
Q 033318          110 FV  111 (122)
Q Consensus       110 ~v  111 (122)
                      ++
T Consensus       252 ~~  253 (269)
T KOG0811|consen  252 GG  253 (269)
T ss_pred             HH
Confidence            33

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=98.22  E-value=1.5e-05  Score=61.62  Aligned_cols=80  Identities=9%  Similarity=0.219  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh----cCCcchhHHHHHHHHHH
Q 033318           39 ERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET----KSSRRMFTLVASFVVIF  114 (122)
Q Consensus        39 D~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~----~~~~~~~~iv~l~v~lf  114 (122)
                      -+.+-.|..++..|-++..+|..+|.+|..+.|-++.++..++..+..+...+.+.++.    +..++.||.+|+++++|
T Consensus       184 h~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~iii~v  263 (280)
T COG5074         184 HQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFIIIIV  263 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999988888763    23445888888877665


Q ss_pred             HHHH
Q 033318          115 LIVY  118 (122)
Q Consensus       115 ~il~  118 (122)
                      ++.+
T Consensus       264 iv~v  267 (280)
T COG5074         264 IVVV  267 (280)
T ss_pred             HHHH
Confidence            5443

>KOG2678 consensus Predicted membrane protein [Function unknown]

Probab=98.03  E-value=6.3e-05  Score=57.70  Aligned_cols=84  Identities=15%  Similarity=0.182  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCCcc-hhHHHHHHHHHHHH
Q 033318           38 NERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRR-MFTLVASFVVIFLI  116 (122)
Q Consensus        38 qD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~~~-~~~iv~l~v~lf~i  116 (122)
                      |++..+.|.+-++.||..+.+-++=+++-|..+..+...+|.....|..+..++.+-.++.+..+ .|.+++++|+.|+.
T Consensus       153 QeeLaesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~miI~v~~sFVs  232 (244)
T KOG2678|consen  153 QEELAESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMIIFVILSFVS  232 (244)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            45666778888899999999999999999999999999999999999999999999998776433 44445555666666


Q ss_pred             HHHHh
Q 033318          117 VYYLT  121 (122)
Q Consensus       117 l~~l~  121 (122)
                      +++++
T Consensus       233 Milii  237 (244)
T KOG2678|consen  233 MILII  237 (244)
T ss_pred             HHHHH
Confidence            66655

>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway

Probab=97.86  E-value=0.00054  Score=45.44  Aligned_cols=83  Identities=13%  Similarity=0.220  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHH
Q 033318           40 RALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYY  119 (122)
Q Consensus        40 ~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~~~~~~iv~l~v~lf~il~~  119 (122)
                      +.|......++.--..+..--+++.+|+..|..+++.++.....++.+.+-++++-++...=++++.+.|++++..++|+
T Consensus         8 ~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~yI   87 (92)
T PF03908_consen    8 ESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVLYI   87 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            34444444444444566667788999999999999999999999999999999998765543444444444444555555


Q ss_pred             HhC
Q 033318          120 LTR  122 (122)
Q Consensus       120 l~k  122 (122)
                      +.|
T Consensus        88 ~~r   90 (92)
T PF03908_consen   88 LWR   90 (92)
T ss_pred             hhh
Confidence            543

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=97.54  E-value=0.0012  Score=43.19  Aligned_cols=57  Identities=18%  Similarity=0.314  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhh---hHHhhhhhhhhHHHHHHHHHH
Q 033318           39 ERALEGLQDRVNLLKR-LSGDINEEVDTHNRMLERMGN---DMDASRGVLSGTMDKFKMVFE   96 (122)
Q Consensus        39 D~~Ld~L~~~v~~Lk~-~a~~I~~El~~Qn~lLD~l~~---~~d~t~~~L~~~~krl~kv~~   96 (122)
                      ++.+..+.+.|...++ +..+|..-++..+ -|+.|.+   ++........+..+++++-..
T Consensus         2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge-~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~   62 (89)
T PF00957_consen    2 NDKLEQIQEQVEEVKNIMRENIDKLLERGE-KLEELEDKTEELSDNAKQFKKNAKKLKRKMW   62 (89)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            3556677777777777 5556654444443 4555554   445555566666666665554

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.39  E-value=0.0023  Score=49.15  Aligned_cols=88  Identities=13%  Similarity=0.234  Sum_probs=67.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcC-CcchhHHHHHH
Q 033318           32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKS-SRRMFTLVASF  110 (122)
Q Consensus        32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~-~~~~~~iv~l~  110 (122)
                      +.+..|.+ .++.=...|..+=.+|.+-.+-+..|..+|..+++.+..+..++=....=+.++-.++. ..-++..|+.+
T Consensus       142 e~~lkE~~-~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis~  220 (231)
T KOG3208|consen  142 EMYLKEHD-HINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVISV  220 (231)
T ss_pred             HHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            44444443 45555566677778899999999999999999999999999998888777777754332 33466677888


Q ss_pred             HHHHHHHHHH
Q 033318          111 VVIFLIVYYL  120 (122)
Q Consensus       111 v~lf~il~~l  120 (122)
                      |++|+++||+
T Consensus       221 C~llllfy~~  230 (231)
T KOG3208|consen  221 CTLLLLFYWI  230 (231)
T ss_pred             HHHHHHHHHh
Confidence            8889999987

>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.74  E-value=0.033  Score=44.79  Aligned_cols=85  Identities=16%  Similarity=0.239  Sum_probs=58.3

Q ss_pred             hhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCC
Q 033318           31 HEIDEHDNERALEGLQ----------DRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSS  100 (122)
Q Consensus        31 ~~~l~~eqD~~Ld~L~----------~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~  100 (122)
                      .++++.|+-..+..+.          .++--+-.+-..+-+-|-.|..-+|.|.+..+.+..-++.++..+.+..+.++.
T Consensus       213 ~Q~~E~En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~  292 (316)
T KOG3894|consen  213 VQLLETENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGG  292 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhccc
Confidence            3556666655544444          333333344455667788899999999999999999999999999999987766


