Citrus Sinensis ID: 033380


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
MAHFPSGTQWLHSRVDVNGYEEYCGTEYRSAGCTEEYSVVERSLQHGGEEESLMLEGDIGGGGCLWISAKVWHLLIDLMSRKFSSVSSGTVNLELWSEERPVSKQSPLAVSHEYEVIKIP
ccccccccccEEEEEEcccEEEEcccEEEccccccHHHHHHHHHHHcccccEEEEEEEccccEEEEEcccEEEEEEEEEEEEEEcccccEEEEEEEccccccccccccEEEEEEEEEEcc
ccccccccccccccEEcccEEEccccEEccccccHHHHHHHHcHHHccccEEEEEEEcccccEEEEEcccEEEEEEHHHHHEEEccccccEEEEEccccccccccccEEEEEEEEEEEcc
mahfpsgtqwlhsrvdvngyeeycgteyrsagcteEYSVVERSlqhggeeeslmlegdiggggcLWISAKVWHLLIDLMSRkfssvssgtvnlelwseerpvskqsplavsheyevikip
mahfpsgtqwlhsrvDVNGYEEYCGTEyrsagcteEYSVVERSLQHGGEEESLMLEGDIGGGGCLWISAKVWHLLIDLMSRKFSSVSSGTVNLElwseerpvskqsplavsheyevikip
MAHFPSGTQWLHSRVDVNGYEEYCGTEYRSAGCTEEYSVVERSLQHGGEEESLMLEGDIGGGGCLWISAKVWHLLIDLMSRKFSSVSSGTVNLELWSEERPVSKQSPLAVSHEYEVIKIP
********QWLHSRVDVNGYEEYCGTEYRSAGCTEEYSVVERSL*******SLMLEGDIGGGGCLWISAKVWHLLIDLMSRKFSSVSSGTVNLELW************************
****PSGTQWLHSRVDVNGYEEYCGTEYRSAGCTEEYSVVER**********LMLEGDIGGGGCLWISAKVWHLLIDLMSRKFSSVSSGTVNLELWSEERPVSKQSPLAVSHEYEVIKIP
MAHFPSGTQWLHSRVDVNGYEEYCGTEYRSAGCTEEYSVVERSLQHGGEEESLMLEGDIGGGGCLWISAKVWHLLIDLMSRKFSSVSSGTVNLELWS**********LAVSHEYEVIKIP
******GTQWLHSRVDVNGYEEYCGTEYRSAGCTEEYSVVERSLQHGGEEESLMLEGDIGGGGCLWISAKVWHLLIDLMSRKFSSVSSGTVNLELWSEERPVSKQSPLAVSHEYEVIKIP
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MAHFPSGTQWLHSRVDVNGYEEYCGTEYRSAGCTEEYSVVERSLQHGGEEESLMLEGDIGGGGCLWISAKVWHLLIDLMSRKFSSVSSGTVNLELWSEERPVSKQSPLAVSHEYEVIKIP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query120
297831124 988 hypothetical protein ARALYDRAFT_898886 [ 0.541 0.065 0.769 1e-23
18403833 991 heteroglycan glucosidase 1 [Arabidopsis 0.541 0.065 0.769 2e-23
9294522 959 alpha glucosidase-like protein [Arabidop 0.541 0.067 0.769 2e-23
255557713 991 neutral alpha-glucosidase ab precursor, 0.541 0.065 0.753 9e-22
357484583 1058 Alpha glucosidase-like protein [Medicago 0.541 0.061 0.723 9e-22
224138396 1001 predicted protein [Populus trichocarpa] 0.541 0.064 0.753 1e-21
326493540 462 predicted protein [Hordeum vulgare subsp 0.516 0.134 0.725 4e-20
222636918 973 hypothetical protein OsJ_23995 [Oryza sa 0.775 0.095 0.51 6e-20
218199495 974 hypothetical protein OsI_25772 [Oryza sa 0.541 0.066 0.707 7e-20
208609043 980 alpha-glucosidase like protein [Hordeum 0.516 0.063 0.725 7e-20
>gi|297831124|ref|XP_002883444.1| hypothetical protein ARALYDRAFT_898886 [Arabidopsis lyrata subsp. lyrata] gi|297329284|gb|EFH59703.1| hypothetical protein ARALYDRAFT_898886 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/65 (76%), Positives = 57/65 (87%)