Q ss_pred             cchhHHHHHHHHHHH
Q 033318          101 RRMFTLVASFVVIFL  115 (122)
Q Consensus       101 ~~~~~iv~l~v~lf~  115 (122)
                      -+-|++++++|.-|+
T Consensus       293 ~r~~~lf~llvlsf~  307 (316)
T KOG3894|consen  293 LRVFLLFFLLVLSFS  307 (316)
T ss_pred             chhHHHHHHHHHHHH
Confidence            544444444443333

>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C

Probab=96.45  E-value=0.063  Score=33.01  Aligned_cols=59  Identities=12%  Similarity=0.195  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318           39 ERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET   97 (122)
Q Consensus        39 D~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~   97 (122)
                      .+.|+.=...+...-.+|.++..++..|...|......++.+...+..+.+-++++.++
T Consensus         7 ~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR   65 (66)
T PF12352_consen    7 SDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRR   65 (66)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcc
Confidence            33667777778888889999999999999999999999999999999998888887653

>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.44  E-value=0.047  Score=41.77  Aligned_cols=86  Identities=14%  Similarity=0.190  Sum_probs=58.1

Q ss_pred             cccccccCC-ccCCCccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhH
Q 033318            9 NSKVALFDG-IEEGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGT   87 (122)
Q Consensus         9 ~~r~~l~~g-~~~~g~~~~~~~~~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~   87 (122)
                      .+|..|.++ .|.+.-.-+.++.++   .+-+..+..=+..+..+=..|.+|=+-+.+|+..|-.....|-...+.|.=+
T Consensus       100 ~er~~lL~~~~~~~~~~~~~~~D~e---l~~~d~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlS  176 (213)
T KOG3251|consen  100 RERVELLDRRFTNGATGTSIPFDEE---LQENDSLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLS  176 (213)
T ss_pred             HHHHHHhcCCCCCCCccCCCcchHH---HHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            347777777 232222223322221   2334456666777777788899999999999999999999999988888766


Q ss_pred             HHHHHHHHHh
Q 033318           88 MDKFKMVFET   97 (122)
Q Consensus        88 ~krl~kv~~~   97 (122)
                      ..=|.-+-++
T Consensus       177 n~ti~lIeRR  186 (213)
T KOG3251|consen  177 NQTIRLIERR  186 (213)
T ss_pred             HHHHHHHHHH
Confidence            6555555444

>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.35  E-value=0.062  Score=37.48  Aligned_cols=37  Identities=14%  Similarity=0.296  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHhhhh---hhhhHHHHHHHHH
Q 033318           58 DINEEVDTHNRMLERMGNDMDASRG---VLSGTMDKFKMVF   95 (122)
Q Consensus        58 ~I~~El~~Qn~lLD~l~~~~d~t~~---~L~~~~krl~kv~   95 (122)
                      ++..=++.+.+ ||+|++..|..+.   ..+++..++++-.
T Consensus        48 NV~KVlER~ek-L~~L~drad~L~~~as~F~~~A~klkrk~   87 (116)
T KOG0860|consen   48 NVEKVLERGEK-LDELDDRADQLQAGASQFEKTAVKLKRKM   87 (116)
T ss_pred             hHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444443 6666665555443   4555555665444

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.07  E-value=0.097  Score=40.13  Aligned_cols=67  Identities=16%  Similarity=0.295  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcC-CcchhHHHHHH--HHHHHHHHHH
Q 033318           54 RLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKS-SRRMFTLVASF--VVIFLIVYYL  120 (122)
Q Consensus        54 ~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~-~~~~~~iv~l~--v~lf~il~~l  120 (122)
                      ++|..|-.++..|-..|..-....-.+++-|.++.+-+.-+.++.- ++..|++|+++  +++++++|+-
T Consensus       149 qIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY~k  218 (220)
T KOG1666|consen  149 QIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILYSK  218 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4677888899999999999999999999999999999999987643 44555554333  3444445543

>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes []

Probab=95.63  E-value=0.15  Score=32.24  Aligned_cols=61  Identities=11%  Similarity=0.327  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhC
Q 033318           59 INEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR  122 (122)
Q Consensus        59 I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~~~~~~iv~l~v~lf~il~~l~k  122 (122)
                      +...++.+.+-++.++..-+.....+.+..+++.++-...  ++.|.+++..+ +.+++++++|
T Consensus        11 ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~--kW~~r~iiGai-I~~i~~~i~K   71 (71)
T PF10779_consen   11 IETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNT--KWIWRTIIGAI-ITAIIYLIIK   71 (71)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHHhC
Confidence            3444455555666666666666667777777777774422  23333333333 4444566554

>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.23  E-value=0.33  Score=33.88  Aligned_cols=56  Identities=11%  Similarity=0.216  Sum_probs=45.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHH
Q 033318           32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTM   88 (122)
Q Consensus        32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~   88 (122)
                      +...+|-|+-.+-+...|...-.=+..+ +||++--+-|..-.+.|.++..+|++-+
T Consensus        32 ~~tq~QvdeVv~IMr~NV~KVlER~ekL-~~L~drad~L~~~as~F~~~A~klkrk~   87 (116)
T KOG0860|consen   32 QQTQAQVDEVVDIMRENVEKVLERGEKL-DELDDRADQLQAGASQFEKTAVKLKRKM   87 (116)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5567788888888888888777666555 6788888889999999999999998855

>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD

Probab=94.51  E-value=0.83  Score=30.00  Aligned_cols=56  Identities=13%  Similarity=0.136  Sum_probs=36.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHhhhhhhhhHH
Q 033318           33 IDEHDNERALEGLQDRVNLLKRLSGDINEEVDTH-NRMLERMGNDMDASRGVLSGTM   88 (122)
Q Consensus        33 ~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Q-n~lLD~l~~~~d~t~~~L~~~~   88 (122)
                      .+.++-++..+.+..-+..++..+....+++.+. ...++............+....
T Consensus         2 ~l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~   58 (94)
T PF05957_consen    2 DLKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQA   58 (94)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777888888888888888777777777766 3355555555544444443333

>PRK00846 hypothetical protein; Provisional

Probab=91.73  E-value=2.1  Score=27.72  Aligned_cols=54  Identities=13%  Similarity=0.102  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhH
Q 033318           34 DEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGT   87 (122)
Q Consensus        34 l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~   87 (122)
                      ..++.++.|+.|..++.-.-..--.+|+.|-.|...+|.|...+.....+|+..
T Consensus         7 ~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~   60 (77)
T PRK00846          7 RDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV   60 (77)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            355677899999999999999999999999999999999988887777766554

>PRK10884 SH3 domain-containing protein; Provisional

Probab=91.71  E-value=3.9  Score=31.03  Aligned_cols=60  Identities=13%  Similarity=0.244  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318           36 HDNERALEGLQDRV----NLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF   95 (122)
Q Consensus        36 ~eqD~~Ld~L~~~v----~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~   95 (122)
                      .+.++++..+...+    ...++....+.+++.+.+..+.+|...-++....+..+.++...+-
T Consensus        96 p~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~  159 (206)
T PRK10884         96 PDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAAN  159 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444    4445566777777777788888888888888888877777776543

>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.57  E-value=1.7  Score=33.45  Aligned_cols=79  Identities=14%  Similarity=0.199  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHH
Q 033318           41 ALEGLQDRVNLLKR-LSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYY  119 (122)
Q Consensus        41 ~Ld~L~~~v~~Lk~-~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~~~~~~iv~l~v~lf~il~~  119 (122)
                      .++.+..-+..++. ++.+|++ |-.-+..|+.+...-+.....-+.-.+..+.+....-...++.++++.++++|++++
T Consensus       135 n~~~~n~el~~v~~im~~nied-vl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~aa~~~~~~~l~f~~~f  213 (216)
T KOG0862|consen  135 NLLKLNQELQDVQRIMVENLED-VLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYAAYVVFFVLLLFYVRF  213 (216)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHH-HHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555 4455544 444444566666555554444444444444444444444455666666666666555


Q ss_pred             H
Q 033318          120 L  120 (122)
Q Consensus       120 l  120 (122)
                      +
T Consensus       214 ~  214 (216)
T KOG0862|consen  214 I  214 (216)
T ss_pred             h
Confidence            4

>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport

Probab=91.23  E-value=5.6  Score=30.63  Aligned_cols=87  Identities=13%  Similarity=0.135  Sum_probs=63.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh----cCCcchhHHH
Q 033318           32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET----KSSRRMFTLV  107 (122)
Q Consensus        32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~----~~~~~~~~iv  107 (122)
                      +...+.++..-+.|.+.+   -.+|..+..-...=+..|.+=...++.+...+.++...|+....+    .+.++.|+..
T Consensus       155 e~~l~~~~~~QE~L~~em---~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~  231 (251)
T PF09753_consen  155 EKILQHHRNLQEDLTEEM---LSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTW  231 (251)
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence            333456666677777664   456778888777778888888999999999999999999877753    2333467777


Q ss_pred             HHHHHHHHHHHHHh
Q 033318          108 ASFVVIFLIVYYLT  121 (122)
Q Consensus       108 ~l~v~lf~il~~l~  121 (122)
                      +++++++++|+++|
T Consensus       232 ~~i~~v~~~Fi~mv  245 (251)
T PF09753_consen  232 LMIFVVIIVFIMMV  245 (251)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777777666554

They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].

>PF15188 CCDC-167: Coiled-coil domain-containing protein 167

Probab=90.90  E-value=3.3  Score=27.36  Aligned_cols=76  Identities=12%  Similarity=0.361  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCCcchhHHHHHHHHHHHHH
Q 033318           41 ALEGLQDRVNLLKRLSGDINEEVDTHN---RMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIV  117 (122)
Q Consensus        41 ~Ld~L~~~v~~Lk~~a~~I~~El~~Qn---~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~~~~~~iv~l~v~lf~il  117 (122)
                      ++|.+..++.+.+.-=..|..-+..-.   .-=..++..+......+..-=++++.+-+  .+++-+.+...+++++|++
T Consensus         6 eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk--ENrK~~~ls~~l~~v~~Lv   83 (85)
T PF15188_consen    6 EIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRK--ENRKSMLLSVALFFVCFLV   83 (85)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH--hhhhhHHHHHHHHHHHHHH
Confidence            345555555555544434333332210   11134557777888888888888887765  3334344444434444444


Q ss_pred             H
Q 033318          118 Y  118 (122)
Q Consensus       118 ~  118 (122)
                      |
T Consensus        84 Y   84 (85)
T PF15188_consen   84 Y   84 (85)
T ss_pred             c
Confidence            4

>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function

Probab=90.58  E-value=2.3  Score=29.05  Aligned_cols=49  Identities=10%  Similarity=0.184  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhh
Q 033318           37 DNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLS   85 (122)
Q Consensus        37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~   85 (122)
                      .|.++++.|.+.|..+-..=.....|++.|...|+-+...+...+.+|.
T Consensus        50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD   98 (102)
T PF01519_consen   50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLD   98 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556666666666666666666667777777777666666665555543

It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=90.32  E-value=2.7  Score=26.27  Aligned_cols=51  Identities=18%  Similarity=0.279  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHH
Q 033318           38 NERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTM   88 (122)
Q Consensus        38 qD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~   88 (122)
                      .++.++.|..++.-+-..-..+++.|-.|...||.|...+.....+|+...
T Consensus         2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~   52 (69)
T PF04102_consen    2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE   52 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            467889999999999999999999999999999999988888888777643

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>COG4575 ElaB Uncharacterized conserved protein [Function unknown]