Query: 1   MAHFPSGTQWLHSRVDVNGYEEYCGTEYRSAGCTEEYSVVERSLQHGGEEESLMLEGDIG 60
           M H PSG QWLHSR+D+NGYEEY GTEYRSAGCTEEY+V+ER L+H GEEESL+LEGD+G
Sbjct: 778 MTHVPSGIQWLHSRIDINGYEEYSGTEYRSAGCTEEYNVIERDLEHAGEEESLILEGDVG 837

Query: 61  GGGCL 65
           GG  L
Sbjct: 838 GGLVL 842




Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403833|ref|NP_566736.1| heteroglycan glucosidase 1 [Arabidopsis thaliana] gi|186510357|ref|NP_001118685.1| heteroglycan glucosidase 1 [Arabidopsis thaliana] gi|16648903|gb|AAL24303.1| alpha glucosidase-like protein [Arabidopsis thaliana] gi|27311799|gb|AAO00865.1| Unknown protein [Arabidopsis thaliana] gi|31711788|gb|AAP68250.1| At3g23640 [Arabidopsis thaliana] gi|332643272|gb|AEE76793.1| heteroglycan glucosidase 1 [Arabidopsis thaliana] gi|332643273|gb|AEE76794.1| heteroglycan glucosidase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|9294522|dbj|BAB02784.1| alpha glucosidase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255557713|ref|XP_002519886.1| neutral alpha-glucosidase ab precursor, putative [Ricinus communis] gi|223540932|gb|EEF42490.1| neutral alpha-glucosidase ab precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357484583|ref|XP_003612579.1| Alpha glucosidase-like protein [Medicago truncatula] gi|355513914|gb|AES95537.1| Alpha glucosidase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|224138396|ref|XP_002326592.1| predicted protein [Populus trichocarpa] gi|222833914|gb|EEE72391.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|326493540|dbj|BAJ85231.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|222636918|gb|EEE67050.1| hypothetical protein OsJ_23995 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|218199495|gb|EEC81922.1| hypothetical protein OsI_25772 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|208609043|dbj|BAG72144.1| alpha-glucosidase like protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query120
TAIR|locus:2088035991 HGL1 "heteroglycan glucosidase 0.516 0.062 0.790 1.8e-35
TAIR|locus:2088035 HGL1 "heteroglycan glucosidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 289 (106.8 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
 Identities = 49/62 (79%), Positives = 56/62 (90%)

Query:     1 MAHFPSGTQWLHSRVDVNGYEEYCGTEYRSAGCTEEYSVVERSLQHGGEEESLMLEGDIG 60
             M H PSG QWLHSR+D+NGYEEY GTEYRSAGCTEEY+V+ER L+H GEEESL+LEGD+G
Sbjct:   781 MTHVPSGIQWLHSRIDINGYEEYSGTEYRSAGCTEEYNVIERDLEHAGEEESLILEGDVG 840

Query:    61 GG 62
             GG
Sbjct:   841 GG 842


GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query120
PLN02763978 PLN02763, PLN02763, hydrolase, hydrolyzing O-glyco 1e-31
PLN02763978 PLN02763, PLN02763, hydrolase, hydrolyzing O-glyco 8e-14
>gnl|CDD|215408 PLN02763, PLN02763, hydrolase, hydrolyzing O-glycosyl compounds Back     alignment and domain information
 Score =  116 bits (293), Expect = 1e-31
 Identities = 47/62 (75%), Positives = 51/62 (82%)