Probab=90.31  E-value=4.3  Score=27.78  Aligned_cols=90  Identities=12%  Similarity=0.111  Sum_probs=58.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhc-CCcchhHHHHH
Q 033318           32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTH-NRMLERMGNDMDASRGVLSGTMDKFKMVFETK-SSRRMFTLVAS  109 (122)
Q Consensus        32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Q-n~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~-~~~~~~~iv~l  109 (122)
                      +.++.|..+.++.+.+-++.=-..|.+=.+|++.. +..|.+..+.+..+...+....+..-...... ..+.||.|-+.
T Consensus        11 ~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~PWq~VGva   90 (104)
T COG4575          11 DQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENPWQGVGVA   90 (104)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence            45566666666666666655556667777777777 66899999999888877766666555554432 23357877665


Q ss_pred             HHHHHHHHHHHh
Q 033318          110 FVVIFLIVYYLT  121 (122)
Q Consensus       110 ~v~lf~il~~l~  121 (122)
                      ..+-||+=.++.
T Consensus        91 AaVGlllGlLls  102 (104)
T COG4575          91 AAVGLLLGLLLS  102 (104)
T ss_pred             HHHHHHHHHHHh
Confidence            555555544443

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=90.16  E-value=3.6  Score=29.02  Aligned_cols=61  Identities=18%  Similarity=0.375  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318           35 EHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF   95 (122)
Q Consensus        35 ~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~   95 (122)
                      -.+.-+.||.+..++...+.++..|.+||.+=..-++.+..+++..+..+..--.++..+-
T Consensus        63 KkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie  123 (126)
T PF07889_consen   63 KKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE  123 (126)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3466678888999999999999999999988888888888888888888877777766553

The region featured in this family is approximately 100 amino acids long.

>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function

Probab=90.03  E-value=4.3  Score=27.37  Aligned_cols=46  Identities=11%  Similarity=0.255  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhh
Q 033318           36 HDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASR   81 (122)
Q Consensus        36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~   81 (122)
                      .|+|..+-.|...-...++--..|.+-+..|+...+.|+-.+|+..
T Consensus         7 ~e~e~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~   52 (98)
T PF11166_consen    7 HEHEWRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEIN   52 (98)
T ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHH
Confidence            4788889999999989998888999999999999999999998843

It has a highly conserved sequence.

>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra []

Probab=89.71  E-value=1.3  Score=28.65  Aligned_cols=50  Identities=18%  Similarity=0.361  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhHHhhhhhhh
Q 033318           36 HDNERALEGLQDRVNLLKRLSGD---INEEVDTHNRMLERMGNDMDASRGVLS   85 (122)
Q Consensus        36 ~eqD~~Ld~L~~~v~~Lk~~a~~---I~~El~~Qn~lLD~l~~~~d~t~~~L~   85 (122)
                      .+-|+..+.|...|..++.--.+   |++-++.|..-|+.++..++..+..|+
T Consensus        14 k~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~   66 (75)
T PF05531_consen   14 KAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILN   66 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            56788899999999988886555   889999999999999998888777664

; GO: 0019028 viral capsid

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.40  E-value=9.1  Score=30.35  Aligned_cols=86  Identities=14%  Similarity=0.066  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCCcchhHHHHHHHHHH
Q 033318           35 EHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIF  114 (122)
Q Consensus        35 ~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~~~~~~iv~l~v~lf  114 (122)
                      .++.+..+-++..-...|..+-.+=|+-|+.=..-++....++......|.+|.+-=.+..+.. -...|++++++++++
T Consensus       182 I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~-~~ll~v~~~v~lii~  260 (269)
T KOG0811|consen  182 IEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKK-CILLLVGGPVGLIIG  260 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hhhhHHHHHHHHHHH
Confidence            4566777777777777777777777777777777788888888888888888777666555544 224666666666666


Q ss_pred             HHHHHHh
Q 033318          115 LIVYYLT  121 (122)
Q Consensus       115 ~il~~l~  121 (122)
                      +++|.+.
T Consensus       261 l~i~~~~  267 (269)
T KOG0811|consen  261 LIIAGIA  267 (269)
T ss_pred             HHHHHhh
Confidence            6666553

>PRK00736 hypothetical protein; Provisional

Probab=88.91  E-value=3.8  Score=25.71  Aligned_cols=48  Identities=19%  Similarity=0.282  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318           39 ERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSG   86 (122)
Q Consensus        39 D~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~   86 (122)
                      ++.++.|..++.-+-..--.+++.|-.|.+.||.|...+.....+++.
T Consensus         4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~   51 (68)
T PRK00736          4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS   51 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456899999999999999999999999999999888777766666644

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=88.71  E-value=7.6  Score=28.40  Aligned_cols=52  Identities=21%  Similarity=0.354  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHH-------HHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318           35 EHDNERALEGLQDRVNLLKR-LSGD-------INEEVDTHNRMLERMGNDMDASRGVLSG   86 (122)
Q Consensus        35 ~~eqD~~Ld~L~~~v~~Lk~-~a~~-------I~~El~~Qn~lLD~l~~~~d~t~~~L~~   86 (122)
                      ..+-|..=+.|..-+..++. +-.+       +.+|...++.-+.++++.++.--+.|+.
T Consensus        86 ~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~  145 (177)
T PF07798_consen   86 QREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRT  145 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444444444 3333       3444444444444444444444333333

>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)

Probab=88.58  E-value=8.6  Score=30.10  Aligned_cols=15  Identities=13%  Similarity=0.226  Sum_probs=8.2

Q ss_pred             hhhhhhhHHHHHHHH
Q 033318           80 SRGVLSGTMDKFKMV   94 (122)
Q Consensus        80 t~~~L~~~~krl~kv   94 (122)
                      .+.++++.+|.+.-+
T Consensus       250 ~s~~~N~~mk~LTvv  264 (318)
T TIGR00383       250 VNNKMNEIMKILTVV  264 (318)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344666666665543

The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.

>PRK04325 hypothetical protein; Provisional

Probab=88.33  E-value=4.8  Score=25.63  Aligned_cols=49  Identities=12%  Similarity=0.190  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318           38 NERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSG   86 (122)
Q Consensus        38 qD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~   86 (122)
                      .++.++.|..++.-+-..-..+++.|-.|.+.|+.|...+.....+++.
T Consensus         7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~   55 (74)
T PRK04325          7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD   55 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4466999999999999999999999999999998888776666555544

>PRK00295 hypothetical protein; Provisional

Probab=87.06  E-value=5.5  Score=24.93  Aligned_cols=48  Identities=19%  Similarity=0.220  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318           39 ERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSG   86 (122)
Q Consensus        39 D~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~   86 (122)
                      ++.++.|..++.-+-..-..+++.|-.|.+.||.|...+.....+++.
T Consensus         4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~   51 (68)
T PRK00295          4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE   51 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456899999999999999999999999999999888777776665554

>PRK02119 hypothetical protein; Provisional

Probab=86.85  E-value=6  Score=25.14  Aligned_cols=51  Identities=12%  Similarity=0.247  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318           36 HDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSG   86 (122)
Q Consensus        36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~   86 (122)
                      ...++.++.|..++.-+-..-..+|+.|-.|.+.||.|...+.....+++.
T Consensus         5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~   55 (73)
T PRK02119          5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD   55 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456789999999999999999999999999999998888777666555544

>PRK04406 hypothetical protein; Provisional

Probab=86.09  E-value=6.9  Score=25.06  Aligned_cols=49  Identities=12%  Similarity=0.306  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhh
Q 033318           37 DNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLS   85 (122)
Q Consensus        37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~   85 (122)
                      ..++.++.|..++.-+-..-..+|+.|-.|...||.|...+.....+++
T Consensus         8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~   56 (75)
T PRK04406          8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK   56 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678999999999999999999999999999999888877766655554

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=85.81  E-value=14  Score=29.10  Aligned_cols=74  Identities=8%  Similarity=0.121  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCCc-chhHHHHHHHHH
Q 033318           35 EHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSR-RMFTLVASFVVI  113 (122)
Q Consensus        35 ~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~~-~~~~iv~l~v~l  113 (122)
                      ++|.-+.+..++.-|.....+--.|.+       -+.+...++.....-+.++.+-..+.-++.-.+ .+|++++.+++.
T Consensus       194 ~ael~qLfndm~~~V~eq~e~Vd~I~~-------~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~iii~viv~  266 (280)
T COG5074         194 MAELTQLFNDMEELVIEQQENVDVIDK-------NVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFIIIIVIVV  266 (280)
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHh-------hHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHHHHHHHHH
Confidence            445555555555555555444444444       455566777777778888888888888877766 477776655554


Q ss_pred             HH
Q 033318          114 FL  115 (122)
Q Consensus       114 f~  115 (122)
                      |+
T Consensus       267 vv  268 (280)
T COG5074         267 VV  268 (280)
T ss_pred             HH
Confidence            44

>PRK02793 phi X174 lysis protein; Provisional

Probab=85.75  E-value=6.9  Score=24.77  Aligned_cols=50  Identities=16%  Similarity=0.244  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318           37 DNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSG   86 (122)
Q Consensus        37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~   86 (122)
                      +.++.++.|..++.-+-..-..+++.|-.|...||.+...+.....+++.
T Consensus         5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~   54 (72)
T PRK02793          5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA   54 (72)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35678999999999999999999999999999898888776666555543

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.36  E-value=8.2  Score=29.73  Aligned_cols=30  Identities=17%  Similarity=0.221  Sum_probs=20.4

Q ss_pred             HHHHhhhh---hHHhhhhhhhhHHHHHHHHHHh
Q 033318           68 RMLERMGN---DMDASRGVLSGTMDKFKMVFET   97 (122)
Q Consensus        68 ~lLD~l~~---~~d~t~~~L~~~~krl~kv~~~   97 (122)
                      .+|.+|+.   ...++..+|..+...+.+-.+.
T Consensus       153 ~IL~dL~~QRe~L~rar~rL~~td~~lgkS~ki  185 (220)
T KOG1666|consen  153 EILEDLHGQREQLERARERLRETDANLGKSRKI  185 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHH
Confidence            36777775   4556667777777777776654

>PRK10132 hypothetical protein; Provisional

Probab=80.85  E-value=15  Score=25.10  Aligned_cols=54  Identities=4%  Similarity=0.047  Sum_probs=26.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHhhhhhhh
Q 033318           32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTH-NRMLERMGNDMDASRGVLS   85 (122)
Q Consensus        32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Q-n~lLD~l~~~~d~t~~~L~   85 (122)
                      ..++.+.++..++|..-+..+..+-..-.++..++ ..+=+.++...+.+..++.
T Consensus         8 ~~~~~q~e~L~~Dl~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~   62 (108)
T PRK10132          8 NDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMH   62 (108)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34556666666666666666644433333333222 2233444445555554444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	122
2nps_D	82	Syntaxin-6; vesicle fusion, snare complex, early e	6e-13
1gl2_D	65	Syntaxin 8, vesicle transport V-snare protein VTI1	2e-05
1sfc_D	87	Protein (SNAP-25B), protein (synaptobrevin 2); mem	3e-05
1n7s_D	66	SNAP-25A; neuronal snare protein complex, four hel	1e-04

>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Length = 82

 Score = 58.7 bits (142), Expect = 6e-13
 Identities = 19/81 (23%), Positives = 34/81 (41%)

Query: 22  GIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASR 81
           G   +S           +  LE +   + +LK +S  I  E++    MLE   +++++++
Sbjct: 1   GSHMASMTGGNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQ 60

Query: 82  GVLSGTMDKFKMVFETKSSRR 102
             L   M K   V    S RR
Sbjct: 61  SRLDNVMKKLAKVSHMTSDRR 81

>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Length = 65

 Score = 38.6 bits (90), Expect = 2e-05
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKF 91
           + E D    L+ L   ++  K++  +I  E+D  N +++ + N ++ +   L     + 
Sbjct: 3  HMQEQDAG--LDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRV 60

Query: 92 KMV 94
           +V
Sbjct: 61 TLV 63

>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Length = 87

 Score = 38.7 bits (90), Expect = 3e-05
 Identities = 12/66 (18%), Positives = 33/66 (50%)