Query: 1   MAHFPSGTQWLHSRVDVNGYEEYCGTEYRSAGCTEEYSVVERSLQHGGEEESLMLEGDIG 60
           M H PSG QWLHSR+++ GYEEY GTEYRSAGCTEEY VVER L+  G EESL LEGDIG
Sbjct: 769 MIHKPSGYQWLHSRIEIGGYEEYSGTEYRSAGCTEEYKVVERDLEQAGGEESLGLEGDIG 828

Query: 61  GG 62
           GG
Sbjct: 829 GG 830


Length = 978

>gnl|CDD|215408 PLN02763, PLN02763, hydrolase, hydrolyzing O-glycosyl compounds Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 120
PLN02763978 hydrolase, hydrolyzing O-glycosyl compounds 100.0
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds Back     alignment and domain information
Probab=100.00  E-value=7.7e-62  Score=441.17  Aligned_cols=119  Identities=68%  Similarity=1.111  Sum_probs=116.7

Q ss_pred             CccCCCCccceeeeeecCceeeeccceeecCCccchhhhhhhhhhhCCCceeEEEeeecCCeeEEE--E-----echhhh
Q 033380            1 MAHFPSGTQWLHSRVDVNGYEEYCGTEYRSAGCTEEYSVVERSLQHGGEEESLMLEGDIGGGGCLW--I-----SAKVWH   73 (120)
Q Consensus         1 M~H~PSg~qWl~sR~e~~GYEEysgtE~rsaGctEEY~Vi~R~l~~~~~ee~l~lEgDIGGGLvl~--I-----~~~~~~   73 (120)
                      |+|+|||+||||||+|+|||||||||||||||||||||||+|+|+|+++||+|+|||||||||||+  |     |||+++
T Consensus       769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  848 (978)
T PLN02763        769 MIHKPSGYQWLHSRIEIGGYEEYSGTEYRSAGCTEEYKVVERDLEQAGGEESLGLEGDIGGGLVLAREISIPKDSPKVVK  848 (978)
T ss_pred             EEecCCcchhhhhhcccCceeeccccccccCCCchhHHHHHHHHHHcCCceeEEeeecccCcEEEEEEeecccCCCceEE
Confidence            899999999999999999999999999999999999999999999999999999999999999999  5     999999


Q ss_pred             H----------------------------------------------------------------------hHHH-----
Q 033380           74 L----------------------------------------------------------------------LIDL-----   78 (120)
Q Consensus        74 i----------------------------------------------------------------------LvD~-----   78 (120)
                      |                                                                      ||||     
T Consensus       849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  928 (978)
T PLN02763        849 ISSSIVARSVGAGSGGFSRLVCLRVHPTFKLLHPTESFVSFTAIDGSKHELWPEFGEQFYEGNDRPNGEWMLVDKETGLA  928 (978)
T ss_pred             EeeeeEEeecccCCCCcceeEEEEeccceeecCccceeEEEEeccCcccccCCcccceeeecCCCCCceEEEEeccccee
Confidence            9                                                                      9999     


Q ss_pred             hhhhc--ccc-------cCCeeeeeeccccccCCCCCCeeeeeeeeEEec
Q 033380           79 MSRKF--SSV-------SSGTVNLELWSEERPVSKQSPLAVSHEYEVIKI  119 (120)
Q Consensus        79 lvnrF--~eV-------g~g~vnleLWSeeRpVSk~tPL~IsH~Yev~~~  119 (120)
                      |||||  +||       |||+||||||||||||||||||+|||+||||++
T Consensus       929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  978 (978)
T PLN02763        929 VVNRFDVKEVEKCHVHWGPGTVNLELWSEERPVSKETPLSISHEYEVIDT  978 (978)
T ss_pred             EEeecChhheEEEEEEecCCceeeeeecccCCcccCCCceEeeeeEEecC
Confidence            99999  888       999999999999999999999999999999985




Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00