Query: 27 SSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSG 86
             +++  E++ +  LE +   +  L+ ++ D+  E+DT NR ++R+    D+++  +  
Sbjct: 16 RRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDE 75

Query: 87 TMDKFK 92
             +  
Sbjct: 76 ANQRAT 81

>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Length = 66

 Score = 36.6 bits (85), Expect = 1e-04
 Identities = 12/58 (20%), Positives = 30/58 (51%)

Query: 35 EHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFK 92
          E++ +  LE +   +  L+ ++ D+  E+DT NR ++R+    D+++  +     +  
Sbjct: 5  ENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	122
1sfc_D	87	Protein (SNAP-25B), protein (synaptobrevin 2); mem	99.78
2nps_D	82	Syntaxin-6; vesicle fusion, snare complex, early e	99.77
1n7s_D	66	SNAP-25A; neuronal snare protein complex, four hel	99.74
1gl2_D	65	Syntaxin 8, vesicle transport V-snare protein VTI1	99.73
1l4a_D	87	S-SNAP25 fusion protein; snare, snare complex, mem	99.73
3b5n_D	64	Protein transport protein SEC9; snare complex, syn	99.6
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	99.19
1jth_B	77	Syntaxin 1A; coiled-coil, polar layer, endocytosis	98.21
2nps_B	71	Syntaxin 13, vesicle-associated membrane protein 4	98.01
3b5n_B	69	Protein SSO1; snare complex, syntaxin, synaptobrev	97.87
1sfc_B	83	Protein (syntaxin 1A), protein (synaptobrevin 2);	97.83
1gl2_B	65	Syntaxin 7; membrane protein, membrane fusion prot	97.81
1n7s_B	68	Syntaxin 1A; neuronal snare protein complex, four	97.76
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	96.89
1dn1_B	267	Syntaxin 1A, syntaxin binding protein 1; protein-p	95.82
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	94.75
2xhe_B	279	Syntaxin1; exocytosis, exocytosis complex, snare,	93.93
3c98_B	279	Syntaxin-1A; protein complex, alternative splicing	93.66
1n7s_C	79	SNAP-25A; neuronal snare protein complex, four hel	92.87
1nhl_A	54	Synaptosomal-associated protein 23; snare, coiled-	92.35
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	92.25
2nps_C	81	Vesicle transport through interaction with T- snar	89.65
1gl2_C	65	VTI1B, vesicle transport V-snare protein VTI1-like	88.48
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	87.33
4ev6_A	339	Magnesium transport protein CORA; membrane protein	83.93
1gmj_A	84	ATPase inhibitor; coiled-coil structure, P depende	80.94

>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.78  E-value=6.6e-19  Score=115.93  Aligned_cols=78  Identities=18%  Similarity=0.365  Sum_probs=70.5

Q ss_pred             ccCCCccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318           18 IEEGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET   97 (122)
Q Consensus        18 ~~~~g~~~~~~~~~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~   97 (122)
                      .|.++|....  +++.+++|||+.|+.|+..|++||++|.+|++||+.||.+||+|+.++|++..+|..+++|+++++++
T Consensus         9 ~~s~~yi~~~--~~d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~k   86 (87)
T 1sfc_D            9 AISGGFIRRV--TNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGS   86 (87)
T ss_dssp             ---CCCSCCS--SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             CCCCchhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence            5778888854  57999999999999999999999999999999999999999999999999999999999999998764

>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}

Probab=99.77  E-value=6.9e-19  Score=114.61  Aligned_cols=73  Identities=23%  Similarity=0.357  Sum_probs=61.7

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCCcc
Q 033318           30 SHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRR  102 (122)
Q Consensus        30 ~~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~~~  102 (122)
                      .++.+++|||+.||.|+++|++||++|.+||+||++||.+||+|+++||++..+|+.+++|+.++++++++++
T Consensus         9 ~Q~~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~~   81 (82)
T 2nps_D            9 GGNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRR   81 (82)
T ss_dssp             ---------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence            4567788999999999999999999999999999999999999999999999999999999999999887763

>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B

Probab=99.74  E-value=4.3e-18  Score=106.56  Aligned_cols=64  Identities=19%  Similarity=0.379  Sum_probs=62.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318           32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF   95 (122)
Q Consensus        32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~   95 (122)
                      +.+|.|||+.|+.|+++|++||++|.+||+||+.||.+||+++++||++..+|+.+++|+.+++
T Consensus         2 d~~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ll   65 (66)
T 1n7s_D            2 SARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML   65 (66)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHc
Confidence            5789999999999999999999999999999999999999999999999999999999999875

>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.73  E-value=4.9e-18  Score=105.98  Aligned_cols=64  Identities=16%  Similarity=0.334  Sum_probs=53.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH
Q 033318           33 IDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFE   96 (122)
Q Consensus        33 ~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~   96 (122)
                      .+++|||+.||.|+++|++||++|.+||+||+.||.+||+|+++||++..+|+.+++|+.++.+
T Consensus         2 ~~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~k   65 (65)
T 1gl2_D            2 SHMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDR   65 (65)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            4678999999999999999999999999999999999999999999999999999999998864

>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=99.73  E-value=9.8e-18  Score=110.42  Aligned_cols=77  Identities=14%  Similarity=0.303  Sum_probs=70.3

Q ss_pred             ccCCCccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH
Q 033318           18 IEEGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFE   96 (122)
Q Consensus        18 ~~~~g~~~~~~~~~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~   96 (122)
                      .|.|+|....  +.+.++.|||+.|+.|+..|++||++|.+|++||+.||.+||++++++|++..+|..+++|++++++
T Consensus        10 ~~~~~~i~~~--~~d~~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~   86 (87)
T 1l4a_D           10 GPSSGYVTRI--TNDAREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLK   86 (87)
T ss_dssp             -CCSSSSCCS--SCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC-
T ss_pred             CCCchHHhcc--chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4677877655  5678999999999999999999999999999999999999999999999999999999999999875

>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}

Probab=99.60  E-value=3.2e-15  Score=93.22  Aligned_cols=62  Identities=19%  Similarity=0.244  Sum_probs=60.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHH
Q 033318           32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKM   93 (122)
Q Consensus        32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~k   93 (122)
                      +.+|.|+|+.|+.|++.+++||++|.+||+||+.||.+||+++.+++++..++..+++|+.+
T Consensus         2 d~~E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~   63 (64)
T 3b5n_D            2 SEMELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG   63 (64)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            67899999999999999999999999999999999999999999999999999999999976

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=99.19  E-value=2.2e-10  Score=77.87  Aligned_cols=63  Identities=11%  Similarity=0.237  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH
Q 033318           34 DEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFE   96 (122)
Q Consensus        34 l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~   96 (122)
                      ..++-++.+..|+.++..|+++..++...|.+|..++|.++++++++...+..+.+.+++..+
T Consensus        15 ~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~   77 (109)
T 3hd7_B           15 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK   77 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346888899999999999999999999999999999999999999999999999999999864

>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B

Probab=98.21  E-value=1.7e-05  Score=50.28  Aligned_cols=63  Identities=11%  Similarity=0.213  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318           35 EHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET   97 (122)
Q Consensus        35 ~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~   97 (122)
                      .++-.+.+..|..++..|+.+..++..-|.+|..+||.++.+++.+...+..+.+.+.+..+.
T Consensus         5 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~   67 (77)
T 1jth_B            5 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY   67 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778899999999999999999999999999999999999999999999999999999874

>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=98.01  E-value=4.3e-05  Score=47.67  Aligned_cols=61  Identities=10%  Similarity=0.191  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318           37 DNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET   97 (122)
Q Consensus        37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~   97 (122)
                      +-.+.+..|..++..|+.+..+|..-|.+|..+||.++.+++.+...+..+...+.+..+.
T Consensus         3 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~   63 (71)
T 2nps_B            3 MRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYY   63 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4467789999999999999999999999999999999999999999999999999998864

>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=97.87  E-value=0.00021  Score=44.27  Aligned_cols=62  Identities=11%  Similarity=0.160  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH
Q 033318           35 EHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFE   96 (122)
Q Consensus        35 ~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~   96 (122)
                      .++-.+.+..|..++..|+.+..++..-|.+|..+||.++.+++.+...+..+.+.+.+..+
T Consensus         5 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~   66 (69)
T 3b5n_B            5 VQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK   66 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667889999999999999999999999999999999999999999999999999998765

>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B

Probab=97.83  E-value=0.00026  Score=45.33  Aligned_cols=66  Identities=11%  Similarity=0.215  Sum_probs=61.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhc
Q 033318           33 IDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETK   98 (122)
Q Consensus        33 ~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~   98 (122)
                      ...++-.+.+..|..++..|+.+..++..-|.+|..+||.++.+++.+...+..+.+.+.+..+..
T Consensus        14 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~q   79 (83)
T 1sfc_B           14 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQ   79 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345677888999999999999999999999999999999999999999999999999999988744

>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=97.81  E-value=0.00011  Score=45.08  Aligned_cols=59  Identities=7%  Similarity=0.248  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHH
Q 033318           36 HDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMV   94 (122)
Q Consensus        36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv   94 (122)
                      ++-.+.+..|..++..|+.+..++..-|.+|..+||.++.+++.+...+..+.+.+.+.
T Consensus         5 ~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA   63 (65)
T 1gl2_B            5 HERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRA   63 (65)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667889999999999999999999999999999999999999999999999998874

>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B

Probab=97.76  E-value=0.00026  Score=43.67  Aligned_cols=60  Identities=12%  Similarity=0.227  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHH
Q 033318           35 EHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMV   94 (122)
Q Consensus        35 ~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv   94 (122)
                      .++-.+.+..|..++..|+.+..++..=|.+|..+||.++.+++.+...+..+.+.+.+.
T Consensus         7 i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA   66 (68)
T 1n7s_B            7 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA   66 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778899999999999999999999999999999999999999999999999999875

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=96.89  E-value=0.013  Score=38.04  Aligned_cols=55  Identities=16%  Similarity=0.306  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHh---hhhhhhhHHHHHHHHH
Q 033318           40 RALEGLQDRVNLLKR-LSGDINEEVDTHNRMLERMGNDMDA---SRGVLSGTMDKFKMVF   95 (122)
Q Consensus        40 ~~Ld~L~~~v~~Lk~-~a~~I~~El~~Qn~lLD~l~~~~d~---t~~~L~~~~krl~kv~   95 (122)
                      +.+..+...|...+. |..+|..=++... -||.|.+.-+.   ......++.+++++-.
T Consensus         5 d~l~~vq~ev~evk~iM~~NI~kvL~Rge-kL~~L~~kt~~L~~~s~~F~~~A~~l~rkm   63 (91)
T 3hd7_A            5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQ-KLSELDDRADALQAGASQFETSAAKLKRKY   63 (91)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555 4555555444443 35555554443   4444555555555443

>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B

Probab=95.82  E-value=0.0043  Score=47.35  Aligned_cols=63  Identities=11%  Similarity=0.213  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318           35 EHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET   97 (122)
Q Consensus        35 ~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~   97 (122)
                      .++-.+.+..|..++..|+.+..+|..-|.+|..+||.++.+++.+...+..+...+.+..+-
T Consensus       195 i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~  257 (267)
T 1dn1_B          195 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY  257 (267)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677899999999999999999999999999999999999999999999999999988763

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=94.75  E-value=0.0053  Score=41.86  Aligned_cols=41  Identities=17%  Similarity=0.288  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHhhhh
Q 033318           41 ALEGLQDRVNLLKR-LSGDINEEVDTHNRMLERMGNDMDASRG   82 (122)
Q Consensus        41 ~Ld~L~~~v~~Lk~-~a~~I~~El~~Qn~lLD~l~~~~d~t~~   82 (122)
                      .+..+...|...+. |..+|. .+-+-.+-||.|.+.-+....
T Consensus        34 ~l~~vq~evdeVk~IM~~NId-kvLeRGEkLd~L~~KTe~L~~   75 (119)
T 2kog_A           34 RLQQTQAQVDEVVDIMRVNVD-KVLERDQKLSELDDRADALQA   75 (119)
T ss_dssp             HHHHSSHHHHHHHHHHHHHHH-HHHCCCCSSCCCCSCCSCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHH
Confidence            34445555555555 444444 333444457777766555444

>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}

Probab=93.93  E-value=0.011  Score=45.07  Aligned_cols=61  Identities=13%  Similarity=0.266  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH
Q 033318           36 HDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFE   96 (122)
Q Consensus        36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~   96 (122)
                      ++=++.+..|..++..|+.+..+|..-|.+|..+||.++.+++.+...+..+.+.+.+..+
T Consensus       213 ~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~  273 (279)
T 2xhe_B          213 RDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARH  273 (279)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4557789999999999999999999999999999999999999999999999999988765

>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}

Probab=93.66  E-value=0.031  Score=41.08  Aligned_cols=63  Identities=11%  Similarity=0.213  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318           35 EHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET   97 (122)
Q Consensus        35 ~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~   97 (122)
                      .++-.+.+..|...+..+..+..+|..-+++|...+|+++.+++.+...+..+...+.+..+.
T Consensus       207 i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~  269 (279)
T 3c98_B          207 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY  269 (279)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778899999999999999999999999999999999999999999999999999887754

>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A

Probab=92.87  E-value=1.1  Score=28.11  Aligned_cols=57  Identities=16%  Similarity=0.179  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318           39 ERALEGLQDRVNLL---KRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF   95 (122)
Q Consensus        39 D~~Ld~L~~~v~~L---k~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~   95 (122)
                      ++.++.+..+++..   ..+|..+-.++..|...|+..+..++.+..-++.+-+.|..+.
T Consensus        19 ~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~   78 (79)
T 1n7s_C           19 DESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG   78 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhc
Confidence            33344444443333   3477788899999999999999999999999999999888764

>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1

Probab=92.35  E-value=0.29  Score=28.52  Aligned_cols=43  Identities=12%  Similarity=0.081  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHH
Q 033318           50 NLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFK   92 (122)
Q Consensus        50 ~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~   92 (122)
                      ..-..++..+-.++..|...|+.++..++.....++.+-+.+.
T Consensus        10 ~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~   52 (54)
T 1nhl_A           10 IESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT   52 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence            3445688888999999999999999999999999999988765

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=92.25  E-value=0.029  Score=38.11  Aligned_cols=56  Identities=9%  Similarity=0.180  Sum_probs=35.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318           32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF   95 (122)
Q Consensus        32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~   95 (122)
                      +.+..|-|+--+.+...+..+-.-+..+        ..|++-.+++........+..+++++-.
T Consensus        36 ~~vq~evdeVk~IM~~NIdkvLeRGEkL--------d~L~~KTe~L~~~S~~F~k~A~kl~rkm   91 (119)
T 2kog_A           36 QQTQAQVDEVVDIMRVNVDKVLERDQKL--------SELDDRADALQAGASQFETSAAKLKRKY   91 (119)
T ss_dssp             HHSSHHHHHHHHHHHHHHHHHHCCCCSS--------CCCCSCCSCCCSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666666777666665544333        2466667777777777777777776554

>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=89.65  E-value=2.5  Score=26.39  Aligned_cols=49  Identities=6%  Similarity=0.140  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318           49 VNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET   97 (122)
Q Consensus        49 v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~   97 (122)
                      +..-..+|..|-.|+..|-..|......++.+..-+..+.+-++.+.++
T Consensus        28 ~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr   76 (81)
T 2nps_C           28 AVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRR   76 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence            3344458999999999999999999999999999999999999988765

>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=88.48  E-value=2.7  Score=25.14  Aligned_cols=55  Identities=16%  Similarity=0.193  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318           41 ALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF   95 (122)
Q Consensus        41 ~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~   95 (122)
                      .|..-...+.--..+|..|-.++..|-..|......++.+...|.++.+-++.+.
T Consensus        10 ~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~   64 (65)
T 1gl2_C           10 SIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMS   64 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhc
Confidence            3344444444556699999999999999999999999999999999998877653

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=87.33  E-value=3.3  Score=25.79  Aligned_cols=53  Identities=13%  Similarity=0.097  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHH
Q 033318           36 HDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTM   88 (122)
Q Consensus        36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~   88 (122)
                      .+.++.++.|..++.-+-..-..+++.|-.|...||.|...+.....++....
T Consensus        10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~   62 (78)
T 3efg_A           10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR   62 (78)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            35567899999999999999999999999999999999998888888776544

>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}

Probab=83.93  E-value=13  Score=28.53  Aligned_cols=16  Identities=19%  Similarity=0.142  Sum_probs=8.9

Q ss_pred             hhhhhhhHHHHHHHHH
Q 033318           80 SRGVLSGTMDKFKMVF   95 (122)
Q Consensus        80 t~~~L~~~~krl~kv~   95 (122)
                      .+.+++..++.+.-+.
T Consensus       271 is~~~N~~mk~LTiit  286 (339)
T 4ev6_A          271 ENIKMNQIMKILTMVT  286 (339)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3445666666665543

>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A

Probab=80.94  E-value=5.6  Score=25.30  Aligned_cols=28  Identities=14%  Similarity=0.433  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318           59 INEEVDTHNRMLERMGNDMDASRGVLSG   86 (122)
Q Consensus        59 I~~El~~Qn~lLD~l~~~~d~t~~~L~~   86 (122)
                      |-+||+.|..-|++++..+++...+|+.
T Consensus        49 l~~el~~h~~ei~~le~~i~rhk~~i~~   76 (84)
T 1gmj_A           49 KENEISHHAKEIERLQKEIERHKQSIKK   76 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3789999999999999888776555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00